Multiple sequence alignment - TraesCS3B01G322500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G322500 chr3B 100.000 3332 0 0 1 3332 521788434 521791765 0.000000e+00 6154.0
1 TraesCS3B01G322500 chr3B 84.536 291 36 5 278 567 521788419 521788137 2.530000e-71 279.0
2 TraesCS3B01G322500 chr3A 92.346 2221 108 20 845 3027 516118703 516120899 0.000000e+00 3103.0
3 TraesCS3B01G322500 chr3A 86.515 571 68 6 1 570 509425218 509425780 1.310000e-173 619.0
4 TraesCS3B01G322500 chr3A 94.805 231 12 0 3102 3332 516120923 516121153 8.790000e-96 361.0
5 TraesCS3B01G322500 chr3A 88.312 231 22 3 3102 3332 618881477 618881702 4.240000e-69 272.0
6 TraesCS3B01G322500 chr3A 84.756 164 19 4 574 736 515950769 515950927 3.440000e-35 159.0
7 TraesCS3B01G322500 chr3A 86.486 74 10 0 420 493 596762044 596762117 7.660000e-12 82.4
8 TraesCS3B01G322500 chr3D 94.420 1613 63 6 838 2424 396433988 396435599 0.000000e+00 2455.0
9 TraesCS3B01G322500 chr3D 94.606 482 22 4 2547 3027 396602708 396603186 0.000000e+00 743.0
10 TraesCS3B01G322500 chr3D 87.587 572 55 9 4 568 583260293 583259731 0.000000e+00 649.0
11 TraesCS3B01G322500 chr3D 91.810 232 15 2 3102 3332 396603210 396603438 1.490000e-83 320.0
12 TraesCS3B01G322500 chr3D 83.981 206 31 2 354 558 583260367 583260571 2.620000e-46 196.0
13 TraesCS3B01G322500 chr4B 86.819 569 68 4 4 572 640810962 640810401 2.180000e-176 628.0
14 TraesCS3B01G322500 chr7D 85.413 569 59 7 1 568 108400046 108400591 1.340000e-158 569.0
15 TraesCS3B01G322500 chr4D 85.512 566 58 12 4 568 6827996 6827454 1.340000e-158 569.0
16 TraesCS3B01G322500 chr5A 87.984 258 27 2 1 255 364964646 364964902 5.400000e-78 302.0
17 TraesCS3B01G322500 chrUn 89.177 231 19 4 3102 3332 238238401 238238177 1.960000e-72 283.0
18 TraesCS3B01G322500 chr5B 88.312 231 19 7 3102 3332 590364131 590364353 1.520000e-68 270.0
19 TraesCS3B01G322500 chr2A 83.137 255 38 5 324 576 100223439 100223188 9.300000e-56 228.0
20 TraesCS3B01G322500 chr2A 80.000 170 34 0 324 493 20172235 20172066 3.490000e-25 126.0
21 TraesCS3B01G322500 chr1D 79.705 271 43 6 302 565 415768691 415768426 5.680000e-43 185.0
22 TraesCS3B01G322500 chr7B 88.514 148 12 3 3102 3249 743207807 743207949 1.230000e-39 174.0
23 TraesCS3B01G322500 chr7B 77.934 213 39 8 360 568 570241082 570240874 3.490000e-25 126.0
24 TraesCS3B01G322500 chr2B 78.226 248 54 0 321 568 26441609 26441362 3.440000e-35 159.0
25 TraesCS3B01G322500 chr6D 80.000 215 31 9 24 234 398734028 398734234 7.450000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G322500 chr3B 521788434 521791765 3331 False 6154.0 6154 100.0000 1 3332 1 chr3B.!!$F1 3331
1 TraesCS3B01G322500 chr3A 516118703 516121153 2450 False 1732.0 3103 93.5755 845 3332 2 chr3A.!!$F5 2487
2 TraesCS3B01G322500 chr3A 509425218 509425780 562 False 619.0 619 86.5150 1 570 1 chr3A.!!$F1 569
3 TraesCS3B01G322500 chr3D 396433988 396435599 1611 False 2455.0 2455 94.4200 838 2424 1 chr3D.!!$F1 1586
4 TraesCS3B01G322500 chr3D 583259731 583260293 562 True 649.0 649 87.5870 4 568 1 chr3D.!!$R1 564
5 TraesCS3B01G322500 chr3D 396602708 396603438 730 False 531.5 743 93.2080 2547 3332 2 chr3D.!!$F3 785
6 TraesCS3B01G322500 chr4B 640810401 640810962 561 True 628.0 628 86.8190 4 572 1 chr4B.!!$R1 568
7 TraesCS3B01G322500 chr7D 108400046 108400591 545 False 569.0 569 85.4130 1 568 1 chr7D.!!$F1 567
8 TraesCS3B01G322500 chr4D 6827454 6827996 542 True 569.0 569 85.5120 4 568 1 chr4D.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 818 0.037326 TGCGAAGGAGTAGTGCAAGG 60.037 55.0 0.0 0.0 31.69 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2764 2809 0.868406 CGGCGAAAATCTGGCTATCC 59.132 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 6.220930 ACACGGAGTAATTTATATGCATCGT 58.779 36.000 0.19 0.00 41.61 3.73
113 114 6.365247 ACACGGAGTAATTTATATGCATCGTC 59.635 38.462 0.19 0.00 41.61 4.20
132 136 1.283029 TCCGTGGCTAGGTAGTAGTGT 59.717 52.381 0.00 0.00 0.00 3.55
163 167 4.379082 GCTAGGTTTATTTCCAACACGGTG 60.379 45.833 6.58 6.58 35.57 4.94
234 241 7.597369 TGATATAAAAGTACATCGTGATTCCCG 59.403 37.037 0.00 0.00 0.00 5.14
283 290 2.645838 ACTATATTGCCACCTGCTGG 57.354 50.000 8.29 8.29 44.08 4.85
319 326 0.389948 GTAGTGCAGCGCCTAGTGTT 60.390 55.000 2.29 0.00 0.00 3.32
320 327 0.389817 TAGTGCAGCGCCTAGTGTTG 60.390 55.000 2.29 0.00 0.00 3.33
321 328 1.961277 GTGCAGCGCCTAGTGTTGT 60.961 57.895 2.29 0.00 0.00 3.32
332 339 2.623889 CCTAGTGTTGTCTAGGCGCTAT 59.376 50.000 7.64 0.00 46.71 2.97
356 363 5.061853 ACTGTATAGTGTAGCGCTTAGCTA 58.938 41.667 18.68 15.57 45.26 3.32
407 414 0.955428 GGGCAGTTTGAGATGCGACA 60.955 55.000 0.00 0.00 43.49 4.35
418 425 2.578163 GATGCGACACTGGCTAGGCA 62.578 60.000 19.10 19.10 34.60 4.75
450 457 0.108804 GAGTTAGGCGCTGCACAGTA 60.109 55.000 7.64 0.00 0.00 2.74
468 475 6.452494 ACAGTATAGTGTGACGCTTAGATT 57.548 37.500 12.50 0.00 0.00 2.40
487 494 1.240256 TTCGGGCGCTACACAAAAAT 58.760 45.000 7.64 0.00 0.00 1.82
495 502 3.120338 GCGCTACACAAAAATGTCAGCTA 60.120 43.478 0.00 0.00 33.85 3.32
498 505 5.393962 GCTACACAAAAATGTCAGCTAAGG 58.606 41.667 0.00 0.00 33.85 2.69
499 506 4.243007 ACACAAAAATGTCAGCTAAGGC 57.757 40.909 0.00 0.00 39.06 4.35
504 511 6.036953 CACAAAAATGTCAGCTAAGGCAAAAA 59.963 34.615 0.00 0.00 41.70 1.94
547 554 9.423061 AGTTTGTGAAATAATTTTGTCCATAGC 57.577 29.630 0.00 0.00 0.00 2.97
574 581 3.364442 TGGATTTTGCCACCGCTG 58.636 55.556 0.00 0.00 35.36 5.18
575 582 2.125952 GGATTTTGCCACCGCTGC 60.126 61.111 0.00 0.00 35.36 5.25
576 583 2.639327 GGATTTTGCCACCGCTGCT 61.639 57.895 0.00 0.00 35.36 4.24
577 584 1.312371 GGATTTTGCCACCGCTGCTA 61.312 55.000 0.00 0.00 35.36 3.49
578 585 0.179163 GATTTTGCCACCGCTGCTAC 60.179 55.000 0.00 0.00 35.36 3.58
579 586 0.893270 ATTTTGCCACCGCTGCTACA 60.893 50.000 0.00 0.00 35.36 2.74
580 587 1.103987 TTTTGCCACCGCTGCTACAA 61.104 50.000 0.00 0.00 35.36 2.41
581 588 1.791103 TTTGCCACCGCTGCTACAAC 61.791 55.000 0.00 0.00 35.36 3.32
582 589 3.788766 GCCACCGCTGCTACAACG 61.789 66.667 0.00 0.00 0.00 4.10
583 590 3.118454 CCACCGCTGCTACAACGG 61.118 66.667 7.81 7.81 46.84 4.44
586 593 2.048597 CCGCTGCTACAACGGTGA 60.049 61.111 7.88 0.00 38.17 4.02
587 594 2.380410 CCGCTGCTACAACGGTGAC 61.380 63.158 7.88 0.00 38.17 3.67
588 595 1.663388 CGCTGCTACAACGGTGACA 60.663 57.895 7.88 0.80 0.00 3.58
589 596 1.860078 GCTGCTACAACGGTGACAC 59.140 57.895 7.88 0.00 0.00 3.67
590 597 0.878523 GCTGCTACAACGGTGACACA 60.879 55.000 7.88 0.00 0.00 3.72
591 598 1.139989 CTGCTACAACGGTGACACAG 58.860 55.000 7.88 7.24 0.00 3.66
592 599 0.249699 TGCTACAACGGTGACACAGG 60.250 55.000 7.88 2.70 0.00 4.00
593 600 0.949105 GCTACAACGGTGACACAGGG 60.949 60.000 7.88 4.64 0.00 4.45
594 601 0.320421 CTACAACGGTGACACAGGGG 60.320 60.000 7.88 4.31 0.00 4.79
