>input_sequence_43968
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----------------------------------------------------ATGGGGAGGAAGCTAGGGCTGGACAGGG
TGATGGACTGCTTCTCGCTCTCCGTGTGCGCCAACGCTTGCGTCTGCGTGCACGCGGTGGAGGACGAGGACGAGGAGAAC
GAGGGGAAGGCCCTGGTGAGCGCTCAGCTGGACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTTGC
TTTCCATCTAGAGCCAAAGGTAAACAAGAATTAACA----CCCGTTCTATCTCTCTATCTAAGATGCCTCTGCGCAATAT
G--------ACTGCTAATATTCACTATG-------------------------GATGCAGACGGTGGAGCTGAGGGTGTC
TATGCACTGCTACGGATGCGCCAGGAAAGTTCAGAAGCACATCTCCAAGATGGAAGGTACCATGCGAATGAGAACTGAAC
CTTTAAATCCCTTTTTCTGGGCAGTGTTGAGATTCTTTTGATAGGGCATAGC----GCTAAAAGCATACAATCATGCTGG
GGTACTTGTTATCATAAAGTTCCTATCATTTCACTCCAAACAAAAAAGGAATTGCAGAG-TTATACAACTGATCTGGCCG
TAAGCTTTGCTAATTAGTATTCGCTAAGGGACAATTTGACAGCTTGTTTT-------TCCCTTGATTATCTCACTGCAAT
TGCTTTCGAACCTGCACAAAACACAGCAGATTTCTGCCTCGTATCTTACTCTAATTTTCTCTTCCCTTTCAACGCCACCT
CG--ATCTGTTGATAATTCAGACACAGCCAAGTGTGCATTTCTTA---CTGCTAGTATCATTTGATAAAAAAAAT-AGAG
CGTCCATTTCTTATTAGTGGGGCGGAGCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGG
ATCTGTAGACCGGATAATAATTTTTCAAAGTAGAGTGGCGTGGT----AGCCACCACATGGGCGGGCGTCAGGGTCACGG
GGATAGGAGCGCAACGTCTCAGAAGTCCAGAAGCATTTGGAGCAGAGATAAGTCGCGGCCTGTCAGACGCGGGAAGGAAG
A-----ATGCCCTGCGGCAGGTTGACCTCTGTGCGCC-------------------------------------------
AAAACCACAAATT--------------------T-----CGTTGGTGGGCTAACGGCAAGCAGTGAACACAGCCACGCAG
CCATGAGCTCCGGAAAGCTTTTAGGTTAGTACACTAGTGCTACTGTTGTGGCATGTTACGGAATAAAACACAGGTCACCG
ACTCACCGCAGCCGGTG-----GCGGGTGGGCGTCGATCCA------TTCGGGCCTGTGCGCCTGAGTCGGCTCCGGTGT
CGTTTTGGCCGCGCGGGCAGGCGACCACGCGCCGATGCAT---GCATGGATCGGGTTTCCTCCGTTCGCGATACCGCTGC
CGCTGCGTGCA------------TGCATGCTTGGGCACATCTGCACATGTTGGTACCCTGCGCATGTGCAGGGCTGCCTG
CCTTTTCTGGAAAAACTTTTGGTGGCACCGCCAGTCGGTGGCCAAGATTTGGTACTA-----------------------
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---------------------------------------CTGCTGCAGCGCTCATAATTGACCTGCCACCACCTTCGCCG
TACGGCTCATTGTCGGAGCATCCGCATCGATAGATAT-----TATCAGTTCGGTTAAACTATGTTGATTTACGAGCCGAG
TCCCGGACG-----GCGATCATCTCTGACATTTGGTTATTTTCCT-GTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATT
TGGAGAAGAAGAAGGTGGTCGTGACGGGGGACGTGACGCCCTACGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTT
GCGGAGCTGTTGGTGGCCCCCAACTCCCCGACTCCGAGTAGATAG-----------------------------------
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>chr3B_1_TraesCS3B01G322900
GGCAGTTGCCCAAAAAAATAAAAGGTCGTCGTCATTTTGCAAAGTCGTGGT------CTGCAAGGAAGAGATGCACTGTG
GCATGCGTCAATGAAGGTGACCAGAGCCTATTCTATACGTACCCTTAAGCGCCCTTGTTTAAAATTGTGATGTCCTCTCG
TGTCTCTTCGGCGCAAGGGTAAGGCGGATATGGTTTTATATGGTAATAATCGTCGCCGTCTTGCTTGTGTATGTACG---
-TATGCTCACGTTGCAGCGCATATATT--TTC--CCCACCGAACGGAAAGCTACAAACATACACTACACAC---------
