Multiple sequence alignment - TraesCS3B01G322900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G322900 chr3B 100.000 3762 0 0 1 3762 522779280 522775519 0.000000e+00 6948
1 TraesCS3B01G322900 chr3D 88.784 2122 125 63 1 2041 397160848 397158759 0.000000e+00 2495
2 TraesCS3B01G322900 chr3D 90.094 848 53 14 2179 3010 397158612 397157780 0.000000e+00 1072
3 TraesCS3B01G322900 chr3D 96.000 250 8 1 3510 3759 154871294 154871541 4.520000e-109 405
4 TraesCS3B01G322900 chr3D 95.276 254 10 1 3509 3762 558280510 558280259 5.850000e-108 401
5 TraesCS3B01G322900 chr3A 87.667 2092 102 66 44 2041 516635264 516633235 0.000000e+00 2290
6 TraesCS3B01G322900 chr3A 88.408 578 45 12 2445 3008 516632533 516631964 0.000000e+00 676
7 TraesCS3B01G322900 chr3A 84.173 417 28 16 2056 2448 516633154 516632752 1.650000e-98 370
8 TraesCS3B01G322900 chr7D 88.200 500 54 5 3008 3505 571877080 571877576 3.240000e-165 592
9 TraesCS3B01G322900 chr7D 83.992 506 78 3 3005 3509 517352711 517353214 2.030000e-132 483
10 TraesCS3B01G322900 chr4D 86.694 496 62 4 3017 3509 439740907 439740413 7.100000e-152 547
11 TraesCS3B01G322900 chr2A 90.073 413 29 5 2603 3010 186284184 186284589 3.330000e-145 525
12 TraesCS3B01G322900 chr2A 95.652 253 9 1 3510 3762 680772584 680772334 4.520000e-109 405
13 TraesCS3B01G322900 chr5D 85.404 507 68 5 3006 3509 417045198 417045701 4.310000e-144 521
14 TraesCS3B01G322900 chr5D 84.854 515 75 3 3006 3517 487532122 487531608 2.000000e-142 516
15 TraesCS3B01G322900 chr5D 84.211 513 77 4 2999 3509 121340944 121341454 2.610000e-136 496
16 TraesCS3B01G322900 chr5D 96.000 250 8 1 3510 3759 81709095 81709342 4.520000e-109 405
17 TraesCS3B01G322900 chr7B 85.341 498 70 3 3013 3509 510555448 510555943 2.590000e-141 512
18 TraesCS3B01G322900 chr6D 86.871 457 58 2 3007 3461 86596551 86597007 9.320000e-141 510
19 TraesCS3B01G322900 chr6D 93.962 265 12 3 3499 3762 469903638 469903377 7.570000e-107 398
20 TraesCS3B01G322900 chr6D 86.454 251 23 4 1285 1525 465420162 465420411 8.010000e-67 265
21 TraesCS3B01G322900 chr6B 83.689 515 81 3 2996 3509 471214405 471214917 2.030000e-132 483
22 TraesCS3B01G322900 chr2D 96.000 250 8 1 3510 3759 315208712 315208959 4.520000e-109 405
23 TraesCS3B01G322900 chr1D 95.652 253 9 1 3510 3762 352743165 352742915 4.520000e-109 405
24 TraesCS3B01G322900 chr1B 95.635 252 9 1 3508 3759 650515013 650515262 1.630000e-108 403
25 TraesCS3B01G322900 chr6A 94.318 264 12 2 3500 3762 340378955 340378694 5.850000e-108 401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G322900 chr3B 522775519 522779280 3761 True 6948.0 6948 100.000000 1 3762 1 chr3B.!!$R1 3761
1 TraesCS3B01G322900 chr3D 397157780 397160848 3068 True 1783.5 2495 89.439000 1 3010 2 chr3D.!!$R2 3009
2 TraesCS3B01G322900 chr3A 516631964 516635264 3300 True 1112.0 2290 86.749333 44 3008 3 chr3A.!!$R1 2964
3 TraesCS3B01G322900 chr7D 517352711 517353214 503 False 483.0 483 83.992000 3005 3509 1 chr7D.!!$F1 504
4 TraesCS3B01G322900 chr5D 417045198 417045701 503 False 521.0 521 85.404000 3006 3509 1 chr5D.!!$F3 503
5 TraesCS3B01G322900 chr5D 487531608 487532122 514 True 516.0 516 84.854000 3006 3517 1 chr5D.!!$R1 511
6 TraesCS3B01G322900 chr5D 121340944 121341454 510 False 496.0 496 84.211000 2999 3509 1 chr5D.!!$F2 510
7 TraesCS3B01G322900 chr6B 471214405 471214917 512 False 483.0 483 83.689000 2996 3509 1 chr6B.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 944 0.036671 CCTCGTCGCCTTAAAAGGGT 60.037 55.0 10.69 0.0 46.56 4.34 F
1703 1847 0.721718 CTTTCAACGCCACCTCGATC 59.278 55.0 0.00 0.0 0.00 3.69 F
2362 2613 0.108992 GGCACATCTGCACATGTTGG 60.109 55.0 4.69 0.0 46.28 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2082 0.100682 TGAGACGTTGCGCTCCTATC 59.899 55.0 9.73 0.0 32.33 2.08 R
2567 3045 0.318275 GTCAGAGATGATCGCCGTCC 60.318 60.0 0.00 0.0 0.00 4.79 R
3430 3920 0.401738 CCATCGTCCTATGCCCCAAT 59.598 55.0 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 117 5.340891 AGGTGACCAGAGCCTATTCTATA 57.659 43.478 3.63 0.00 0.00 1.31
111 118 5.081032 AGGTGACCAGAGCCTATTCTATAC 58.919 45.833 3.63 0.00 0.00 1.47
112 119 4.082679 GGTGACCAGAGCCTATTCTATACG 60.083 50.000 0.00 0.00 0.00 3.06
113 120 4.519730 GTGACCAGAGCCTATTCTATACGT 59.480 45.833 0.00 0.00 0.00 3.57
120 127 6.883217 CAGAGCCTATTCTATACGTACCCTTA 59.117 42.308 0.00 0.00 0.00 2.69
138 145 4.322424 CCCTTAAGCGCCCTTGTTTAAAAT 60.322 41.667 2.29 0.00 32.47 1.82
143 150 3.068873 AGCGCCCTTGTTTAAAATTGTGA 59.931 39.130 2.29 0.00 0.00 3.58
149 156 6.741240 GCCCTTGTTTAAAATTGTGATGTCCT 60.741 38.462 0.00 0.00 0.00 3.85
173 180 3.311110 TCTCTTCGGCGCAAGGGT 61.311 61.111 10.83 0.00 38.28 4.34
256 267 2.209273 TCACGTTGCAGCGCATATATT 58.791 42.857 23.44 0.00 38.76 1.28
269 284 3.058501 CGCATATATTTTCCCCACCGAAC 60.059 47.826 0.00 0.00 0.00 3.95
292 307 5.636543 ACGGAAAGCTACAAACATACACTAC 59.363 40.000 0.00 0.00 0.00 2.73
309 335 0.527600 TACACACTGATCGCCGATGC 60.528 55.000 3.34 0.00 0.00 3.91
347 373 2.226330 GTATGTGGCAACCTGTGAACA 58.774 47.619 0.00 0.00 32.00 3.18
367 393 5.464030 ACATTGACGTGTCTAACCTAACT 57.536 39.130 0.00 0.00 0.00 2.24
397 423 9.787435 TCCTTGTTTTCAGTTACTTGTATATGT 57.213 29.630 0.00 0.00 0.00 2.29
439 465 2.369532 AGGGCTTTCGGTTACTTGTGTA 59.630 45.455 0.00 0.00 0.00 2.90
440 466 3.140623 GGGCTTTCGGTTACTTGTGTAA 58.859 45.455 0.00 0.00 36.41 2.41
442 468 4.319984 GGGCTTTCGGTTACTTGTGTAAAG 60.320 45.833 0.00 0.00 39.96 1.85
461 498 1.664321 GGCCAGCCTCTCATTTGCAG 61.664 60.000 0.00 0.00 0.00 4.41
473 514 3.443052 TCATTTGCAGGATGATTGGGTT 58.557 40.909 9.91 0.00 39.69 4.11
475 516 2.905415 TTGCAGGATGATTGGGTTCT 57.095 45.000 0.00 0.00 39.69 3.01
476 517 4.314522 TTTGCAGGATGATTGGGTTCTA 57.685 40.909 0.00 0.00 39.69 2.10
478 519 5.645056 TTGCAGGATGATTGGGTTCTATA 57.355 39.130 0.00 0.00 39.69 1.31
506 547 4.978083 ATGGTTATGCTTTCAGCTCAAG 57.022 40.909 0.00 0.00 42.97 3.02
507 548 3.084039 TGGTTATGCTTTCAGCTCAAGG 58.916 45.455 4.66 0.00 42.97 3.61
508 549 2.159324 GGTTATGCTTTCAGCTCAAGGC 60.159 50.000 0.00 0.00 42.97 4.35
558 604 2.030007 CGATGTGCCTGTGTTCCAAAAT 60.030 45.455 0.00 0.00 0.00 1.82
563 609 2.896044 TGCCTGTGTTCCAAAATGCATA 59.104 40.909 0.00 0.00 0.00 3.14
571 617 5.931146 GTGTTCCAAAATGCATAATTCCACA 59.069 36.000 0.00 0.00 0.00 4.17
690 736 6.183360 TGTCTTGCACCAAAACAAAAGCTATA 60.183 34.615 0.00 0.00 0.00 1.31