595 602 0.759812 TACAACGGTGACACAGGGGA 60.760 55.000 7.88 0.00 0.00 4.81
596 603 1.374947 CAACGGTGACACAGGGGAT 59.625 57.895 10.55 0.00 0.00 3.85
597 604 0.955428 CAACGGTGACACAGGGGATG 60.955 60.000 10.55 0.66 0.00 3.51
598 605 2.436646 CGGTGACACAGGGGATGC 60.437 66.667 8.08 0.00 0.00 3.91
599 606 2.959484 CGGTGACACAGGGGATGCT 61.959 63.158 8.08 0.00 0.00 3.79
600 607 1.377725 GGTGACACAGGGGATGCTG 60.378 63.158 8.08 0.00 0.00 4.41
601 608 2.042831 GTGACACAGGGGATGCTGC 61.043 63.158 0.00 0.00 0.00 5.25
602 609 2.352422 GACACAGGGGATGCTGCA 59.648 61.111 4.13 4.13 0.00 4.41
603 610 1.303561 GACACAGGGGATGCTGCAA 60.304 57.895 6.36 0.00 0.00 4.08
604 611 1.589716 GACACAGGGGATGCTGCAAC 61.590 60.000 6.36 3.28 0.00 4.17
605 612 2.036256 ACAGGGGATGCTGCAACC 59.964 61.111 19.55 19.55 0.00 3.77
606 613 2.036098 CAGGGGATGCTGCAACCA 59.964 61.111 27.08 0.00 0.00 3.67
607 614 2.050350 CAGGGGATGCTGCAACCAG 61.050 63.158 27.08 14.28 42.13 4.00
608 615 2.757099 GGGGATGCTGCAACCAGG 60.757 66.667 27.08 0.00 39.54 4.45
609 616 3.455469 GGGATGCTGCAACCAGGC 61.455 66.667 27.08 9.25 39.54 4.85
610 617 2.677524 GGATGCTGCAACCAGGCA 60.678 61.111 22.30 0.00 42.53 4.75
611 618 2.056223 GGATGCTGCAACCAGGCAT 61.056 57.895 22.30 9.87 43.97 4.40
612 619 1.141019 GATGCTGCAACCAGGCATG 59.859 57.895 14.38 0.00 43.97 4.06
613 620 1.601419 GATGCTGCAACCAGGCATGT 61.601 55.000 14.38 0.00 43.97 3.21
614 621 1.884075 ATGCTGCAACCAGGCATGTG 61.884 55.000 6.36 0.00 43.97 3.21
615 622 2.967397 CTGCAACCAGGCATGTGG 59.033 61.111 0.00 0.85 43.97 4.17
616 623 2.601067 TGCAACCAGGCATGTGGG 60.601 61.111 7.24 3.01 42.54 4.61
617 624 2.601367 GCAACCAGGCATGTGGGT 60.601 61.111 7.24 3.61 42.54 4.51
619 626 2.601367 AACCAGGCATGTGGGTGC 60.601 61.111 7.24 0.00 42.54 5.01
620 627 3.150903 AACCAGGCATGTGGGTGCT 62.151 57.895 7.24 0.00 44.45 4.40
621 628 2.753043 CCAGGCATGTGGGTGCTC 60.753 66.667 0.00 0.00 44.45 4.26
622 629 2.034532 CAGGCATGTGGGTGCTCA 59.965 61.111 0.00 0.00 44.45 4.26
623 630 2.044555 CAGGCATGTGGGTGCTCAG 61.045 63.158 0.00 0.00 44.45 3.35
624 631 2.753043 GGCATGTGGGTGCTCAGG 60.753 66.667 0.00 0.00 44.45 3.86
625 632 2.352422 GCATGTGGGTGCTCAGGA 59.648 61.111 0.00 0.00 41.82 3.86
626 633 1.303561 GCATGTGGGTGCTCAGGAA 60.304 57.895 0.00 0.00 41.82 3.36
627 634 1.589716 GCATGTGGGTGCTCAGGAAC 61.590 60.000 0.00 0.00 41.82 3.62
628 635 0.962356 CATGTGGGTGCTCAGGAACC 60.962 60.000 0.00 0.00 40.50 3.62
629 636 1.426251 ATGTGGGTGCTCAGGAACCA 61.426 55.000 0.00 0.00 43.07 3.67
630 637 1.600916 GTGGGTGCTCAGGAACCAC 60.601 63.158 18.87 18.87 43.07 4.16
631 638 2.358737 GGGTGCTCAGGAACCACG 60.359 66.667 0.00 0.00 43.07 4.94
632 639 2.358737 GGTGCTCAGGAACCACGG 60.359 66.667 0.00 0.00 40.92 4.94
633 640 2.741092 GTGCTCAGGAACCACGGA 59.259 61.111 0.00 0.00 0.00 4.69
634 641 1.374758 GTGCTCAGGAACCACGGAG 60.375 63.158 0.00 0.00 0.00 4.63
635 642 1.533033 TGCTCAGGAACCACGGAGA 60.533 57.895 9.98 0.00 0.00 3.71
636 643 1.216710 GCTCAGGAACCACGGAGAG 59.783 63.158 9.98 0.00 0.00 3.20
637 644 1.536943 GCTCAGGAACCACGGAGAGT 61.537 60.000 9.98 0.00 0.00 3.24
638 645 0.969894 CTCAGGAACCACGGAGAGTT 59.030 55.000 0.00 0.00 0.00 3.01
639 646 0.679505 TCAGGAACCACGGAGAGTTG 59.320 55.000 0.00 0.00 0.00 3.16
640 647 0.320771 CAGGAACCACGGAGAGTTGG 60.321 60.000 0.00 0.00 0.00 3.77
641 648 0.471211 AGGAACCACGGAGAGTTGGA 60.471 55.000 0.00 0.00 0.00 3.53
642 649 0.395312 GGAACCACGGAGAGTTGGAA 59.605 55.000 0.00 0.00 0.00 3.53
643 650 1.509703 GAACCACGGAGAGTTGGAAC 58.490 55.000 0.00 0.00 0.00 3.62
644 651 0.108019 AACCACGGAGAGTTGGAACC 59.892 55.000 0.00 0.00 0.00 3.62
645 652 1.052124 ACCACGGAGAGTTGGAACCA 61.052 55.000 0.00 0.00 0.00 3.67
646 653 0.107831 CCACGGAGAGTTGGAACCAA 59.892 55.000 1.83 1.83 0.00 3.67
655 662 2.640473 TTGGAACCAACCTCCACCT 58.360 52.632 1.83 0.00 42.76 4.00
656 663 0.476771 TTGGAACCAACCTCCACCTC 59.523 55.000 1.83 0.00 42.76 3.85
657 664 0.401395 TGGAACCAACCTCCACCTCT 60.401 55.000 0.00 0.00 38.07 3.69
658 665 1.132657 TGGAACCAACCTCCACCTCTA 60.133 52.381 0.00 0.00 38.07 2.43
659 666 1.278413 GGAACCAACCTCCACCTCTAC 59.722 57.143 0.00 0.00 32.77 2.59
660 667 1.975680 GAACCAACCTCCACCTCTACA 59.024 52.381 0.00 0.00 0.00 2.74
661 668 2.344093 ACCAACCTCCACCTCTACAT 57.656 50.000 0.00 0.00 0.00 2.29
662 669 1.909302 ACCAACCTCCACCTCTACATG 59.091 52.381 0.00 0.00 0.00 3.21
663 670 1.407437 CCAACCTCCACCTCTACATGC 60.407 57.143 0.00 0.00 0.00 4.06
664 671 1.278985 CAACCTCCACCTCTACATGCA 59.721 52.381 0.00 0.00 0.00 3.96
665 672 1.656587 ACCTCCACCTCTACATGCAA 58.343 50.000 0.00 0.00 0.00 4.08
666 673 1.279271 ACCTCCACCTCTACATGCAAC 59.721 52.381 0.00 0.00 0.00 4.17
667 674 1.645034 CTCCACCTCTACATGCAACG 58.355 55.000 0.00 0.00 0.00 4.10
668 675 0.973632 TCCACCTCTACATGCAACGT 59.026 50.000 0.00 0.00 0.00 3.99
669 676 1.067142 TCCACCTCTACATGCAACGTC 60.067 52.381 0.00 0.00 0.00 4.34
670 677 1.337728 CCACCTCTACATGCAACGTCA 60.338 52.381 0.00 0.00 0.00 4.35
671 678 1.726791 CACCTCTACATGCAACGTCAC 59.273 52.381 0.00 0.00 0.00 3.67
672 679 1.618837 ACCTCTACATGCAACGTCACT 59.381 47.619 0.00 0.00 0.00 3.41
673 680 1.995484 CCTCTACATGCAACGTCACTG 59.005 52.381 0.00 0.00 0.00 3.66
674 681 1.391485 CTCTACATGCAACGTCACTGC 59.609 52.381 3.73 3.73 40.35 4.40
679 686 1.063972 TGCAACGTCACTGCAAAGC 59.936 52.632 10.83 0.00 46.47 3.51
680 687 1.063972 GCAACGTCACTGCAAAGCA 59.936 52.632 5.84 0.00 39.69 3.91
699 706 2.674380 GGTGCTGCCCAGGAACAG 60.674 66.667 0.00 5.30 36.40 3.16
703 710 4.625800 CTGCCCAGGAACAGCTAC 57.374 61.111 0.00 0.00 0.00 3.58
704 711 1.986413 CTGCCCAGGAACAGCTACT 59.014 57.895 0.00 0.00 0.00 2.57
705 712 1.195115 CTGCCCAGGAACAGCTACTA 58.805 55.000 0.00 0.00 0.00 1.82
706 713 0.902531 TGCCCAGGAACAGCTACTAC 59.097 55.000 0.00 0.00 0.00 2.73
707 714 0.902531 GCCCAGGAACAGCTACTACA 59.097 55.000 0.00 0.00 0.00 2.74
708 715 1.278127 GCCCAGGAACAGCTACTACAA 59.722 52.381 0.00 0.00 0.00 2.41
709 716 2.290071 GCCCAGGAACAGCTACTACAAA 60.290 50.000 0.00 0.00 0.00 2.83
710 717 3.600388 CCCAGGAACAGCTACTACAAAG 58.400 50.000 0.00 0.00 0.00 2.77
711 718 3.003480 CCAGGAACAGCTACTACAAAGC 58.997 50.000 0.00 0.00 40.40 3.51
712 719 3.003480 CAGGAACAGCTACTACAAAGCC 58.997 50.000 0.00 0.00 41.02 4.35
713 720 2.000447 GGAACAGCTACTACAAAGCCG 59.000 52.381 0.00 0.00 41.02 5.52
714 721 2.000447 GAACAGCTACTACAAAGCCGG 59.000 52.381 0.00 0.00 41.02 6.13
715 722 0.249398 ACAGCTACTACAAAGCCGGG 59.751 55.000 2.18 0.00 41.02 5.73
716 723 0.462047 CAGCTACTACAAAGCCGGGG 60.462 60.000 2.18 0.00 41.02 5.73
717 724 1.153229 GCTACTACAAAGCCGGGGG 60.153 63.158 2.18 0.00 33.73 5.40
718 725 1.907222 GCTACTACAAAGCCGGGGGT 61.907 60.000 2.18 0.00 33.73 4.95
719 726 0.107848 CTACTACAAAGCCGGGGGTG 60.108 60.000 2.18 0.00 0.00 4.61