--TGATCGCCGATGCGCACAAGTGAAAGACACGTATGTGGCAACCTGTGAACATTGACGTGTCTAACCTAACTTTTTCCT
TGTTTTCAGTTACTTGTATATGTATTATTTCCTTCCGAAAAGGAGGGCTTTCGGTTACTTGTGTAAAGG-----------
CCAGCCTCTCATTTGCAGGA----TGATTGGGTTCTATATATTCTATGGTTATGCTTTCAGCTCAAGGCGTAGTGT-TGT
ATGTACG----CATGGGCATCGCGATGTGCCTGTGTTCCAAAATGCATAATTCCACAAGTGGTAGCGCCAATAAGCAAGC
ACATTGTCACATGGAGGGCTTGCCAGCTTGTCTGTCTGTCCAGCCCCCTTGTCAAACCGGCTCATGACTCTGTCTTGCAC
CAAAACAAAAGCTATAATAATTGTA---TTCAACATCGGGAGCTGCTTCGGACTTTTGAGC-----TATAGCCCACTTCT
---ATACTGCCCGGCGCTGCTGCTTATATGCATATATATTCTCAT-CCCTTGCCTCATTCCAAGCGCTTGGCTTTGCTTT
GGTAGGTCTGCTCGCTCAGCGCGCGTACCAGCTTGTCTCTTCTTCCTCGTCGCCTTAAAAGGGTCTCTGCGCTTAGCAGT
GCGCTTTTCACTTCAC----AGCTTCACTTCTCAGAGACTTCAGAGAGG-------------------------------
GAGAGAGAGAGAAACCGTGGTGAGTGAGATAGAGATAGAGAGAGAGGAGAGGATGGGGAGGAAGCTAGGGCTGGACAGGG
TGATGGACTGCTTCTCGCTCTCCGTGTGCGCCAACGCTTGCGTCTGCGTGCACGCGGTGGAGGACGAGGACGAGGAGAAC
GAGGGGAAGGCCCTGGTGAGCGCTCAGCTGGACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTTGC
TTTCCATCTAGAGCCAAAGGTAAACAAGAATTAACA----CCCGTTCTATCTCTCTATCTAAGATGCCTCTGCGCAATAT
G--------ACTGCTAATATTCACTATG-------------------------GATGCAGACGGTGGAGCTGAGGGTGTC
TATGCACTGCTACGGATGCGCCAGGAAAGTTCAGAAGCACATCTCCAAGATGGAAGGTACCATGCGAATGAGAACTGAAC
CTTTAAATCCCTTTTTCTGGGCAGTGTTGAGATTCTTTTGATAGGGCATAGC----GCTAAAAGCATACAATCATGCTGG
GGTACTTGTTATCATAAAGTTCCTATCATTTCACTCCAAACAAAAAAGGAATTGCAGAG-TTATACAACTGATCTGGCCG
TAAGCTTTGCTAATTAGTATTCGCTAAGGGACAATTTGACAGCTTGTTTT-------TCCCTTGATTATCTCACTGCAAT
TGCTTTCGAACCTGCACAAAACACAGCAGATTTCTGCCTCGTATCTTACTCTAATTTTCTCTTCCCTTTCAACGCCACCT
CG--ATCTGTTGATAATTCAGACACAGCCAAGTGTGCATTTCTTA---CTGCTAGTATCATTTGATAAAAAAAAT-AGAG
CGTCCATTTCTTATTAGTGGGGCGGAGCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGG
ATCTGTAGACCGGATAATAATTTTTCAAAGTAGAGTGGCGTGGT----AGCCACCACATGGGCGGGCGTCAGGGTCACGG
GGATAGGAGCGCAACGTCTCAGAAGTCCAGAAGCATTTGGAGCAGAGATAAGTCGCGGCCTGTCAGACGCGGGAAGGAAG
A-----ATGCCCTGCGGCAGGTTGACCTCTGTGCGCC-------------------------------------------
AAAACCACAAATT--------------------T-----CGTTGGTGGGCTAACGGCAAGCAGTGAACACAGCCACGCAG
CCATGAGCTCCGGAAAGCTTTTAGGTTAGTACACTAGTGCTACTGTTGTGGCATGTTACGGAATAAAACACAGGTCACCG
ACTCACCGCAGCCGGTG-----GCGGGTGGGCGTCGATCCA------TTCGGGCCTGTGCGCCTGAGTCGGCTCCGGTGT
CGTTTTGGCCGCGCGGGCAGGCGACCACGCGCCGATGCAT---GCATGGATCGGGTTTCCTCCGTTCGCGATACCGCTGC
CGCTGCGTGCA------------TGCATGCTTGGGCACATCTGCACATGTTGGTACCCTGCGCATGTGCAGGGCTGCCTG
CCTTTTCTGGAAAAACTTTTGGTGGCACCGCCAGTCGGTGGCCAAGATTTGGTACTA-----------------------
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---------------------------------------CTGCTGCAGCGCTCATAATTGACCTGCCACCACCTTCGCCG
TACGGCTCATTGTCGGAGCATCCGCATCGATAGATAT-----TATCAGTTCGGTTAAACTATGTTGATTTACGAGCCGAG
TCCCGGACG-----GCGATCATCTCTGACATTTGGTTATTTTCCT-GTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATT
