Multiple sequence alignment - TraesCS3B01G318900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G318900 chr3B 100.000 2528 0 0 1 2528 513710405 513707878 0.000000e+00 4669
1 TraesCS3B01G318900 chr3B 94.915 295 15 0 2234 2528 670577325 670577031 1.770000e-126 462
2 TraesCS3B01G318900 chr3B 94.576 295 16 0 2234 2528 513695399 513695105 8.240000e-125 457
3 TraesCS3B01G318900 chr3B 94.257 296 16 1 2233 2528 670604817 670604523 3.830000e-123 451
4 TraesCS3B01G318900 chr3A 89.583 1536 120 23 570 2086 513902609 513901095 0.000000e+00 1914
5 TraesCS3B01G318900 chr3A 96.024 327 10 2 1 326 513902945 513902621 1.720000e-146 529
6 TraesCS3B01G318900 chr3A 80.679 383 38 13 1786 2155 108489670 108490029 5.360000e-67 265
7 TraesCS3B01G318900 chr3D 91.944 1204 63 14 559 1753 394154721 394153543 0.000000e+00 1655
8 TraesCS3B01G318900 chr3D 83.673 392 44 9 1776 2155 474998158 474997775 4.000000e-93 351
9 TraesCS3B01G318900 chr3D 91.775 231 3 6 121 335 394154934 394154704 8.780000e-80 307
10 TraesCS3B01G318900 chr3D 93.277 119 8 0 1 119 394155179 394155061 2.580000e-40 176
11 TraesCS3B01G318900 chr4B 96.907 291 9 0 2234 2524 94485278 94484988 2.920000e-134 488
12 TraesCS3B01G318900 chr4B 94.178 292 17 0 2233 2524 94498035 94497744 1.780000e-121 446
13 TraesCS3B01G318900 chr5B 95.533 291 13 0 2234 2524 560397546 560397836 1.370000e-127 466
14 TraesCS3B01G318900 chr7B 93.898 295 18 0 2234 2528 344152763 344153057 1.780000e-121 446
15 TraesCS3B01G318900 chr7B 93.581 296 19 0 2233 2528 344126891 344127186 2.310000e-120 442
16 TraesCS3B01G318900 chr7B 78.889 360 54 12 1777 2134 701154634 701154973 9.100000e-55 224
17 TraesCS3B01G318900 chr6B 93.898 295 17 1 2234 2528 692061308 692061601 6.420000e-121 444
18 TraesCS3B01G318900 chr2A 96.070 229 7 1 333 559 752069861 752069633 3.070000e-99 372
19 TraesCS3B01G318900 chr2B 81.316 380 55 10 1777 2151 139806300 139806668 6.840000e-76 294
20 TraesCS3B01G318900 chr7D 80.879 387 46 17 1777 2153 8434330 8434698 1.920000e-71 279
21 TraesCS3B01G318900 chr7D 79.040 396 51 13 1778 2154 452972805 452972423 2.510000e-60 243
22 TraesCS3B01G318900 chr7D 87.179 156 12 7 1776 1930 230906146 230905998 1.200000e-38 171
23 TraesCS3B01G318900 chr5A 80.203 394 51 20 1776 2157 546203944 546203566 1.150000e-68 270
24 TraesCS3B01G318900 chr5A 80.208 384 53 16 1776 2148 607195127 607195498 1.490000e-67 267
25 TraesCS3B01G318900 chr2D 79.784 371 66 5 1777 2145 87248658 87249021 6.940000e-66 261
26 TraesCS3B01G318900 chr2D 77.895 380 67 10 1777 2145 627038767 627039140 1.180000e-53 220
27 TraesCS3B01G318900 chr7A 79.133 369 61 13 1783 2148 55425429 55425074 9.040000e-60 241
28 TraesCS3B01G318900 chr5D 79.739 306 39 12 1859 2153 545697082 545696789 1.530000e-47 200
29 TraesCS3B01G318900 chr1A 77.000 300 50 12 1858 2145 313267003 313266711 1.210000e-33 154
30 TraesCS3B01G318900 chr6D 74.599 374 70 10 1783 2145 118973055 118973414 9.430000e-30 141
31 TraesCS3B01G318900 chr4A 74.151 383 78 14 1777 2145 651801936 651802311 3.390000e-29 139
32 TraesCS3B01G318900 chr1B 81.287 171 26 4 1783 1950 3216340 3216173 1.580000e-27 134
33 TraesCS3B01G318900 chrUn 80.105 191 23 9 1964 2145 134300618 134300802 7.340000e-26 128
34 TraesCS3B01G318900 chr4D 78.505 214 32 8 1776 1986 465024493 465024695 7.340000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G318900 chr3B 513707878 513710405 2527 True 4669.000000 4669 100.0000 1 2528 1 chr3B.!!$R2 2527
1 TraesCS3B01G318900 chr3A 513901095 513902945 1850 True 1221.500000 1914 92.8035 1 2086 2 chr3A.!!$R1 2085
2 TraesCS3B01G318900 chr3D 394153543 394155179 1636 True 712.666667 1655 92.3320 1 1753 3 chr3D.!!$R2 1752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 756 0.171455 CTGAGAGGCCTACGACACAC 59.829 60.0 4.42 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2389 0.036765 GACACAATACTCCCGTGCCA 60.037 55.0 0.0 0.0 33.89 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.430451 GTTAGCCCGACAATAGAATCATTTG 58.570 40.000 0.00 0.00 0.00 2.32
98 99 2.576191 AGCCTGGATAAAAGGTGCACTA 59.424 45.455 17.98 0.82 37.13 2.74
119 120 7.923436 CACTAACCAGTCACTTGCAAAATTGC 61.923 42.308 11.11 11.11 43.31 3.56
157 284 5.994054 GGACATCACATCAGCACATTAGTAT 59.006 40.000 0.00 0.00 0.00 2.12
171 298 6.334989 CACATTAGTATCCGGTGTTGAACTA 58.665 40.000 0.00 0.00 0.00 2.24
326 469 0.961019 GTGCCACATCAAAAGCTGGA 59.039 50.000 0.00 0.00 0.00 3.86
327 470 0.961019 TGCCACATCAAAAGCTGGAC 59.039 50.000 0.00 0.00 0.00 4.02
328 471 1.251251 GCCACATCAAAAGCTGGACT 58.749 50.000 0.00 0.00 0.00 3.85
330 473 2.421424 GCCACATCAAAAGCTGGACTAG 59.579 50.000 0.00 0.00 0.00 2.57
344 487 5.543507 CTGGACTAGCTCATCTGGTTAAT 57.456 43.478 0.00 0.00 36.57 1.40
345 488 5.282055 TGGACTAGCTCATCTGGTTAATG 57.718 43.478 0.00 0.00 36.57 1.90
346 489 4.962362 TGGACTAGCTCATCTGGTTAATGA 59.038 41.667 0.00 0.00 36.57 2.57
369 512 5.975113 AGATAAAGGATCTCATGAGGGAGA 58.025 41.667 22.42 3.75 41.37 3.71
370 513 6.018469 AGATAAAGGATCTCATGAGGGAGAG 58.982 44.000 22.42 0.00 46.36 3.20
371 514 2.700353 AGGATCTCATGAGGGAGAGG 57.300 55.000 22.42 0.00 46.36 3.69
372 515 1.149711 AGGATCTCATGAGGGAGAGGG 59.850 57.143 22.42 0.00 46.36 4.30
373 516 1.148867 GGATCTCATGAGGGAGAGGGA 59.851 57.143 22.42 1.02 46.36 4.20
374 517 2.528564 GATCTCATGAGGGAGAGGGAG 58.471 57.143 22.42 0.00 46.36 4.30
375 518 1.313889 TCTCATGAGGGAGAGGGAGT 58.686 55.000 22.42 0.00 38.95 3.85
376 519 1.648568 TCTCATGAGGGAGAGGGAGTT 59.351 52.381 22.42 0.00 38.95 3.01
377 520 2.045047 TCTCATGAGGGAGAGGGAGTTT 59.955 50.000 22.42 0.00 38.95 2.66
378 521 2.843113 CTCATGAGGGAGAGGGAGTTTT 59.157 50.000 15.38 0.00 37.05 2.43
379 522 3.260205 TCATGAGGGAGAGGGAGTTTTT 58.740 45.455 0.00 0.00 0.00 1.94
380 523 3.009473 TCATGAGGGAGAGGGAGTTTTTG 59.991 47.826 0.00 0.00 0.00 2.44
381 524 2.418669 TGAGGGAGAGGGAGTTTTTGT 58.581 47.619 0.00 0.00 0.00 2.83
382 525 2.106511 TGAGGGAGAGGGAGTTTTTGTG 59.893 50.000 0.00 0.00 0.00 3.33
383 526 2.106684 GAGGGAGAGGGAGTTTTTGTGT 59.893 50.000 0.00 0.00 0.00 3.72
384 527 2.106684 AGGGAGAGGGAGTTTTTGTGTC 59.893 50.000 0.00 0.00 0.00 3.67
385 528 2.106684 GGGAGAGGGAGTTTTTGTGTCT 59.893 50.000 0.00 0.00 0.00 3.41
386 529 3.435169 GGGAGAGGGAGTTTTTGTGTCTT 60.435 47.826 0.00 0.00 0.00 3.01
387 530 3.815962 GGAGAGGGAGTTTTTGTGTCTTC 59.184 47.826 0.00 0.00 0.00 2.87
388 531 4.451900 GAGAGGGAGTTTTTGTGTCTTCA 58.548 43.478 0.00 0.00 0.00 3.02
389 532 5.053978 AGAGGGAGTTTTTGTGTCTTCAT 57.946 39.130 0.00 0.00 0.00 2.57
390 533 6.187727 AGAGGGAGTTTTTGTGTCTTCATA 57.812 37.500 0.00 0.00 0.00 2.15
391 534 6.784031 AGAGGGAGTTTTTGTGTCTTCATAT 58.216 36.000 0.00 0.00 0.00 1.78
392 535 7.234355 AGAGGGAGTTTTTGTGTCTTCATATT 58.766 34.615 0.00 0.00 0.00 1.28
393 536 8.383175 AGAGGGAGTTTTTGTGTCTTCATATTA 58.617 33.333 0.00 0.00 0.00 0.98
394 537 8.934023 AGGGAGTTTTTGTGTCTTCATATTAA 57.066 30.769 0.00 0.00 0.00 1.40
395 538 9.533831 AGGGAGTTTTTGTGTCTTCATATTAAT 57.466 29.630 0.00 0.00 0.00 1.40
396 539 9.788960 GGGAGTTTTTGTGTCTTCATATTAATC 57.211 33.333 0.00 0.00 0.00 1.75
397 540 9.490663 GGAGTTTTTGTGTCTTCATATTAATCG 57.509 33.333 0.00 0.00 0.00 3.34
402 545 9.502145 TTTTGTGTCTTCATATTAATCGAATGC 57.498 29.630 0.00 0.00 0.00 3.56
403 546 7.784633 TGTGTCTTCATATTAATCGAATGCA 57.215 32.000 0.00 0.00 0.00 3.96
404 547 7.854534 TGTGTCTTCATATTAATCGAATGCAG 58.145 34.615 0.00 0.00 0.00 4.41
405 548 7.710475 TGTGTCTTCATATTAATCGAATGCAGA 59.290 33.333 0.00 0.00 0.00 4.26
406 549 8.551205 GTGTCTTCATATTAATCGAATGCAGAA 58.449 33.333 0.00 0.00 27.36 3.02
407 550 9.276590 TGTCTTCATATTAATCGAATGCAGAAT 57.723 29.630 0.00 0.00 27.36 2.40
411 554 9.942850 TTCATATTAATCGAATGCAGAATAGGA 57.057 29.630 0.00 0.00 0.00 2.94