693 739 8.580720 TCTTGCACCAAAACAAAAGCTATAATA 58.419 29.630 0.00 0.00 0.00 0.98
694 740 9.202273 CTTGCACCAAAACAAAAGCTATAATAA 57.798 29.630 0.00 0.00 0.00 1.40
696 742 9.717942 TGCACCAAAACAAAAGCTATAATAATT 57.282 25.926 0.00 0.00 0.00 1.40
697 743 9.971744 GCACCAAAACAAAAGCTATAATAATTG 57.028 29.630 0.00 0.00 0.00 2.32
721 770 1.448540 AACATCGGGAGCTGCTTCG 60.449 57.895 16.48 16.48 0.00 3.79
745 799 4.518249 ACTTTTGAGCTATAGCCCACTTC 58.482 43.478 21.17 12.02 43.38 3.01
886 944 0.036671 CCTCGTCGCCTTAAAAGGGT 60.037 55.000 10.69 0.00 46.56 4.34
897 955 3.596214 CTTAAAAGGGTCTCTGCGCTTA 58.404 45.455 9.73 0.00 40.11 3.09
918 976 1.746760 CAGTGCGCTTTTCACTTCAC 58.253 50.000 9.73 0.00 42.38 3.18
941 1003 3.894427 AGCTTCACTTCTCAGAGACTTCA 59.106 43.478 0.00 0.00 0.00 3.02
947 1009 4.156556 CACTTCTCAGAGACTTCAGAGAGG 59.843 50.000 0.00 7.28 43.92 3.69
961 1054 3.849574 TCAGAGAGGGAGAGAGAGAGAAA 59.150 47.826 0.00 0.00 0.00 2.52
982 1075 2.026169 ACCGTGGTGAGTGAGATAGAGA 60.026 50.000 0.00 0.00 0.00 3.10
983 1076 3.218453 CCGTGGTGAGTGAGATAGAGAT 58.782 50.000 0.00 0.00 0.00 2.75
984 1077 4.141459 ACCGTGGTGAGTGAGATAGAGATA 60.141 45.833 0.00 0.00 0.00 1.98
985 1078 4.454161 CCGTGGTGAGTGAGATAGAGATAG 59.546 50.000 0.00 0.00 0.00 2.08
986 1079 5.301555 CGTGGTGAGTGAGATAGAGATAGA 58.698 45.833 0.00 0.00 0.00 1.98
987 1080 5.408299 CGTGGTGAGTGAGATAGAGATAGAG 59.592 48.000 0.00 0.00 0.00 2.43
988 1081 6.530120 GTGGTGAGTGAGATAGAGATAGAGA 58.470 44.000 0.00 0.00 0.00 3.10
989 1082 6.650807 GTGGTGAGTGAGATAGAGATAGAGAG 59.349 46.154 0.00 0.00 0.00 3.20
1030 1123 1.306141 CTAGGGCTGGACAGGGTGA 60.306 63.158 1.01 0.00 0.00 4.02
1050 1143 1.140804 GGACTGCTTCTCGCTCTCC 59.859 63.158 0.00 0.00 40.11 3.71
1197 1290 5.395768 GGCTAAGACTCTTGCTTTCCATCTA 60.396 44.000 1.17 0.00 0.00 1.98
1223 1316 7.286775 AGAGCCAAAGGTAAACAAGAATTAACA 59.713 33.333 0.00 0.00 0.00 2.41
1257 1354 3.755905 TCTCTATCTAAGATGCCTCTGCG 59.244 47.826 0.00 0.00 41.78 5.18
1261 1358 1.139654 TCTAAGATGCCTCTGCGCAAT 59.860 47.619 13.05 0.02 43.24 3.56
1311 1441 1.915769 GGTGGAGCTGAGGGTGTCT 60.916 63.158 0.00 0.00 0.00 3.41
1408 1538 7.914427 ACTGAACCTTTAAATCCCTTTTTCT 57.086 32.000 0.00 0.00 0.00 2.52
1480 1614 3.521531 TCATGCTGGGGTACTTGTTATCA 59.478 43.478 0.00 0.00 0.00 2.15
1562 1697 3.625764 TGGCCGTAAGCTTTGCTAATTAG 59.374 43.478 3.20 8.20 38.25 1.73
1564 1699 4.812626 GGCCGTAAGCTTTGCTAATTAGTA 59.187 41.667 13.91 6.76 38.25 1.82
1565 1700 5.469084 GGCCGTAAGCTTTGCTAATTAGTAT 59.531 40.000 13.91 0.00 38.25 2.12
1566 1701 6.017357 GGCCGTAAGCTTTGCTAATTAGTATT 60.017 38.462 13.91 3.78 38.25 1.89
1568 1703 7.281484 CCGTAAGCTTTGCTAATTAGTATTCG 58.719 38.462 13.91 4.25 38.25 3.34
1569 1704 6.786103 CGTAAGCTTTGCTAATTAGTATTCGC 59.214 38.462 13.91 11.37 38.25 4.70
1570 1705 6.927294 AAGCTTTGCTAATTAGTATTCGCT 57.073 33.333 13.91 13.13 38.25 4.93
1571 1706 8.975439 GTAAGCTTTGCTAATTAGTATTCGCTA 58.025 33.333 13.91 5.05 38.25 4.26
1580 1715 7.603024 GCTAATTAGTATTCGCTAAGGGACAAT 59.397 37.037 13.91 0.00 34.83 2.71
1597 1739 5.006649 GGGACAATTTGACAGCTTGTTTTTC 59.993 40.000 2.79 0.00 33.46 2.29
1638 1780 1.098869 TGCTTTCGAACCTGCACAAA 58.901 45.000 13.44 0.00 0.00 2.83
1703 1847 0.721718 CTTTCAACGCCACCTCGATC 59.278 55.000 0.00 0.00 0.00 3.69
1721 1865 6.199908 CCTCGATCTGTTGATAATTCAGACAC 59.800 42.308 0.00 0.00 40.29 3.67
1871 2019 3.693085 GCGGATCTGTAGACCGGATAATA 59.307 47.826 9.46 0.00 45.66 0.98
1872 2020 4.157289 GCGGATCTGTAGACCGGATAATAA 59.843 45.833 9.46 0.00 45.66 1.40
1873 2021 5.163540 GCGGATCTGTAGACCGGATAATAAT 60.164 44.000 9.46 0.00 45.66 1.28
1893 2041 5.767816 AATTTTTCAAAGTAGAGTGGCGT 57.232 34.783 0.00 0.00 0.00 5.68
1894 2042 4.545823 TTTTTCAAAGTAGAGTGGCGTG 57.454 40.909 0.00 0.00 0.00 5.34
2008 2160 1.446272 GTCAGACGCGGGAAGGAAG 60.446 63.158 12.47 0.00 0.00 3.46
2047 2247 2.192861 CCTCTGTGCGCCAAAACCA 61.193 57.895 4.18 0.00 0.00 3.67
2060 2285 3.242576 GCCAAAACCACAAATTTCGTTGG 60.243 43.478 8.01 8.01 32.50 3.77
2069 2294 3.243602 ACAAATTTCGTTGGTGGGCTAAC 60.244 43.478 0.00 0.00 32.50 2.34
2073 2298 2.281900 GTTGGTGGGCTAACGGCA 60.282 61.111 0.00 0.00 44.01 5.69
2075 2300 1.602323 TTGGTGGGCTAACGGCAAG 60.602 57.895 0.00 0.00 44.01 4.01
2094 2319 2.179547 CAGTGAACACAGCCACGCA 61.180 57.895 7.68 0.00 38.26 5.24
2127 2352 5.482006 TCCGGAAAGCTTTTAGGTTAGTAC 58.518 41.667 24.13 6.30 34.42 2.73
2128 2353 5.011943 TCCGGAAAGCTTTTAGGTTAGTACA 59.988 40.000 24.13 8.56 34.42 2.90
2129 2354 5.121298 CCGGAAAGCTTTTAGGTTAGTACAC 59.879 44.000 14.05 0.00 34.42 2.90
2130 2355 5.930569 CGGAAAGCTTTTAGGTTAGTACACT 59.069 40.000 14.05 0.00 34.42 3.55
2131 2356 7.092716 CGGAAAGCTTTTAGGTTAGTACACTA 58.907 38.462 14.05 0.00 34.42 2.74
2132 2357 7.275123 CGGAAAGCTTTTAGGTTAGTACACTAG 59.725 40.741 14.05 0.00 34.42 2.57
2133 2358 8.093307 GGAAAGCTTTTAGGTTAGTACACTAGT 58.907 37.037 14.05 0.00 34.42 2.57
2134 2359 8.828688 AAAGCTTTTAGGTTAGTACACTAGTG 57.171 34.615 21.44 21.44 34.42 2.74
2135 2360 6.396450 AGCTTTTAGGTTAGTACACTAGTGC 58.604 40.000 22.90 7.58 0.00 4.40
2299 2538 0.683828 TGCATGCATGGATCGGGTTT 60.684 50.000 27.34 0.00 0.00 3.27
2301 2540 0.670162 CATGCATGGATCGGGTTTCC 59.330 55.000 19.40 0.00 0.00 3.13
2312 2551 2.048877 GGTTTCCTCCGTTCGCGA 60.049 61.111 3.71 3.71 44.71 5.87
2314 2553 0.179129 GGTTTCCTCCGTTCGCGATA 60.179 55.000 10.88 0.00 44.71 2.92
2362 2613 0.108992 GGCACATCTGCACATGTTGG 60.109 55.000 4.69 0.00 46.28 3.77
2366 2617 2.162208 CACATCTGCACATGTTGGTACC 59.838 50.000 4.69 4.43 34.60 3.34
2454 2927 3.981071 AGATTTGGTACTACTGCTGCA 57.019 42.857 0.88 0.88 0.00 4.41
2469 2942 1.596464 GCTGCAGCGCTCATAATTGAC 60.596 52.381 25.23 0.00 0.00 3.18
2484 2957 2.358737 GACCTGCCACCACCTTCG 60.359 66.667 0.00 0.00 0.00 3.79
2558 3036 6.898189 CGGTTAAACTATGTTGATTTACGAGC 59.102 38.462 0.00 0.00 0.00 5.03
2564 3042 2.602878 TGTTGATTTACGAGCCGAGTC 58.397 47.619 1.50 0.00 0.00 3.36
2565 3043 1.925185 GTTGATTTACGAGCCGAGTCC 59.075 52.381 1.50 0.00 0.00 3.85
2566 3044 0.458669 TGATTTACGAGCCGAGTCCC 59.541 55.000 1.50 0.00 0.00 4.46
2567 3045 0.594284 GATTTACGAGCCGAGTCCCG 60.594 60.000 1.50 0.00 38.18 5.14
2582 3065 2.049985 CCGGACGGCGATCATCTC 60.050 66.667 16.62 0.00 0.00 2.75
2584 3067 1.371022 CGGACGGCGATCATCTCTG 60.371 63.158 16.62 0.00 0.00 3.35
2591 3074 2.220363 CGGCGATCATCTCTGACATTTG 59.780 50.000 0.00 0.00 33.22 2.32
2595 3078 4.811024 GCGATCATCTCTGACATTTGGTTA 59.189 41.667 0.00 0.00 33.22 2.85