TGGAGAAGAAGAAGGTGGTCGTGACGGGGGACGTGACGCCCTACGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTT
GCGGAGCTGTTGGTGGCCCCCAACTCCCCGACTCCGAGTAGATAGACGATGATGATGATGACAAGCTGATAGGGTGGGTG
TGACACATTTCACT--TGATAAAATCAAATATATTTGCCATGATTCTCACGCAAGGCACGCGTACGTAGCAGCACACACA
ACCATGGCAAGGAAGAAACTATTGAAAGTTTGTAACTAGGGGGCCAAGGAAGAAGAGCGTGC-TTGGGTCTAATTGGTTG
ATCTATCTACTCAAAAGGAAAAA---AAACAGCCCGTCCATACATGCAGCATGCTTTAGGGCGCGTTTGGTTACCTGCAT
CGTTTTTTGCCACTTTGCATACTTGTCCCAGTTGGACCTGACAGAGCATATGCAGAGAAAAAACCAACATCTGCATGTTG
ATTGGTTGCCTGCATGCCTTCTCCTTGCATCCTAACGATGCCTCTACGCACCGTGTTTGGTTGCTCGCATTGTATGTGGT
CAGATAAATGCATGTTGTTTGGTTGCTTGCATGGAATATGATTAAGACTTAACAGCTACCCATAACACACATTGTTACAC
TAGAGTACCTCGACTGCATCGGTGGGCGGTGGTTGCGGCGCCGCGTCCGACACGACGAGCACAGAGTCGCCGACGAGCAA
TCTCATCGGCGACACGGTGAGCTATTTGCTAGCGCCCTCGCTGCAGAGCAAGTCCGTGTGGATTAACGAATAGGAAGGCA
TTGGGGCATAGGACGATGGTGG-AAAATGCAGCGTGCTAGCCATGGCATCCTCAGTGTAGTAGAACGTGGAGGAGTAGGT
GAAAGAAATATGCCCTAGAGGTAATAATAAAGTTGTTATTTTATATTTGCTTATTTCATGACAAATGTTTATTATTCATG
CTAGAATTGTATTAACCGGAAACTTGATACATGTGTGGATACATAGACAAAACATCGTGTCCCTAGTAAGCCTTTACTAG
ACTAGCTCGTTAATCAAAGATGGTAAAGTTTCCTAACCATAGACATGTGAATTGTCATTTGATGAACGAGATCACATCAT
TAGGAGAATAAT
>chr3D_1
GGCAATTGGCCAAACAATTAAAAGGCCGTCGTCATTTTGCAAAGTCGTGGTCTGCAACTGCAAGGAAGAGATGCACTGTG
GCATGCGTCAATGAAGGTGACCAGAGCCTATTCTAT----GTCCTTGAGCGCCCTTGTTTAAAAATCTGTTGTCCCCTCG
TGTCTCTTCGGCGCAAGGGCAAGGCGGATATGGTTTTATATGGTAATAATCGTCGCCGTCTTGCTTGTGTGTGTACG---
-TATGCTCACGTTGCAGCGCATATATATATTC--CCCACCGAAGGGAAAGCTACAAACACACACTATACAC---------
--TGATGGCCGATGTGCGCAAGTGAAAGACACGTATGTGTCAGCCTGTGAACCTTGACGTGTCTAACCTAAC-TTTTCCT
TGTTTTCAGTTACTTGTATAGTGTTTCTTTTCTTTCAAAAAGCAGTGTTTTCAGTTATTTGTATGT-----AAAGGCCAT
CCAGCCTCTCATTTGCACGACGCATGATTGGGTCCCTTCTATTCTATGGTTATGCTTTCAGCTCAATTTGTAGTGTATGC
ATGTACG----CATGGGCATCGCGATGTGCGTGTATTCTCAAACGCATGATTCCACGAGTGGTAGCGCCAATAAGCAAGC
ACATTGTCACATGGAGCGCTTGCCAGCTTGTCTGTCTGTCCAGCCCCCTTGTCAAACCGGCTCATGACTCTGTCTTGCAC
CAAAACAAAAGCTATGATTGTATTCAATTTCAACATCGGGAGTTGCTTCAGACTTTTGAGCTAACATATAGCCCACTTTT
---ATACTGCCCGGCGCTGCTGCTTATATGCATATATATTCTCAT-CCCTTGCCTCATTCCAAGC-----GCTTTGCTTT
GGTAGGTCTGCTCGCTCAGCGCGCGTACCAGCTTGTCTCTTCTTCCTCGTCGCCTTAAAAGGGCCTCTGCGCTTTGCAGT
GCGCTTTTCACTTCAGACTGAGCTTCACCTCTCAGAGACTTCGGAGAGATA-------GAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAAGCCGTGGTGAGTGAGATAGAG--------AGAGGAGAGGATGGGGAGGAAGCTAGGGCTGGAGAGGG
TGCTGGACTGCTTCTCGCTCTCGGTGTGCGCCAACGCTTGCGTCTGCGTGCACGCGGTGGAGGACGAGAACGAGGAGAGC
GAGGGGAAGGCCCTGGTGAGCGCTCAGCTGGACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTCGC
TTTCCATCTGGAGCCAAAGGTGAG---GAATTAACTAACGC---------CTCCCTCTCTAAGATGCCTCTGCAGAACAT
GCTGTGGACACTGCTAGTATTCACCTGCACTGCATAATAACATGCCTCCTGCTGATGCAGACGGTGGAGCTGAGGGTGTC
CATGCACTGCTACGGGTGCGCCAGGAAAGTTCAGAAGCACATCTCCAAGATGGAAGGTACCATACGAATGAGAATTGAAC