412 555 9.371136 TCATATTAATCGAATGCAGAATAGGAC 57.629 33.333 0.00 0.00 0.00 3.85
413 556 9.376075 CATATTAATCGAATGCAGAATAGGACT 57.624 33.333 0.00 0.00 0.00 3.85
414 557 7.664082 ATTAATCGAATGCAGAATAGGACTG 57.336 36.000 0.00 0.00 38.27 3.51
422 565 3.724508 CAGAATAGGACTGCAGATCGT 57.275 47.619 23.35 17.00 0.00 3.73
423 566 4.052159 CAGAATAGGACTGCAGATCGTT 57.948 45.455 23.35 11.59 0.00 3.85
424 567 4.437239 CAGAATAGGACTGCAGATCGTTT 58.563 43.478 23.35 8.16 0.00 3.60
425 568 5.592054 CAGAATAGGACTGCAGATCGTTTA 58.408 41.667 23.35 8.13 0.00 2.01
426 569 5.689514 CAGAATAGGACTGCAGATCGTTTAG 59.310 44.000 23.35 0.00 0.00 1.85
427 570 2.301577 AGGACTGCAGATCGTTTAGC 57.698 50.000 23.35 0.85 0.00 3.09
428 571 1.134670 AGGACTGCAGATCGTTTAGCC 60.135 52.381 23.35 6.93 0.00 3.93
429 572 1.134670 GGACTGCAGATCGTTTAGCCT 60.135 52.381 23.35 0.00 0.00 4.58
430 573 2.100916 GGACTGCAGATCGTTTAGCCTA 59.899 50.000 23.35 0.00 0.00 3.93
431 574 3.243907 GGACTGCAGATCGTTTAGCCTAT 60.244 47.826 23.35 0.00 0.00 2.57
432 575 4.372656 GACTGCAGATCGTTTAGCCTATT 58.627 43.478 23.35 0.00 0.00 1.73
433 576 4.770795 ACTGCAGATCGTTTAGCCTATTT 58.229 39.130 23.35 0.00 0.00 1.40
434 577 5.186198 ACTGCAGATCGTTTAGCCTATTTT 58.814 37.500 23.35 0.00 0.00 1.82
435 578 5.648092 ACTGCAGATCGTTTAGCCTATTTTT 59.352 36.000 23.35 0.00 0.00 1.94
436 579 6.119144 TGCAGATCGTTTAGCCTATTTTTC 57.881 37.500 0.00 0.00 0.00 2.29
437 580 5.645929 TGCAGATCGTTTAGCCTATTTTTCA 59.354 36.000 0.00 0.00 0.00 2.69
438 581 6.150307 TGCAGATCGTTTAGCCTATTTTTCAA 59.850 34.615 0.00 0.00 0.00 2.69
439 582 6.688813 GCAGATCGTTTAGCCTATTTTTCAAG 59.311 38.462 0.00 0.00 0.00 3.02
440 583 7.414098 GCAGATCGTTTAGCCTATTTTTCAAGA 60.414 37.037 0.00 0.00 0.00 3.02
441 584 8.450964 CAGATCGTTTAGCCTATTTTTCAAGAA 58.549 33.333 0.00 0.00 0.00 2.52
442 585 9.178758 AGATCGTTTAGCCTATTTTTCAAGAAT 57.821 29.630 0.00 0.00 0.00 2.40
443 586 9.226345 GATCGTTTAGCCTATTTTTCAAGAATG 57.774 33.333 0.00 0.00 0.00 2.67
444 587 8.330466 TCGTTTAGCCTATTTTTCAAGAATGA 57.670 30.769 0.00 0.00 0.00 2.57
445 588 8.788806 TCGTTTAGCCTATTTTTCAAGAATGAA 58.211 29.630 0.00 0.00 43.70 2.57
452 595 3.765349 TTCAAGAATGAAACGCCGC 57.235 47.368 0.00 0.00 42.47 6.53
453 596 0.947960 TTCAAGAATGAAACGCCGCA 59.052 45.000 0.00 0.00 42.47 5.69
454 597 0.237235 TCAAGAATGAAACGCCGCAC 59.763 50.000 0.00 0.00 30.99 5.34
455 598 0.729140 CAAGAATGAAACGCCGCACC 60.729 55.000 0.00 0.00 0.00 5.01
456 599 1.169661 AAGAATGAAACGCCGCACCA 61.170 50.000 0.00 0.00 0.00 4.17
457 600 1.169661 AGAATGAAACGCCGCACCAA 61.170 50.000 0.00 0.00 0.00 3.67
458 601 1.001745 GAATGAAACGCCGCACCAAC 61.002 55.000 0.00 0.00 0.00 3.77
459 602 1.452145 AATGAAACGCCGCACCAACT 61.452 50.000 0.00 0.00 0.00 3.16
460 603 1.452145 ATGAAACGCCGCACCAACTT 61.452 50.000 0.00 0.00 0.00 2.66
461 604 1.657181 GAAACGCCGCACCAACTTG 60.657 57.895 0.00 0.00 0.00 3.16
462 605 2.331019 GAAACGCCGCACCAACTTGT 62.331 55.000 0.00 0.00 0.00 3.16
463 606 2.606155 AAACGCCGCACCAACTTGTG 62.606 55.000 0.00 0.00 39.29 3.33
474 617 1.392589 CAACTTGTGGTTGCAGGAGT 58.607 50.000 0.00 0.00 46.89 3.85
475 618 1.334869 CAACTTGTGGTTGCAGGAGTC 59.665 52.381 0.00 0.00 46.89 3.36
476 619 0.179018 ACTTGTGGTTGCAGGAGTCC 60.179 55.000 0.00 0.00 0.00 3.85
477 620 1.227823 TTGTGGTTGCAGGAGTCCG 60.228 57.895 2.76 0.00 0.00 4.79
478 621 3.050275 GTGGTTGCAGGAGTCCGC 61.050 66.667 16.16 16.16 0.00 5.54
479 622 3.555324 TGGTTGCAGGAGTCCGCA 61.555 61.111 20.17 20.17 33.08 5.69
480 623 2.281484 GGTTGCAGGAGTCCGCAA 60.281 61.111 26.83 26.83 39.32 4.85
481 624 1.896660 GGTTGCAGGAGTCCGCAAA 60.897 57.895 29.98 18.08 41.56 3.68
482 625 1.244019 GGTTGCAGGAGTCCGCAAAT 61.244 55.000 29.98 2.83 41.56 2.32
483 626 1.448985 GTTGCAGGAGTCCGCAAATA 58.551 50.000 29.98 15.20 41.56 1.40
484 627 2.017049 GTTGCAGGAGTCCGCAAATAT 58.983 47.619 29.98 1.46 41.56 1.28
485 628 1.953559 TGCAGGAGTCCGCAAATATC 58.046 50.000 21.30 1.07 32.32 1.63
486 629 1.230324 GCAGGAGTCCGCAAATATCC 58.770 55.000 17.55 0.00 0.00 2.59
487 630 1.202698 GCAGGAGTCCGCAAATATCCT 60.203 52.381 17.55 0.00 41.08 3.24
488 631 2.918712 AGGAGTCCGCAAATATCCTG 57.081 50.000 2.76 0.00 38.95 3.86
489 632 1.417890 AGGAGTCCGCAAATATCCTGG 59.582 52.381 2.76 0.00 38.95 4.45
490 633 1.141053 GGAGTCCGCAAATATCCTGGT 59.859 52.381 0.00 0.00 0.00 4.00
491 634 2.421529 GGAGTCCGCAAATATCCTGGTT 60.422 50.000 0.00 0.00 0.00 3.67
492 635 3.181458 GGAGTCCGCAAATATCCTGGTTA 60.181 47.826 0.00 0.00 0.00 2.85
493 636 4.058817 GAGTCCGCAAATATCCTGGTTAG 58.941 47.826 0.00 0.00 0.00 2.34
494 637 2.548480 GTCCGCAAATATCCTGGTTAGC 59.452 50.000 0.00 0.00 0.00 3.09
495 638 2.438021 TCCGCAAATATCCTGGTTAGCT 59.562 45.455 0.00 0.00 0.00 3.32
496 639 3.118038 TCCGCAAATATCCTGGTTAGCTT 60.118 43.478 0.00 0.00 0.00 3.74
497 640 3.003689 CCGCAAATATCCTGGTTAGCTTG 59.996 47.826 0.00 0.06 0.00 4.01
498 641 3.548818 CGCAAATATCCTGGTTAGCTTGC 60.549 47.826 16.82 16.82 35.67 4.01
499 642 3.633986 GCAAATATCCTGGTTAGCTTGCT 59.366 43.478 18.27 0.00 36.02 3.91
500 643 4.498682 GCAAATATCCTGGTTAGCTTGCTG 60.499 45.833 18.27 0.00 36.02 4.41
501 644 3.498774 ATATCCTGGTTAGCTTGCTGG 57.501 47.619 5.26 0.00 0.00 4.85
502 645 0.394899 ATCCTGGTTAGCTTGCTGGC 60.395 55.000 5.26 0.00 0.00 4.85
503 646 1.303561 CCTGGTTAGCTTGCTGGCA 60.304 57.895 5.26 0.00 34.17 4.92
504 647 0.895100 CCTGGTTAGCTTGCTGGCAA 60.895 55.000 7.78 7.78 34.17 4.52
515 658 2.170738 GCTGGCAAGCGATTGTACA 58.829 52.632 15.72 13.18 40.27 2.90
516 659 0.521291 GCTGGCAAGCGATTGTACAA 59.479 50.000 15.72 11.41 40.27 2.41
517 660 1.729149 GCTGGCAAGCGATTGTACAAC 60.729 52.381 15.72 6.58 40.27 3.32
518 661 1.806542 CTGGCAAGCGATTGTACAACT 59.193 47.619 15.72 0.44 0.00 3.16
519 662 3.000041 CTGGCAAGCGATTGTACAACTA 59.000 45.455 15.72 0.00 0.00 2.24
520 663 3.605634 TGGCAAGCGATTGTACAACTAT 58.394 40.909 15.72 0.00 0.00 2.12
521 664 4.006989 TGGCAAGCGATTGTACAACTATT 58.993 39.130 15.72 1.03 0.00 1.73
522 665 4.094294 TGGCAAGCGATTGTACAACTATTC 59.906 41.667 15.72 3.59 0.00 1.75
523 666 4.495844 GGCAAGCGATTGTACAACTATTCC 60.496 45.833 15.72 3.21 0.00 3.01
524 667 4.332819 GCAAGCGATTGTACAACTATTCCT 59.667 41.667 15.72 1.90 0.00 3.36
525 668 5.163754 GCAAGCGATTGTACAACTATTCCTT 60.164 40.000 15.72 7.45 0.00 3.36
526 669 6.036735 GCAAGCGATTGTACAACTATTCCTTA 59.963 38.462 15.72 0.00 0.00 2.69
527 670 7.413657 GCAAGCGATTGTACAACTATTCCTTAA 60.414 37.037 15.72 0.00 0.00 1.85
528 671 8.612619 CAAGCGATTGTACAACTATTCCTTAAT 58.387 33.333 11.22 0.00 0.00 1.40
529 672 9.826574 AAGCGATTGTACAACTATTCCTTAATA 57.173 29.630 11.22 0.00 0.00 0.98
530 673 9.826574 AGCGATTGTACAACTATTCCTTAATAA 57.173 29.630 11.22 0.00 0.00 1.40
547 690 9.920946 TCCTTAATAATAAAGCTCCTTTGATGT 57.079 29.630 0.00 0.00 35.21 3.06
549 692 9.869844 CTTAATAATAAAGCTCCTTTGATGTCG 57.130 33.333 0.00 0.00 35.21 4.35
550 693 4.622701 AATAAAGCTCCTTTGATGTCGC 57.377 40.909 0.00 0.00 35.21 5.19
551 694 1.896220 AAAGCTCCTTTGATGTCGCA 58.104 45.000 0.00 0.00 31.98 5.10
552 695 1.896220 AAGCTCCTTTGATGTCGCAA 58.104 45.000 0.00 0.00 0.00 4.85
553 696 1.896220 AGCTCCTTTGATGTCGCAAA 58.104 45.000 0.00 0.00 36.43 3.68
554 697 2.229792 AGCTCCTTTGATGTCGCAAAA 58.770 42.857 0.00 0.00 37.32 2.44
555 698 2.622942 AGCTCCTTTGATGTCGCAAAAA 59.377 40.909 0.00 0.00 37.32 1.94
589 732 2.125673 CTCAGCCACGTAACCCCG 60.126 66.667 0.00 0.00 0.00 5.73
595 738 1.740296 CCACGTAACCCCGCTTCTG 60.740 63.158 0.00 0.00 0.00 3.02
603 746 3.080121 CCCGCTTCTGAGAGGCCT 61.080 66.667 3.86 3.86 41.12 5.19
604 747 1.758514 CCCGCTTCTGAGAGGCCTA 60.759 63.158 4.42 0.00 41.12 3.93
605 748 1.439644 CCGCTTCTGAGAGGCCTAC 59.560 63.158 4.42 3.40 36.01 3.18
606 749 1.064946 CGCTTCTGAGAGGCCTACG 59.935 63.158 4.42 0.20 30.69 3.51