2596 3079 5.468072 GCGATCATCTCTGACATTTGGTTAT 59.532 40.000 0.00 0.00 33.22 1.89
2598 3081 7.467811 GCGATCATCTCTGACATTTGGTTATTT 60.468 37.037 0.00 0.00 33.22 1.40
2600 3083 9.727627 GATCATCTCTGACATTTGGTTATTTTC 57.272 33.333 0.00 0.00 33.22 2.29
2644 3128 3.189287 CGTTTGAGGTGGATTTGGAGAAG 59.811 47.826 0.00 0.00 0.00 2.85
2765 3249 2.288091 CCGACTCCGAGTAGATAGACGA 60.288 54.545 10.00 0.00 38.22 4.20
2766 3250 3.577667 CGACTCCGAGTAGATAGACGAT 58.422 50.000 0.00 0.00 38.22 3.73
2767 3251 3.365520 CGACTCCGAGTAGATAGACGATG 59.634 52.174 0.00 0.00 38.22 3.84
2778 3262 7.984391 AGTAGATAGACGATGATGATGATGAC 58.016 38.462 0.00 0.00 0.00 3.06
2872 3358 1.731613 GCGTACGTAGCAGCACACA 60.732 57.895 17.90 0.00 34.19 3.72
2899 3385 4.706476 CCATGGCAAGGAAGAAACTATTGA 59.294 41.667 1.66 0.00 0.00 2.57
2903 3389 5.833131 TGGCAAGGAAGAAACTATTGAAAGT 59.167 36.000 0.00 0.00 0.00 2.66
2917 3403 7.173032 ACTATTGAAAGTTTGTAACTAGGGGG 58.827 38.462 0.00 0.00 41.91 5.40
2932 3418 1.379176 GGGGCCAAGGAAGAAGAGC 60.379 63.158 4.39 0.00 0.00 4.09
2936 3422 1.916697 GCCAAGGAAGAAGAGCGTGC 61.917 60.000 0.00 0.00 0.00 5.34
2971 3458 8.970859 ATTGGTTGATCTATCTACTCAAAAGG 57.029 34.615 0.00 0.00 33.89 3.11
3073 3563 4.739495 TCCCAGTTGGACCTGACA 57.261 55.556 0.00 0.00 38.61 3.58
3086 3576 2.102084 GACCTGACAGAGCATATGCAGA 59.898 50.000 28.62 5.47 45.16 4.26
3087 3577 2.102757 ACCTGACAGAGCATATGCAGAG 59.897 50.000 28.62 18.71 45.16 3.35
3129 3619 1.610554 GATTGGTTGCCTGCATGCCT 61.611 55.000 16.68 0.00 0.00 4.75
3142 3632 1.030457 CATGCCTTCTCCTTGCATCC 58.970 55.000 0.00 0.00 43.49 3.51
3196 3686 4.620982 CTCGCATTGTATGTGGTCAGATA 58.379 43.478 0.00 0.00 41.01 1.98
3198 3688 5.423886 TCGCATTGTATGTGGTCAGATAAA 58.576 37.500 0.00 0.00 41.01 1.40
3222 3712 2.687700 TGTTGTTTGGTTGCTTGCAT 57.312 40.000 0.00 0.00 0.00 3.96
3285 3775 5.157940 TGTTACACTAGAGTACCTCGACT 57.842 43.478 0.00 0.00 35.36 4.18
3286 3776 4.934001 TGTTACACTAGAGTACCTCGACTG 59.066 45.833 0.00 0.00 35.36 3.51
3289 3779 2.946329 CACTAGAGTACCTCGACTGCAT 59.054 50.000 0.00 0.00 35.36 3.96
3332 3822 2.799916 GTCCGACACGACGAGCAC 60.800 66.667 0.00 0.00 35.09 4.40
3333 3823 3.281395 TCCGACACGACGAGCACA 61.281 61.111 0.00 0.00 35.09 4.57
3341 3831 2.505118 GACGAGCACAGAGTCGCC 60.505 66.667 0.00 0.00 39.89 5.54
3343 3833 4.103103 CGAGCACAGAGTCGCCGA 62.103 66.667 0.00 0.00 0.00 5.54
3362 3852 1.299392 CGAGCAATCTCATCGGCGA 60.299 57.895 13.87 13.87 39.30 5.54
3366 3856 1.920051 CAATCTCATCGGCGACACG 59.080 57.895 13.76 3.76 0.00 4.49
3430 3920 4.080807 TGTGGATTAACGAATAGGAAGGCA 60.081 41.667 0.00 0.00 0.00 4.75
3434 3924 5.048713 GGATTAACGAATAGGAAGGCATTGG 60.049 44.000 0.00 0.00 0.00 3.16
3439 3929 0.862554 ATAGGAAGGCATTGGGGCAT 59.137 50.000 0.00 0.00 46.44 4.40
3444 3934 0.106015 AAGGCATTGGGGCATAGGAC 60.106 55.000 0.00 0.00 46.44 3.85
3462 3953 0.527565 ACGATGGTGGAAAATGCAGC 59.472 50.000 0.00 0.00 36.72 5.25
3467 3958 1.286880 GTGGAAAATGCAGCGTGCT 59.713 52.632 10.54 0.00 45.31 4.40
3468 3959 0.521291 GTGGAAAATGCAGCGTGCTA 59.479 50.000 10.54 0.00 45.31 3.49
3480 3971 2.256591 CGTGCTAGCCATGGCATCC 61.257 63.158 37.18 23.57 45.41 3.51
3493 3984 3.382083 TGGCATCCTCAGTGTAGTAGA 57.618 47.619 0.00 0.00 0.00 2.59
3497 3988 3.128938 GCATCCTCAGTGTAGTAGAACGT 59.871 47.826 0.00 0.00 0.00 3.99
3505 3996 3.080319 GTGTAGTAGAACGTGGAGGAGT 58.920 50.000 0.00 0.00 0.00 3.85
3509 4000 2.308275 AGTAGAACGTGGAGGAGTAGGT 59.692 50.000 0.00 0.00 0.00 3.08
3510 4001 1.546961 AGAACGTGGAGGAGTAGGTG 58.453 55.000 0.00 0.00 0.00 4.00
3511 4002 1.075050 AGAACGTGGAGGAGTAGGTGA 59.925 52.381 0.00 0.00 0.00 4.02
3514 4005 1.893801 ACGTGGAGGAGTAGGTGAAAG 59.106 52.381 0.00 0.00 0.00 2.62
3516 4007 2.561419 CGTGGAGGAGTAGGTGAAAGAA 59.439 50.000 0.00 0.00 0.00 2.52
3518 4009 4.322801 CGTGGAGGAGTAGGTGAAAGAAAT 60.323 45.833 0.00 0.00 0.00 2.17
3519 4010 5.105473 CGTGGAGGAGTAGGTGAAAGAAATA 60.105 44.000 0.00 0.00 0.00 1.40
3520 4011 6.407074 CGTGGAGGAGTAGGTGAAAGAAATAT 60.407 42.308 0.00 0.00 0.00 1.28
3521 4012 6.763610 GTGGAGGAGTAGGTGAAAGAAATATG 59.236 42.308 0.00 0.00 0.00 1.78
3522 4013 5.760743 GGAGGAGTAGGTGAAAGAAATATGC 59.239 44.000 0.00 0.00 0.00 3.14
3523 4014 5.685728 AGGAGTAGGTGAAAGAAATATGCC 58.314 41.667 0.00 0.00 0.00 4.40
3524 4015 4.822350 GGAGTAGGTGAAAGAAATATGCCC 59.178 45.833 0.00 0.00 0.00 5.36
3525 4016 5.398012 GGAGTAGGTGAAAGAAATATGCCCT 60.398 44.000 0.00 0.00 0.00 5.19
3526 4017 6.183361 GGAGTAGGTGAAAGAAATATGCCCTA 60.183 42.308 0.00 0.00 0.00 3.53
3527 4018 6.831976 AGTAGGTGAAAGAAATATGCCCTAG 58.168 40.000 0.00 0.00 0.00 3.02
3528 4019 5.975988 AGGTGAAAGAAATATGCCCTAGA 57.024 39.130 0.00 0.00 0.00 2.43
3529 4020 5.934781 AGGTGAAAGAAATATGCCCTAGAG 58.065 41.667 0.00 0.00 0.00 2.43
3530 4021 5.066593 GGTGAAAGAAATATGCCCTAGAGG 58.933 45.833 0.00 0.00 39.47 3.69
3531 4022 5.398012 GGTGAAAGAAATATGCCCTAGAGGT 60.398 44.000 0.00 0.00 38.26 3.85
3532 4023 6.183361 GGTGAAAGAAATATGCCCTAGAGGTA 60.183 42.308 0.00 0.00 38.26 3.08
3533 4024 7.280356 GTGAAAGAAATATGCCCTAGAGGTAA 58.720 38.462 0.00 0.00 38.26 2.85
3534 4025 7.939588 GTGAAAGAAATATGCCCTAGAGGTAAT 59.060 37.037 0.00 0.00 38.26 1.89
3535 4026 9.166222 TGAAAGAAATATGCCCTAGAGGTAATA 57.834 33.333 0.00 0.00 38.26 0.98
3545 4036 8.097791 TGCCCTAGAGGTAATAATAAAGTTGT 57.902 34.615 0.00 0.00 38.26 3.32
3546 4037 8.554011 TGCCCTAGAGGTAATAATAAAGTTGTT 58.446 33.333 0.00 0.00 38.26 2.83
3608 4099 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
3609 4100 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
3610 4101 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
3611 4102 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
3612 4103 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
3613 4104 7.107542 TGCTAGAATTGTATTAACCGGAAACT 58.892 34.615 9.46 0.00 0.00 2.66
3614 4105 7.608761 TGCTAGAATTGTATTAACCGGAAACTT 59.391 33.333 9.46 0.00 0.00 2.66
3615 4106 7.908601 GCTAGAATTGTATTAACCGGAAACTTG 59.091 37.037 9.46 0.00 0.00 3.16
3616 4107 7.989416 AGAATTGTATTAACCGGAAACTTGA 57.011 32.000 9.46 0.00 0.00 3.02
3617 4108 8.575649 AGAATTGTATTAACCGGAAACTTGAT 57.424 30.769 9.46 0.00 0.00 2.57
3618 4109 9.675464 AGAATTGTATTAACCGGAAACTTGATA 57.325 29.630 9.46 0.00 0.00 2.15
3619 4110 9.712359 GAATTGTATTAACCGGAAACTTGATAC 57.288 33.333 9.46 9.36 0.00 2.24
3620 4111 8.795842 ATTGTATTAACCGGAAACTTGATACA 57.204 30.769 9.46 11.96 30.33 2.29