CTTTAAATCCCTTTTTCGGGGCAGTGTTGACATTCTTTTGATAGGGCATAGCTAGTGATAAAAGCATACAATCATGCTGG
GGTACTTGTTATCGTAAAGTTCCTATCATTTGACTCCAAACAAAAAAGGAATTGCAAAGTTTGTACAGCTGATCTGGCCG
TAATCTTTGCTAATTATTCGCCAG--AGGGACAACTTGACAGCTTGTTTT-------TTCCTTGATTATCTCACTGCAAT
TGCTTTCGAACCTGCACAACACACAGCAGATCTCTGCCTCGTGTCTTACTCTAATTTTCTCTTCCCTTTCAACGCCACCT
CG--ATGTGTTGATACTTCAGACATAGCCAAGTGTGCGTTTCTTA---CTGCTAGTGTTTA-----AAAACAAAT-ATAG
TGTCCATTTCTTATTGGTGGGGCGGAGCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGG
ATCTGTAGACCGGATAAT---TTTTCAAAGTAGAGTAGCGCCGT----AGC--CCACATGGGCGGGCGTCACGGGA----
--ATAGGAGCGCAACGTCTCAGAAGTCCAGAAGCATTTGGAGCAGAGATAAGTCGCGATCTGTCAGACGCGGGAAGGAAA
A-----ACACCCTGCGGCAGGTTGACCTCTGTGCGCCTCCAGTCG----TTTCAAATTTTCAATATACAACAAGCGAAGC
AAAACCCCAAATTTCTGCTCTGCTCTGCTCCCCT-----CGCTGCTGGGCTAATGGCGAACAGTGAACAAAGCCTCGCTG
CA---------------------------------------------GTGGCATGTTACGGAATGTAGTCATACACG---
--TCACCGAAGCCGGTG-----GCGGGTGGGCGTCGATCC--------------CTGTGCGCCTGAGTTGGCTCCGGTGT
CGTTTTGGCCGCGCGGGCGGGCGACCACGCGCCGATGCAT---GCATGGATCGGGTTCCTTCCGTTCGCGCTGC------
--CGCTGCGGTACTGCATGATACTGCATGCTTGGGCGCATCCGCACATGTTGCTACTCTGCGCATGTGCAGGGCTGCCTG
CCTTTTCTGGAAAAACTTTTGGTGGCACCGCCAGTCGGTGGCCAAGATTTGGTACTACTG--------------------
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---------------------------------------CTGCTGCGGCGCTCATAATTGAGCTCCCACCAACTTCACCG
TATGGCTCGTTGTCGGAGCATCTGCGTCGATAGATAT-----TATCAGTTCAGTTAAAATATGTTGATTTACGAGTCGAG
TGAGTCCTGGACGAGCGATCATCTTTAACATTTTGTTTCTGTTCTTGTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATT
TGGAGAACAAGAAGGTGGTCGTGACGGGGGACGTGACGCCCTACGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTT
GCGGAGCTGTTGGTGGCCCCCAAGTCCCCGGCTCCGAGTAGATAGT------TGATGATGATAAGCTGATAGGGTGGGTG
TGACACATTTCACTC---ATAAAATCAAATATATGTGCTGTGATTCTCACGCAAGGCACGCATACGTAGCAGCACACGCA
ACCATGGCAAGGAAGAAACTATGGGAAGATTGTAACTAGGAGACCAAGGAAGAAGAGGGTGG-TTGGGTCTAATTGGTTG
ATCTATCTACTCAAAAGAAAAAAGAAAAATAGCCCGTCCATACGTGCAGCATGCTTTAG---------------------
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>chr3A_44
-------------------------------------------GTCGTGGT------CTGCAAGGAAGAGATGCACTGTG
GCATGCGTCAACGAAGGCGACCAGAGCCTATTCTAT----ACCCTTGAGCGCCCTTGTTTAAAAATGTG----------G
TGTCTCTTGGGCGCAAGGGCAAGGCGGATATGGTTTTATATGGTAATAATCGTCGCGGTCTTGCTTGTGCATGTACGTAT
ATATGCTCACGTTGCAGCGCATATATATTCCCCACCCACCGAAGGGAAAGCTACAAACATACACTATACACACTATACAC
ACTGATCGCCGATGTGCACAAGTGAAAGACACGTATGTGTCAGCCTGTGAACCCTGACGTGTTTATCCTAAC-TTTTCCC
TGTTTTCAGTTGCTTGTACATGCTTTTTGATCTTCCGAAAAGGAGGGCTTTCGGTTACCTGTGTGTACGTGAAAGGCCAT
CCAGCCTCTCATTGGCACGATGCATGATTGGCT-CCTTCTATTCTATGGTTATGCTTTCAGCTCAGTTTGTAGTGTATGT
ACGTACGCATACATGGGCATCGCGATGTGCGTGTGTTCCAAAACGCATGATTCCACGAGTGGTAGCGCCAATAAGCAAGC