720 727 0.837260 TACTACAAAGCCGGGGGTGT 60.837 55.000 2.18 0.00 0.00 4.16
721 728 1.074248 CTACAAAGCCGGGGGTGTT 59.926 57.895 2.18 0.00 0.00 3.32
722 729 1.228306 TACAAAGCCGGGGGTGTTG 60.228 57.895 2.18 0.91 0.00 3.33
723 730 2.700407 TACAAAGCCGGGGGTGTTGG 62.700 60.000 2.18 0.00 0.00 3.77
724 731 4.614036 AAAGCCGGGGGTGTTGGG 62.614 66.667 2.18 0.00 0.00 4.12
730 737 4.653888 GGGGGTGTTGGGACGGTG 62.654 72.222 0.00 0.00 0.00 4.94
731 738 3.562232 GGGGTGTTGGGACGGTGA 61.562 66.667 0.00 0.00 0.00 4.02
732 739 2.754375 GGGTGTTGGGACGGTGAT 59.246 61.111 0.00 0.00 0.00 3.06
733 740 1.376812 GGGTGTTGGGACGGTGATC 60.377 63.158 0.00 0.00 0.00 2.92
734 741 1.740296 GGTGTTGGGACGGTGATCG 60.740 63.158 0.00 0.00 45.88 3.69
735 742 1.740296 GTGTTGGGACGGTGATCGG 60.740 63.158 0.00 0.00 44.45 4.18
736 743 2.211410 TGTTGGGACGGTGATCGGT 61.211 57.895 0.00 0.00 44.45 4.69
737 744 1.740296 GTTGGGACGGTGATCGGTG 60.740 63.158 0.00 0.00 44.45 4.94
738 745 1.909287 TTGGGACGGTGATCGGTGA 60.909 57.895 0.00 0.00 44.45 4.02
739 746 1.261938 TTGGGACGGTGATCGGTGAT 61.262 55.000 0.00 0.00 44.45 3.06
740 747 1.067582 GGGACGGTGATCGGTGATC 59.932 63.158 0.00 0.00 44.45 2.92
741 748 1.299165 GGACGGTGATCGGTGATCG 60.299 63.158 0.00 0.00 41.51 3.69
742 749 1.944676 GACGGTGATCGGTGATCGC 60.945 63.158 11.00 11.00 45.50 4.58
743 750 3.024609 CGGTGATCGGTGATCGCG 61.025 66.667 0.00 0.00 46.69 5.87
744 751 2.658593 GGTGATCGGTGATCGCGG 60.659 66.667 6.13 7.47 46.69 6.46
745 752 2.658593 GTGATCGGTGATCGCGGG 60.659 66.667 6.13 0.00 41.51 6.13
746 753 2.831284 TGATCGGTGATCGCGGGA 60.831 61.111 6.13 4.03 41.51 5.14
747 754 2.354773 GATCGGTGATCGCGGGAC 60.355 66.667 6.13 0.00 39.05 4.46
748 755 3.843117 GATCGGTGATCGCGGGACC 62.843 68.421 6.13 9.18 39.05 4.46
777 784 2.412937 GTGCTGCCACGTGCTTTT 59.587 55.556 10.91 0.00 42.00 2.27
778 785 1.658409 GTGCTGCCACGTGCTTTTC 60.658 57.895 10.91 0.00 42.00 2.29
779 786 2.050077 GCTGCCACGTGCTTTTCC 60.050 61.111 10.91 0.00 42.00 3.13
780 787 2.644992 CTGCCACGTGCTTTTCCC 59.355 61.111 10.91 0.00 42.00 3.97
781 788 2.124109 TGCCACGTGCTTTTCCCA 60.124 55.556 10.91 0.00 42.00 4.37
782 789 1.733402 CTGCCACGTGCTTTTCCCAA 61.733 55.000 10.91 0.00 42.00 4.12
783 790 1.299850 GCCACGTGCTTTTCCCAAC 60.300 57.895 10.91 0.00 36.87 3.77
784 791 1.008995 CCACGTGCTTTTCCCAACG 60.009 57.895 10.91 0.00 0.00 4.10
785 792 1.008995 CACGTGCTTTTCCCAACGG 60.009 57.895 0.82 0.00 0.00 4.44
786 793 1.153127 ACGTGCTTTTCCCAACGGA 60.153 52.632 0.00 0.00 35.88 4.69
787 794 1.164041 ACGTGCTTTTCCCAACGGAG 61.164 55.000 0.00 0.00 40.10 4.63
788 795 0.882927 CGTGCTTTTCCCAACGGAGA 60.883 55.000 0.00 0.00 40.10 3.71
789 796 1.314730 GTGCTTTTCCCAACGGAGAA 58.685 50.000 0.00 0.00 40.10 2.87
799 806 0.512952 CAACGGAGAAGTTGCGAAGG 59.487 55.000 0.00 0.00 44.18 3.46
800 807 0.391597 AACGGAGAAGTTGCGAAGGA 59.608 50.000 0.00 0.00 44.18 3.36
801 808 0.038159 ACGGAGAAGTTGCGAAGGAG 60.038 55.000 0.00 0.00 44.18 3.69
802 809 0.038159 CGGAGAAGTTGCGAAGGAGT 60.038 55.000 0.00 0.00 44.18 3.85
803 810 1.201647 CGGAGAAGTTGCGAAGGAGTA 59.798 52.381 0.00 0.00 44.18 2.59
804 811 2.732597 CGGAGAAGTTGCGAAGGAGTAG 60.733 54.545 0.00 0.00 44.18 2.57
805 812 2.231721 GGAGAAGTTGCGAAGGAGTAGT 59.768 50.000 0.00 0.00 0.00 2.73
806 813 3.246619 GAGAAGTTGCGAAGGAGTAGTG 58.753 50.000 0.00 0.00 0.00 2.74
807 814 1.727335 GAAGTTGCGAAGGAGTAGTGC 59.273 52.381 0.00 0.00 0.00 4.40
808 815 0.679505 AGTTGCGAAGGAGTAGTGCA 59.320 50.000 0.00 0.00 0.00 4.57
809 816 1.070134 AGTTGCGAAGGAGTAGTGCAA 59.930 47.619 0.00 0.00 42.68 4.08
810 817 1.461127 GTTGCGAAGGAGTAGTGCAAG 59.539 52.381 0.00 0.00 45.18 4.01
811 818 0.037326 TGCGAAGGAGTAGTGCAAGG 60.037 55.000 0.00 0.00 31.69 3.61
812 819 0.741221 GCGAAGGAGTAGTGCAAGGG 60.741 60.000 0.00 0.00 0.00 3.95
813 820 0.895530 CGAAGGAGTAGTGCAAGGGA 59.104 55.000 0.00 0.00 0.00 4.20
814 821 1.482593 CGAAGGAGTAGTGCAAGGGAT 59.517 52.381 0.00 0.00 0.00 3.85
815 822 2.482142 CGAAGGAGTAGTGCAAGGGATC 60.482 54.545 0.00 0.00 0.00 3.36
816 823 2.254152 AGGAGTAGTGCAAGGGATCA 57.746 50.000 0.00 0.00 0.00 2.92
817 824 2.551270 AGGAGTAGTGCAAGGGATCAA 58.449 47.619 0.00 0.00 0.00 2.57
818 825 2.912956 AGGAGTAGTGCAAGGGATCAAA 59.087 45.455 0.00 0.00 0.00 2.69
819 826 3.054802 AGGAGTAGTGCAAGGGATCAAAG 60.055 47.826 0.00 0.00 0.00 2.77
820 827 3.055094 GGAGTAGTGCAAGGGATCAAAGA 60.055 47.826 0.00 0.00 0.00 2.52
821 828 4.565652 GGAGTAGTGCAAGGGATCAAAGAA 60.566 45.833 0.00 0.00 0.00 2.52
822 829 4.985538 AGTAGTGCAAGGGATCAAAGAAA 58.014 39.130 0.00 0.00 0.00 2.52
823 830 5.385198 AGTAGTGCAAGGGATCAAAGAAAA 58.615 37.500 0.00 0.00 0.00 2.29
824 831 5.833131 AGTAGTGCAAGGGATCAAAGAAAAA 59.167 36.000 0.00 0.00 0.00 1.94
825 832 4.948847 AGTGCAAGGGATCAAAGAAAAAC 58.051 39.130 0.00 0.00 0.00 2.43
826 833 3.735746 GTGCAAGGGATCAAAGAAAAACG 59.264 43.478 0.00 0.00 0.00 3.60
827 834 3.243704 TGCAAGGGATCAAAGAAAAACGG 60.244 43.478 0.00 0.00 0.00 4.44
828 835 3.317150 CAAGGGATCAAAGAAAAACGGC 58.683 45.455 0.00 0.00 0.00 5.68
829 836 2.593026 AGGGATCAAAGAAAAACGGCA 58.407 42.857 0.00 0.00 0.00 5.69
830 837 2.558359 AGGGATCAAAGAAAAACGGCAG 59.442 45.455 0.00 0.00 0.00 4.85
831 838 2.556622 GGGATCAAAGAAAAACGGCAGA 59.443 45.455 0.00 0.00 0.00 4.26
832 839 3.366374 GGGATCAAAGAAAAACGGCAGAG 60.366 47.826 0.00 0.00 0.00 3.35
833 840 3.502211 GGATCAAAGAAAAACGGCAGAGA 59.498 43.478 0.00 0.00 0.00 3.10
834 841 4.023193 GGATCAAAGAAAAACGGCAGAGAA 60.023 41.667 0.00 0.00 0.00 2.87
835 842 4.974368 TCAAAGAAAAACGGCAGAGAAA 57.026 36.364 0.00 0.00 0.00 2.52
836 843 5.317733 TCAAAGAAAAACGGCAGAGAAAA 57.682 34.783 0.00 0.00 0.00 2.29
837 844 5.099575 TCAAAGAAAAACGGCAGAGAAAAC 58.900 37.500 0.00 0.00 0.00 2.43
838 845 4.983671 AAGAAAAACGGCAGAGAAAACT 57.016 36.364 0.00 0.00 0.00 2.66
839 846 4.292977 AGAAAAACGGCAGAGAAAACTG 57.707 40.909 0.00 0.00 40.43 3.16
840 847 3.945285 AGAAAAACGGCAGAGAAAACTGA 59.055 39.130 0.00 0.00 39.94 3.41
841 848 4.398044 AGAAAAACGGCAGAGAAAACTGAA 59.602 37.500 0.00 0.00 39.94 3.02
842 849 3.971032 AAACGGCAGAGAAAACTGAAG 57.029 42.857 0.00 0.00 39.94 3.02
843 850 1.884235 ACGGCAGAGAAAACTGAAGG 58.116 50.000 0.00 0.00 39.94 3.46
876 883 7.060633 GCGATTAATCAAGAATTTGAACAACGT 59.939 33.333 15.57 0.00 45.82 3.99
913 934 2.035626 ATGAAACCGCCACCTGGG 59.964 61.111 0.00 0.00 40.85 4.45
930 951 2.447714 GGTCCTGATCCCCTGCTCC 61.448 68.421 0.00 0.00 0.00 4.70
1051 1072 0.257616 CGTTCTCCTCCTCCTCCTCT 59.742 60.000 0.00 0.00 0.00 3.69
1052 1073 1.749286 CGTTCTCCTCCTCCTCCTCTC 60.749 61.905 0.00 0.00 0.00 3.20
1368 1408 1.227205 GAGCGACCTCATCTGGCTG 60.227 63.158 0.00 0.00 38.03 4.85
1452 1492 2.063979 CACCTACCGCCAGATCCCA 61.064 63.158 0.00 0.00 0.00 4.37