612 756 0.171455 CTGAGAGGCCTACGACACAC 59.829 60.000 4.42 0.00 0.00 3.82
614 758 0.818296 GAGAGGCCTACGACACACAT 59.182 55.000 4.42 0.00 0.00 3.21
621 765 2.096417 GCCTACGACACACATTGACAAC 60.096 50.000 0.00 0.00 0.00 3.32
624 768 3.462483 ACGACACACATTGACAACCTA 57.538 42.857 0.00 0.00 0.00 3.08
629 773 2.736721 CACACATTGACAACCTACTCCG 59.263 50.000 0.00 0.00 0.00 4.63
639 783 0.323542 ACCTACTCCGGTGGACTCAG 60.324 60.000 8.63 0.00 35.52 3.35
744 893 3.643978 GCGCGCATCTAGCTTGGG 61.644 66.667 29.10 0.00 42.61 4.12
773 922 0.179020 CCAGCAGTTTCCACCAGTCA 60.179 55.000 0.00 0.00 0.00 3.41
791 940 2.669569 GCCACTGGACACGCATGT 60.670 61.111 0.00 0.00 43.71 3.21
839 988 2.191354 CTCTCGCGGGTCACGTTGTA 62.191 60.000 5.57 0.00 46.52 2.41
840 989 1.153901 CTCGCGGGTCACGTTGTAT 60.154 57.895 6.13 0.00 46.52 2.29
860 1009 9.376075 GTTGTATATATCTACTACACGGCTAGA 57.624 37.037 0.00 0.00 30.74 2.43
862 1011 8.202811 TGTATATATCTACTACACGGCTAGAGG 58.797 40.741 0.00 0.00 0.00 3.69
868 1017 0.178998 TACACGGCTAGAGGGCTAGG 60.179 60.000 0.00 0.00 43.54 3.02
911 1060 2.572284 GTGACCCTCGGTTCCTCG 59.428 66.667 0.00 0.00 35.25 4.63
933 1082 2.296190 TCATATTCACCACGATCCCGAG 59.704 50.000 0.00 0.00 39.50 4.63
972 1121 2.959372 CACCTGACGGCGACACTA 59.041 61.111 16.62 0.00 0.00 2.74
1123 1281 1.599606 GCGAGACTTCTGCTCCCTCA 61.600 60.000 0.00 0.00 0.00 3.86
1144 1302 3.476031 AAGTGGGTGTCGCTGGTGG 62.476 63.158 0.00 0.00 36.17 4.61
1149 1307 2.574955 GGTGTCGCTGGTGGAGACT 61.575 63.158 0.00 0.00 43.56 3.24
1327 1485 2.203422 CCAACAAGGGGTTCGGCA 60.203 61.111 0.00 0.00 37.72 5.69
1401 1559 2.752640 TCGTTCGAGGCCGATCCA 60.753 61.111 0.00 0.00 45.10 3.41
1440 1598 0.185175 AAGGCTTCGTGGGTTTCCTT 59.815 50.000 0.00 0.00 0.00 3.36
1517 1678 0.743097 GATGGTGATCCTGCTTTGCC 59.257 55.000 0.00 0.00 34.23 4.52
1519 1680 0.178967 TGGTGATCCTGCTTTGCCAA 60.179 50.000 0.00 0.00 34.23 4.52
1586 1747 5.582269 CAGTATGTTCGATCACAAGTCCATT 59.418 40.000 0.00 0.00 0.00 3.16
1589 1750 3.244387 TGTTCGATCACAAGTCCATTCCA 60.244 43.478 0.00 0.00 0.00 3.53
1637 1798 6.071896 GGAAATTTTGGAGAACTCTACTTGGG 60.072 42.308 0.00 0.00 0.00 4.12
1690 1851 8.441312 TGTTTGAAGTTAGAACTACCGAAAAT 57.559 30.769 0.00 0.00 38.57 1.82
1749 1911 9.391006 CCTGTGTGGTAAGCTATCTTAAAATTA 57.609 33.333 0.00 0.00 36.62 1.40
1774 1936 7.458409 AATATACAGCAGCATAAAAGGATGG 57.542 36.000 0.00 0.00 0.00 3.51
1828 1990 6.584563 GTCCTGCGTGCTAAAAATGAATTTTA 59.415 34.615 1.61 0.00 41.42 1.52
1829 1991 6.584563 TCCTGCGTGCTAAAAATGAATTTTAC 59.415 34.615 1.61 0.00 41.42 2.01
1830 1992 6.364706 CCTGCGTGCTAAAAATGAATTTTACA 59.635 34.615 1.61 0.00 41.42 2.41
1833 1995 8.768955 TGCGTGCTAAAAATGAATTTTACAAAT 58.231 25.926 1.61 0.00 41.42 2.32
1834 1996 9.039500 GCGTGCTAAAAATGAATTTTACAAATG 57.961 29.630 1.61 0.00 41.42 2.32
1875 2037 7.750229 AAATAGATGTGTTCATTGTCACACT 57.250 32.000 17.17 16.11 45.26 3.55
1924 2086 8.490355 GCAGGTGAAAAACTTAATCATTTTGAG 58.510 33.333 0.00 0.00 0.00 3.02
1925 2087 8.490355 CAGGTGAAAAACTTAATCATTTTGAGC 58.510 33.333 0.00 0.00 31.04 4.26
1927 2089 9.691362 GGTGAAAAACTTAATCATTTTGAGCTA 57.309 29.630 0.00 0.00 29.26 3.32
1931 2093 9.709495 AAAAACTTAATCATTTTGAGCTATGCA 57.291 25.926 0.00 0.00 0.00 3.96
1932 2094 8.922058 AAACTTAATCATTTTGAGCTATGCAG 57.078 30.769 0.00 0.00 0.00 4.41
1933 2095 7.870509 ACTTAATCATTTTGAGCTATGCAGA 57.129 32.000 0.00 0.00 0.00 4.26
1936 2098 9.745880 CTTAATCATTTTGAGCTATGCAGAAAT 57.254 29.630 0.00 0.00 0.00 2.17
1944 2106 8.746922 TTTGAGCTATGCAGAAATAAAACAAG 57.253 30.769 0.00 0.00 0.00 3.16
1950 2112 7.698130 GCTATGCAGAAATAAAACAAGTCGAAT 59.302 33.333 0.00 0.00 0.00 3.34
1959 2121 4.320608 AAACAAGTCGAATGCCAAATGT 57.679 36.364 0.00 0.00 0.00 2.71
1960 2122 4.320608 AACAAGTCGAATGCCAAATGTT 57.679 36.364 0.00 0.00 0.00 2.71
1961 2123 5.446143 AACAAGTCGAATGCCAAATGTTA 57.554 34.783 0.00 0.00 0.00 2.41
1962 2124 4.794169 ACAAGTCGAATGCCAAATGTTAC 58.206 39.130 0.00 0.00 0.00 2.50
1963 2125 4.165779 CAAGTCGAATGCCAAATGTTACC 58.834 43.478 0.00 0.00 0.00 2.85
1964 2126 3.686016 AGTCGAATGCCAAATGTTACCT 58.314 40.909 0.00 0.00 0.00 3.08
1965 2127 3.689649 AGTCGAATGCCAAATGTTACCTC 59.310 43.478 0.00 0.00 0.00 3.85
1966 2128 3.013921 TCGAATGCCAAATGTTACCTCC 58.986 45.455 0.00 0.00 0.00 4.30
1967 2129 2.752354 CGAATGCCAAATGTTACCTCCA 59.248 45.455 0.00 0.00 0.00 3.86
1968 2130 3.192422 CGAATGCCAAATGTTACCTCCAA 59.808 43.478 0.00 0.00 0.00 3.53
1969 2131 4.321601 CGAATGCCAAATGTTACCTCCAAA 60.322 41.667 0.00 0.00 0.00 3.28
1970 2132 5.624281 CGAATGCCAAATGTTACCTCCAAAT 60.624 40.000 0.00 0.00 0.00 2.32
1971 2133 6.405286 CGAATGCCAAATGTTACCTCCAAATA 60.405 38.462 0.00 0.00 0.00 1.40
2019 2191 3.331591 ACTGCTATCCCATATGGCATGAA 59.668 43.478 16.97 0.00 35.04 2.57
2021 2193 4.738685 TGCTATCCCATATGGCATGAAAA 58.261 39.130 16.97 1.29 30.51 2.29
2030 2202 6.407187 CCCATATGGCATGAAAATTGTCAAGA 60.407 38.462 16.97 0.00 31.53 3.02
2031 2203 7.042950 CCATATGGCATGAAAATTGTCAAGAA 58.957 34.615 9.29 0.00 31.53 2.52
2034 2206 5.856156 TGGCATGAAAATTGTCAAGAACAT 58.144 33.333 1.55 0.00 37.82 2.71
2037 2209 7.930325 TGGCATGAAAATTGTCAAGAACATTTA 59.070 29.630 1.55 0.00 37.82 1.40
2061 2233 9.976511 TTACCACACTAATATAAGCATCTACAC 57.023 33.333 0.00 0.00 0.00 2.90
2147 2319 3.197664 CTCCCTGGAGCCAAAATCC 57.802 57.895 0.00 0.00 35.31 3.01
2148 2320 0.749454 CTCCCTGGAGCCAAAATCCG 60.749 60.000 0.00 0.00 39.91 4.18
2149 2321 2.418083 CCCTGGAGCCAAAATCCGC 61.418 63.158 0.00 0.00 39.91 5.54
2150 2322 2.764314 CCTGGAGCCAAAATCCGCG 61.764 63.158 0.00 0.00 39.91 6.46
2151 2323 2.033448 TGGAGCCAAAATCCGCGT 59.967 55.556 4.92 0.00 39.91 6.01
2152 2324 1.982073 CTGGAGCCAAAATCCGCGTC 61.982 60.000 4.92 0.00 39.91 5.19
2153 2325 2.761195 GGAGCCAAAATCCGCGTCC 61.761 63.158 4.92 0.00 0.00 4.79
2154 2326 2.750237 AGCCAAAATCCGCGTCCC 60.750 61.111 4.92 0.00 0.00 4.46
2155 2327 2.750237 GCCAAAATCCGCGTCCCT 60.750 61.111 4.92 0.00 0.00 4.20
2156 2328 1.450669 GCCAAAATCCGCGTCCCTA 60.451 57.895 4.92 0.00 0.00 3.53
2157 2329 0.818040 GCCAAAATCCGCGTCCCTAT 60.818 55.000 4.92 0.00 0.00 2.57
2158 2330 1.226746 CCAAAATCCGCGTCCCTATC 58.773 55.000 4.92 0.00 0.00 2.08
2159 2331 1.226746 CAAAATCCGCGTCCCTATCC 58.773 55.000 4.92 0.00 0.00 2.59
2160 2332 0.834612 AAAATCCGCGTCCCTATCCA 59.165 50.000 4.92 0.00 0.00 3.41
2161 2333 0.834612 AAATCCGCGTCCCTATCCAA 59.165 50.000 4.92 0.00 0.00 3.53
2162 2334 0.834612 AATCCGCGTCCCTATCCAAA 59.165 50.000 4.92 0.00 0.00 3.28
2163 2335 0.834612 ATCCGCGTCCCTATCCAAAA 59.165 50.000 4.92 0.00 0.00 2.44
2164 2336 0.834612 TCCGCGTCCCTATCCAAAAT 59.165 50.000 4.92 0.00 0.00 1.82
2165 2337 2.040939 TCCGCGTCCCTATCCAAAATA 58.959 47.619 4.92 0.00 0.00 1.40
2166 2338 2.635915 TCCGCGTCCCTATCCAAAATAT 59.364 45.455 4.92 0.00 0.00 1.28
2167 2339 2.742053 CCGCGTCCCTATCCAAAATATG 59.258 50.000 4.92 0.00 0.00 1.78
2168 2340 3.399330 CGCGTCCCTATCCAAAATATGT 58.601 45.455 0.00 0.00 0.00 2.29
2169 2341 3.813166 CGCGTCCCTATCCAAAATATGTT 59.187 43.478 0.00 0.00 0.00 2.71
2170 2342 4.084013 CGCGTCCCTATCCAAAATATGTTC 60.084 45.833 0.00 0.00 0.00 3.18
2171 2343 4.215613 GCGTCCCTATCCAAAATATGTTCC 59.784 45.833 0.00 0.00 0.00 3.62
2172 2344 4.451096 CGTCCCTATCCAAAATATGTTCCG 59.549 45.833 0.00 0.00 0.00 4.30
2173 2345 4.215613 GTCCCTATCCAAAATATGTTCCGC 59.784 45.833 0.00 0.00 0.00 5.54
2174 2346 3.188460 CCCTATCCAAAATATGTTCCGCG 59.812 47.826 0.00 0.00 0.00 6.46
2175 2347 3.188460 CCTATCCAAAATATGTTCCGCGG 59.812 47.826 22.12 22.12 0.00 6.46
2176 2348 1.384525 TCCAAAATATGTTCCGCGGG 58.615 50.000 27.83 6.80 0.00 6.13
2177 2349 0.248866 CCAAAATATGTTCCGCGGGC 60.249 55.000 27.83 19.09 0.00 6.13
2178 2350 0.738389 CAAAATATGTTCCGCGGGCT 59.262 50.000 27.83 10.08 0.00 5.19