3621 4112 8.795842 TTGTATTAACCGGAAACTTGATACAT 57.204 30.769 9.46 0.00 31.55 2.29
3622 4113 8.203937 TGTATTAACCGGAAACTTGATACATG 57.796 34.615 9.46 0.00 28.53 3.21
3623 4114 7.825270 TGTATTAACCGGAAACTTGATACATGT 59.175 33.333 9.46 2.69 28.53 3.21
3624 4115 6.489127 TTAACCGGAAACTTGATACATGTG 57.511 37.500 9.46 0.00 0.00 3.21
3625 4116 4.015872 ACCGGAAACTTGATACATGTGT 57.984 40.909 9.46 0.10 0.00 3.72
3626 4117 3.751175 ACCGGAAACTTGATACATGTGTG 59.249 43.478 9.46 0.00 0.00 3.82
3627 4118 3.126858 CCGGAAACTTGATACATGTGTGG 59.873 47.826 9.11 0.00 0.00 4.17
3628 4119 4.000325 CGGAAACTTGATACATGTGTGGA 59.000 43.478 9.11 0.00 0.00 4.02
3629 4120 4.635765 CGGAAACTTGATACATGTGTGGAT 59.364 41.667 9.11 0.00 0.00 3.41
3630 4121 5.815222 CGGAAACTTGATACATGTGTGGATA 59.185 40.000 9.11 0.00 0.00 2.59
3631 4122 6.238103 CGGAAACTTGATACATGTGTGGATAC 60.238 42.308 9.11 0.00 0.00 2.24
3648 4139 6.902224 TGGATACATAGACAAAACATCGTG 57.098 37.500 0.00 0.00 46.17 4.35
3649 4140 6.403049 TGGATACATAGACAAAACATCGTGT 58.597 36.000 0.00 0.00 46.17 4.49
3650 4141 6.533723 TGGATACATAGACAAAACATCGTGTC 59.466 38.462 0.00 0.00 46.17 3.67
3651 4142 6.018994 GGATACATAGACAAAACATCGTGTCC 60.019 42.308 0.36 0.00 44.30 4.02
3652 4143 4.000988 ACATAGACAAAACATCGTGTCCC 58.999 43.478 0.36 0.00 44.30 4.46
3653 4144 2.930826 AGACAAAACATCGTGTCCCT 57.069 45.000 0.36 0.00 44.30 4.20
3654 4145 5.046878 ACATAGACAAAACATCGTGTCCCTA 60.047 40.000 0.36 0.00 44.30 3.53
3655 4146 3.926616 AGACAAAACATCGTGTCCCTAG 58.073 45.455 0.36 0.00 44.30 3.02
3656 4147 3.323979 AGACAAAACATCGTGTCCCTAGT 59.676 43.478 0.36 0.00 44.30 2.57
3657 4148 4.525487 AGACAAAACATCGTGTCCCTAGTA 59.475 41.667 0.36 0.00 44.30 1.82
3658 4149 5.011329 AGACAAAACATCGTGTCCCTAGTAA 59.989 40.000 0.36 0.00 44.30 2.24
3659 4150 5.235516 ACAAAACATCGTGTCCCTAGTAAG 58.764 41.667 0.00 0.00 0.00 2.34
3660 4151 3.521947 AACATCGTGTCCCTAGTAAGC 57.478 47.619 0.00 0.00 0.00 3.09
3661 4152 1.755380 ACATCGTGTCCCTAGTAAGCC 59.245 52.381 0.00 0.00 0.00 4.35
3662 4153 2.032620 CATCGTGTCCCTAGTAAGCCT 58.967 52.381 0.00 0.00 0.00 4.58
3663 4154 2.226962 TCGTGTCCCTAGTAAGCCTT 57.773 50.000 0.00 0.00 0.00 4.35
3664 4155 2.532843 TCGTGTCCCTAGTAAGCCTTT 58.467 47.619 0.00 0.00 0.00 3.11
3665 4156 3.700538 TCGTGTCCCTAGTAAGCCTTTA 58.299 45.455 0.00 0.00 0.00 1.85
3666 4157 3.445096 TCGTGTCCCTAGTAAGCCTTTAC 59.555 47.826 0.00 0.00 39.57 2.01
3668 4159 4.641989 CGTGTCCCTAGTAAGCCTTTACTA 59.358 45.833 5.69 5.69 45.87 1.82
3677 4168 6.947644 AGTAAGCCTTTACTAGACTAGCTC 57.052 41.667 9.52 0.00 45.87 4.09
3678 4169 4.904253 AAGCCTTTACTAGACTAGCTCG 57.096 45.455 9.52 0.00 0.00 5.03
3679 4170 3.888583 AGCCTTTACTAGACTAGCTCGT 58.111 45.455 9.52 0.00 0.00 4.18
3680 4171 4.271661 AGCCTTTACTAGACTAGCTCGTT 58.728 43.478 9.52 0.00 0.00 3.85
3681 4172 5.435291 AGCCTTTACTAGACTAGCTCGTTA 58.565 41.667 9.52 0.00 0.00 3.18
3682 4173 5.884792 AGCCTTTACTAGACTAGCTCGTTAA 59.115 40.000 9.52 0.00 0.00 2.01
3683 4174 6.546772 AGCCTTTACTAGACTAGCTCGTTAAT 59.453 38.462 9.52 0.00 0.00 1.40
3684 4175 6.857451 GCCTTTACTAGACTAGCTCGTTAATC 59.143 42.308 9.52 0.00 0.00 1.75
3685 4176 7.468357 GCCTTTACTAGACTAGCTCGTTAATCA 60.468 40.741 9.52 0.00 0.00 2.57
3686 4177 8.404000 CCTTTACTAGACTAGCTCGTTAATCAA 58.596 37.037 9.52 0.00 0.00 2.57
3687 4178 9.784680 CTTTACTAGACTAGCTCGTTAATCAAA 57.215 33.333 9.52 0.00 0.00 2.69
3688 4179 9.784680 TTTACTAGACTAGCTCGTTAATCAAAG 57.215 33.333 9.52 0.00 0.00 2.77
3689 4180 7.627298 ACTAGACTAGCTCGTTAATCAAAGA 57.373 36.000 9.52 0.00 0.00 2.52
3690 4181 8.228035 ACTAGACTAGCTCGTTAATCAAAGAT 57.772 34.615 9.52 0.00 0.00 2.40
3691 4182 8.132362 ACTAGACTAGCTCGTTAATCAAAGATG 58.868 37.037 9.52 0.00 0.00 2.90
3692 4183 6.276847 AGACTAGCTCGTTAATCAAAGATGG 58.723 40.000 0.00 0.00 0.00 3.51
3693 4184 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
3694 4185 7.068348 AGACTAGCTCGTTAATCAAAGATGGTA 59.932 37.037 0.00 0.00 0.00 3.25
3695 4186 7.553334 ACTAGCTCGTTAATCAAAGATGGTAA 58.447 34.615 0.00 0.00 0.00 2.85
3696 4187 8.038944 ACTAGCTCGTTAATCAAAGATGGTAAA 58.961 33.333 0.00 0.00 0.00 2.01
3697 4188 7.308782 AGCTCGTTAATCAAAGATGGTAAAG 57.691 36.000 0.00 0.00 0.00 1.85
3698 4189 6.879458 AGCTCGTTAATCAAAGATGGTAAAGT 59.121 34.615 0.00 0.00 0.00 2.66
3699 4190 7.390718 AGCTCGTTAATCAAAGATGGTAAAGTT 59.609 33.333 0.00 0.00 0.00 2.66
3700 4191 8.021396 GCTCGTTAATCAAAGATGGTAAAGTTT 58.979 33.333 0.00 0.00 0.00 2.66
3701 4192 9.543018 CTCGTTAATCAAAGATGGTAAAGTTTC 57.457 33.333 0.00 0.00 0.00 2.78
3702 4193 8.508875 TCGTTAATCAAAGATGGTAAAGTTTCC 58.491 33.333 0.00 0.00 0.00 3.13
3703 4194 8.512138 CGTTAATCAAAGATGGTAAAGTTTCCT 58.488 33.333 0.00 0.00 0.00 3.36
3707 4198 7.754851 TCAAAGATGGTAAAGTTTCCTAACC 57.245 36.000 0.00 0.00 34.71 2.85
3708 4199 7.291566 TCAAAGATGGTAAAGTTTCCTAACCA 58.708 34.615 9.80 9.80 39.73 3.67
3709 4200 7.947890 TCAAAGATGGTAAAGTTTCCTAACCAT 59.052 33.333 17.07 17.07 44.38 3.55
3710 4201 9.238368 CAAAGATGGTAAAGTTTCCTAACCATA 57.762 33.333 17.07 0.00 42.96 2.74
3711 4202 9.462606 AAAGATGGTAAAGTTTCCTAACCATAG 57.537 33.333 17.07 0.00 42.96 2.23
3712 4203 8.388656 AGATGGTAAAGTTTCCTAACCATAGA 57.611 34.615 17.07 0.00 42.96 1.98
3713 4204 8.265764 AGATGGTAAAGTTTCCTAACCATAGAC 58.734 37.037 17.07 8.32 42.96 2.59
3714 4205 7.319052 TGGTAAAGTTTCCTAACCATAGACA 57.681 36.000 4.20 0.00 33.90 3.41
3715 4206 7.924541 TGGTAAAGTTTCCTAACCATAGACAT 58.075 34.615 4.20 0.00 33.90 3.06
3716 4207 7.827236 TGGTAAAGTTTCCTAACCATAGACATG 59.173 37.037 4.20 0.00 33.90 3.21
3717 4208 7.827729 GGTAAAGTTTCCTAACCATAGACATGT 59.172 37.037 0.00 0.00 34.71 3.21
3718 4209 7.687941 AAAGTTTCCTAACCATAGACATGTG 57.312 36.000 1.15 0.00 34.71 3.21
3719 4210 6.620877 AGTTTCCTAACCATAGACATGTGA 57.379 37.500 1.15 0.00 34.71 3.58
3720 4211 7.016153 AGTTTCCTAACCATAGACATGTGAA 57.984 36.000 1.15 0.00 34.71 3.18
3721 4212 7.633789 AGTTTCCTAACCATAGACATGTGAAT 58.366 34.615 1.15 0.00 34.71 2.57
3722 4213 8.109634 AGTTTCCTAACCATAGACATGTGAATT 58.890 33.333 1.15 0.00 34.71 2.17
3723 4214 7.864108 TTCCTAACCATAGACATGTGAATTG 57.136 36.000 1.15 0.00 0.00 2.32
3724 4215 6.957631 TCCTAACCATAGACATGTGAATTGT 58.042 36.000 1.15 0.00 0.00 2.71
3725 4216 7.047891 TCCTAACCATAGACATGTGAATTGTC 58.952 38.462 1.15 0.00 43.05 3.18
3726 4217 6.823182 CCTAACCATAGACATGTGAATTGTCA 59.177 38.462 1.15 0.00 44.73 3.58
3727 4218 7.500227 CCTAACCATAGACATGTGAATTGTCAT 59.500 37.037 1.15 0.00 44.73 3.06