ACATTGTCACATGGAGGGCTGGCCAGCTTGTCTGT---------CCCCTTGTCAAACCGGCTCATGACTCTGTCTTGCAC
CGAAACAAAAGCTATGATTGTATTCAATTTCAACATCGGGAGCTGCTTCAGACTTTTGAGCTAACATATAGCCCACTTTT
TTTATACTGCCCGACGCTGCTGCTTATATGCATATATATTCTCATCCCTTTGCCTCATTCCAAGCGCTTGGCTTTGCTTT
GGTAGGTCTGCTCGCTCA---------CCAGCTTGTCTCTTCTTCCTCGTCGCCTTAAAAGGGCCTCTGCGCTTTGCAGT
GCGCTTTTCACTTCAGA----GCCTCACTTCTCAGAGACTTCGGAGAGAAGCCGTGGTGAGATAGAGATAGAGATAGAGA
TAGAGA-----------------------TAGAG--------GGAGGAGAGGATGGGGAGGAAGCTAGGGCTGGAGAGGG
TGCTGGACTGCTTCTCGCTCTCGGTGTGCGCCAACGCCTGCGTCTGCGTGCACGCGGTGGAGGGCGAGGACGAGGAGAAC
GAGGGGAAGGCCCTGGTGAGCGCGCAGCTGGACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTTGC
CTTCCATCTGGAGCCAAAGGTAAACAAGAATTAACTAACGCCCGTTCTATCTCTCTATCTAAGACGCCTCTGCACAACAT
GCTGTGGACACTGCTAATATTCACTATG-------------------------GATGCAGACAGTGGAGCTGAGGGTGTC
CATGCACTGCTACGGATGCGCCAGGAAAGTTCAGAAGCACATCTCCAAGATGGAAGGTACGAGGCGAATAGTAACTGAAC
CTTTAAATCCCCTTTTCGGGGCAGTGTTGAGATTCTTTTGATAGGGCCTAGCTAGCGCTAAAAGCATACAATCATGCTGG
GGTACTTGTTATCGTAAAGTTCCTATCATTTGACTCCAAACAAAAAAGGAATTGCAGAG-TTATACAACTGATCTGTCCG
TAAGCTTTGCTAATTATTCGCCAG--AGGGACAACTTGACAGCTTGTTTTTTTTTCCTTCCTTGATTATCTCACTGCAAT
TGCTTTCGAACCTGCACAACACACAGCAGATCTCTGCCTCGTGTCTTACTCTAAGTTTATCTTCCCTTTCAACACCACCT
GTCAATGTGTTGATAATTCGGACATAGCCAAGTGTGCATTTCTTACTGCTGCTAGTATCATTTGATAAAAAAAAGCAGAG
CGTCCATTTCTTATTAGTGGGGCGGGGCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGG
ATCTGTAGACCGGATAAT---TTTTCAAAGTAGAGTAGCGCCGTAGCCAGCCACCACATGGGCGGGCG------------
------GAGCGCAACGTCTCAGAAGCCCAGAAGCATTTGCAGCAGAGATAAGTCGCGGCCTGTCAGACGCAGGAAGAGAA
AAATGTATGCCCTGCGGCAGGTTGACCTCTGTGCGCCTCCAGTCATTCATTTCAAAATTTCAATACA--ACAAGTGAAAG
AAAACCCCAAATTTCTACTCTGCTCTGCTCTGCCGCACGCGTTGCCGGGCTAATGGCGAACAGTGAACGCAGCCACGCGG
CCATGAGCTCCGGAAAGCTTTTAGGTTAGTAGTACGCCAGTACTGTTGTGGCATGTTACGGAATAAAACACAGGTCACCG
ACTCGCCGCAGCCGGTGGACTCGCGGGTGGGCGTCGATCCACCTCCGTTCGGCCCTGTGCGCCTGAGTTGGCTCCGGTGT
CGTTTCGGCCGCGC----------------GCCGATGCATGCAGCATGGATCGGGCTCCTTCCGTTCGCGCGGCCGCTGC
GGCGCTGCGGTACTGCATGATACTGCATGCTTGGGCGCATCTGCACATGTTGCTACTCTGCGCATGTGCAGGGCTGCCTG
CCTTTTCTGGAAAAACTTTTGGTGGCACCGCCAGTCGGTGCCTAAGATTTGGTACTACCTCCGTCCCGGTGTATAAGTCA
TTTGCGTAGTTTTAGGTCGACAATTTAACTATCTAAATATGTATTATATGTGACAAAAAAAATATATTTAGAAACTACAT
TTGTGTAAAAATCTAGTGATATACTTTTCATGACATATAACACATATTTAATTCCTTAAATCGACGGCCTAGACTACGCG
AATGACTTATACACCGAGACGGAAGTAGTACTACTGCTACTGCTGCCGCGCTCATAATTGAGCTGCCACCACCTTCACCG
TACGGCTCACTGTCGGAGCATCTGCGTCGATAGATATTATCATATCAGTTCAGTGAAAATATGTTGATTTACGAGTCA--
-GAGTACTGGACGAGCGATCAT-TTTAACATTTTGCTTCTGTTCTTGTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATT
TGGAGAACAAGAAGGTGGTGGTGACGGGGGACGTGACGCCCTATGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTT
GCGGAGCTGTTGGTGGCCCCCAAGTCCTCGGCTCCGAGTAGATAGACG---ATGATGATGATAAGCTGATAGGGTGGGTG