2179 2351 1.944024 CAAAATATGTTCCGCGGGCTA 59.056 47.619 27.83 12.14 0.00 3.93
2180 2352 1.589803 AAATATGTTCCGCGGGCTAC 58.410 50.000 27.83 20.63 0.00 3.58
2181 2353 0.756903 AATATGTTCCGCGGGCTACT 59.243 50.000 27.83 9.32 0.00 2.57
2182 2354 0.756903 ATATGTTCCGCGGGCTACTT 59.243 50.000 27.83 19.58 0.00 2.24
2183 2355 0.179094 TATGTTCCGCGGGCTACTTG 60.179 55.000 27.83 0.00 0.00 3.16
2184 2356 2.818274 GTTCCGCGGGCTACTTGG 60.818 66.667 27.83 0.00 0.00 3.61
2185 2357 4.770874 TTCCGCGGGCTACTTGGC 62.771 66.667 27.83 0.00 40.96 4.52
2188 2360 4.451150 CGCGGGCTACTTGGCAGA 62.451 66.667 0.00 0.00 43.83 4.26
2189 2361 2.820037 GCGGGCTACTTGGCAGAC 60.820 66.667 0.00 0.00 43.83 3.51
2190 2362 2.662596 CGGGCTACTTGGCAGACA 59.337 61.111 0.00 0.00 43.83 3.41
2191 2363 1.003839 CGGGCTACTTGGCAGACAA 60.004 57.895 0.00 0.00 43.83 3.18
2192 2364 0.392998 CGGGCTACTTGGCAGACAAT 60.393 55.000 0.00 0.00 43.83 2.71
2193 2365 1.383523 GGGCTACTTGGCAGACAATC 58.616 55.000 0.00 0.00 43.83 2.67
2194 2366 1.065126 GGGCTACTTGGCAGACAATCT 60.065 52.381 0.00 0.00 43.83 2.40
2195 2367 2.619074 GGGCTACTTGGCAGACAATCTT 60.619 50.000 0.00 0.00 43.83 2.40
2196 2368 3.084786 GGCTACTTGGCAGACAATCTTT 58.915 45.455 0.00 0.00 38.65 2.52
2197 2369 3.507622 GGCTACTTGGCAGACAATCTTTT 59.492 43.478 0.00 0.00 38.65 2.27
2198 2370 4.700213 GGCTACTTGGCAGACAATCTTTTA 59.300 41.667 0.00 0.00 38.65 1.52
2199 2371 5.163713 GGCTACTTGGCAGACAATCTTTTAG 60.164 44.000 0.00 0.00 38.65 1.85
2200 2372 5.643777 GCTACTTGGCAGACAATCTTTTAGA 59.356 40.000 0.00 0.00 38.65 2.10
2201 2373 5.948992 ACTTGGCAGACAATCTTTTAGAC 57.051 39.130 0.00 0.00 38.65 2.59
2202 2374 5.376625 ACTTGGCAGACAATCTTTTAGACA 58.623 37.500 0.00 0.00 38.65 3.41
2203 2375 6.006449 ACTTGGCAGACAATCTTTTAGACAT 58.994 36.000 0.00 0.00 38.65 3.06
2204 2376 7.168219 ACTTGGCAGACAATCTTTTAGACATA 58.832 34.615 0.00 0.00 38.65 2.29
2205 2377 7.665559 ACTTGGCAGACAATCTTTTAGACATAA 59.334 33.333 0.00 0.00 38.65 1.90
2206 2378 8.579850 TTGGCAGACAATCTTTTAGACATAAT 57.420 30.769 0.00 0.00 33.18 1.28
2207 2379 8.579850 TGGCAGACAATCTTTTAGACATAATT 57.420 30.769 0.00 0.00 0.00 1.40
2208 2380 9.679661 TGGCAGACAATCTTTTAGACATAATTA 57.320 29.630 0.00 0.00 0.00 1.40
2221 2393 9.639563 TTTAGACATAATTATGAGGAATTGGCA 57.360 29.630 28.13 4.55 37.15 4.92
2222 2394 7.516198 AGACATAATTATGAGGAATTGGCAC 57.484 36.000 28.13 7.50 37.15 5.01
2223 2395 6.205464 AGACATAATTATGAGGAATTGGCACG 59.795 38.462 28.13 0.97 37.15 5.34
2224 2396 5.241506 ACATAATTATGAGGAATTGGCACGG 59.758 40.000 28.13 0.38 37.15 4.94
2225 2397 2.051334 TTATGAGGAATTGGCACGGG 57.949 50.000 0.00 0.00 0.00 5.28
2226 2398 1.208706 TATGAGGAATTGGCACGGGA 58.791 50.000 0.00 0.00 0.00 5.14
2227 2399 0.107017 ATGAGGAATTGGCACGGGAG 60.107 55.000 0.00 0.00 0.00 4.30
2228 2400 8.330617 TAATTATGAGGAATTGGCACGGGAGT 62.331 42.308 0.00 0.00 35.31 3.85
2229 2401 0.539986 GAGGAATTGGCACGGGAGTA 59.460 55.000 0.00 0.00 44.67 2.59
2230 2402 1.141053 GAGGAATTGGCACGGGAGTAT 59.859 52.381 0.00 0.00 44.67 2.12
2231 2403 1.564348 AGGAATTGGCACGGGAGTATT 59.436 47.619 0.00 0.00 44.67 1.89
2232 2404 1.676006 GGAATTGGCACGGGAGTATTG 59.324 52.381 0.00 0.00 44.67 1.90
2233 2405 2.365582 GAATTGGCACGGGAGTATTGT 58.634 47.619 0.00 0.00 44.67 2.71
2234 2406 1.750193 ATTGGCACGGGAGTATTGTG 58.250 50.000 0.00 0.00 44.67 3.33
2235 2407 0.398696 TTGGCACGGGAGTATTGTGT 59.601 50.000 0.00 0.00 44.67 3.72
2236 2408 0.036765 TGGCACGGGAGTATTGTGTC 60.037 55.000 0.00 0.00 44.67 3.67
2237 2409 1.082117 GGCACGGGAGTATTGTGTCG 61.082 60.000 0.00 0.00 44.67 4.35
2238 2410 1.082117 GCACGGGAGTATTGTGTCGG 61.082 60.000 0.00 0.00 44.67 4.79
2239 2411 0.528924 CACGGGAGTATTGTGTCGGA 59.471 55.000 0.00 0.00 44.67 4.55
2240 2412 0.815734 ACGGGAGTATTGTGTCGGAG 59.184 55.000 0.00 0.00 44.60 4.63
2241 2413 0.815734 CGGGAGTATTGTGTCGGAGT 59.184 55.000 0.00 0.00 0.00 3.85
2242 2414 2.019249 CGGGAGTATTGTGTCGGAGTA 58.981 52.381 0.00 0.00 0.00 2.59
2243 2415 2.424601 CGGGAGTATTGTGTCGGAGTAA 59.575 50.000 0.00 0.00 0.00 2.24
2244 2416 3.119388 CGGGAGTATTGTGTCGGAGTAAA 60.119 47.826 0.00 0.00 0.00 2.01
2245 2417 4.441079 CGGGAGTATTGTGTCGGAGTAAAT 60.441 45.833 0.00 0.00 0.00 1.40
2246 2418 4.809426 GGGAGTATTGTGTCGGAGTAAATG 59.191 45.833 0.00 0.00 0.00 2.32
2247 2419 5.394883 GGGAGTATTGTGTCGGAGTAAATGA 60.395 44.000 0.00 0.00 0.00 2.57
2248 2420 5.519206 GGAGTATTGTGTCGGAGTAAATGAC 59.481 44.000 0.00 0.00 0.00 3.06
2249 2421 5.416947 AGTATTGTGTCGGAGTAAATGACC 58.583 41.667 0.00 0.00 0.00 4.02
2250 2422 3.755112 TTGTGTCGGAGTAAATGACCA 57.245 42.857 0.00 0.00 0.00 4.02
2251 2423 3.034721 TGTGTCGGAGTAAATGACCAC 57.965 47.619 0.00 0.00 0.00 4.16
2252 2424 1.990563 GTGTCGGAGTAAATGACCACG 59.009 52.381 0.00 0.00 0.00 4.94
2253 2425 1.067425 TGTCGGAGTAAATGACCACGG 60.067 52.381 0.00 0.00 0.00 4.94
2254 2426 0.533491 TCGGAGTAAATGACCACGGG 59.467 55.000 0.00 0.00 0.00 5.28
2255 2427 0.248289 CGGAGTAAATGACCACGGGT 59.752 55.000 0.00 0.00 39.44 5.28
2256 2428 1.477700 CGGAGTAAATGACCACGGGTA 59.522 52.381 0.00 0.00 35.25 3.69
2257 2429 2.480759 CGGAGTAAATGACCACGGGTAG 60.481 54.545 0.00 0.00 35.25 3.18
2258 2430 2.547826 GAGTAAATGACCACGGGTAGC 58.452 52.381 0.00 0.00 35.25 3.58
2259 2431 1.208776 AGTAAATGACCACGGGTAGCC 59.791 52.381 0.00 0.00 35.25 3.93
2260 2432 1.208776 GTAAATGACCACGGGTAGCCT 59.791 52.381 9.73 0.00 35.25 4.58
2261 2433 1.575419 AAATGACCACGGGTAGCCTA 58.425 50.000 9.73 0.00 35.25 3.93
2262 2434 1.575419 AATGACCACGGGTAGCCTAA 58.425 50.000 9.73 0.00 35.25 2.69
2263 2435 0.828677 ATGACCACGGGTAGCCTAAC 59.171 55.000 9.73 0.00 35.25 2.34
2264 2436 1.259840 TGACCACGGGTAGCCTAACC 61.260 60.000 9.73 0.00 35.25 2.85
2276 2448 2.793831 CCTAACCGGCTTCCATTGG 58.206 57.895 0.00 0.00 0.00 3.16
2277 2449 1.384222 CCTAACCGGCTTCCATTGGC 61.384 60.000 0.00 0.00 0.00 4.52
2278 2450 1.379309 TAACCGGCTTCCATTGGCC 60.379 57.895 0.00 0.00 44.43 5.36
2279 2451 2.847366 TAACCGGCTTCCATTGGCCC 62.847 60.000 0.00 0.00 45.01 5.80
2280 2452 4.447342 CCGGCTTCCATTGGCCCT 62.447 66.667 0.00 0.00 45.01 5.19
2281 2453 2.362889 CGGCTTCCATTGGCCCTT 60.363 61.111 0.00 0.00 45.01 3.95
2282 2454 1.077068 CGGCTTCCATTGGCCCTTA 60.077 57.895 0.00 0.00 45.01 2.69
2283 2455 1.103398 CGGCTTCCATTGGCCCTTAG 61.103 60.000 0.00 0.00 45.01 2.18
2284 2456 0.258774 GGCTTCCATTGGCCCTTAGA 59.741 55.000 0.00 0.00 42.30 2.10
2285 2457 1.341976 GGCTTCCATTGGCCCTTAGAA 60.342 52.381 0.00 0.00 42.30 2.10
2286 2458 2.456577 GCTTCCATTGGCCCTTAGAAA 58.543 47.619 0.00 0.00 0.00 2.52
2287 2459 2.831526 GCTTCCATTGGCCCTTAGAAAA 59.168 45.455 0.00 0.00 0.00 2.29
2288 2460 3.260632 GCTTCCATTGGCCCTTAGAAAAA 59.739 43.478 0.00 0.00 0.00 1.94
2302 2474 3.121934 AAAAACAACGGGCCGACC 58.878 55.556 35.78 0.00 0.00 4.79
2315 2487 4.697756 CGACCGGGCCTTGAAGCA 62.698 66.667 6.32 0.00 0.00 3.91
2316 2488 3.056328 GACCGGGCCTTGAAGCAC 61.056 66.667 6.32 0.00 0.00 4.40
2317 2489 4.660938 ACCGGGCCTTGAAGCACC 62.661 66.667 6.32 0.00 30.00 5.01
2319 2491 4.659172 CGGGCCTTGAAGCACCCA 62.659 66.667 18.11 0.00 42.97 4.51
2320 2492 2.203625 GGGCCTTGAAGCACCCAA 60.204 61.111 14.53 0.00 42.33 4.12
2321 2493 2.278330 GGGCCTTGAAGCACCCAAG 61.278 63.158 14.53 0.00 42.33 3.61
2322 2494 1.228552 GGCCTTGAAGCACCCAAGA 60.229 57.895 12.41 0.00 42.57 3.02
2323 2495 1.527433 GGCCTTGAAGCACCCAAGAC 61.527 60.000 12.41 3.29 42.57 3.01
2324 2496 0.823356 GCCTTGAAGCACCCAAGACA 60.823 55.000 12.41 0.00 42.57 3.41
2325 2497 0.954452 CCTTGAAGCACCCAAGACAC 59.046 55.000 12.41 0.00 42.57 3.67
2326 2498 0.588252 CTTGAAGCACCCAAGACACG 59.412 55.000 6.85 0.00 42.57 4.49
2327 2499 0.817634 TTGAAGCACCCAAGACACGG 60.818 55.000 0.00 0.00 0.00 4.94
2351 2523 3.234730 CTTCCTCCGGCCGGCTAT 61.235 66.667 39.89 0.00 34.68 2.97