1867 1907 2.415090 CCCAACCTCTACTACGTGAACG 60.415 54.545 0.00 0.40 46.33 3.95
1913 1953 4.097361 GGTCACCGGGGGCTTCTC 62.097 72.222 8.94 0.00 0.00 2.87
1928 1968 1.897225 TTCTCCAGCTGCAGCCTCTC 61.897 60.000 34.39 7.70 43.38 3.20
1929 1969 3.388703 CTCCAGCTGCAGCCTCTCC 62.389 68.421 34.39 6.88 43.38 3.71
1930 1970 3.400928 CCAGCTGCAGCCTCTCCT 61.401 66.667 34.39 12.93 43.38 3.69
1932 1972 1.745864 CAGCTGCAGCCTCTCCTTG 60.746 63.158 34.39 20.26 43.38 3.61
2392 2432 4.065281 GAGTGTGTACCGCCGCCT 62.065 66.667 0.00 0.00 0.00 5.52
2420 2460 9.528018 AAATTGTTGTTTTCAGGTGTTACATAG 57.472 29.630 0.00 0.00 0.00 2.23
2426 2466 9.480053 TTGTTTTCAGGTGTTACATAGTACTAC 57.520 33.333 4.31 0.00 0.00 2.73
2431 2471 9.690913 TTCAGGTGTTACATAGTACTACTACAT 57.309 33.333 4.31 0.00 32.84 2.29
2434 2474 9.339850 AGGTGTTACATAGTACTACTACATCAG 57.660 37.037 4.31 0.00 32.84 2.90
2435 2475 9.118300 GGTGTTACATAGTACTACTACATCAGT 57.882 37.037 4.31 0.00 41.62 3.41
2443 2483 7.393841 AGTACTACTACATCAGTGGAGAAAC 57.606 40.000 0.00 0.00 38.71 2.78
2470 2510 1.811965 CATGGTCGCACTGAATTTCCA 59.188 47.619 0.00 0.00 0.00 3.53
2473 2513 3.680490 TGGTCGCACTGAATTTCCATAA 58.320 40.909 0.00 0.00 0.00 1.90
2495 2535 2.485795 TTGCAAACCCACGCTCACC 61.486 57.895 0.00 0.00 0.00 4.02
2499 2542 2.268076 AAACCCACGCTCACCATGC 61.268 57.895 0.00 0.00 0.00 4.06
2528 2571 5.106237 GCTTTGCAATGATCTCTCAGAACTT 60.106 40.000 15.97 0.00 34.12 2.66
2529 2572 6.492007 TTTGCAATGATCTCTCAGAACTTC 57.508 37.500 0.00 0.00 34.12 3.01
2535 2578 1.166129 TCTCTCAGAACTTCGTCCCG 58.834 55.000 0.00 0.00 0.00 5.14
2536 2579 0.882474 CTCTCAGAACTTCGTCCCGT 59.118 55.000 0.00 0.00 0.00 5.28
2538 2581 1.268899 TCTCAGAACTTCGTCCCGTTC 59.731 52.381 0.00 0.00 39.74 3.95
2585 2628 3.690139 TGAAAGTAACAAAAGCACGTCCA 59.310 39.130 0.00 0.00 0.00 4.02
2597 2642 4.202245 AGCACGTCCACTGTACATAAAT 57.798 40.909 0.00 0.00 0.00 1.40
2601 2646 4.032445 CACGTCCACTGTACATAAATTCCG 59.968 45.833 0.00 0.00 0.00 4.30
2605 2650 5.820947 GTCCACTGTACATAAATTCCGGATT 59.179 40.000 4.15 0.00 0.00 3.01
2650 2695 2.106683 CCCGATCCACGACCAAAGC 61.107 63.158 0.00 0.00 45.77 3.51
2653 2698 1.560923 CGATCCACGACCAAAGCTAG 58.439 55.000 0.00 0.00 45.77 3.42
2668 2713 7.171653 ACCAAAGCTAGAAGAATTAAAGCTCT 58.828 34.615 0.00 0.00 43.14 4.09
2764 2809 0.038618 TGACACGACGACATTCCAGG 60.039 55.000 0.00 0.00 0.00 4.45
2779 2824 3.864789 TCCAGGGATAGCCAGATTTTC 57.135 47.619 0.00 0.00 35.15 2.29
2806 2852 4.712476 AGTCAACTGATCTTTTGCTGAGT 58.288 39.130 0.00 0.00 0.00 3.41
2807 2853 5.128919 AGTCAACTGATCTTTTGCTGAGTT 58.871 37.500 0.00 0.00 0.00 3.01
2810 2856 2.555757 ACTGATCTTTTGCTGAGTTGCC 59.444 45.455 0.00 0.00 0.00 4.52
2939 2985 0.749454 CAGCCCACCTGTATTGCTCC 60.749 60.000 0.00 0.00 36.79 4.70
3006 3052 9.097257 CTTTCACAAACATTTCAACCTACAAAT 57.903 29.630 0.00 0.00 0.00 2.32
3022 3068 3.115554 ACAAATGTCGAAACAAAGCAGC 58.884 40.909 0.00 0.00 39.30 5.25
3023 3069 3.181487 ACAAATGTCGAAACAAAGCAGCT 60.181 39.130 0.00 0.00 39.30 4.24
3024 3070 2.977405 ATGTCGAAACAAAGCAGCTC 57.023 45.000 0.00 0.00 39.30 4.09
3025 3071 1.662517 TGTCGAAACAAAGCAGCTCA 58.337 45.000 0.00 0.00 30.70 4.26
3026 3072 1.599071 TGTCGAAACAAAGCAGCTCAG 59.401 47.619 0.00 0.00 30.70 3.35
3027 3073 1.867233 GTCGAAACAAAGCAGCTCAGA 59.133 47.619 0.00 0.00 0.00 3.27
3028 3074 2.287915 GTCGAAACAAAGCAGCTCAGAA 59.712 45.455 0.00 0.00 0.00 3.02
3029 3075 2.545526 TCGAAACAAAGCAGCTCAGAAG 59.454 45.455 0.00 0.00 0.00 2.85
3030 3076 2.350197 CGAAACAAAGCAGCTCAGAAGG 60.350 50.000 0.00 0.00 0.00 3.46
3031 3077 1.613836 AACAAAGCAGCTCAGAAGGG 58.386 50.000 0.00 0.00 0.00 3.95
3032 3078 0.251077 ACAAAGCAGCTCAGAAGGGG 60.251 55.000 0.00 0.00 0.00 4.79
3033 3079 1.303970 AAAGCAGCTCAGAAGGGGC 60.304 57.895 0.00 0.00 0.00 5.80
3034 3080 3.618780 AAGCAGCTCAGAAGGGGCG 62.619 63.158 0.00 0.00 0.00 6.13
3035 3081 4.400961 GCAGCTCAGAAGGGGCGT 62.401 66.667 0.00 0.00 0.00 5.68
3036 3082 3.019003 GCAGCTCAGAAGGGGCGTA 62.019 63.158 0.00 0.00 0.00 4.42
3037 3083 1.153549 CAGCTCAGAAGGGGCGTAC 60.154 63.158 0.00 0.00 0.00 3.67
3038 3084 1.609501 AGCTCAGAAGGGGCGTACA 60.610 57.895 0.00 0.00 0.00 2.90
3039 3085 0.978146 AGCTCAGAAGGGGCGTACAT 60.978 55.000 0.00 0.00 0.00 2.29
3040 3086 0.750850 GCTCAGAAGGGGCGTACATA 59.249 55.000 0.00 0.00 0.00 2.29
3041 3087 1.344763 GCTCAGAAGGGGCGTACATAT 59.655 52.381 0.00 0.00 0.00 1.78
3042 3088 2.868044 GCTCAGAAGGGGCGTACATATG 60.868 54.545 0.00 0.00 0.00 1.78
3043 3089 2.365617 CTCAGAAGGGGCGTACATATGT 59.634 50.000 13.93 13.93 0.00 2.29
3044 3090 3.568443 TCAGAAGGGGCGTACATATGTA 58.432 45.455 11.62 11.62 0.00 2.29
3045 3091 3.962063 TCAGAAGGGGCGTACATATGTAA 59.038 43.478 17.07 0.00 31.52 2.41
3046 3092 4.056050 CAGAAGGGGCGTACATATGTAAC 58.944 47.826 17.07 12.00 31.52 2.50
3047 3093 3.707611 AGAAGGGGCGTACATATGTAACA 59.292 43.478 17.07 0.00 31.52 2.41
3048 3094 3.464111 AGGGGCGTACATATGTAACAC 57.536 47.619 17.07 12.97 31.52 3.32
3049 3095 2.129607 GGGGCGTACATATGTAACACG 58.870 52.381 20.28 20.28 32.50 4.49
3050 3096 1.523934 GGGCGTACATATGTAACACGC 59.476 52.381 32.04 32.04 46.62 5.34
3051 3097 2.916735 GCGTACATATGTAACACGCC 57.083 50.000 30.75 19.05 43.61 5.68
3052 3098 2.466846 GCGTACATATGTAACACGCCT 58.533 47.619 30.75 3.21 43.61 5.52
3053 3099 2.470257 GCGTACATATGTAACACGCCTC 59.530 50.000 30.75 13.65 43.61 4.70
3054 3100 3.047796 CGTACATATGTAACACGCCTCC 58.952 50.000 17.07 1.23 31.52 4.30
3055 3101 3.489568 CGTACATATGTAACACGCCTCCA 60.490 47.826 17.07 0.00 31.52 3.86
3056 3102 3.838244 ACATATGTAACACGCCTCCAT 57.162 42.857 6.56 0.00 0.00 3.41
3057 3103 3.466836 ACATATGTAACACGCCTCCATG 58.533 45.455 6.56 0.00 0.00 3.66
3058 3104 1.948104 TATGTAACACGCCTCCATGC 58.052 50.000 0.00 0.00 0.00 4.06
3059 3105 0.035534 ATGTAACACGCCTCCATGCA 60.036 50.000 0.00 0.00 0.00 3.96
3060 3106 0.250510 TGTAACACGCCTCCATGCAA 60.251 50.000 0.00 0.00 0.00 4.08
3061 3107 0.168128 GTAACACGCCTCCATGCAAC 59.832 55.000 0.00 0.00 0.00 4.17
3062 3108 0.250510 TAACACGCCTCCATGCAACA 60.251 50.000 0.00 0.00 0.00 3.33
3063 3109 1.795170 AACACGCCTCCATGCAACAC 61.795 55.000 0.00 0.00 0.00 3.32
3064 3110 2.672996 ACGCCTCCATGCAACACC 60.673 61.111 0.00 0.00 0.00 4.16
3065 3111 2.360350 CGCCTCCATGCAACACCT 60.360 61.111 0.00 0.00 0.00 4.00
3066 3112 2.401766 CGCCTCCATGCAACACCTC 61.402 63.158 0.00 0.00 0.00 3.85
3067 3113 1.303561 GCCTCCATGCAACACCTCA 60.304 57.895 0.00 0.00 0.00 3.86
3068 3114 0.682209 GCCTCCATGCAACACCTCAT 60.682 55.000 0.00 0.00 0.00 2.90
3069 3115 1.408683 GCCTCCATGCAACACCTCATA 60.409 52.381 0.00 0.00 0.00 2.15
3070 3116 2.569059 CCTCCATGCAACACCTCATAG 58.431 52.381 0.00 0.00 0.00 2.23
3071 3117 2.092753 CCTCCATGCAACACCTCATAGT 60.093 50.000 0.00 0.00 0.00 2.12
3072 3118 3.614092 CTCCATGCAACACCTCATAGTT 58.386 45.455 0.00 0.00 0.00 2.24