TGACACATTTCACTGATGATAAAACCAAATATATATGCCATGATTGTCACGCACGGCACGCGTACGTGGCAGCACACGCA
AGCATGGCAAGGAAGAAACTATTGGAAGATTGTAACTAGGAGATCAAAGAAAAAGAGGATGGTTTGGGTCTAATTGATTG
ATCTA----CTCAAAAGAAAAAAGAAAAACAGCCCATCCATACATGCATCATGCTTT-----------------------
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>chr6B_2996
TGCACATCT-----------------------------------------------------------------------
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------------------------------------------------------TTTTGGGCACATTTGGTTACCTGCAT
CGTTTTTTGCCCCTTTGCATACTTGTCCCAAGTGGATCTGGTTGAGCATATGCAGGCAAAAAATTAACATCTGCATGTTG
ATTGATTGCCAGCATGTCCTCTCCCTGCATCGTAACAATGCCTCTACACACAGTGTTTGGTTGCTCGCATTGTGCGTGGT
CAGGTGAGTACGTCTTGTTTGGTTGCTTGCACAAAATATGATTAAGACTTAACAGCTACCCATAACACACAATGTTACAC
TAGAGTGCCTCTGCGACAGCAGTGGGCGATGATCATGGCGCCGCGTCCGACACGACGAGCATGGAGTCGCAGGCGAGCGA
TCTCATCAGCGGCACAGTGAGCTATTTGCTAGCGTCGTCGCCGTAAAGAAAGTCC-TGTGGAGTAACGATTAGGAAGGTG
TTGAGGCAGAGGATGATGGTGAAAAAATGCAGTGTGCCTGCCATGGCGTCGTCAGTGTAGTAGGGCGAGAAGGAGGAGG-
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>chr5D_2999
AGCATGAC------------------------------------------------------------------------
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-------------------------------------------------------TTTGGCCGTGTTTGGTTACCTACAT
TGTTTTTTGCCCTTTTGCATACTTGTCTCAGTTGGGCCTGGCTGAGCAAATGCAGGCAAAAAACCAACATCTGCACTTAG
TTTGGTTGCCTGCATGTCCTCTCTCTGCATCGTAATGATGCCTCTATGCACCGCGTTTGGTTGCTCGTATTGTATGTGGT
CAGATGAGTGCACGTTGTTTGGTTGCTTGCACGGAATAGGATTAAGACTTAATAGCTACCCATAACACACATTGTTACAC
TAGAGTGCCTCGGCGACAACGGTAGGCGGTGGTTGCGGCGGCGCGTCCAACATGACGAGCATGGAGTCGCGGGCGAGCGA
CCTCATCGGCGGCGCAGTGAACTATTTGCTAGCGCCATCGCCGCAGAGAAAGTCTATGTGGAGTAATGAATAGAAGGGCG
TTGAGGCAGAGGATGATGAAGAAAAAATGCAGTGTGCCCG-CATGGCGGCTTTAGTGTAGTAGGACGGGGAGGAGGAGG-
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>chr7D_3005
CTTTGC--------------------------------------------------------------------------
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------------------------------------------------------------GCGCGTTTGGTTACCTGCAC
CGTTTTTTGCCCTTTTGCATACTTGTCCCAGTTGGGCCTGGCTGAGTAAATGCAGGCCAAAAACCAACATCTGCACTTAG
TTTAGTTGCCTGCATGTCCTCTCCCTGCATCGTAACGAAGCCTCTACGTATCGCGTTTGGTTGCTCGCATTGTATGTGGT
CAGATGAGTGCACGTTGTTTGGTTGCTTGCA-GGAATATGATTAAGACTTAATAGCTACCCATAACACACAGTGTTACAC
TAAAGTGCTTCGGCGACAACGGTAGGCGGTGGTTGCAGCGCCGCGTCCGACACGACGAGCATGGAGTCGCGGTCGAGCCA
CCTCATCGGCGGTGCAGTAAACTATTTGCTAGTGCCACCGCCGCAGAGAAAGTCCGTGTGGAGTAACGAATAGAAGGGCG
TTGAGGCAGAGGATGATGAAGAAAAAATGCAGTGTGCCCTTCATGGTGACGTCAGTGTAGTAGGACGGGGAGGAGGAGG-
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>chr5D_3006
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------------------------------------------------------TTTGGGGCGCGTTTGGTTATTTGCAT