2352 2524 3.227792 CTTCCTCCGGCCGGCTATC 62.228 68.421 39.89 9.02 34.68 2.08
2353 2525 3.751049 TTCCTCCGGCCGGCTATCT 62.751 63.158 39.89 0.00 34.68 1.98
2354 2526 3.686045 CCTCCGGCCGGCTATCTC 61.686 72.222 39.89 8.15 34.68 2.75
2355 2527 2.912542 CTCCGGCCGGCTATCTCA 60.913 66.667 39.89 19.63 34.68 3.27
2356 2528 3.214250 CTCCGGCCGGCTATCTCAC 62.214 68.421 39.89 6.45 34.68 3.51
2357 2529 3.536917 CCGGCCGGCTATCTCACA 61.537 66.667 34.96 0.00 0.00 3.58
2358 2530 2.028190 CGGCCGGCTATCTCACAG 59.972 66.667 28.56 2.86 0.00 3.66
2359 2531 2.423446 GGCCGGCTATCTCACAGG 59.577 66.667 28.56 0.00 0.00 4.00
2360 2532 2.280457 GCCGGCTATCTCACAGGC 60.280 66.667 22.15 0.00 37.61 4.85
2361 2533 2.423446 CCGGCTATCTCACAGGCC 59.577 66.667 0.00 0.00 41.02 5.19
2363 2535 2.423446 GGCTATCTCACAGGCCGG 59.577 66.667 0.00 0.00 35.08 6.13
2364 2536 2.280457 GCTATCTCACAGGCCGGC 60.280 66.667 21.18 21.18 0.00 6.13
2365 2537 2.801631 GCTATCTCACAGGCCGGCT 61.802 63.158 28.56 9.77 0.00 5.52
2366 2538 1.464376 GCTATCTCACAGGCCGGCTA 61.464 60.000 28.56 7.02 0.00 3.93
2367 2539 0.315568 CTATCTCACAGGCCGGCTAC 59.684 60.000 28.56 11.04 0.00 3.58
2368 2540 1.113517 TATCTCACAGGCCGGCTACC 61.114 60.000 28.56 10.16 0.00 3.18
2393 2565 3.408853 GGCCCGGCCCTAAACTCT 61.409 66.667 18.83 0.00 44.06 3.24
2394 2566 2.189784 GCCCGGCCCTAAACTCTC 59.810 66.667 0.00 0.00 0.00 3.20
2395 2567 2.368011 GCCCGGCCCTAAACTCTCT 61.368 63.158 0.00 0.00 0.00 3.10
2396 2568 1.911702 GCCCGGCCCTAAACTCTCTT 61.912 60.000 0.00 0.00 0.00 2.85
2397 2569 0.107654 CCCGGCCCTAAACTCTCTTG 60.108 60.000 0.00 0.00 0.00 3.02
2398 2570 0.107654 CCGGCCCTAAACTCTCTTGG 60.108 60.000 0.00 0.00 0.00 3.61
2399 2571 0.902531 CGGCCCTAAACTCTCTTGGA 59.097 55.000 0.00 0.00 0.00 3.53
2400 2572 1.134670 CGGCCCTAAACTCTCTTGGAG 60.135 57.143 0.00 0.00 46.87 3.86
2401 2573 1.210722 GGCCCTAAACTCTCTTGGAGG 59.789 57.143 0.00 0.00 45.83 4.30
2402 2574 2.188817 GCCCTAAACTCTCTTGGAGGA 58.811 52.381 0.00 0.00 45.83 3.71
2403 2575 2.093394 GCCCTAAACTCTCTTGGAGGAC 60.093 54.545 0.00 0.00 45.83 3.85
2404 2576 2.166664 CCCTAAACTCTCTTGGAGGACG 59.833 54.545 0.00 0.00 45.83 4.79
2405 2577 2.417515 CCTAAACTCTCTTGGAGGACGC 60.418 54.545 0.00 0.00 45.83 5.19
2406 2578 0.321996 AAACTCTCTTGGAGGACGCC 59.678 55.000 0.00 0.00 45.83 5.68
2407 2579 0.832135 AACTCTCTTGGAGGACGCCA 60.832 55.000 0.00 0.00 45.83 5.69
2408 2580 1.216710 CTCTCTTGGAGGACGCCAC 59.783 63.158 0.00 0.00 37.75 5.01
2409 2581 2.125912 CTCTTGGAGGACGCCACG 60.126 66.667 0.00 0.00 37.75 4.94
2410 2582 2.599281 TCTTGGAGGACGCCACGA 60.599 61.111 0.00 0.00 37.75 4.35
2411 2583 1.949847 CTCTTGGAGGACGCCACGAT 61.950 60.000 2.05 0.00 35.89 3.73
2412 2584 0.681887 TCTTGGAGGACGCCACGATA 60.682 55.000 0.00 0.00 37.75 2.92
2413 2585 0.249073 CTTGGAGGACGCCACGATAG 60.249 60.000 0.00 0.00 37.75 2.08
2414 2586 1.672854 TTGGAGGACGCCACGATAGG 61.673 60.000 0.00 0.00 37.75 2.57
2415 2587 2.728817 GAGGACGCCACGATAGGG 59.271 66.667 0.00 0.00 43.77 3.53
2416 2588 3.501458 GAGGACGCCACGATAGGGC 62.501 68.421 0.00 0.00 45.38 5.19
2417 2589 4.603946 GGACGCCACGATAGGGCC 62.604 72.222 0.00 0.00 45.86 5.80
2418 2590 3.537874 GACGCCACGATAGGGCCT 61.538 66.667 12.58 12.58 45.86 5.19
2419 2591 2.123597 ACGCCACGATAGGGCCTA 60.124 61.111 17.16 17.16 45.86 3.93
2420 2592 2.338984 CGCCACGATAGGGCCTAC 59.661 66.667 17.19 9.12 45.86 3.18
2421 2593 2.201022 CGCCACGATAGGGCCTACT 61.201 63.158 17.19 5.26 45.86 2.57
2422 2594 1.666580 GCCACGATAGGGCCTACTC 59.333 63.158 17.19 13.26 43.80 2.59
2423 2595 1.817911 GCCACGATAGGGCCTACTCC 61.818 65.000 17.19 7.37 43.80 3.85
2424 2596 0.469331 CCACGATAGGGCCTACTCCA 60.469 60.000 17.19 0.00 39.13 3.86
2425 2597 1.410004 CACGATAGGGCCTACTCCAA 58.590 55.000 17.19 0.00 43.77 3.53
2426 2598 1.341531 CACGATAGGGCCTACTCCAAG 59.658 57.143 17.19 6.34 43.77 3.61
2427 2599 1.217183 ACGATAGGGCCTACTCCAAGA 59.783 52.381 17.19 0.00 43.77 3.02
2428 2600 2.317040 CGATAGGGCCTACTCCAAGAA 58.683 52.381 17.19 0.00 0.00 2.52
2429 2601 2.297597 CGATAGGGCCTACTCCAAGAAG 59.702 54.545 17.19 0.00 0.00 2.85
2430 2602 1.497161 TAGGGCCTACTCCAAGAAGC 58.503 55.000 9.81 0.00 0.00 3.86
2431 2603 1.224870 GGGCCTACTCCAAGAAGCC 59.775 63.158 0.84 0.00 39.73 4.35
2432 2604 1.153349 GGCCTACTCCAAGAAGCCG 60.153 63.158 0.00 0.00 0.00 5.52
2433 2605 1.153349 GCCTACTCCAAGAAGCCGG 60.153 63.158 0.00 0.00 0.00 6.13
2434 2606 1.153349 CCTACTCCAAGAAGCCGGC 60.153 63.158 21.89 21.89 0.00 6.13
2435 2607 1.153349 CTACTCCAAGAAGCCGGCC 60.153 63.158 26.15 9.10 0.00 6.13
2436 2608 1.899437 CTACTCCAAGAAGCCGGCCA 61.899 60.000 26.15 0.00 0.00 5.36
2437 2609 2.180159 TACTCCAAGAAGCCGGCCAC 62.180 60.000 26.15 17.92 0.00 5.01
2438 2610 4.697756 TCCAAGAAGCCGGCCACG 62.698 66.667 26.15 7.44 40.55 4.94
2456 2628 2.667348 GGAAGGACCGACTCCAAGA 58.333 57.895 5.66 0.00 42.46 3.02
2457 2629 0.974383 GGAAGGACCGACTCCAAGAA 59.026 55.000 5.66 0.00 42.46 2.52
2458 2630 1.066787 GGAAGGACCGACTCCAAGAAG 60.067 57.143 5.66 0.00 42.46 2.85
2459 2631 0.321996 AAGGACCGACTCCAAGAAGC 59.678 55.000 2.34 0.00 42.46 3.86
2460 2632 1.079057 GGACCGACTCCAAGAAGCC 60.079 63.158 0.00 0.00 39.21 4.35
2461 2633 1.446272 GACCGACTCCAAGAAGCCG 60.446 63.158 0.00 0.00 0.00 5.52
2462 2634 2.125512 CCGACTCCAAGAAGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
2463 2635 2.815647 CGACTCCAAGAAGCCGGC 60.816 66.667 21.89 21.89 0.00 6.13
2464 2636 2.436824 GACTCCAAGAAGCCGGCC 60.437 66.667 26.15 9.10 0.00 6.13
2465 2637 3.978571 GACTCCAAGAAGCCGGCCC 62.979 68.421 26.15 16.22 0.00 5.80
2466 2638 4.033776 CTCCAAGAAGCCGGCCCA 62.034 66.667 26.15 0.00 0.00 5.36
2467 2639 3.567579 CTCCAAGAAGCCGGCCCAA 62.568 63.158 26.15 0.48 0.00 4.12
2468 2640 3.064324 CCAAGAAGCCGGCCCAAG 61.064 66.667 26.15 9.82 0.00 3.61
2469 2641 2.034066 CAAGAAGCCGGCCCAAGA 59.966 61.111 26.15 0.00 0.00 3.02
2470 2642 2.042831 CAAGAAGCCGGCCCAAGAG 61.043 63.158 26.15 5.28 0.00 2.85
2471 2643 3.273788 AAGAAGCCGGCCCAAGAGG 62.274 63.158 26.15 0.00 39.47 3.69
2472 2644 3.717294 GAAGCCGGCCCAAGAGGA 61.717 66.667 26.15 0.00 38.24 3.71
2473 2645 3.017581 AAGCCGGCCCAAGAGGAT 61.018 61.111 26.15 0.00 38.24 3.24
2474 2646 2.558380 GAAGCCGGCCCAAGAGGATT 62.558 60.000 26.15 7.24 38.24 3.01
2475 2647 2.830370 GCCGGCCCAAGAGGATTG 60.830 66.667 18.11 0.00 38.24 2.67
2476 2648 2.998097 CCGGCCCAAGAGGATTGA 59.002 61.111 0.00 0.00 38.24 2.57
2477 2649 1.533711 CCGGCCCAAGAGGATTGAT 59.466 57.895 0.00 0.00 38.24 2.57
2478 2650 0.106519 CCGGCCCAAGAGGATTGATT 60.107 55.000 0.00 0.00 38.24 2.57
2479 2651 1.312815 CGGCCCAAGAGGATTGATTC 58.687 55.000 0.00 0.00 38.24 2.52
2480 2652 1.697284 GGCCCAAGAGGATTGATTCC 58.303 55.000 0.00 0.00 45.85 3.01
2489 2661 1.312815 GGATTGATTCCAAGAGGCCG 58.687 55.000 0.00 0.00 44.74 6.13
2490 2662 1.312815 GATTGATTCCAAGAGGCCGG 58.687 55.000 0.00 0.00 35.48 6.13
2491 2663 0.753111 ATTGATTCCAAGAGGCCGGC 60.753 55.000 21.18 21.18 35.48 6.13
2492 2664 2.517166 GATTCCAAGAGGCCGGCC 60.517 66.667 39.29 39.29 33.74 6.13
2493 2665 4.129148 ATTCCAAGAGGCCGGCCC 62.129 66.667 41.72 31.06 36.58 5.80
2527 2699 2.437895 GGCCGTGCCCTAAAGGTC 60.438 66.667 3.73 0.00 44.06 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.591877 ACCTCCAGCAAATGATTCTATTGTC 59.408 40.000 0.00 0.00 0.00 3.18
119 120 4.097714 GTGATGTCCATGCGTAAACATTG 58.902 43.478 6.76 0.00 32.70 2.82
157 284 0.319211 CGTGCTAGTTCAACACCGGA 60.319 55.000 9.46 0.00 0.00 5.14
171 298 1.021390 CCGCCTCTTTTGATCGTGCT 61.021 55.000 0.00 0.00 0.00 4.40
326 469 6.992664 ATCTCATTAACCAGATGAGCTAGT 57.007 37.500 8.78 0.00 46.40 2.57
327 470 9.421806 CTTTATCTCATTAACCAGATGAGCTAG 57.578 37.037 8.78 0.00 46.40 3.42
328 471 8.370940 CCTTTATCTCATTAACCAGATGAGCTA 58.629 37.037 8.78 2.33 46.40 3.32