3073 3119 3.346315 TCCATGCAACACCTCATAGTTG 58.654 45.455 0.00 0.00 45.91 3.16
3074 3120 3.084039 CCATGCAACACCTCATAGTTGT 58.916 45.455 0.00 0.00 45.16 3.32
3075 3121 4.019771 TCCATGCAACACCTCATAGTTGTA 60.020 41.667 0.00 3.24 45.16 2.41
3076 3122 4.883585 CCATGCAACACCTCATAGTTGTAT 59.116 41.667 0.00 5.33 46.92 2.29
3077 3123 5.357878 CCATGCAACACCTCATAGTTGTATT 59.642 40.000 6.22 0.00 44.78 1.89
3078 3124 6.458751 CCATGCAACACCTCATAGTTGTATTC 60.459 42.308 6.22 0.00 44.78 1.75
3079 3125 5.555966 TGCAACACCTCATAGTTGTATTCA 58.444 37.500 7.08 0.00 45.16 2.57
3080 3126 5.643348 TGCAACACCTCATAGTTGTATTCAG 59.357 40.000 7.08 0.00 45.16 3.02
3081 3127 5.874810 GCAACACCTCATAGTTGTATTCAGA 59.125 40.000 7.08 0.00 45.16 3.27
3082 3128 6.371548 GCAACACCTCATAGTTGTATTCAGAA 59.628 38.462 7.08 0.00 45.16 3.02
3083 3129 7.094805 GCAACACCTCATAGTTGTATTCAGAAA 60.095 37.037 7.08 0.00 45.16 2.52
3094 3140 6.373774 AGTTGTATTCAGAAATTCAGCCAGAG 59.626 38.462 0.00 0.00 28.05 3.35
3095 3141 5.188434 TGTATTCAGAAATTCAGCCAGAGG 58.812 41.667 0.00 0.00 0.00 3.69
3096 3142 2.795231 TCAGAAATTCAGCCAGAGGG 57.205 50.000 0.00 0.00 37.18 4.30
3097 3143 2.269023 TCAGAAATTCAGCCAGAGGGA 58.731 47.619 0.00 0.00 35.59 4.20
3098 3144 2.644299 TCAGAAATTCAGCCAGAGGGAA 59.356 45.455 0.00 0.00 35.59 3.97
3099 3145 3.267812 TCAGAAATTCAGCCAGAGGGAAT 59.732 43.478 0.00 0.00 35.59 3.01
3139 3197 3.135712 TGTCCAGTGGAACATACAAGTGT 59.864 43.478 15.09 0.00 44.52 3.55
3159 3217 8.999431 CAAGTGTGTTGTTACCTTCTTATGTAT 58.001 33.333 0.00 0.00 0.00 2.29
3177 3235 9.265901 CTTATGTATGGAACTAGATGAAACTGG 57.734 37.037 0.00 0.00 0.00 4.00
3180 3238 4.974645 TGGAACTAGATGAAACTGGTGT 57.025 40.909 0.00 0.00 32.26 4.16
3215 3273 1.239347 GTCAGGTGCTGGTTTCTTCC 58.761 55.000 0.00 0.00 31.51 3.46
3314 3372 4.022242 CACTGGAAGACTTCTCTTTACCGA 60.022 45.833 14.72 0.00 36.82 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 3.399330 TGGCTAGTAATTTATGCTCCGC 58.601 45.455 0.00 0.00 0.00 5.54
112 113 1.283029 ACACTACTACCTAGCCACGGA 59.717 52.381 0.00 0.00 0.00 4.69
113 114 1.760192 ACACTACTACCTAGCCACGG 58.240 55.000 0.00 0.00 0.00 4.94
132 136 6.142259 TGGAAATAAACCTAGCAACCCTAA 57.858 37.500 0.00 0.00 0.00 2.69
163 167 3.258228 CAAGTTGGTTGTTTGGTGGTTC 58.742 45.455 0.00 0.00 0.00 3.62
229 236 1.218047 CGAGTCAATGCCTCGGGAA 59.782 57.895 5.73 0.00 46.09 3.97
283 290 3.612860 CACTACTCGGATTACAACAGTGC 59.387 47.826 0.00 0.00 0.00 4.40
284 291 3.612860 GCACTACTCGGATTACAACAGTG 59.387 47.826 0.00 0.00 36.18 3.66
319 326 5.642491 CACTATACAGTATAGCGCCTAGACA 59.358 44.000 22.80 0.00 41.43 3.41
320 327 5.642919 ACACTATACAGTATAGCGCCTAGAC 59.357 44.000 22.80 3.57 41.43 2.59
321 328 5.802465 ACACTATACAGTATAGCGCCTAGA 58.198 41.667 22.80 0.00 41.43 2.43
332 339 5.354054 GCTAAGCGCTACACTATACAGTA 57.646 43.478 12.05 0.00 32.02 2.74
350 357 3.254470 TGTGCAACGCCTAATAGCTAA 57.746 42.857 0.00 0.00 42.39 3.09
356 363 2.436417 AGTCAATGTGCAACGCCTAAT 58.564 42.857 0.00 0.00 42.39 1.73
398 405 1.819229 CCTAGCCAGTGTCGCATCT 59.181 57.895 0.00 0.00 0.00 2.90
400 407 1.976132 ATGCCTAGCCAGTGTCGCAT 61.976 55.000 0.00 0.00 32.32 4.73
407 414 1.330655 ACGCTACATGCCTAGCCAGT 61.331 55.000 9.15 1.31 36.53 4.00
418 425 2.359531 GCCTAACTCTCAGACGCTACAT 59.640 50.000 0.00 0.00 0.00 2.29
434 441 1.754803 ACTATACTGTGCAGCGCCTAA 59.245 47.619 2.29 0.00 0.00 2.69
450 457 4.360563 CCGAAATCTAAGCGTCACACTAT 58.639 43.478 0.00 0.00 0.00 2.12
468 475 1.068885 CATTTTTGTGTAGCGCCCGAA 60.069 47.619 2.29 0.00 0.00 4.30
547 554 4.524316 TGGCAAAATCCACAAATCTGAG 57.476 40.909 0.00 0.00 0.00 3.35
572 579 1.139989 CTGTGTCACCGTTGTAGCAG 58.860 55.000 0.00 0.00 0.00 4.24
573 580 0.249699 CCTGTGTCACCGTTGTAGCA 60.250 55.000 0.00 0.00 0.00 3.49
574 581 0.949105 CCCTGTGTCACCGTTGTAGC 60.949 60.000 0.00 0.00 0.00 3.58
575 582 0.320421 CCCCTGTGTCACCGTTGTAG 60.320 60.000 0.00 0.00 0.00 2.74
576 583 0.759812 TCCCCTGTGTCACCGTTGTA 60.760 55.000 0.00 0.00 0.00 2.41
577 584 1.415672 ATCCCCTGTGTCACCGTTGT 61.416 55.000 0.00 0.00 0.00 3.32
578 585 0.955428 CATCCCCTGTGTCACCGTTG 60.955 60.000 0.00 0.00 0.00 4.10
579 586 1.374947 CATCCCCTGTGTCACCGTT 59.625 57.895 0.00 0.00 0.00 4.44
580 587 3.068881 CATCCCCTGTGTCACCGT 58.931 61.111 0.00 0.00 0.00 4.83
581 588 2.436646 GCATCCCCTGTGTCACCG 60.437 66.667 0.00 0.00 0.00 4.94
582 589 1.377725 CAGCATCCCCTGTGTCACC 60.378 63.158 0.00 0.00 0.00 4.02
583 590 2.042831 GCAGCATCCCCTGTGTCAC 61.043 63.158 0.00 0.00 35.28 3.67
584 591 2.066700 TTGCAGCATCCCCTGTGTCA 62.067 55.000 0.00 0.00 35.28 3.58
585 592 1.303561 TTGCAGCATCCCCTGTGTC 60.304 57.895 0.00 0.00 35.28 3.67
586 593 1.604593 GTTGCAGCATCCCCTGTGT 60.605 57.895 0.00 0.00 35.28 3.72
587 594 2.345760 GGTTGCAGCATCCCCTGTG 61.346 63.158 11.09 0.00 35.28 3.66
588 595 2.036256 GGTTGCAGCATCCCCTGT 59.964 61.111 11.09 0.00 35.28 4.00
589 596 2.036098 TGGTTGCAGCATCCCCTG 59.964 61.111 18.31 0.00 35.93 4.45
590 597 2.357836 CTGGTTGCAGCATCCCCT 59.642 61.111 18.31 0.00 0.00 4.79
591 598 2.757099 CCTGGTTGCAGCATCCCC 60.757 66.667 18.31 9.27 0.00 4.81
592 599 3.455469 GCCTGGTTGCAGCATCCC 61.455 66.667 18.31 11.63 0.00 3.85
593 600 2.056223 ATGCCTGGTTGCAGCATCC 61.056 57.895 14.85 14.85 43.58 3.51
594 601 1.141019 CATGCCTGGTTGCAGCATC 59.859 57.895 7.35 0.00 45.16 3.91
596 603 2.203523 ACATGCCTGGTTGCAGCA 60.204 55.556 2.05 0.73 45.93 4.41
597 604 2.260434 CACATGCCTGGTTGCAGC 59.740 61.111 0.00 0.00 45.93 5.25
598 605 2.642254 CCCACATGCCTGGTTGCAG 61.642 63.158 0.00 0.00 45.93 4.41
599 606 2.601067 CCCACATGCCTGGTTGCA 60.601 61.111 0.00 0.00 46.94 4.08
600 607 2.601367 ACCCACATGCCTGGTTGC 60.601 61.111 0.00 0.00 0.00 4.17
601 608 2.934570 GCACCCACATGCCTGGTTG 61.935 63.158 0.00 0.00 39.86 3.77
602 609 2.601367 GCACCCACATGCCTGGTT 60.601 61.111 0.00 0.00 39.86 3.67
608 615 1.303561 TTCCTGAGCACCCACATGC 60.304 57.895 0.00 0.00 46.50 4.06
609 616 0.962356 GGTTCCTGAGCACCCACATG 60.962 60.000 0.00 0.00 0.00 3.21
610 617 1.380302 GGTTCCTGAGCACCCACAT 59.620 57.895 0.00 0.00 0.00 3.21
611 618 2.075566 TGGTTCCTGAGCACCCACA 61.076 57.895 0.00 0.00 31.24 4.17
612 619 2.836154 TGGTTCCTGAGCACCCAC 59.164 61.111 0.00 0.00 31.24 4.61
617 624 1.533033 TCTCCGTGGTTCCTGAGCA 60.533 57.895 0.00 0.00 0.00 4.26
618 625 1.216710 CTCTCCGTGGTTCCTGAGC 59.783 63.158 0.00 0.00 0.00 4.26
619 626 0.969894 AACTCTCCGTGGTTCCTGAG 59.030 55.000 0.00 0.00 0.00 3.35
620 627 0.679505 CAACTCTCCGTGGTTCCTGA 59.320 55.000 0.00 0.00 0.00 3.86
621 628 0.320771 CCAACTCTCCGTGGTTCCTG 60.321 60.000 0.00 0.00 0.00 3.86
622 629 0.471211 TCCAACTCTCCGTGGTTCCT 60.471 55.000 0.00 0.00 0.00 3.36
623 630 0.395312 TTCCAACTCTCCGTGGTTCC 59.605 55.000 0.00 0.00 0.00 3.62
624 631 1.509703 GTTCCAACTCTCCGTGGTTC 58.490 55.000 0.00 0.00 0.00 3.62