CGTTTTTTGCCCTTTTGCATACTTTTCAAAGTTGG-CCTGACTGAGCATATGCAGGCAAAAAACCAACATCTGCATGTTG
ATTGGTTGCCAGCATGCCCTCTCCCTGCATCGTAACGATGCCTCTACGCACCGCGTTTGGTTGTTCGTATTGTATGTGGT
CAGATGAGTGCATGTTGTTTGGTTGCTTGCAGGGAATATGATTAAGACTTAATAGCTACCCATAACACACAGTGTTACAC
TACAGTGCCTCGGCGACAATGGTAGGCGGTGGTTGCGGCGCCGCGTCCGACACGACGAGCATGGAGTCGCGGGCGAGCGA
CCTCATCGGCAGTGCAATGAACTATTTGCTAGTGCCATCGCCGCACAGAAAGCCCGTGTGGAGTAACGAACAAAAGGGCG
TTGAGGCAGAGGATGATGAGGGAAAAATGCAGTGCACCTGCCATGGCGTCGTCAGTGTATTAGGACGGGGAGGAGGAGG-
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>chr5D_3006
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------------------------------------------------------TTTCGGGCGCGTTTGGTTACCTGCAT
CGTTTTTTGCCCTTTTGCATACCTGTCCCAGTTGGGGCTGGTTGAGCATATGCAGGAAAAAAACCAACATCTGCATGTTG
ATTGGTTGCCAGCATGTCCTCTCCTTGCATCGTAACGATGCCTCTACGCACCTCGTTTTGTTGTTCGCATTGTATGCAGT
CATATGAGTGCACGTTGTTTGGTTGCTTGCACGGAATATGATTAAGACTTAATAGCTACCCATAACACACAGTTTTACAC
TAGAGTGCCTCGACGACAACAGTACACGGTGGTTGCGGCGCTGCGTCCAACACGACGAGCATGGAGTTGCAGGCGAGCGA
CCTCATCGACGGCGCAGTGAACTATTTGCTAGCGCCATCGCCGCAGAGAAAGTCCGTGTGGAGTAACGAATAGAAGGGCG
TTGAGGCAGATGATGATGAAGAAAAAATGCAATGTGCCCGCCATGGCAGCGTCAGTGTAGTAGGACGAGGAGGAGGAGGC
CGAAAAGAA-----------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------
>SNPs
--------S-----S--S-------S------------------------------------------------------
------------------------------------SSSS------S-----------------S----S-----S----
-------------------S------------------------------------------------------------
--------------------------S----------------S----------------------S-------------
--------------S------------------------S--S---------S-------------------S-------
----------------------SS--S---S---------------------------------SS-S------------
-----------------S---------------S-SS-S---------------------------SSS-----------
------------------------------S------------S----S-------S-----------------------
--------------------------------------------------------------------------------
---------------S--SS-SS-S------------------------S----------------------------S-
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------S-----
---------------S--------------------------S-----S-------------------------------
-------------S--------------------SSSSSSSS---------------------------------S----
--S-------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------------------S-------------------------------------S---S--
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-------------S-----------------S------------------------------------------------
----------------S-SSS-SSSS--------S-----------------------S---------------------
-------------------S-----------S----------S-------------------------------------
------S-----------------S-------------------------------------------------------