330 473 7.220030 TCCTTTATCTCATTAACCAGATGAGC 58.780 38.462 8.78 0.00 46.40 4.26
347 490 5.187576 CCTCTCCCTCATGAGATCCTTTATC 59.812 48.000 24.62 0.00 40.47 1.75
348 491 5.092968 CCTCTCCCTCATGAGATCCTTTAT 58.907 45.833 24.62 0.00 40.47 1.40
349 492 4.487804 CCTCTCCCTCATGAGATCCTTTA 58.512 47.826 24.62 2.07 40.47 1.85
350 493 3.316501 CCTCTCCCTCATGAGATCCTTT 58.683 50.000 24.62 0.00 40.47 3.11
351 494 2.427593 CCCTCTCCCTCATGAGATCCTT 60.428 54.545 24.62 0.00 40.47 3.36
352 495 1.149711 CCCTCTCCCTCATGAGATCCT 59.850 57.143 24.62 0.00 40.47 3.24
353 496 1.148867 TCCCTCTCCCTCATGAGATCC 59.851 57.143 24.62 0.00 40.47 3.36
354 497 2.158325 ACTCCCTCTCCCTCATGAGATC 60.158 54.545 24.62 0.00 40.47 2.75
355 498 1.865595 ACTCCCTCTCCCTCATGAGAT 59.134 52.381 24.62 0.00 40.47 2.75
356 499 1.313889 ACTCCCTCTCCCTCATGAGA 58.686 55.000 24.62 4.29 39.04 3.27
357 500 2.173126 AACTCCCTCTCCCTCATGAG 57.827 55.000 16.24 16.24 0.00 2.90
358 501 2.649742 AAACTCCCTCTCCCTCATGA 57.350 50.000 0.00 0.00 0.00 3.07
359 502 3.245052 ACAAAAACTCCCTCTCCCTCATG 60.245 47.826 0.00 0.00 0.00 3.07
360 503 2.989571 ACAAAAACTCCCTCTCCCTCAT 59.010 45.455 0.00 0.00 0.00 2.90
361 504 2.106511 CACAAAAACTCCCTCTCCCTCA 59.893 50.000 0.00 0.00 0.00 3.86
362 505 2.106684 ACACAAAAACTCCCTCTCCCTC 59.893 50.000 0.00 0.00 0.00 4.30
363 506 2.106684 GACACAAAAACTCCCTCTCCCT 59.893 50.000 0.00 0.00 0.00 4.20
364 507 2.106684 AGACACAAAAACTCCCTCTCCC 59.893 50.000 0.00 0.00 0.00 4.30
365 508 3.493767 AGACACAAAAACTCCCTCTCC 57.506 47.619 0.00 0.00 0.00 3.71
366 509 4.451900 TGAAGACACAAAAACTCCCTCTC 58.548 43.478 0.00 0.00 0.00 3.20
367 510 4.503714 TGAAGACACAAAAACTCCCTCT 57.496 40.909 0.00 0.00 0.00 3.69
368 511 7.454260 AATATGAAGACACAAAAACTCCCTC 57.546 36.000 0.00 0.00 0.00 4.30
369 512 8.934023 TTAATATGAAGACACAAAAACTCCCT 57.066 30.769 0.00 0.00 0.00 4.20
370 513 9.788960 GATTAATATGAAGACACAAAAACTCCC 57.211 33.333 0.00 0.00 0.00 4.30
371 514 9.490663 CGATTAATATGAAGACACAAAAACTCC 57.509 33.333 0.00 0.00 0.00 3.85
376 519 9.502145 GCATTCGATTAATATGAAGACACAAAA 57.498 29.630 8.18 0.00 0.00 2.44
377 520 8.672815 TGCATTCGATTAATATGAAGACACAAA 58.327 29.630 8.18 0.00 0.00 2.83
378 521 8.207521 TGCATTCGATTAATATGAAGACACAA 57.792 30.769 8.18 0.00 0.00 3.33
379 522 7.710475 TCTGCATTCGATTAATATGAAGACACA 59.290 33.333 1.24 2.24 30.68 3.72
380 523 8.076714 TCTGCATTCGATTAATATGAAGACAC 57.923 34.615 1.24 0.00 30.68 3.67
381 524 8.661352 TTCTGCATTCGATTAATATGAAGACA 57.339 30.769 4.50 6.99 34.46 3.41
385 528 9.942850 TCCTATTCTGCATTCGATTAATATGAA 57.057 29.630 5.38 5.38 0.00 2.57
386 529 9.371136 GTCCTATTCTGCATTCGATTAATATGA 57.629 33.333 0.00 0.00 0.00 2.15
387 530 9.376075 AGTCCTATTCTGCATTCGATTAATATG 57.624 33.333 0.00 0.00 0.00 1.78
388 531 9.376075 CAGTCCTATTCTGCATTCGATTAATAT 57.624 33.333 0.00 0.00 0.00 1.28
389 532 8.763049 CAGTCCTATTCTGCATTCGATTAATA 57.237 34.615 0.00 0.00 0.00 0.98
390 533 7.664082 CAGTCCTATTCTGCATTCGATTAAT 57.336 36.000 0.00 0.00 0.00 1.40
402 545 3.724508 ACGATCTGCAGTCCTATTCTG 57.275 47.619 14.67 0.00 36.18 3.02
403 546 4.744795 AAACGATCTGCAGTCCTATTCT 57.255 40.909 14.67 0.00 0.00 2.40
404 547 4.446051 GCTAAACGATCTGCAGTCCTATTC 59.554 45.833 14.67 2.07 0.00 1.75
405 548 4.372656 GCTAAACGATCTGCAGTCCTATT 58.627 43.478 14.67 7.71 0.00 1.73
406 549 3.243907 GGCTAAACGATCTGCAGTCCTAT 60.244 47.826 14.67 0.00 0.00 2.57
407 550 2.100916 GGCTAAACGATCTGCAGTCCTA 59.899 50.000 14.67 0.00 0.00 2.94
408 551 1.134670 GGCTAAACGATCTGCAGTCCT 60.135 52.381 14.67 0.00 0.00 3.85
409 552 1.134670 AGGCTAAACGATCTGCAGTCC 60.135 52.381 14.67 5.84 0.00 3.85
410 553 2.301577 AGGCTAAACGATCTGCAGTC 57.698 50.000 14.67 9.71 0.00 3.51
411 554 4.408182 AATAGGCTAAACGATCTGCAGT 57.592 40.909 14.67 0.42 0.00 4.40
412 555 5.741388 AAAATAGGCTAAACGATCTGCAG 57.259 39.130 7.63 7.63 0.00 4.41
413 556 5.645929 TGAAAAATAGGCTAAACGATCTGCA 59.354 36.000 0.00 0.00 0.00 4.41
414 557 6.119144 TGAAAAATAGGCTAAACGATCTGC 57.881 37.500 0.00 0.00 0.00 4.26
415 558 7.974675 TCTTGAAAAATAGGCTAAACGATCTG 58.025 34.615 0.00 0.00 0.00 2.90
416 559 8.561738 TTCTTGAAAAATAGGCTAAACGATCT 57.438 30.769 0.00 0.00 0.00 2.75
417 560 9.226345 CATTCTTGAAAAATAGGCTAAACGATC 57.774 33.333 0.00 0.00 0.00 3.69
418 561 8.956426 TCATTCTTGAAAAATAGGCTAAACGAT 58.044 29.630 0.00 0.00 0.00 3.73
419 562 8.330466 TCATTCTTGAAAAATAGGCTAAACGA 57.670 30.769 0.00 0.00 0.00 3.85
420 563 8.964420 TTCATTCTTGAAAAATAGGCTAAACG 57.036 30.769 0.00 0.00 38.90 3.60
433 576 1.335182 TGCGGCGTTTCATTCTTGAAA 59.665 42.857 9.37 0.00 46.88 2.69
434 577 0.947960 TGCGGCGTTTCATTCTTGAA 59.052 45.000 9.37 0.00 40.09 2.69
435 578 0.237235 GTGCGGCGTTTCATTCTTGA 59.763 50.000 9.37 0.00 0.00 3.02
436 579 0.729140 GGTGCGGCGTTTCATTCTTG 60.729 55.000 9.37 0.00 0.00 3.02
437 580 1.169661 TGGTGCGGCGTTTCATTCTT 61.170 50.000 9.37 0.00 0.00 2.52
438 581 1.169661 TTGGTGCGGCGTTTCATTCT 61.170 50.000 9.37 0.00 0.00 2.40
439 582 1.001745 GTTGGTGCGGCGTTTCATTC 61.002 55.000 9.37 0.00 0.00 2.67
440 583 1.007849 GTTGGTGCGGCGTTTCATT 60.008 52.632 9.37 0.00 0.00 2.57
441 584 1.452145 AAGTTGGTGCGGCGTTTCAT 61.452 50.000 9.37 0.00 0.00 2.57
442 585 2.115911 AAGTTGGTGCGGCGTTTCA 61.116 52.632 9.37 1.06 0.00 2.69
443 586 1.657181 CAAGTTGGTGCGGCGTTTC 60.657 57.895 9.37 0.00 0.00 2.78
444 587 2.411290 CAAGTTGGTGCGGCGTTT 59.589 55.556 9.37 0.00 0.00 3.60
445 588 2.826738 ACAAGTTGGTGCGGCGTT 60.827 55.556 9.37 0.00 0.00 4.84
446 589 3.582120 CACAAGTTGGTGCGGCGT 61.582 61.111 9.37 0.00 31.10 5.68
447 590 4.326766 CCACAAGTTGGTGCGGCG 62.327 66.667 7.96 0.51 41.10 6.46
456 599 1.680338 GACTCCTGCAACCACAAGTT 58.320 50.000 0.00 0.00 40.16 2.66
457 600 0.179018 GGACTCCTGCAACCACAAGT 60.179 55.000 0.00 0.00 0.00 3.16
458 601 1.230635 CGGACTCCTGCAACCACAAG 61.231 60.000 0.00 0.00 0.00 3.16
459 602 1.227823 CGGACTCCTGCAACCACAA 60.228 57.895 0.00 0.00 0.00 3.33
460 603 2.425592 CGGACTCCTGCAACCACA 59.574 61.111 0.00 0.00 0.00 4.17
461 604 3.050275 GCGGACTCCTGCAACCAC 61.050 66.667 6.94 0.00 44.05 4.16
467 610 1.202698 AGGATATTTGCGGACTCCTGC 60.203 52.381 5.30 5.30 44.86 4.85
468 611 2.487934 CAGGATATTTGCGGACTCCTG 58.512 52.381 8.83 8.83 44.99 3.86
469 612 1.417890 CCAGGATATTTGCGGACTCCT 59.582 52.381 0.00 0.00 36.79 3.69
470 613 1.141053 ACCAGGATATTTGCGGACTCC 59.859 52.381 0.00 0.00 0.00 3.85
471 614 2.622064 ACCAGGATATTTGCGGACTC 57.378 50.000 0.00 0.00 0.00 3.36
472 615 3.744530 GCTAACCAGGATATTTGCGGACT 60.745 47.826 0.00 0.00 0.00 3.85
473 616 2.548480 GCTAACCAGGATATTTGCGGAC 59.452 50.000 0.00 0.00 0.00 4.79
474 617 2.438021 AGCTAACCAGGATATTTGCGGA 59.562 45.455 0.00 0.00 32.73 5.54
475 618 2.851195 AGCTAACCAGGATATTTGCGG 58.149 47.619 0.00 0.00 32.73 5.69
476 619 3.548818 GCAAGCTAACCAGGATATTTGCG 60.549 47.826 0.00 0.00 32.73 4.85
477 620 3.633986 AGCAAGCTAACCAGGATATTTGC 59.366 43.478 13.88 13.88 39.79 3.68
478 621 4.037208 CCAGCAAGCTAACCAGGATATTTG 59.963 45.833 0.00 0.00 0.00 2.32
479 622 4.210331 CCAGCAAGCTAACCAGGATATTT 58.790 43.478 0.00 0.00 0.00 1.40
480 623 3.825328 CCAGCAAGCTAACCAGGATATT 58.175 45.455 0.00 0.00 0.00 1.28
481 624 2.487986 GCCAGCAAGCTAACCAGGATAT 60.488 50.000 0.00 0.00 0.00 1.63
482 625 1.134098 GCCAGCAAGCTAACCAGGATA 60.134 52.381 0.00 0.00 0.00 2.59
483 626 0.394899 GCCAGCAAGCTAACCAGGAT 60.395 55.000 0.00 0.00 0.00 3.24
484 627 1.002134 GCCAGCAAGCTAACCAGGA 60.002 57.895 0.00 0.00 0.00 3.86
485 628 0.895100 TTGCCAGCAAGCTAACCAGG 60.895 55.000 0.00 0.00 0.00 4.45
486 629 0.524862 CTTGCCAGCAAGCTAACCAG 59.475 55.000 18.62 0.00 45.38 4.00
487 630 2.644887 CTTGCCAGCAAGCTAACCA 58.355 52.632 18.62 0.00 45.38 3.67
497 640 0.521291 TTGTACAATCGCTTGCCAGC 59.479 50.000 3.59 0.00 43.41 4.85