625 632 0.108019 GGTTCCAACTCTCCGTGGTT 59.892 55.000 0.00 0.00 0.00 3.67
626 633 1.052124 TGGTTCCAACTCTCCGTGGT 61.052 55.000 0.00 0.00 0.00 4.16
627 634 0.107831 TTGGTTCCAACTCTCCGTGG 59.892 55.000 0.00 0.00 0.00 4.94
628 635 1.226746 GTTGGTTCCAACTCTCCGTG 58.773 55.000 22.68 0.00 41.97 4.94
629 636 0.108019 GGTTGGTTCCAACTCTCCGT 59.892 55.000 26.80 0.00 43.94 4.69
630 637 0.396811 AGGTTGGTTCCAACTCTCCG 59.603 55.000 26.80 0.00 43.94 4.63
631 638 1.271434 GGAGGTTGGTTCCAACTCTCC 60.271 57.143 31.48 31.48 45.41 3.71
632 639 1.420138 TGGAGGTTGGTTCCAACTCTC 59.580 52.381 26.80 26.56 43.94 3.20
633 640 1.143073 GTGGAGGTTGGTTCCAACTCT 59.857 52.381 26.80 22.33 45.79 3.24
634 641 1.605753 GTGGAGGTTGGTTCCAACTC 58.394 55.000 26.80 21.61 45.79 3.01
635 642 0.185175 GGTGGAGGTTGGTTCCAACT 59.815 55.000 26.80 16.52 46.69 3.16
636 643 2.728397 GGTGGAGGTTGGTTCCAAC 58.272 57.895 22.10 22.10 45.79 3.77
637 644 0.476771 GAGGTGGAGGTTGGTTCCAA 59.523 55.000 0.00 0.00 45.79 3.53
638 645 0.401395 AGAGGTGGAGGTTGGTTCCA 60.401 55.000 0.00 0.00 42.30 3.53
639 646 1.278413 GTAGAGGTGGAGGTTGGTTCC 59.722 57.143 0.00 0.00 35.20 3.62
640 647 1.975680 TGTAGAGGTGGAGGTTGGTTC 59.024 52.381 0.00 0.00 0.00 3.62
641 648 2.112279 TGTAGAGGTGGAGGTTGGTT 57.888 50.000 0.00 0.00 0.00 3.67
642 649 1.909302 CATGTAGAGGTGGAGGTTGGT 59.091 52.381 0.00 0.00 0.00 3.67
643 650 1.407437 GCATGTAGAGGTGGAGGTTGG 60.407 57.143 0.00 0.00 0.00 3.77
644 651 1.278985 TGCATGTAGAGGTGGAGGTTG 59.721 52.381 0.00 0.00 0.00 3.77
645 652 1.656587 TGCATGTAGAGGTGGAGGTT 58.343 50.000 0.00 0.00 0.00 3.50
646 653 1.279271 GTTGCATGTAGAGGTGGAGGT 59.721 52.381 0.00 0.00 0.00 3.85
647 654 1.740380 CGTTGCATGTAGAGGTGGAGG 60.740 57.143 0.00 0.00 0.00 4.30
648 655 1.066858 ACGTTGCATGTAGAGGTGGAG 60.067 52.381 0.00 0.00 0.00 3.86
649 656 0.973632 ACGTTGCATGTAGAGGTGGA 59.026 50.000 0.00 0.00 0.00 4.02
650 657 1.337728 TGACGTTGCATGTAGAGGTGG 60.338 52.381 0.00 0.00 0.00 4.61
651 658 1.726791 GTGACGTTGCATGTAGAGGTG 59.273 52.381 0.00 0.00 0.00 4.00
652 659 1.618837 AGTGACGTTGCATGTAGAGGT 59.381 47.619 0.00 0.00 0.00 3.85
653 660 1.995484 CAGTGACGTTGCATGTAGAGG 59.005 52.381 0.00 0.00 0.00 3.69
654 661 1.391485 GCAGTGACGTTGCATGTAGAG 59.609 52.381 5.84 0.00 41.17 2.43
655 662 1.270041 TGCAGTGACGTTGCATGTAGA 60.270 47.619 9.26 0.00 45.89 2.59
656 663 1.147473 TGCAGTGACGTTGCATGTAG 58.853 50.000 9.26 0.00 45.89 2.74
657 664 3.297391 TGCAGTGACGTTGCATGTA 57.703 47.368 9.26 0.00 45.89 2.29
658 665 4.139510 TGCAGTGACGTTGCATGT 57.860 50.000 9.26 0.00 45.89 3.21
662 669 1.063972 TGCTTTGCAGTGACGTTGC 59.936 52.632 3.73 3.73 41.86 4.17
682 689 2.674380 CTGTTCCTGGGCAGCACC 60.674 66.667 0.00 0.00 37.93 5.01
686 693 1.134670 GTAGTAGCTGTTCCTGGGCAG 60.135 57.143 12.65 12.65 35.93 4.85
687 694 0.902531 GTAGTAGCTGTTCCTGGGCA 59.097 55.000 0.00 0.00 0.00 5.36
688 695 0.902531 TGTAGTAGCTGTTCCTGGGC 59.097 55.000 0.00 0.00 0.00 5.36
689 696 3.600388 CTTTGTAGTAGCTGTTCCTGGG 58.400 50.000 0.00 0.00 0.00 4.45
690 697 3.003480 GCTTTGTAGTAGCTGTTCCTGG 58.997 50.000 0.00 0.00 35.74 4.45
691 698 3.003480 GGCTTTGTAGTAGCTGTTCCTG 58.997 50.000 0.00 0.00 38.67 3.86
692 699 2.353803 CGGCTTTGTAGTAGCTGTTCCT 60.354 50.000 0.00 0.00 39.60 3.36
693 700 2.000447 CGGCTTTGTAGTAGCTGTTCC 59.000 52.381 0.00 0.00 39.60 3.62
694 701 2.000447 CCGGCTTTGTAGTAGCTGTTC 59.000 52.381 0.00 0.00 42.25 3.18
695 702 1.338769 CCCGGCTTTGTAGTAGCTGTT 60.339 52.381 0.00 0.00 42.25 3.16
696 703 0.249398 CCCGGCTTTGTAGTAGCTGT 59.751 55.000 0.00 0.00 42.25 4.40
697 704 0.462047 CCCCGGCTTTGTAGTAGCTG 60.462 60.000 0.00 0.00 43.20 4.24
698 705 1.623542 CCCCCGGCTTTGTAGTAGCT 61.624 60.000 0.00 0.00 38.67 3.32
699 706 1.153229 CCCCCGGCTTTGTAGTAGC 60.153 63.158 0.00 0.00 37.91 3.58
700 707 0.107848 CACCCCCGGCTTTGTAGTAG 60.108 60.000 0.00 0.00 0.00 2.57
701 708 0.837260 ACACCCCCGGCTTTGTAGTA 60.837 55.000 0.00 0.00 0.00 1.82
702 709 1.712000 AACACCCCCGGCTTTGTAGT 61.712 55.000 0.00 0.00 0.00 2.73
703 710 1.074248 AACACCCCCGGCTTTGTAG 59.926 57.895 0.00 0.00 0.00 2.74
704 711 1.228306 CAACACCCCCGGCTTTGTA 60.228 57.895 0.00 0.00 0.00 2.41
705 712 2.520741 CAACACCCCCGGCTTTGT 60.521 61.111 0.00 0.00 0.00 2.83
706 713 3.302344 CCAACACCCCCGGCTTTG 61.302 66.667 0.00 0.00 0.00 2.77
707 714 4.614036 CCCAACACCCCCGGCTTT 62.614 66.667 0.00 0.00 0.00 3.51
713 720 4.653888 CACCGTCCCAACACCCCC 62.654 72.222 0.00 0.00 0.00 5.40
714 721 2.814913 GATCACCGTCCCAACACCCC 62.815 65.000 0.00 0.00 0.00 4.95
715 722 1.376812 GATCACCGTCCCAACACCC 60.377 63.158 0.00 0.00 0.00 4.61
716 723 1.740296 CGATCACCGTCCCAACACC 60.740 63.158 0.00 0.00 0.00 4.16
717 724 1.740296 CCGATCACCGTCCCAACAC 60.740 63.158 0.00 0.00 36.31 3.32
718 725 2.211410 ACCGATCACCGTCCCAACA 61.211 57.895 0.00 0.00 36.31 3.33
719 726 1.740296 CACCGATCACCGTCCCAAC 60.740 63.158 0.00 0.00 36.31 3.77
720 727 1.261938 ATCACCGATCACCGTCCCAA 61.262 55.000 0.00 0.00 36.31 4.12
721 728 1.672854 GATCACCGATCACCGTCCCA 61.673 60.000 0.00 0.00 38.77 4.37
722 729 1.067582 GATCACCGATCACCGTCCC 59.932 63.158 0.00 0.00 38.77 4.46
723 730 1.299165 CGATCACCGATCACCGTCC 60.299 63.158 4.95 0.00 38.84 4.79
724 731 1.944676 GCGATCACCGATCACCGTC 60.945 63.158 4.95 0.00 38.84 4.79
725 732 2.104331 GCGATCACCGATCACCGT 59.896 61.111 4.95 0.00 38.84 4.83
726 733 3.024609 CGCGATCACCGATCACCG 61.025 66.667 0.00 2.99 38.84 4.94
727 734 2.658593 CCGCGATCACCGATCACC 60.659 66.667 8.23 0.00 38.84 4.02
728 735 2.658593 CCCGCGATCACCGATCAC 60.659 66.667 8.23 0.00 38.84 3.06
729 736 2.831284 TCCCGCGATCACCGATCA 60.831 61.111 8.23 0.00 38.84 2.92
730 737 2.354773 GTCCCGCGATCACCGATC 60.355 66.667 8.23 0.00 41.76 3.69
731 738 3.912907 GGTCCCGCGATCACCGAT 61.913 66.667 8.23 0.00 41.76 4.18
765 772 1.299850 GTTGGGAAAAGCACGTGGC 60.300 57.895 18.88 9.78 45.30 5.01
766 773 1.008995 CGTTGGGAAAAGCACGTGG 60.009 57.895 18.88 0.00 0.00 4.94
767 774 1.008995 CCGTTGGGAAAAGCACGTG 60.009 57.895 12.28 12.28 34.06 4.49
768 775 1.153127 TCCGTTGGGAAAAGCACGT 60.153 52.632 0.00 0.00 40.15 4.49
769 776 0.882927 TCTCCGTTGGGAAAAGCACG 60.883 55.000 0.00 0.00 43.27 5.34
770 777 1.266989 CTTCTCCGTTGGGAAAAGCAC 59.733 52.381 0.00 0.00 43.27 4.40
771 778 1.133915 ACTTCTCCGTTGGGAAAAGCA 60.134 47.619 0.00 0.00 43.07 3.91
772 779 1.605753 ACTTCTCCGTTGGGAAAAGC 58.394 50.000 0.00 0.00 43.07 3.51
773 780 2.287608 GCAACTTCTCCGTTGGGAAAAG 60.288 50.000 5.90 0.00 44.54 2.27
774 781 1.679153 GCAACTTCTCCGTTGGGAAAA 59.321 47.619 5.90 0.00 43.27 2.29
775 782 1.314730 GCAACTTCTCCGTTGGGAAA 58.685 50.000 5.90 0.00 43.27 3.13
776 783 3.015516 GCAACTTCTCCGTTGGGAA 57.984 52.632 5.90 0.00 43.27 3.97
777 784 4.792087 GCAACTTCTCCGTTGGGA 57.208 55.556 5.90 0.00 43.37 4.37