--------------------------------------------------------------------------------
------------------SSS---------------S---SS-----------------------------S--SSSSSS
SS-----------------------------------------------------------------------------S
--------------------------------------------------------------------------------
------S-------------------------------------S--------S---S-S------------------S-
-------------------------------SSSSSSSSS----------------------------------------
----------------------------------------------------S---------------S-----------
------------------S--------------------------------------S-S----------S-S-------
S--SSS-S-SS-------------------------S---------------S---S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--------------S--------------S---
----------------------S--S-------------------------S------S----------------S----
-SSSSSSS----------------S-S------S---SS-S-S-------------------------------------
-------S------------------------------------------------------------------------
-----------------------S------S-----------------SSS----------S------------------
----------------------------------S------------------------------------------S--
------------------------S---S-----------S-S--------------S---S------------------
-----------------S--------------------------------------------------------------
-----------S------------------------------S------------SS-----------------------
------------------S------------S------------------------------------------------
-----S-S-----------------------S------------------------------------------------
------S-------SS--S------------------------------------------SS-------S-S-----S-
-----------S---S--------------------S----S------S-------------S----------------S
---S----S----S------------------S----SS-----------S------------S---S-------S---S
SS--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_944
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CCTCGTCGCCTTAAAAGGGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_2082
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GATAGGAGCGCAACGTCTCA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_1847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CTTTCAACGCCAC
CTCGATC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_3045
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GGACGGCGATCATCTCTGAC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_2613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GGCACATCTGCACATGTTGG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_3920
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
TTGGGGCATAGGACGATGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