498 641 1.806542 AGTTGTACAATCGCTTGCCAG 59.193 47.619 12.26 0.00 35.69 4.85
499 642 1.890876 AGTTGTACAATCGCTTGCCA 58.109 45.000 12.26 0.00 35.69 4.92
500 643 4.495844 GGAATAGTTGTACAATCGCTTGCC 60.496 45.833 12.26 4.60 35.69 4.52
501 644 4.332819 AGGAATAGTTGTACAATCGCTTGC 59.667 41.667 12.26 8.66 35.69 4.01
502 645 6.422776 AAGGAATAGTTGTACAATCGCTTG 57.577 37.500 12.26 0.00 38.39 4.01
503 646 8.732746 ATTAAGGAATAGTTGTACAATCGCTT 57.267 30.769 12.26 11.93 0.00 4.68
504 647 9.826574 TTATTAAGGAATAGTTGTACAATCGCT 57.173 29.630 12.26 7.00 0.00 4.93
521 664 9.920946 ACATCAAAGGAGCTTTATTATTAAGGA 57.079 29.630 0.00 0.00 31.96 3.36
523 666 9.869844 CGACATCAAAGGAGCTTTATTATTAAG 57.130 33.333 0.00 0.00 31.96 1.85
524 667 8.342634 GCGACATCAAAGGAGCTTTATTATTAA 58.657 33.333 0.00 0.00 31.96 1.40
525 668 7.497579 TGCGACATCAAAGGAGCTTTATTATTA 59.502 33.333 0.00 0.00 31.96 0.98
526 669 6.318648 TGCGACATCAAAGGAGCTTTATTATT 59.681 34.615 0.00 0.00 31.96 1.40
527 670 5.822519 TGCGACATCAAAGGAGCTTTATTAT 59.177 36.000 0.00 0.00 31.96 1.28
528 671 5.182487 TGCGACATCAAAGGAGCTTTATTA 58.818 37.500 0.00 0.00 31.96 0.98
529 672 4.009675 TGCGACATCAAAGGAGCTTTATT 58.990 39.130 0.00 0.00 31.96 1.40
530 673 3.609853 TGCGACATCAAAGGAGCTTTAT 58.390 40.909 0.00 0.00 31.96 1.40
531 674 3.052455 TGCGACATCAAAGGAGCTTTA 57.948 42.857 0.00 0.00 31.96 1.85
532 675 1.896220 TGCGACATCAAAGGAGCTTT 58.104 45.000 0.00 0.00 33.58 3.51
533 676 1.896220 TTGCGACATCAAAGGAGCTT 58.104 45.000 0.00 0.00 0.00 3.74
534 677 1.896220 TTTGCGACATCAAAGGAGCT 58.104 45.000 0.00 0.00 32.69 4.09
535 678 2.704725 TTTTGCGACATCAAAGGAGC 57.295 45.000 0.00 0.00 37.27 4.70
563 706 1.140589 CGTGGCTGAGCTAGTCCAG 59.859 63.158 3.72 8.55 34.63 3.86
564 707 0.323087 TACGTGGCTGAGCTAGTCCA 60.323 55.000 3.72 0.00 32.50 4.02
565 708 0.815734 TTACGTGGCTGAGCTAGTCC 59.184 55.000 3.72 0.00 0.00 3.85
566 709 1.469423 GGTTACGTGGCTGAGCTAGTC 60.469 57.143 3.72 0.00 0.00 2.59
589 732 0.101579 GTCGTAGGCCTCTCAGAAGC 59.898 60.000 9.68 0.00 0.00 3.86
595 738 0.818296 ATGTGTGTCGTAGGCCTCTC 59.182 55.000 9.68 2.56 0.00 3.20
603 746 3.462483 AGGTTGTCAATGTGTGTCGTA 57.538 42.857 0.00 0.00 0.00 3.43
604 747 2.325583 AGGTTGTCAATGTGTGTCGT 57.674 45.000 0.00 0.00 0.00 4.34
605 748 3.390135 AGTAGGTTGTCAATGTGTGTCG 58.610 45.455 0.00 0.00 0.00 4.35
606 749 3.746492 GGAGTAGGTTGTCAATGTGTGTC 59.254 47.826 0.00 0.00 0.00 3.67
612 756 2.346803 CACCGGAGTAGGTTGTCAATG 58.653 52.381 9.46 0.00 43.00 2.82
614 758 0.682852 CCACCGGAGTAGGTTGTCAA 59.317 55.000 9.46 0.00 43.00 3.18
621 765 1.038130 CCTGAGTCCACCGGAGTAGG 61.038 65.000 9.46 4.34 35.20 3.18
624 768 1.606889 GACCTGAGTCCACCGGAGT 60.607 63.158 9.46 0.00 38.20 3.85
639 783 0.811616 CTAGCTGGCACGAATGGACC 60.812 60.000 0.00 0.00 0.00 4.46
744 893 2.417558 AAACTGCTGGGTGCCTCCTC 62.418 60.000 0.00 0.00 42.00 3.71
773 922 2.359107 CATGCGTGTCCAGTGGCT 60.359 61.111 3.51 0.00 0.00 4.75
791 940 1.661480 CAGGTCGTACGTCCAACCA 59.339 57.895 28.80 0.20 34.09 3.67
839 988 6.593807 CCCTCTAGCCGTGTAGTAGATATAT 58.406 44.000 0.00 0.00 0.00 0.86
840 989 5.628666 GCCCTCTAGCCGTGTAGTAGATATA 60.629 48.000 0.00 0.00 0.00 0.86
862 1011 4.825679 AGGAGGGGGTGCCTAGCC 62.826 72.222 0.00 0.00 43.86 3.93
868 1017 4.423209 AGGGAGAGGAGGGGGTGC 62.423 72.222 0.00 0.00 0.00 5.01
870 1019 1.949449 ATGAGGGAGAGGAGGGGGT 60.949 63.158 0.00 0.00 0.00 4.95
911 1060 2.035449 TCGGGATCGTGGTGAATATGAC 59.965 50.000 0.00 0.00 37.69 3.06
949 1098 3.475774 CGCCGTCAGGTGCGTTAC 61.476 66.667 0.00 0.00 45.43 2.50
1013 1165 3.057337 CCGTTTCACTCTCCGGGT 58.943 61.111 0.00 0.00 36.84 5.28
1098 1256 1.080230 GCAGAAGTCTCGCAGCAGA 60.080 57.895 0.00 0.00 0.00 4.26
1105 1263 0.891373 TTGAGGGAGCAGAAGTCTCG 59.109 55.000 0.00 0.00 0.00 4.04
1123 1281 1.525995 CCAGCGACACCCACTTGTT 60.526 57.895 0.00 0.00 0.00 2.83
1327 1485 3.152400 GATGGTCGCCCGGTACCT 61.152 66.667 10.90 5.00 36.67 3.08
1401 1559 2.526873 AGCGTCCACCCCTTGACT 60.527 61.111 0.00 0.00 0.00 3.41
1517 1678 7.816945 AGCGGAAAACAAGATCAAAATATTG 57.183 32.000 0.00 0.00 39.48 1.90
1519 1680 8.831715 AAAAGCGGAAAACAAGATCAAAATAT 57.168 26.923 0.00 0.00 0.00 1.28
1586 1747 6.531923 TGGAATTGCTTTGAATCAAAATGGA 58.468 32.000 9.85 0.00 32.75 3.41
1589 1750 7.169591 TCCATGGAATTGCTTTGAATCAAAAT 58.830 30.769 13.46 0.00 32.75 1.82
1749 1911 7.506938 ACCATCCTTTTATGCTGCTGTATATTT 59.493 33.333 0.00 0.00 0.00 1.40
1756 1918 5.300034 TGAATACCATCCTTTTATGCTGCTG 59.700 40.000 0.00 0.00 0.00 4.41
1758 1920 5.772825 TGAATACCATCCTTTTATGCTGC 57.227 39.130 0.00 0.00 0.00 5.25
1771 1933 5.134339 TCCCTAGAGCCAAATTGAATACCAT 59.866 40.000 0.00 0.00 0.00 3.55
1772 1934 4.476846 TCCCTAGAGCCAAATTGAATACCA 59.523 41.667 0.00 0.00 0.00 3.25
1797 1959 0.673333 TTAGCACGCAGGACCATGTG 60.673 55.000 0.00 0.01 36.74 3.21
1803 1965 3.552604 TTCATTTTTAGCACGCAGGAC 57.447 42.857 0.00 0.00 0.00 3.85
1859 2021 4.977963 CCATTTGAGTGTGACAATGAACAC 59.022 41.667 13.32 13.32 45.66 3.32
1871 2033 6.832520 TTTGCATATGTACCATTTGAGTGT 57.167 33.333 4.29 0.00 0.00 3.55
1894 2056 8.907222 AATGATTAAGTTTTTCACCTGCAAAT 57.093 26.923 0.00 0.00 0.00 2.32
1899 2061 8.490355 GCTCAAAATGATTAAGTTTTTCACCTG 58.510 33.333 0.00 0.00 0.00 4.00
1900 2062 8.424133 AGCTCAAAATGATTAAGTTTTTCACCT 58.576 29.630 0.00 0.00 0.00 4.00
1901 2063 8.593492 AGCTCAAAATGATTAAGTTTTTCACC 57.407 30.769 0.00 0.00 0.00 4.02
1910 2072 9.745880 ATTTCTGCATAGCTCAAAATGATTAAG 57.254 29.630 0.00 0.00 0.00 1.85
1915 2077 9.357652 GTTTTATTTCTGCATAGCTCAAAATGA 57.642 29.630 0.00 0.00 0.00 2.57
1924 2086 6.542852 TCGACTTGTTTTATTTCTGCATAGC 58.457 36.000 0.00 0.00 0.00 2.97
1925 2087 9.003112 CATTCGACTTGTTTTATTTCTGCATAG 57.997 33.333 0.00 0.00 0.00 2.23
1927 2089 6.308766 GCATTCGACTTGTTTTATTTCTGCAT 59.691 34.615 0.00 0.00 0.00 3.96
1931 2093 6.325919 TGGCATTCGACTTGTTTTATTTCT 57.674 33.333 0.00 0.00 0.00 2.52
1932 2094 7.401484 TTTGGCATTCGACTTGTTTTATTTC 57.599 32.000 0.00 0.00 0.00 2.17
1933 2095 7.440856 ACATTTGGCATTCGACTTGTTTTATTT 59.559 29.630 0.00 0.00 0.00 1.40
1936 2098 5.837437 ACATTTGGCATTCGACTTGTTTTA 58.163 33.333 0.00 0.00 0.00 1.52
1944 2106 3.181500 GGAGGTAACATTTGGCATTCGAC 60.181 47.826 0.00 0.00 41.41 4.20
1950 2112 6.865834 AATATTTGGAGGTAACATTTGGCA 57.134 33.333 0.00 0.00 41.41 4.92
1961 2123 9.582648 ACAAAGTTAAGTGTAATATTTGGAGGT 57.417 29.630 0.00 0.00 35.32 3.85
2006 2178 6.575267 TCTTGACAATTTTCATGCCATATGG 58.425 36.000 18.07 18.07 38.53 2.74
2019 2191 7.781056 AGTGTGGTAAATGTTCTTGACAATTT 58.219 30.769 0.00 0.00 42.62 1.82
2021 2193 6.959639 AGTGTGGTAAATGTTCTTGACAAT 57.040 33.333 0.00 0.00 42.62 2.71
2037 2209 8.018537 TGTGTAGATGCTTATATTAGTGTGGT 57.981 34.615 0.00 0.00 0.00 4.16
2050 2222 9.768662 AATTTCTGAAAATTTGTGTAGATGCTT 57.231 25.926 6.95 0.00 41.27 3.91
2129 2301 0.749454 CGGATTTTGGCTCCAGGGAG 60.749 60.000 11.06 11.06 44.56 4.30
2130 2302 1.302949 CGGATTTTGGCTCCAGGGA 59.697 57.895 0.00 0.00 32.72 4.20
2131 2303 2.418083 GCGGATTTTGGCTCCAGGG 61.418 63.158 0.00 0.00 32.72 4.45
2132 2304 2.764314 CGCGGATTTTGGCTCCAGG 61.764 63.158 0.00 0.00 32.72 4.45
2133 2305 1.982073 GACGCGGATTTTGGCTCCAG 61.982 60.000 12.47 0.00 32.72 3.86
2134 2306 2.033448 ACGCGGATTTTGGCTCCA 59.967 55.556 12.47 0.00 32.72 3.86
2135 2307 2.761195 GGACGCGGATTTTGGCTCC 61.761 63.158 12.47 0.00 0.00 4.70
2136 2308 2.761195 GGGACGCGGATTTTGGCTC 61.761 63.158 12.47 0.00 0.00 4.70
2137 2309 1.906105 TAGGGACGCGGATTTTGGCT 61.906 55.000 12.47 0.00 0.00 4.75
2138 2310 0.818040 ATAGGGACGCGGATTTTGGC 60.818 55.000 12.47 0.00 0.00 4.52
2139 2311 1.226746 GATAGGGACGCGGATTTTGG 58.773 55.000 12.47 0.00 0.00 3.28
2140 2312 1.226746 GGATAGGGACGCGGATTTTG 58.773 55.000 12.47 0.00 0.00 2.44
2141 2313 0.834612 TGGATAGGGACGCGGATTTT 59.165 50.000 12.47 0.00 0.00 1.82