778 785 3.253955 CGCAACTTCTCCGTTGGG 58.746 61.111 6.38 6.38 46.50 4.12
779 786 0.512952 CTTCGCAACTTCTCCGTTGG 59.487 55.000 5.90 0.00 43.37 3.77
780 787 0.512952 CCTTCGCAACTTCTCCGTTG 59.487 55.000 0.00 0.00 45.35 4.10
781 788 0.391597 TCCTTCGCAACTTCTCCGTT 59.608 50.000 0.00 0.00 0.00 4.44
782 789 0.038159 CTCCTTCGCAACTTCTCCGT 60.038 55.000 0.00 0.00 0.00 4.69
783 790 0.038159 ACTCCTTCGCAACTTCTCCG 60.038 55.000 0.00 0.00 0.00 4.63
784 791 2.231721 ACTACTCCTTCGCAACTTCTCC 59.768 50.000 0.00 0.00 0.00 3.71
785 792 3.246619 CACTACTCCTTCGCAACTTCTC 58.753 50.000 0.00 0.00 0.00 2.87
786 793 2.610727 GCACTACTCCTTCGCAACTTCT 60.611 50.000 0.00 0.00 0.00 2.85
787 794 1.727335 GCACTACTCCTTCGCAACTTC 59.273 52.381 0.00 0.00 0.00 3.01
788 795 1.070134 TGCACTACTCCTTCGCAACTT 59.930 47.619 0.00 0.00 0.00 2.66
789 796 0.679505 TGCACTACTCCTTCGCAACT 59.320 50.000 0.00 0.00 0.00 3.16
790 797 1.461127 CTTGCACTACTCCTTCGCAAC 59.539 52.381 0.00 0.00 37.64 4.17
791 798 1.608025 CCTTGCACTACTCCTTCGCAA 60.608 52.381 0.00 0.00 40.08 4.85
792 799 0.037326 CCTTGCACTACTCCTTCGCA 60.037 55.000 0.00 0.00 0.00 5.10
793 800 0.741221 CCCTTGCACTACTCCTTCGC 60.741 60.000 0.00 0.00 0.00 4.70
794 801 0.895530 TCCCTTGCACTACTCCTTCG 59.104 55.000 0.00 0.00 0.00 3.79
795 802 2.501723 TGATCCCTTGCACTACTCCTTC 59.498 50.000 0.00 0.00 0.00 3.46
796 803 2.551270 TGATCCCTTGCACTACTCCTT 58.449 47.619 0.00 0.00 0.00 3.36
797 804 2.254152 TGATCCCTTGCACTACTCCT 57.746 50.000 0.00 0.00 0.00 3.69
798 805 3.055094 TCTTTGATCCCTTGCACTACTCC 60.055 47.826 0.00 0.00 0.00 3.85
799 806 4.207891 TCTTTGATCCCTTGCACTACTC 57.792 45.455 0.00 0.00 0.00 2.59
800 807 4.640771 TTCTTTGATCCCTTGCACTACT 57.359 40.909 0.00 0.00 0.00 2.57
801 808 5.705609 TTTTCTTTGATCCCTTGCACTAC 57.294 39.130 0.00 0.00 0.00 2.73
802 809 5.278266 CGTTTTTCTTTGATCCCTTGCACTA 60.278 40.000 0.00 0.00 0.00 2.74
803 810 4.499696 CGTTTTTCTTTGATCCCTTGCACT 60.500 41.667 0.00 0.00 0.00 4.40
804 811 3.735746 CGTTTTTCTTTGATCCCTTGCAC 59.264 43.478 0.00 0.00 0.00 4.57
805 812 3.243704 CCGTTTTTCTTTGATCCCTTGCA 60.244 43.478 0.00 0.00 0.00 4.08
806 813 3.317150 CCGTTTTTCTTTGATCCCTTGC 58.683 45.455 0.00 0.00 0.00 4.01
807 814 3.243704 TGCCGTTTTTCTTTGATCCCTTG 60.244 43.478 0.00 0.00 0.00 3.61
808 815 2.962421 TGCCGTTTTTCTTTGATCCCTT 59.038 40.909 0.00 0.00 0.00 3.95
809 816 2.558359 CTGCCGTTTTTCTTTGATCCCT 59.442 45.455 0.00 0.00 0.00 4.20
810 817 2.556622 TCTGCCGTTTTTCTTTGATCCC 59.443 45.455 0.00 0.00 0.00 3.85
811 818 3.502211 TCTCTGCCGTTTTTCTTTGATCC 59.498 43.478 0.00 0.00 0.00 3.36
812 819 4.749245 TCTCTGCCGTTTTTCTTTGATC 57.251 40.909 0.00 0.00 0.00 2.92
813 820 5.514274 TTTCTCTGCCGTTTTTCTTTGAT 57.486 34.783 0.00 0.00 0.00 2.57
814 821 4.974368 TTTCTCTGCCGTTTTTCTTTGA 57.026 36.364 0.00 0.00 0.00 2.69
815 822 5.004726 CAGTTTTCTCTGCCGTTTTTCTTTG 59.995 40.000 0.00 0.00 0.00 2.77
816 823 5.102313 CAGTTTTCTCTGCCGTTTTTCTTT 58.898 37.500 0.00 0.00 0.00 2.52
817 824 4.398044 TCAGTTTTCTCTGCCGTTTTTCTT 59.602 37.500 0.00 0.00 35.63 2.52
818 825 3.945285 TCAGTTTTCTCTGCCGTTTTTCT 59.055 39.130 0.00 0.00 35.63 2.52
819 826 4.287238 TCAGTTTTCTCTGCCGTTTTTC 57.713 40.909 0.00 0.00 35.63 2.29
820 827 4.440112 CCTTCAGTTTTCTCTGCCGTTTTT 60.440 41.667 0.00 0.00 35.63 1.94
821 828 3.066760 CCTTCAGTTTTCTCTGCCGTTTT 59.933 43.478 0.00 0.00 35.63 2.43
822 829 2.618709 CCTTCAGTTTTCTCTGCCGTTT 59.381 45.455 0.00 0.00 35.63 3.60
823 830 2.222027 CCTTCAGTTTTCTCTGCCGTT 58.778 47.619 0.00 0.00 35.63 4.44
824 831 1.884235 CCTTCAGTTTTCTCTGCCGT 58.116 50.000 0.00 0.00 35.63 5.68
825 832 0.519077 GCCTTCAGTTTTCTCTGCCG 59.481 55.000 0.00 0.00 35.63 5.69
826 833 1.268079 GTGCCTTCAGTTTTCTCTGCC 59.732 52.381 0.00 0.00 35.63 4.85
827 834 1.268079 GGTGCCTTCAGTTTTCTCTGC 59.732 52.381 0.00 0.00 35.63 4.26
828 835 1.882623 GGGTGCCTTCAGTTTTCTCTG 59.117 52.381 0.00 0.00 36.85 3.35
829 836 1.494721 TGGGTGCCTTCAGTTTTCTCT 59.505 47.619 0.00 0.00 0.00 3.10
830 837 1.882623 CTGGGTGCCTTCAGTTTTCTC 59.117 52.381 0.00 0.00 0.00 2.87
831 838 1.986882 CTGGGTGCCTTCAGTTTTCT 58.013 50.000 0.00 0.00 0.00 2.52
832 839 0.315251 GCTGGGTGCCTTCAGTTTTC 59.685 55.000 0.00 0.00 35.15 2.29
833 840 1.455383 CGCTGGGTGCCTTCAGTTTT 61.455 55.000 0.00 0.00 38.78 2.43
834 841 1.898574 CGCTGGGTGCCTTCAGTTT 60.899 57.895 0.00 0.00 38.78 2.66
835 842 2.129555 ATCGCTGGGTGCCTTCAGTT 62.130 55.000 0.00 0.00 38.78 3.16
836 843 2.129555 AATCGCTGGGTGCCTTCAGT 62.130 55.000 0.00 0.00 38.78 3.41
837 844 0.107703 TAATCGCTGGGTGCCTTCAG 60.108 55.000 0.00 0.00 38.78 3.02
838 845 0.326595 TTAATCGCTGGGTGCCTTCA 59.673 50.000 0.00 0.00 38.78 3.02
839 846 1.604278 GATTAATCGCTGGGTGCCTTC 59.396 52.381 0.00 0.00 38.78 3.46
840 847 1.064758 TGATTAATCGCTGGGTGCCTT 60.065 47.619 10.80 0.00 38.78 4.35
841 848 0.546122 TGATTAATCGCTGGGTGCCT 59.454 50.000 10.80 0.00 38.78 4.75
842 849 1.334869 CTTGATTAATCGCTGGGTGCC 59.665 52.381 10.80 0.00 38.78 5.01
843 850 2.288666 TCTTGATTAATCGCTGGGTGC 58.711 47.619 10.80 0.00 38.57 5.01
876 883 3.052455 TGGAGTTTCTTCTTGCGCATA 57.948 42.857 12.75 0.00 0.00 3.14
913 934 1.383803 AGGAGCAGGGGATCAGGAC 60.384 63.158 0.00 0.00 0.00 3.85
930 951 5.350504 ACTGTATGTTGGATCCTTCTGAG 57.649 43.478 14.23 3.07 0.00 3.35
1051 1072 1.673337 TCGACGCCGAGAAGAAGGA 60.673 57.895 0.00 0.00 40.30 3.36
1052 1073 1.514443 GTCGACGCCGAGAAGAAGG 60.514 63.158 0.00 0.00 46.52 3.46
1192 1225 3.003763 GAGGGACGCCTTGAGGGT 61.004 66.667 0.00 0.00 45.91 4.34
1234 1274 3.692406 GGAGTGGAGGCGGTCGTT 61.692 66.667 0.00 0.00 0.00 3.85
1254 1294 3.083997 GGGAGCCCGGACATGACT 61.084 66.667 0.73 0.00 0.00 3.41
1335 1375 2.102357 CTCCCGGTGTCGATGACG 59.898 66.667 0.00 0.00 39.00 4.35
1769 1809 2.413765 CGAAGGCGAGGTAGGAGC 59.586 66.667 0.00 0.00 40.82 4.70
1805 1845 4.947147 GGGTGAAGGCCGTGCACA 62.947 66.667 18.64 7.03 34.33 4.57
1896 1936 4.097361 GAGAAGCCCCCGGTGACC 62.097 72.222 0.00 0.00 0.00 4.02
1908 1948 1.449956 GAGGCTGCAGCTGGAGAAG 60.450 63.158 36.18 13.88 41.70 2.85
1913 1953 2.969162 AAGGAGAGGCTGCAGCTGG 61.969 63.158 35.82 1.85 41.70 4.85
1919 1959 2.270527 GGTCCAAGGAGAGGCTGC 59.729 66.667 0.00 0.00 0.00 5.25
1957 1997 4.394712 GCCCGAGTCCACCACCAG 62.395 72.222 0.00 0.00 0.00 4.00
2076 2116 2.837280 CACGCGTCGAACACTGAC 59.163 61.111 9.86 0.00 0.00 3.51
2079 2119 1.728426 GTAGCACGCGTCGAACACT 60.728 57.895 9.86 2.56 0.00 3.55
2171 2211 2.429610 TGCTCGGGTATGAAGTAGTTCC 59.570 50.000 7.84 0.00 0.00 3.62
2385 2425 2.058913 AACAACAATTTAAGGCGGCG 57.941 45.000 0.51 0.51 0.00 6.46
2388 2428 5.047188 ACCTGAAAACAACAATTTAAGGCG 58.953 37.500 2.87 0.00 32.46 5.52
2392 2432 9.877178 ATGTAACACCTGAAAACAACAATTTAA 57.123 25.926 0.00 0.00 0.00 1.52
2420 2460 6.152323 TGGTTTCTCCACTGATGTAGTAGTAC 59.848 42.308 0.37 0.37 41.93 2.73