3728 4219 7.707624 AACCATAGACATGTGAATTGTCATT 57.292 32.000 1.15 0.00 44.73 2.57
3729 4220 7.707624 ACCATAGACATGTGAATTGTCATTT 57.292 32.000 1.15 0.00 44.73 2.32
3730 4221 7.541162 ACCATAGACATGTGAATTGTCATTTG 58.459 34.615 1.15 1.61 44.73 2.32
3731 4222 7.394077 ACCATAGACATGTGAATTGTCATTTGA 59.606 33.333 1.15 0.00 44.73 2.69
3732 4223 8.410912 CCATAGACATGTGAATTGTCATTTGAT 58.589 33.333 1.15 0.00 44.73 2.57
3733 4224 9.233232 CATAGACATGTGAATTGTCATTTGATG 57.767 33.333 1.15 0.00 44.73 3.07
3734 4225 7.457024 AGACATGTGAATTGTCATTTGATGA 57.543 32.000 1.15 0.00 44.73 2.92
3735 4226 7.888424 AGACATGTGAATTGTCATTTGATGAA 58.112 30.769 1.15 0.00 44.73 2.57
3736 4227 7.811236 AGACATGTGAATTGTCATTTGATGAAC 59.189 33.333 1.15 0.00 44.73 3.18
3737 4228 6.583427 ACATGTGAATTGTCATTTGATGAACG 59.417 34.615 0.00 0.00 41.69 3.95
3738 4229 6.311055 TGTGAATTGTCATTTGATGAACGA 57.689 33.333 0.00 0.00 41.69 3.85
3739 4230 6.372981 TGTGAATTGTCATTTGATGAACGAG 58.627 36.000 0.00 0.00 41.69 4.18
3740 4231 6.204495 TGTGAATTGTCATTTGATGAACGAGA 59.796 34.615 0.00 0.00 41.69 4.04
3741 4232 7.094677 TGTGAATTGTCATTTGATGAACGAGAT 60.095 33.333 0.00 0.00 41.69 2.75
3742 4233 7.427606 GTGAATTGTCATTTGATGAACGAGATC 59.572 37.037 0.00 0.00 41.69 2.75
3743 4234 6.990341 ATTGTCATTTGATGAACGAGATCA 57.010 33.333 0.00 0.00 41.69 2.92
3744 4235 5.784750 TGTCATTTGATGAACGAGATCAC 57.215 39.130 0.00 0.00 41.69 3.06
3745 4236 5.237048 TGTCATTTGATGAACGAGATCACA 58.763 37.500 0.00 0.00 41.69 3.58
3746 4237 5.876460 TGTCATTTGATGAACGAGATCACAT 59.124 36.000 0.00 0.00 41.69 3.21
3747 4238 6.036408 TGTCATTTGATGAACGAGATCACATC 59.964 38.462 0.00 0.00 41.69 3.06
3748 4239 6.036408 GTCATTTGATGAACGAGATCACATCA 59.964 38.462 0.00 0.00 44.40 3.07
3749 4240 6.764560 TCATTTGATGAACGAGATCACATCAT 59.235 34.615 0.00 11.72 45.05 2.45
3750 4241 6.990341 TTTGATGAACGAGATCACATCATT 57.010 33.333 0.00 0.00 45.05 2.57
3751 4242 8.553696 CATTTGATGAACGAGATCACATCATTA 58.446 33.333 0.00 7.75 45.05 1.90
3752 4243 7.704789 TTGATGAACGAGATCACATCATTAG 57.295 36.000 0.00 0.00 45.05 1.73
3753 4244 6.218746 TGATGAACGAGATCACATCATTAGG 58.781 40.000 0.00 0.00 42.31 2.69
3754 4245 5.852282 TGAACGAGATCACATCATTAGGA 57.148 39.130 0.00 0.00 0.00 2.94
3755 4246 5.836347 TGAACGAGATCACATCATTAGGAG 58.164 41.667 0.00 0.00 0.00 3.69
3756 4247 5.594317 TGAACGAGATCACATCATTAGGAGA 59.406 40.000 0.00 0.00 0.00 3.71
3757 4248 6.096846 TGAACGAGATCACATCATTAGGAGAA 59.903 38.462 0.00 0.00 0.00 2.87
3758 4249 6.662865 ACGAGATCACATCATTAGGAGAAT 57.337 37.500 0.00 0.00 0.00 2.40
3759 4250 7.767250 ACGAGATCACATCATTAGGAGAATA 57.233 36.000 0.00 0.00 0.00 1.75
3760 4251 8.183104 ACGAGATCACATCATTAGGAGAATAA 57.817 34.615 0.00 0.00 0.00 1.40
3761 4252 8.811017 ACGAGATCACATCATTAGGAGAATAAT 58.189 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.143278 GCAAAATGACGACGACCTTTTATTTT 59.857 34.615 0.00 0.91 0.00 1.82
17 18 4.214545 TGCAAAATGACGACGACCTTTTAT 59.785 37.500 0.00 0.00 0.00 1.40
25 26 2.348125 CGACTTTGCAAAATGACGACGA 60.348 45.455 13.84 0.00 0.00 4.20
110 117 1.547472 AAGGGCGCTTAAGGGTACGT 61.547 55.000 15.29 12.06 0.00 3.57
111 118 1.087771 CAAGGGCGCTTAAGGGTACG 61.088 60.000 16.48 8.41 0.00 3.67
112 119 0.035725 ACAAGGGCGCTTAAGGGTAC 60.036 55.000 16.48 13.04 0.00 3.34
113 120 0.694196 AACAAGGGCGCTTAAGGGTA 59.306 50.000 16.48 0.00 0.00 3.69
120 127 3.807071 CACAATTTTAAACAAGGGCGCTT 59.193 39.130 10.73 10.73 0.00 4.68
138 145 2.229062 GAGACACGAGAGGACATCACAA 59.771 50.000 0.00 0.00 0.00 3.33
143 150 1.740585 CGAAGAGACACGAGAGGACAT 59.259 52.381 0.00 0.00 0.00 3.06
149 156 2.868196 CGCCGAAGAGACACGAGA 59.132 61.111 0.00 0.00 0.00 4.04
173 180 7.023171 ACCATATAAAACCATATCCGCCTTA 57.977 36.000 0.00 0.00 0.00 2.69
256 267 0.535553 CTTTCCGTTCGGTGGGGAAA 60.536 55.000 11.04 4.59 45.04 3.13
269 284 5.636121 TGTAGTGTATGTTTGTAGCTTTCCG 59.364 40.000 0.00 0.00 0.00 4.30
292 307 3.009140 GCATCGGCGATCAGTGTG 58.991 61.111 21.25 10.65 0.00 3.82
309 335 0.650512 ACGTGTCTTTCACTTGTGCG 59.349 50.000 0.00 0.00 44.16 5.34
334 360 1.333619 ACGTCAATGTTCACAGGTTGC 59.666 47.619 0.00 0.00 0.00 4.17
337 363 2.158957 AGACACGTCAATGTTCACAGGT 60.159 45.455 0.00 0.00 31.24 4.00
347 373 7.041576 GGAAAAAGTTAGGTTAGACACGTCAAT 60.042 37.037 0.00 0.00 0.00 2.57
397 423 6.362248 CCCTCCTTTTCGGAAGGAAATAATA 58.638 40.000 17.90 0.30 45.02 0.98
398 424 5.201243 CCCTCCTTTTCGGAAGGAAATAAT 58.799 41.667 17.90 0.00 45.02 1.28
401 427 2.884304 GCCCTCCTTTTCGGAAGGAAAT 60.884 50.000 17.90 0.00 45.02 2.17
405 431 0.038310 AAGCCCTCCTTTTCGGAAGG 59.962 55.000 11.02 11.02 45.00 3.46
442 468 1.664321 CTGCAAATGAGAGGCTGGCC 61.664 60.000 3.00 3.00 0.00 5.36
508 549 3.242016 CCATGCGTACATACAACACTACG 59.758 47.826 0.00 0.00 33.67 3.51
545 591 6.091169 GTGGAATTATGCATTTTGGAACACAG 59.909 38.462 3.54 0.00 39.29 3.66
558 604 3.694072 GCTACCACTTGTGGAATTATGCA 59.306 43.478 24.67 0.00 0.00 3.96
563 609 1.165270 GCGCTACCACTTGTGGAATT 58.835 50.000 24.67 6.70 0.00 2.17
690 736 6.772716 AGCTCCCGATGTTGAATACAATTATT 59.227 34.615 0.00 0.00 40.89 1.40
693 739 4.336433 CAGCTCCCGATGTTGAATACAATT 59.664 41.667 0.00 0.00 40.89 2.32
694 740 3.879295 CAGCTCCCGATGTTGAATACAAT 59.121 43.478 0.00 0.00 40.89 2.71
696 742 2.905075 CAGCTCCCGATGTTGAATACA 58.095 47.619 0.00 0.00 41.97 2.29
697 743 1.599542 GCAGCTCCCGATGTTGAATAC 59.400 52.381 0.00 0.00 0.00 1.89
699 745 0.254178 AGCAGCTCCCGATGTTGAAT 59.746 50.000 0.00 0.00 0.00 2.57
918 976 3.940209 AGTCTCTGAGAAGTGAAGCTG 57.060 47.619 9.31 0.00 0.00 4.24
941 1003 3.053619 GGTTTCTCTCTCTCTCCCTCTCT 60.054 52.174 0.00 0.00 0.00 3.10
947 1009 1.474879 CCACGGTTTCTCTCTCTCTCC 59.525 57.143 0.00 0.00 0.00 3.71
961 1054 2.026169 TCTCTATCTCACTCACCACGGT 60.026 50.000 0.00 0.00 0.00 4.83
982 1075 3.593328 CCCATCCTCTCCTCTCTCTCTAT 59.407 52.174 0.00 0.00 0.00 1.98
983 1076 2.986019 CCCATCCTCTCCTCTCTCTCTA 59.014 54.545 0.00 0.00 0.00 2.43
984 1077 1.782752 CCCATCCTCTCCTCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
985 1078 1.203050 CCCCATCCTCTCCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
986 1079 0.859760 CCCCATCCTCTCCTCTCTCT 59.140 60.000 0.00 0.00 0.00 3.10
987 1080 0.856982 TCCCCATCCTCTCCTCTCTC 59.143 60.000 0.00 0.00 0.00 3.20
988 1081 0.859760 CTCCCCATCCTCTCCTCTCT 59.140 60.000 0.00 0.00 0.00 3.10
989 1082 0.178935 CCTCCCCATCCTCTCCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