2452 2492 2.198827 ATGGAAATTCAGTGCGACCA 57.801 45.000 0.00 0.00 0.00 4.02
2455 2495 4.323417 ACTGTTATGGAAATTCAGTGCGA 58.677 39.130 0.00 0.00 37.85 5.10
2470 2510 1.000717 GCGTGGGTTTGCAACTGTTAT 60.001 47.619 0.00 0.00 0.00 1.89
2473 2513 1.724582 GAGCGTGGGTTTGCAACTGT 61.725 55.000 0.00 0.00 0.00 3.55
2597 2642 9.689501 AAGTAGACCAAATTTTATAATCCGGAA 57.310 29.630 9.01 0.00 0.00 4.30
2653 2698 7.661968 ACCCTCAAAAAGAGCTTTAATTCTTC 58.338 34.615 0.00 0.00 43.31 2.87
2668 2713 2.746279 TTCAGGCAGACCCTCAAAAA 57.254 45.000 0.00 0.00 44.09 1.94
2764 2809 0.868406 CGGCGAAAATCTGGCTATCC 59.132 55.000 0.00 0.00 0.00 2.59
2779 2824 1.714794 AAAGATCAGTTGACTCGGCG 58.285 50.000 0.00 0.00 0.00 6.46
2806 2852 2.703416 CTCTGCAGTATGTTGAGGCAA 58.297 47.619 14.67 0.00 39.31 4.52
2807 2853 1.676916 GCTCTGCAGTATGTTGAGGCA 60.677 52.381 14.67 0.00 37.78 4.75
2810 2856 2.095532 GCTTGCTCTGCAGTATGTTGAG 59.904 50.000 14.67 2.86 40.61 3.02
3006 3052 1.599071 CTGAGCTGCTTTGTTTCGACA 59.401 47.619 2.53 0.00 0.00 4.35
3008 3054 2.238942 TCTGAGCTGCTTTGTTTCGA 57.761 45.000 2.53 0.00 0.00 3.71
3009 3055 2.350197 CCTTCTGAGCTGCTTTGTTTCG 60.350 50.000 2.53 0.00 0.00 3.46
3022 3068 2.365617 ACATATGTACGCCCCTTCTGAG 59.634 50.000 6.56 0.00 0.00 3.35
3023 3069 2.394632 ACATATGTACGCCCCTTCTGA 58.605 47.619 6.56 0.00 0.00 3.27
3024 3070 2.910688 ACATATGTACGCCCCTTCTG 57.089 50.000 6.56 0.00 0.00 3.02
3025 3071 3.707611 TGTTACATATGTACGCCCCTTCT 59.292 43.478 15.20 0.00 0.00 2.85
3026 3072 3.805971 GTGTTACATATGTACGCCCCTTC 59.194 47.826 15.20 0.82 0.00 3.46
3027 3073 3.738899 CGTGTTACATATGTACGCCCCTT 60.739 47.826 15.20 0.00 0.00 3.95
3028 3074 2.223876 CGTGTTACATATGTACGCCCCT 60.224 50.000 15.20 0.00 0.00 4.79
3029 3075 2.129607 CGTGTTACATATGTACGCCCC 58.870 52.381 15.20 2.63 0.00 5.80
3030 3076 1.523934 GCGTGTTACATATGTACGCCC 59.476 52.381 30.75 15.79 37.48 6.13
3031 3077 2.916735 GCGTGTTACATATGTACGCC 57.083 50.000 30.75 19.05 37.48 5.68
3032 3078 2.466846 AGGCGTGTTACATATGTACGC 58.533 47.619 32.04 32.04 40.49 4.42
3033 3079 3.047796 GGAGGCGTGTTACATATGTACG 58.952 50.000 20.28 20.28 0.00 3.67
3034 3080 4.049546 TGGAGGCGTGTTACATATGTAC 57.950 45.455 15.20 10.87 0.00 2.90
3035 3081 4.627058 CATGGAGGCGTGTTACATATGTA 58.373 43.478 11.62 11.62 0.00 2.29
3036 3082 3.466836 CATGGAGGCGTGTTACATATGT 58.533 45.455 13.93 13.93 0.00 2.29
3037 3083 2.224079 GCATGGAGGCGTGTTACATATG 59.776 50.000 0.00 0.00 0.00 1.78
3038 3084 2.158827 TGCATGGAGGCGTGTTACATAT 60.159 45.455 0.00 0.00 36.28 1.78
3039 3085 1.208293 TGCATGGAGGCGTGTTACATA 59.792 47.619 0.00 0.00 36.28 2.29
3040 3086 0.035534 TGCATGGAGGCGTGTTACAT 60.036 50.000 0.00 0.00 36.28 2.29
3041 3087 0.250510 TTGCATGGAGGCGTGTTACA 60.251 50.000 0.00 0.00 36.28 2.41
3042 3088 0.168128 GTTGCATGGAGGCGTGTTAC 59.832 55.000 0.00 0.00 36.28 2.50
3043 3089 0.250510 TGTTGCATGGAGGCGTGTTA 60.251 50.000 0.00 0.00 36.28 2.41
3044 3090 1.528076 TGTTGCATGGAGGCGTGTT 60.528 52.632 0.00 0.00 36.28 3.32
3045 3091 2.112928 TGTTGCATGGAGGCGTGT 59.887 55.556 0.00 0.00 36.28 4.49
3046 3092 2.562912 GTGTTGCATGGAGGCGTG 59.437 61.111 0.00 0.00 36.28 5.34
3047 3093 2.672996 GGTGTTGCATGGAGGCGT 60.673 61.111 0.00 0.00 36.28 5.68
3048 3094 2.360350 AGGTGTTGCATGGAGGCG 60.360 61.111 0.00 0.00 36.28 5.52
3049 3095 0.682209 ATGAGGTGTTGCATGGAGGC 60.682 55.000 0.00 0.00 0.00 4.70
3050 3096 2.092753 ACTATGAGGTGTTGCATGGAGG 60.093 50.000 0.00 0.00 0.00 4.30
3051 3097 3.272574 ACTATGAGGTGTTGCATGGAG 57.727 47.619 0.00 0.00 0.00 3.86
3052 3098 3.244875 ACAACTATGAGGTGTTGCATGGA 60.245 43.478 5.86 0.00 45.36 3.41
3053 3099 3.084039 ACAACTATGAGGTGTTGCATGG 58.916 45.455 5.86 0.00 45.36 3.66
3054 3100 6.093909 TGAATACAACTATGAGGTGTTGCATG 59.906 38.462 1.90 0.00 45.36 4.06
3055 3101 6.179756 TGAATACAACTATGAGGTGTTGCAT 58.820 36.000 1.90 0.00 45.36 3.96
3056 3102 5.555966 TGAATACAACTATGAGGTGTTGCA 58.444 37.500 1.90 0.00 45.36 4.08
3057 3103 5.874810 TCTGAATACAACTATGAGGTGTTGC 59.125 40.000 1.90 0.00 45.36 4.17
3058 3104 7.905604 TTCTGAATACAACTATGAGGTGTTG 57.094 36.000 1.90 0.00 45.36 3.33
3059 3105 9.520515 AATTTCTGAATACAACTATGAGGTGTT 57.479 29.630 1.90 0.00 45.36 3.32
3061 3107 9.166173 TGAATTTCTGAATACAACTATGAGGTG 57.834 33.333 0.00 0.00 39.30 4.00
3062 3108 9.388506 CTGAATTTCTGAATACAACTATGAGGT 57.611 33.333 0.00 0.00 0.00 3.85
3063 3109 8.341173 GCTGAATTTCTGAATACAACTATGAGG 58.659 37.037 7.40 0.00 0.00 3.86
3064 3110 8.341173 GGCTGAATTTCTGAATACAACTATGAG 58.659 37.037 7.40 0.00 0.00 2.90
3065 3111 7.828717 TGGCTGAATTTCTGAATACAACTATGA 59.171 33.333 7.40 0.00 0.00 2.15
3066 3112 7.988737 TGGCTGAATTTCTGAATACAACTATG 58.011 34.615 7.40 0.00 0.00 2.23
3067 3113 8.049117 TCTGGCTGAATTTCTGAATACAACTAT 58.951 33.333 7.40 0.00 0.00 2.12
3068 3114 7.394016 TCTGGCTGAATTTCTGAATACAACTA 58.606 34.615 7.40 0.00 0.00 2.24
3069 3115 6.240894 TCTGGCTGAATTTCTGAATACAACT 58.759 36.000 7.40 0.00 0.00 3.16
3070 3116 6.404074 CCTCTGGCTGAATTTCTGAATACAAC 60.404 42.308 7.40 0.00 0.00 3.32
3071 3117 5.649395 CCTCTGGCTGAATTTCTGAATACAA 59.351 40.000 7.40 0.00 0.00 2.41
3072 3118 5.188434 CCTCTGGCTGAATTTCTGAATACA 58.812 41.667 7.40 0.63 0.00 2.29
3073 3119 4.578105 CCCTCTGGCTGAATTTCTGAATAC 59.422 45.833 7.40 0.00 0.00 1.89
3074 3120 4.474651 TCCCTCTGGCTGAATTTCTGAATA 59.525 41.667 7.40 0.00 0.00 1.75
3075 3121 3.267812 TCCCTCTGGCTGAATTTCTGAAT 59.732 43.478 7.40 0.00 0.00 2.57
3076 3122 2.644299 TCCCTCTGGCTGAATTTCTGAA 59.356 45.455 7.40 0.00 0.00 3.02
3077 3123 2.269023 TCCCTCTGGCTGAATTTCTGA 58.731 47.619 7.40 0.00 0.00 3.27
3078 3124 2.795231 TCCCTCTGGCTGAATTTCTG 57.205 50.000 0.00 0.00 0.00 3.02
3079 3125 5.196695 GTTATTCCCTCTGGCTGAATTTCT 58.803 41.667 0.00 0.00 31.55 2.52
3080 3126 4.949856 TGTTATTCCCTCTGGCTGAATTTC 59.050 41.667 0.00 0.00 31.55 2.17
3081 3127 4.706962 GTGTTATTCCCTCTGGCTGAATTT 59.293 41.667 0.00 0.00 31.55 1.82
3082 3128 4.018050 AGTGTTATTCCCTCTGGCTGAATT 60.018 41.667 0.00 0.00 31.55 2.17
3083 3129 3.525199 AGTGTTATTCCCTCTGGCTGAAT 59.475 43.478 0.00 0.00 33.54 2.57
3098 3144 9.959721 ACTGGACATCTATTTTTACAGTGTTAT 57.040 29.630 0.00 0.00 36.66 1.89
3099 3145 9.214957 CACTGGACATCTATTTTTACAGTGTTA 57.785 33.333 0.00 0.00 45.57 2.41
3139 3197 8.380099 AGTTCCATACATAAGAAGGTAACAACA 58.620 33.333 0.00 0.00 41.41 3.33
3159 3217 4.641396 CACACCAGTTTCATCTAGTTCCA 58.359 43.478 0.00 0.00 0.00 3.53
3173 3231 1.202927 AGGCAATAACAGCACACCAGT 60.203 47.619 0.00 0.00 0.00 4.00
3177 3235 0.527565 CCCAGGCAATAACAGCACAC 59.472 55.000 0.00 0.00 0.00 3.82
3180 3238 0.403655 TGACCCAGGCAATAACAGCA 59.596 50.000 0.00 0.00 0.00 4.41
3215 3273 3.496130 CCAGCAGAAAGTGTAGACAGTTG 59.504 47.826 3.54 0.00 39.29 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.