1023 1116 0.617413 AGAAGCAGTCCATCACCCTG 59.383 55.000 0.00 0.00 0.00 4.45
1197 1290 7.286775 TGTTAATTCTTGTTTACCTTTGGCTCT 59.713 33.333 0.00 0.00 0.00 4.09
1223 1316 7.319052 TCTTAGATAGAGAGATAGAACGGGT 57.681 40.000 0.00 0.00 0.00 5.28
1311 1441 0.597377 CGCATCCGTAGCAGTGCATA 60.597 55.000 19.20 4.02 37.44 3.14
1408 1538 2.957402 AAGAATCTCAACACTGCCCA 57.043 45.000 0.00 0.00 0.00 5.36
1480 1614 9.753674 TTTGGAGTGAAATGATAGGAACTTTAT 57.246 29.630 0.00 0.00 41.75 1.40
1562 1697 5.353123 TGTCAAATTGTCCCTTAGCGAATAC 59.647 40.000 0.00 0.00 0.00 1.89
1564 1699 4.331968 TGTCAAATTGTCCCTTAGCGAAT 58.668 39.130 0.00 0.00 0.00 3.34
1565 1700 3.745799 TGTCAAATTGTCCCTTAGCGAA 58.254 40.909 0.00 0.00 0.00 4.70
1566 1701 3.334691 CTGTCAAATTGTCCCTTAGCGA 58.665 45.455 0.00 0.00 0.00 4.93
1568 1703 3.084786 AGCTGTCAAATTGTCCCTTAGC 58.915 45.455 0.00 0.00 0.00 3.09
1569 1704 4.520492 ACAAGCTGTCAAATTGTCCCTTAG 59.480 41.667 0.00 0.00 31.72 2.18
1570 1705 4.469657 ACAAGCTGTCAAATTGTCCCTTA 58.530 39.130 0.00 0.00 31.72 2.69
1571 1706 3.299503 ACAAGCTGTCAAATTGTCCCTT 58.700 40.909 0.00 0.00 31.72 3.95
1580 1715 4.221703 TCAAGGGAAAAACAAGCTGTCAAA 59.778 37.500 0.00 0.00 0.00 2.69
1597 1739 5.735354 GCAATTGCAGTGAGATAATCAAGGG 60.735 44.000 25.36 0.00 39.44 3.95
1650 1792 7.584122 AATTAGAGTAAGATACGAGGCAGAA 57.416 36.000 0.00 0.00 0.00 3.02
1703 1847 4.696877 TGGCTGTGTCTGAATTATCAACAG 59.303 41.667 5.27 5.27 41.62 3.16
1721 1865 2.806608 AAGAAATGCACACTTGGCTG 57.193 45.000 0.00 0.00 0.00 4.85
1871 2019 5.507315 CCACGCCACTCTACTTTGAAAAATT 60.507 40.000 0.00 0.00 0.00 1.82
1872 2020 4.023193 CCACGCCACTCTACTTTGAAAAAT 60.023 41.667 0.00 0.00 0.00 1.82
1873 2021 3.314080 CCACGCCACTCTACTTTGAAAAA 59.686 43.478 0.00 0.00 0.00 1.94
1920 2072 2.508751 GCTCCTATCCCCGTGACCC 61.509 68.421 0.00 0.00 0.00 4.46
1923 2075 3.224324 GCGCTCCTATCCCCGTGA 61.224 66.667 0.00 0.00 0.00 4.35
1924 2076 3.088941 TTGCGCTCCTATCCCCGTG 62.089 63.158 9.73 0.00 0.00 4.94
1925 2077 2.762459 TTGCGCTCCTATCCCCGT 60.762 61.111 9.73 0.00 0.00 5.28
1926 2078 2.280186 GTTGCGCTCCTATCCCCG 60.280 66.667 9.73 0.00 0.00 5.73
1927 2079 2.280186 CGTTGCGCTCCTATCCCC 60.280 66.667 9.73 0.00 0.00 4.81
1928 2080 1.591863 GACGTTGCGCTCCTATCCC 60.592 63.158 9.73 0.00 0.00 3.85
1929 2081 0.595310 GAGACGTTGCGCTCCTATCC 60.595 60.000 9.73 0.00 0.00 2.59
1930 2082 0.100682 TGAGACGTTGCGCTCCTATC 59.899 55.000 9.73 0.00 32.33 2.08
2047 2247 1.408969 AGCCCACCAACGAAATTTGT 58.591 45.000 0.00 0.00 0.00 2.83
2060 2285 2.671619 TGCTTGCCGTTAGCCCAC 60.672 61.111 0.00 0.00 42.71 4.61
2069 2294 1.280746 CTGTGTTCACTGCTTGCCG 59.719 57.895 4.59 0.00 0.00 5.69
2073 2298 1.439353 CGTGGCTGTGTTCACTGCTT 61.439 55.000 25.29 0.00 35.36 3.91
2075 2300 2.633657 CGTGGCTGTGTTCACTGC 59.366 61.111 20.85 20.85 0.00 4.40
2127 2352 2.069273 GCCACAACAGTAGCACTAGTG 58.931 52.381 18.93 18.93 41.16 2.74
2128 2353 1.691976 TGCCACAACAGTAGCACTAGT 59.308 47.619 0.00 0.00 0.00 2.57
2129 2354 2.455674 TGCCACAACAGTAGCACTAG 57.544 50.000 0.00 0.00 0.00 2.57
2130 2355 2.038426 ACATGCCACAACAGTAGCACTA 59.962 45.455 0.00 0.00 38.21 2.74
2131 2356 1.202806 ACATGCCACAACAGTAGCACT 60.203 47.619 0.00 0.00 38.21 4.40
2132 2357 1.238439 ACATGCCACAACAGTAGCAC 58.762 50.000 0.00 0.00 38.21 4.40
2133 2358 1.979855 AACATGCCACAACAGTAGCA 58.020 45.000 0.00 0.00 40.00 3.49
2134 2359 2.159707 CGTAACATGCCACAACAGTAGC 60.160 50.000 0.00 0.00 0.00 3.58
2135 2360 2.415168 CCGTAACATGCCACAACAGTAG 59.585 50.000 0.00 0.00 0.00 2.57
2233 2469 2.663852 AAAACGACACCGGAGCCG 60.664 61.111 9.46 7.45 40.78 5.52
2299 2538 2.827051 CGGTATCGCGAACGGAGGA 61.827 63.158 15.24 0.00 40.63 3.71
2346 2597 2.436417 GGTACCAACATGTGCAGATGT 58.564 47.619 22.84 22.84 38.23 3.06
2362 2613 2.745884 TGCACATGCGCAGGGTAC 60.746 61.111 27.21 16.58 45.83 3.34
2510 2983 6.358294 CCGAACTGATAATATCTATCGATGCG 59.642 42.308 8.54 0.00 34.03 4.73
2534 3012 7.184779 GGCTCGTAAATCAACATAGTTTAACC 58.815 38.462 0.00 0.00 0.00 2.85
2541 3019 4.360563 ACTCGGCTCGTAAATCAACATAG 58.639 43.478 0.00 0.00 0.00 2.23
2564 3042 3.559657 GAGATGATCGCCGTCCGGG 62.560 68.421 7.97 0.00 37.59 5.73
2565 3043 2.049985 GAGATGATCGCCGTCCGG 60.050 66.667 0.24 0.24 37.59 5.14
2566 3044 1.371022 CAGAGATGATCGCCGTCCG 60.371 63.158 0.00 0.00 38.61 4.79
2567 3045 0.318275 GTCAGAGATGATCGCCGTCC 60.318 60.000 0.00 0.00 0.00 4.79
2568 3046 0.382158 TGTCAGAGATGATCGCCGTC 59.618 55.000 0.00 0.00 0.00 4.79
2569 3047 1.035923 ATGTCAGAGATGATCGCCGT 58.964 50.000 0.00 0.00 0.00 5.68
2570 3048 2.145958 AATGTCAGAGATGATCGCCG 57.854 50.000 0.00 0.00 0.00 6.46
2582 3065 6.642131 CACACAGGAAAATAACCAAATGTCAG 59.358 38.462 0.00 0.00 0.00 3.51
2584 3067 6.512297 ACACACAGGAAAATAACCAAATGTC 58.488 36.000 0.00 0.00 0.00 3.06
2591 3074 4.766404 CTGGACACACAGGAAAATAACC 57.234 45.455 0.00 0.00 34.84 2.85
2644 3128 0.666577 CCGTCACGACCACCTTCTTC 60.667 60.000 0.00 0.00 0.00 2.87
2740 3224 4.144418 CTACTCGGAGTCGGGGAG 57.856 66.667 15.05 2.00 42.00 4.30
2747 3231 4.603989 TCATCGTCTATCTACTCGGAGT 57.396 45.455 15.95 15.95 0.00 3.85
2765 3249 6.174049 CCTATCAGCTTGTCATCATCATCAT 58.826 40.000 0.00 0.00 0.00 2.45
2766 3250 5.512576 CCCTATCAGCTTGTCATCATCATCA 60.513 44.000 0.00 0.00 0.00 3.07
2767 3251 4.936411 CCCTATCAGCTTGTCATCATCATC 59.064 45.833 0.00 0.00 0.00 2.92
2778 3262 0.620556 ACACCCACCCTATCAGCTTG 59.379 55.000 0.00 0.00 0.00 4.01
2872 3358 2.365293 GTTTCTTCCTTGCCATGGTTGT 59.635 45.455 14.67 0.00 0.00 3.32
2899 3385 2.447811 TGGCCCCCTAGTTACAAACTTT 59.552 45.455 0.00 0.00 42.81 2.66
2903 3389 1.356398 CCTTGGCCCCCTAGTTACAAA 59.644 52.381 0.00 0.00 0.00 2.83
2915 3401 1.746991 CGCTCTTCTTCCTTGGCCC 60.747 63.158 0.00 0.00 0.00 5.80
2917 3403 1.916697 GCACGCTCTTCTTCCTTGGC 61.917 60.000 0.00 0.00 0.00 4.52
2932 3418 1.821216 ACCAATTAGACCCAAGCACG 58.179 50.000 0.00 0.00 0.00 5.34
2936 3422 7.512992 AGATAGATCAACCAATTAGACCCAAG 58.487 38.462 0.00 0.00 0.00 3.61
3042 3532 3.508845 ACTGGGACAAGTATGCAAAGT 57.491 42.857 0.00 0.00 38.70 2.66
3129 3619 3.797039 CATCGTTAGGATGCAAGGAGAA 58.203 45.455 1.87 0.00 45.57 2.87
3142 3632 1.478137 GTGCGTAGAGGCATCGTTAG 58.522 55.000 0.00 0.00 45.99 2.34
3196 3686 3.543665 AGCAACCAAACAACATGCATTT 58.456 36.364 0.00 0.00 39.42 2.32
3198 3688 2.873472 CAAGCAACCAAACAACATGCAT 59.127 40.909 0.00 0.00 39.42 3.96
3332 3822 2.874010 ATTGCTCGTCGGCGACTCTG 62.874 60.000 33.90 23.92 42.81 3.35
3333 3823 2.600122 GATTGCTCGTCGGCGACTCT 62.600 60.000 33.90 14.12 42.81 3.24
3343 3833 1.589993 CGCCGATGAGATTGCTCGT 60.590 57.895 0.00 0.00 44.33 4.18
3349 3839 1.226974 CCGTGTCGCCGATGAGATT 60.227 57.895 0.00 0.00 0.00 2.40
3392 3882 1.595109 CACACGGACTTGCTCTGCA 60.595 57.895 0.00 0.00 36.47 4.41
3399 3889 2.679450 TCGTTAATCCACACGGACTTG 58.321 47.619 0.00 0.00 46.79 3.16
3413 3903 4.204012 CCCAATGCCTTCCTATTCGTTAA 58.796 43.478 0.00 0.00 0.00 2.01
3430 3920 0.401738 CCATCGTCCTATGCCCCAAT 59.598 55.000 0.00 0.00 0.00 3.16
3434 3924 1.071471 CCACCATCGTCCTATGCCC 59.929 63.158 0.00 0.00 0.00 5.36
3439 3929 2.026729 TGCATTTTCCACCATCGTCCTA 60.027 45.455 0.00 0.00 0.00 2.94
3444 3934 0.523968 CGCTGCATTTTCCACCATCG 60.524 55.000 0.00 0.00 0.00 3.84
3462 3953 2.256591 GGATGCCATGGCTAGCACG 61.257 63.158 35.53 3.56 42.84 5.34
3467 3958 0.471191 CACTGAGGATGCCATGGCTA 59.529 55.000 35.53 22.71 42.51 3.93
3468 3959 1.226542 CACTGAGGATGCCATGGCT 59.773 57.895 35.53 21.86 42.51 4.75
3480 3971 3.127203 CCTCCACGTTCTACTACACTGAG 59.873 52.174 0.00 0.00 0.00 3.35
3493 3984 2.005370 TTCACCTACTCCTCCACGTT 57.995 50.000 0.00 0.00 0.00 3.99
3497 3988 6.632672 GCATATTTCTTTCACCTACTCCTCCA 60.633 42.308 0.00 0.00 0.00 3.86
3505 3996 6.043243 CCTCTAGGGCATATTTCTTTCACCTA 59.957 42.308 0.00 0.00 0.00 3.08
3509 4000 5.975988 ACCTCTAGGGCATATTTCTTTCA 57.024 39.130 0.20 0.00 40.27 2.69
3519 4010 8.724310 ACAACTTTATTATTACCTCTAGGGCAT 58.276 33.333 0.20 0.00 40.27 4.40
3520 4011 8.097791 ACAACTTTATTATTACCTCTAGGGCA 57.902 34.615 0.20 0.00 40.27 5.36
3521 4012 8.975663 AACAACTTTATTATTACCTCTAGGGC 57.024 34.615 0.20 0.00 40.27 5.19
3582 4073 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
3583 4074 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
3584 4075 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
3585 4076 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
3586 4077 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
3587 4078 7.773690 AGTTTCCGGTTAATACAATTCTAGCAT 59.226 33.333 0.00 0.00 0.00 3.79
3588 4079 7.107542 AGTTTCCGGTTAATACAATTCTAGCA 58.892 34.615 0.00 0.00 0.00 3.49
3589 4080 7.549615 AGTTTCCGGTTAATACAATTCTAGC 57.450 36.000 0.00 0.00 0.00 3.42
3590 4081 9.158233 TCAAGTTTCCGGTTAATACAATTCTAG 57.842 33.333 0.00 0.00 0.00 2.43
3591 4082 9.675464 ATCAAGTTTCCGGTTAATACAATTCTA 57.325 29.630 0.00 0.00 0.00 2.10
3592 4083 7.989416 TCAAGTTTCCGGTTAATACAATTCT 57.011 32.000 0.00 0.00 0.00 2.40
3593 4084 9.712359 GTATCAAGTTTCCGGTTAATACAATTC 57.288 33.333 0.00 0.00 0.00 2.17
3594 4085 9.233649 TGTATCAAGTTTCCGGTTAATACAATT 57.766 29.630 0.00 0.00 0.00 2.32
3595 4086 8.795842 TGTATCAAGTTTCCGGTTAATACAAT 57.204 30.769 0.00 0.00 0.00 2.71
3596 4087 8.670135 CATGTATCAAGTTTCCGGTTAATACAA 58.330 33.333 0.00 0.00 33.52 2.41
3597 4088 7.825270 ACATGTATCAAGTTTCCGGTTAATACA 59.175 33.333 0.00 0.88 34.10 2.29
3598 4089 8.120465 CACATGTATCAAGTTTCCGGTTAATAC 58.880 37.037 0.00 0.00 0.00 1.89
3599 4090 7.825270 ACACATGTATCAAGTTTCCGGTTAATA 59.175 33.333 0.00 0.00 0.00 0.98
3600 4091 6.657541 ACACATGTATCAAGTTTCCGGTTAAT 59.342 34.615 0.00 0.00 0.00 1.40
3601 4092 5.998981 ACACATGTATCAAGTTTCCGGTTAA 59.001 36.000 0.00 0.00 0.00 2.01
3602 4093 5.410132 CACACATGTATCAAGTTTCCGGTTA 59.590 40.000 0.00 0.00 0.00 2.85
3603 4094 4.215399 CACACATGTATCAAGTTTCCGGTT 59.785 41.667 0.00 0.00 0.00 4.44
3604 4095 3.751175 CACACATGTATCAAGTTTCCGGT 59.249 43.478 0.00 0.00 0.00 5.28
3605 4096 3.126858 CCACACATGTATCAAGTTTCCGG 59.873 47.826 0.00 0.00 0.00 5.14
3606 4097 4.000325 TCCACACATGTATCAAGTTTCCG 59.000 43.478 0.00 0.00 0.00 4.30
3607 4098 6.597672 TGTATCCACACATGTATCAAGTTTCC 59.402 38.462 0.00 0.00 0.00 3.13
3608 4099 7.609760 TGTATCCACACATGTATCAAGTTTC 57.390 36.000 0.00 0.00 0.00 2.78
3609 4100 9.330063 CTATGTATCCACACATGTATCAAGTTT 57.670 33.333 0.00 0.00 39.46 2.66
3610 4101 8.704668 TCTATGTATCCACACATGTATCAAGTT 58.295 33.333 0.00 0.00 39.46 2.66
3611 4102 8.144478 GTCTATGTATCCACACATGTATCAAGT 58.856 37.037 0.00 0.00 39.46 3.16
3612 4103 8.143835 TGTCTATGTATCCACACATGTATCAAG 58.856 37.037 0.00 0.00 39.46 3.02
3613 4104 8.017418 TGTCTATGTATCCACACATGTATCAA 57.983 34.615 0.00 0.00 39.46 2.57
3614 4105 7.595819 TGTCTATGTATCCACACATGTATCA 57.404 36.000 0.00 0.00 39.46 2.15
3615 4106 8.887036 TTTGTCTATGTATCCACACATGTATC 57.113 34.615 0.00 0.00 39.46 2.24
3616 4107 9.109393 GTTTTGTCTATGTATCCACACATGTAT 57.891 33.333 0.00 0.00 39.46 2.29
3617 4108 8.097662 TGTTTTGTCTATGTATCCACACATGTA 58.902 33.333 0.00 0.00 39.46 2.29
3618 4109 6.939730 TGTTTTGTCTATGTATCCACACATGT 59.060 34.615 0.00 0.00 39.46 3.21
3619 4110 7.376435 TGTTTTGTCTATGTATCCACACATG 57.624 36.000 0.00 0.00 39.46 3.21
3620 4111 7.011389 CGATGTTTTGTCTATGTATCCACACAT 59.989 37.037 0.00 0.00 41.88 3.21
3621 4112 6.312672 CGATGTTTTGTCTATGTATCCACACA 59.687 38.462 0.00 0.00 37.54 3.72
3622 4113 6.312918 ACGATGTTTTGTCTATGTATCCACAC 59.687 38.462 0.00 0.00 37.54 3.82
3623 4114 6.312672 CACGATGTTTTGTCTATGTATCCACA 59.687 38.462 0.00 0.00 39.52 4.17
3624 4115 6.312918 ACACGATGTTTTGTCTATGTATCCAC 59.687 38.462 0.00 0.00 0.00 4.02
3625 4116 6.403049 ACACGATGTTTTGTCTATGTATCCA 58.597 36.000 0.00 0.00 0.00 3.41
3626 4117 6.018994 GGACACGATGTTTTGTCTATGTATCC 60.019 42.308 0.00 0.00 41.65 2.59
3627 4118 6.018994 GGGACACGATGTTTTGTCTATGTATC 60.019 42.308 0.00 0.00 41.65 2.24
3628 4119 5.815740 GGGACACGATGTTTTGTCTATGTAT 59.184 40.000 0.00 0.00 41.65 2.29
3629 4120 5.046878 AGGGACACGATGTTTTGTCTATGTA 60.047 40.000 0.00 0.00 41.65 2.29
3630 4121 4.000988 GGGACACGATGTTTTGTCTATGT 58.999 43.478 0.00 0.00 41.65 2.29
3631 4122 4.253685 AGGGACACGATGTTTTGTCTATG 58.746 43.478 0.00 0.00 41.65 2.23
3632 4123 4.553330 AGGGACACGATGTTTTGTCTAT 57.447 40.909 0.00 0.00 41.65 1.98
3633 4124 4.525487 ACTAGGGACACGATGTTTTGTCTA 59.475 41.667 0.00 0.00 41.65 2.59
3634 4125 2.930826 AGGGACACGATGTTTTGTCT 57.069 45.000 0.00 0.00 41.65 3.41
3635 4126 3.660865 ACTAGGGACACGATGTTTTGTC 58.339 45.455 0.00 0.00 41.28 3.18
3636 4127 3.764237 ACTAGGGACACGATGTTTTGT 57.236 42.857 0.00 0.00 0.00 2.83
3637 4128 4.092968 GCTTACTAGGGACACGATGTTTTG 59.907 45.833 0.00 0.00 0.00 2.44
3638 4129 4.251268 GCTTACTAGGGACACGATGTTTT 58.749 43.478 0.00 0.00 0.00 2.43
3639 4130 3.369157 GGCTTACTAGGGACACGATGTTT 60.369 47.826 0.00 0.00 0.00 2.83
3640 4131 2.167900 GGCTTACTAGGGACACGATGTT 59.832 50.000 0.00 0.00 0.00 2.71
3641 4132 1.755380 GGCTTACTAGGGACACGATGT 59.245 52.381 0.00 0.00 0.00 3.06
3642 4133 2.032620 AGGCTTACTAGGGACACGATG 58.967 52.381 0.00 0.00 0.00 3.84
3643 4134 2.456073 AGGCTTACTAGGGACACGAT 57.544 50.000 0.00 0.00 0.00 3.73
3644 4135 2.226962 AAGGCTTACTAGGGACACGA 57.773 50.000 0.00 0.00 0.00 4.35
3645 4136 3.446516 AGTAAAGGCTTACTAGGGACACG 59.553 47.826 0.00 0.00 44.85 4.49
3653 4144 6.705381 CGAGCTAGTCTAGTAAAGGCTTACTA 59.295 42.308 0.00 8.08 44.85 1.82
3655 4146 5.296531 ACGAGCTAGTCTAGTAAAGGCTTAC 59.703 44.000 0.00 0.00 36.49 2.34
3656 4147 5.435291 ACGAGCTAGTCTAGTAAAGGCTTA 58.565 41.667 0.00 0.00 36.49 3.09
3657 4148 4.271661 ACGAGCTAGTCTAGTAAAGGCTT 58.728 43.478 8.68 0.00 36.49 4.35
3658 4149 3.888583 ACGAGCTAGTCTAGTAAAGGCT 58.111 45.455 8.68 0.00 44.37 4.58
3659 4150 4.635833 AACGAGCTAGTCTAGTAAAGGC 57.364 45.455 8.68 0.00 30.15 4.35
3660 4151 7.928103 TGATTAACGAGCTAGTCTAGTAAAGG 58.072 38.462 8.68 0.00 30.15 3.11
3661 4152 9.784680 TTTGATTAACGAGCTAGTCTAGTAAAG 57.215 33.333 8.68 1.49 30.15 1.85
3662 4153 9.784680 CTTTGATTAACGAGCTAGTCTAGTAAA 57.215 33.333 8.68 0.11 30.15 2.01
3663 4154 9.170734 TCTTTGATTAACGAGCTAGTCTAGTAA 57.829 33.333 8.68 0.00 30.15 2.24
3664 4155 8.728337 TCTTTGATTAACGAGCTAGTCTAGTA 57.272 34.615 8.68 0.00 30.15 1.82
3665 4156 7.627298 TCTTTGATTAACGAGCTAGTCTAGT 57.373 36.000 8.68 0.00 31.68 2.57
3666 4157 7.593273 CCATCTTTGATTAACGAGCTAGTCTAG 59.407 40.741 0.00 2.18 0.00 2.43
3667 4158 7.068348 ACCATCTTTGATTAACGAGCTAGTCTA 59.932 37.037 0.00 0.00 0.00 2.59
3668 4159 6.127310 ACCATCTTTGATTAACGAGCTAGTCT 60.127 38.462 0.00 0.00 0.00 3.24
3669 4160 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
3670 4161 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
3671 4162 8.420374 TTTACCATCTTTGATTAACGAGCTAG 57.580 34.615 0.00 0.00 0.00 3.42
3672 4163 8.038944 ACTTTACCATCTTTGATTAACGAGCTA 58.961 33.333 0.00 0.00 0.00 3.32
3673 4164 6.879458 ACTTTACCATCTTTGATTAACGAGCT 59.121 34.615 0.00 0.00 0.00 4.09
3674 4165 7.073342 ACTTTACCATCTTTGATTAACGAGC 57.927 36.000 0.00 0.00 0.00 5.03
3675 4166 9.543018 GAAACTTTACCATCTTTGATTAACGAG 57.457 33.333 0.00 0.00 0.00 4.18
3676 4167 8.508875 GGAAACTTTACCATCTTTGATTAACGA 58.491 33.333 0.00 0.00 0.00 3.85
3677 4168 8.512138 AGGAAACTTTACCATCTTTGATTAACG 58.488 33.333 0.00 0.00 37.44 3.18
3681 4172 8.803235 GGTTAGGAAACTTTACCATCTTTGATT 58.197 33.333 0.00 0.00 41.26 2.57
3682 4173 7.947890 TGGTTAGGAAACTTTACCATCTTTGAT 59.052 33.333 0.00 0.00 44.32 2.57
3683 4174 7.291566 TGGTTAGGAAACTTTACCATCTTTGA 58.708 34.615 0.00 0.00 44.32 2.69
3684 4175 7.519032 TGGTTAGGAAACTTTACCATCTTTG 57.481 36.000 0.00 0.00 44.32 2.77
3691 4182 7.827729 ACATGTCTATGGTTAGGAAACTTTACC 59.172 37.037 0.00 0.00 41.70 2.85
3692 4183 8.665685 CACATGTCTATGGTTAGGAAACTTTAC 58.334 37.037 0.00 0.00 39.25 2.01
3693 4184 8.598916 TCACATGTCTATGGTTAGGAAACTTTA 58.401 33.333 0.00 0.00 39.25 1.85
3694 4185 7.458397 TCACATGTCTATGGTTAGGAAACTTT 58.542 34.615 0.00 0.00 39.25 2.66
3695 4186 7.016153 TCACATGTCTATGGTTAGGAAACTT 57.984 36.000 0.00 0.00 39.25 2.66
3696 4187 6.620877 TCACATGTCTATGGTTAGGAAACT 57.379 37.500 0.00 0.00 40.79 2.66
3697 4188 7.865706 ATTCACATGTCTATGGTTAGGAAAC 57.134 36.000 0.00 0.00 38.66 2.78
3698 4189 7.888021 ACAATTCACATGTCTATGGTTAGGAAA 59.112 33.333 0.00 0.00 38.66 3.13
3699 4190 7.402054 ACAATTCACATGTCTATGGTTAGGAA 58.598 34.615 0.00 0.00 38.66 3.36
3700 4191 6.957631 ACAATTCACATGTCTATGGTTAGGA 58.042 36.000 0.00 0.00 38.66 2.94
3701 4192 6.823182 TGACAATTCACATGTCTATGGTTAGG 59.177 38.462 0.00 0.00 45.81 2.69
3702 4193 7.848223 TGACAATTCACATGTCTATGGTTAG 57.152 36.000 0.00 0.00 45.81 2.34
3703 4194 8.806429 AATGACAATTCACATGTCTATGGTTA 57.194 30.769 0.00 0.00 45.81 2.85
3704 4195 7.707624 AATGACAATTCACATGTCTATGGTT 57.292 32.000 0.00 0.00 45.81 3.67
3705 4196 7.394077 TCAAATGACAATTCACATGTCTATGGT 59.606 33.333 0.00 0.00 45.81 3.55
3706 4197 7.764331 TCAAATGACAATTCACATGTCTATGG 58.236 34.615 0.00 0.00 45.81 2.74
3707 4198 9.233232 CATCAAATGACAATTCACATGTCTATG 57.767 33.333 0.00 0.00 45.81 2.23
3708 4199 9.181061 TCATCAAATGACAATTCACATGTCTAT 57.819 29.630 0.00 0.00 45.81 1.98
3709 4200 8.564509 TCATCAAATGACAATTCACATGTCTA 57.435 30.769 0.00 0.00 45.81 2.59
3710 4201 7.457024 TCATCAAATGACAATTCACATGTCT 57.543 32.000 0.00 0.00 45.81 3.41
3711 4202 7.201291 CGTTCATCAAATGACAATTCACATGTC 60.201 37.037 0.00 0.00 45.82 3.06
3712 4203 6.583427 CGTTCATCAAATGACAATTCACATGT 59.417 34.615 0.00 0.00 39.39 3.21
3713 4204 6.802834 TCGTTCATCAAATGACAATTCACATG 59.197 34.615 0.00 0.00 39.39 3.21
3714 4205 6.912082 TCGTTCATCAAATGACAATTCACAT 58.088 32.000 0.00 0.00 39.39 3.21
3715 4206 6.204495 TCTCGTTCATCAAATGACAATTCACA 59.796 34.615 0.00 0.00 39.39 3.58
3716 4207 6.602179 TCTCGTTCATCAAATGACAATTCAC 58.398 36.000 0.00 0.00 39.39 3.18
3717 4208 6.799926 TCTCGTTCATCAAATGACAATTCA 57.200 33.333 0.00 0.00 39.39 2.57
3718 4209 7.427606 GTGATCTCGTTCATCAAATGACAATTC 59.572 37.037 0.00 0.00 39.39 2.17
3719 4210 7.094677 TGTGATCTCGTTCATCAAATGACAATT 60.095 33.333 0.00 0.00 39.39 2.32
3720 4211 6.372381 TGTGATCTCGTTCATCAAATGACAAT 59.628 34.615 0.00 0.00 39.39 2.71
3721 4212 5.700373 TGTGATCTCGTTCATCAAATGACAA 59.300 36.000 0.00 0.00 39.39 3.18
3722 4213 5.237048 TGTGATCTCGTTCATCAAATGACA 58.763 37.500 0.00 0.00 39.39 3.58
3723 4214 5.784750 TGTGATCTCGTTCATCAAATGAC 57.215 39.130 0.00 0.00 39.39 3.06
3724 4215 6.108015 TGATGTGATCTCGTTCATCAAATGA 58.892 36.000 0.00 0.00 42.01 2.57
3725 4216 6.354039 TGATGTGATCTCGTTCATCAAATG 57.646 37.500 0.00 0.00 42.01 2.32
3726 4217 7.563888 AATGATGTGATCTCGTTCATCAAAT 57.436 32.000 10.02 4.59 45.83 2.32
3727 4218 6.990341 AATGATGTGATCTCGTTCATCAAA 57.010 33.333 10.02 0.85 45.83 2.69
3728 4219 6.703165 CCTAATGATGTGATCTCGTTCATCAA 59.297 38.462 10.02 7.86 45.83 2.57
3729 4220 6.040842 TCCTAATGATGTGATCTCGTTCATCA 59.959 38.462 8.70 8.70 46.43 3.07
3730 4221 6.450545 TCCTAATGATGTGATCTCGTTCATC 58.549 40.000 11.28 9.42 37.68 2.92
3731 4222 6.266330 TCTCCTAATGATGTGATCTCGTTCAT 59.734 38.462 7.03 7.03 0.00 2.57
3732 4223 5.594317 TCTCCTAATGATGTGATCTCGTTCA 59.406 40.000 0.00 0.00 0.00 3.18
3733 4224 6.078202 TCTCCTAATGATGTGATCTCGTTC 57.922 41.667 0.00 0.00 0.00 3.95
3734 4225 6.471233 TTCTCCTAATGATGTGATCTCGTT 57.529 37.500 0.00 0.00 0.00 3.85
3735 4226 6.662865 ATTCTCCTAATGATGTGATCTCGT 57.337 37.500 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.