2142 2314 0.834612 TTGGATAGGGACGCGGATTT 59.165 50.000 12.47 0.00 0.00 2.17
2143 2315 0.834612 TTTGGATAGGGACGCGGATT 59.165 50.000 12.47 0.00 0.00 3.01
2144 2316 0.834612 TTTTGGATAGGGACGCGGAT 59.165 50.000 12.47 0.00 0.00 4.18
2145 2317 0.834612 ATTTTGGATAGGGACGCGGA 59.165 50.000 12.47 0.00 0.00 5.54
2146 2318 2.536761 TATTTTGGATAGGGACGCGG 57.463 50.000 12.47 0.00 0.00 6.46
2147 2319 3.399330 ACATATTTTGGATAGGGACGCG 58.601 45.455 3.53 3.53 0.00 6.01
2148 2320 4.215613 GGAACATATTTTGGATAGGGACGC 59.784 45.833 0.00 0.00 0.00 5.19
2149 2321 4.451096 CGGAACATATTTTGGATAGGGACG 59.549 45.833 0.00 0.00 0.00 4.79
2150 2322 4.215613 GCGGAACATATTTTGGATAGGGAC 59.784 45.833 0.00 0.00 0.00 4.46
2151 2323 4.394729 GCGGAACATATTTTGGATAGGGA 58.605 43.478 0.00 0.00 0.00 4.20
2152 2324 3.188460 CGCGGAACATATTTTGGATAGGG 59.812 47.826 0.00 0.00 0.00 3.53
2153 2325 3.188460 CCGCGGAACATATTTTGGATAGG 59.812 47.826 24.07 0.00 0.00 2.57
2154 2326 3.188460 CCCGCGGAACATATTTTGGATAG 59.812 47.826 30.73 0.00 0.00 2.08
2155 2327 3.142951 CCCGCGGAACATATTTTGGATA 58.857 45.455 30.73 0.00 0.00 2.59
2156 2328 1.953686 CCCGCGGAACATATTTTGGAT 59.046 47.619 30.73 0.00 0.00 3.41
2157 2329 1.384525 CCCGCGGAACATATTTTGGA 58.615 50.000 30.73 0.00 0.00 3.53
2158 2330 0.248866 GCCCGCGGAACATATTTTGG 60.249 55.000 30.73 5.91 0.00 3.28
2159 2331 0.738389 AGCCCGCGGAACATATTTTG 59.262 50.000 30.73 6.52 0.00 2.44
2160 2332 1.944709 GTAGCCCGCGGAACATATTTT 59.055 47.619 30.73 3.57 0.00 1.82
2161 2333 1.140252 AGTAGCCCGCGGAACATATTT 59.860 47.619 30.73 4.34 0.00 1.40
2162 2334 0.756903 AGTAGCCCGCGGAACATATT 59.243 50.000 30.73 7.38 0.00 1.28
2163 2335 0.756903 AAGTAGCCCGCGGAACATAT 59.243 50.000 30.73 5.55 0.00 1.78
2164 2336 0.179094 CAAGTAGCCCGCGGAACATA 60.179 55.000 30.73 10.67 0.00 2.29
2165 2337 1.449601 CAAGTAGCCCGCGGAACAT 60.450 57.895 30.73 11.99 0.00 2.71
2166 2338 2.047655 CAAGTAGCCCGCGGAACA 60.048 61.111 30.73 7.71 0.00 3.18
2167 2339 2.818274 CCAAGTAGCCCGCGGAAC 60.818 66.667 30.73 21.21 0.00 3.62
2168 2340 4.770874 GCCAAGTAGCCCGCGGAA 62.771 66.667 30.73 9.00 0.00 4.30
2171 2343 4.451150 TCTGCCAAGTAGCCCGCG 62.451 66.667 0.00 0.00 0.00 6.46
2172 2344 2.820037 GTCTGCCAAGTAGCCCGC 60.820 66.667 0.00 0.00 0.00 6.13
2173 2345 0.392998 ATTGTCTGCCAAGTAGCCCG 60.393 55.000 0.00 0.00 36.25 6.13
2174 2346 1.065126 AGATTGTCTGCCAAGTAGCCC 60.065 52.381 0.00 0.00 36.25 5.19
2175 2347 2.409948 AGATTGTCTGCCAAGTAGCC 57.590 50.000 0.00 0.00 36.25 3.93
2176 2348 4.773323 AAAAGATTGTCTGCCAAGTAGC 57.227 40.909 0.00 0.00 36.25 3.58
2177 2349 6.650807 TGTCTAAAAGATTGTCTGCCAAGTAG 59.349 38.462 0.00 0.00 36.25 2.57
2178 2350 6.530120 TGTCTAAAAGATTGTCTGCCAAGTA 58.470 36.000 0.00 0.00 36.25 2.24
2179 2351 5.376625 TGTCTAAAAGATTGTCTGCCAAGT 58.623 37.500 0.00 0.00 36.25 3.16
2180 2352 5.947228 TGTCTAAAAGATTGTCTGCCAAG 57.053 39.130 0.00 0.00 36.25 3.61
2181 2353 7.994425 TTATGTCTAAAAGATTGTCTGCCAA 57.006 32.000 0.00 0.00 37.49 4.52
2182 2354 8.579850 AATTATGTCTAAAAGATTGTCTGCCA 57.420 30.769 0.00 0.00 0.00 4.92
2195 2367 9.639563 TGCCAATTCCTCATAATTATGTCTAAA 57.360 29.630 21.89 13.65 35.26 1.85
2196 2368 9.066892 GTGCCAATTCCTCATAATTATGTCTAA 57.933 33.333 21.89 15.05 35.26 2.10
2197 2369 7.387673 CGTGCCAATTCCTCATAATTATGTCTA 59.612 37.037 21.89 8.34 35.26 2.59
2198 2370 6.205464 CGTGCCAATTCCTCATAATTATGTCT 59.795 38.462 21.89 4.40 35.26 3.41
2199 2371 6.373779 CGTGCCAATTCCTCATAATTATGTC 58.626 40.000 21.89 5.43 35.26 3.06
2200 2372 5.241506 CCGTGCCAATTCCTCATAATTATGT 59.758 40.000 21.89 2.94 35.26 2.29
2201 2373 5.335897 CCCGTGCCAATTCCTCATAATTATG 60.336 44.000 17.82 17.82 35.04 1.90
2202 2374 4.766891 CCCGTGCCAATTCCTCATAATTAT 59.233 41.667 0.00 0.00 0.00 1.28
2203 2375 4.141287 CCCGTGCCAATTCCTCATAATTA 58.859 43.478 0.00 0.00 0.00 1.40
2204 2376 2.958355 CCCGTGCCAATTCCTCATAATT 59.042 45.455 0.00 0.00 0.00 1.40
2205 2377 2.174639 TCCCGTGCCAATTCCTCATAAT 59.825 45.455 0.00 0.00 0.00 1.28
2206 2378 1.562008 TCCCGTGCCAATTCCTCATAA 59.438 47.619 0.00 0.00 0.00 1.90
2207 2379 1.140852 CTCCCGTGCCAATTCCTCATA 59.859 52.381 0.00 0.00 0.00 2.15
2208 2380 0.107017 CTCCCGTGCCAATTCCTCAT 60.107 55.000 0.00 0.00 0.00 2.90
2209 2381 1.299648 CTCCCGTGCCAATTCCTCA 59.700 57.895 0.00 0.00 0.00 3.86
2210 2382 0.539986 TACTCCCGTGCCAATTCCTC 59.460 55.000 0.00 0.00 0.00 3.71
2211 2383 1.213296 ATACTCCCGTGCCAATTCCT 58.787 50.000 0.00 0.00 0.00 3.36
2212 2384 1.676006 CAATACTCCCGTGCCAATTCC 59.324 52.381 0.00 0.00 0.00 3.01
2213 2385 2.097466 CACAATACTCCCGTGCCAATTC 59.903 50.000 0.00 0.00 0.00 2.17
2214 2386 2.091541 CACAATACTCCCGTGCCAATT 58.908 47.619 0.00 0.00 0.00 2.32
2215 2387 1.004277 ACACAATACTCCCGTGCCAAT 59.996 47.619 0.00 0.00 33.89 3.16
2216 2388 0.398696 ACACAATACTCCCGTGCCAA 59.601 50.000 0.00 0.00 33.89 4.52
2217 2389 0.036765 GACACAATACTCCCGTGCCA 60.037 55.000 0.00 0.00 33.89 4.92
2218 2390 1.082117 CGACACAATACTCCCGTGCC 61.082 60.000 0.00 0.00 33.89 5.01
2219 2391 1.082117 CCGACACAATACTCCCGTGC 61.082 60.000 0.00 0.00 33.89 5.34
2220 2392 0.528924 TCCGACACAATACTCCCGTG 59.471 55.000 0.00 0.00 36.70 4.94
2221 2393 0.815734 CTCCGACACAATACTCCCGT 59.184 55.000 0.00 0.00 0.00 5.28
2222 2394 0.815734 ACTCCGACACAATACTCCCG 59.184 55.000 0.00 0.00 0.00 5.14
2223 2395 4.460948 TTTACTCCGACACAATACTCCC 57.539 45.455 0.00 0.00 0.00 4.30
2224 2396 5.519206 GTCATTTACTCCGACACAATACTCC 59.481 44.000 0.00 0.00 0.00 3.85
2225 2397 5.519206 GGTCATTTACTCCGACACAATACTC 59.481 44.000 0.00 0.00 0.00 2.59
2226 2398 5.046878 TGGTCATTTACTCCGACACAATACT 60.047 40.000 0.00 0.00 0.00 2.12
2227 2399 5.063060 GTGGTCATTTACTCCGACACAATAC 59.937 44.000 0.00 0.00 0.00 1.89
2228 2400 5.172934 GTGGTCATTTACTCCGACACAATA 58.827 41.667 0.00 0.00 0.00 1.90
2229 2401 4.000988 GTGGTCATTTACTCCGACACAAT 58.999 43.478 0.00 0.00 0.00 2.71
2230 2402 3.395639 GTGGTCATTTACTCCGACACAA 58.604 45.455 0.00 0.00 0.00 3.33
2231 2403 2.608506 CGTGGTCATTTACTCCGACACA 60.609 50.000 0.00 0.00 0.00 3.72
2232 2404 1.990563 CGTGGTCATTTACTCCGACAC 59.009 52.381 0.00 0.00 0.00 3.67
2233 2405 1.067425 CCGTGGTCATTTACTCCGACA 60.067 52.381 0.00 0.00 0.00 4.35
2234 2406 1.636988 CCGTGGTCATTTACTCCGAC 58.363 55.000 0.00 0.00 0.00 4.79
2235 2407 0.533491 CCCGTGGTCATTTACTCCGA 59.467 55.000 0.00 0.00 0.00 4.55
2236 2408 0.248289 ACCCGTGGTCATTTACTCCG 59.752 55.000 0.00 0.00 0.00 4.63
2237 2409 2.740904 GCTACCCGTGGTCATTTACTCC 60.741 54.545 0.00 0.00 37.09 3.85
2238 2410 2.547826 GCTACCCGTGGTCATTTACTC 58.452 52.381 0.00 0.00 37.09 2.59
2239 2411 1.208776 GGCTACCCGTGGTCATTTACT 59.791 52.381 0.00 0.00 37.09 2.24
2240 2412 1.208776 AGGCTACCCGTGGTCATTTAC 59.791 52.381 0.00 0.00 37.09 2.01
2241 2413 1.575419 AGGCTACCCGTGGTCATTTA 58.425 50.000 0.00 0.00 37.09 1.40
2242 2414 1.575419 TAGGCTACCCGTGGTCATTT 58.425 50.000 0.00 0.00 37.09 2.32
2243 2415 1.208776 GTTAGGCTACCCGTGGTCATT 59.791 52.381 0.00 0.00 37.09 2.57
2244 2416 0.828677 GTTAGGCTACCCGTGGTCAT 59.171 55.000 0.00 0.00 37.09 3.06
2245 2417 1.259840 GGTTAGGCTACCCGTGGTCA 61.260 60.000 0.00 0.00 37.09 4.02
2246 2418 1.519246 GGTTAGGCTACCCGTGGTC 59.481 63.158 0.00 0.00 37.09 4.02
2247 2419 2.353610 CGGTTAGGCTACCCGTGGT 61.354 63.158 20.99 1.14 40.16 4.16
2248 2420 2.497770 CGGTTAGGCTACCCGTGG 59.502 66.667 20.99 0.00 37.00 4.94
2249 2421 2.497770 CCGGTTAGGCTACCCGTG 59.502 66.667 25.88 15.17 40.10 4.94
2258 2430 1.384222 GCCAATGGAAGCCGGTTAGG 61.384 60.000 2.05 0.00 44.97 2.69
2259 2431 1.384222 GGCCAATGGAAGCCGGTTAG 61.384 60.000 2.05 0.00 39.87 2.34
2260 2432 1.379309 GGCCAATGGAAGCCGGTTA 60.379 57.895 2.05 0.00 39.87 2.85
2261 2433 2.679996 GGCCAATGGAAGCCGGTT 60.680 61.111 2.05 0.00 39.87 4.44
2266 2438 2.143876 TTCTAAGGGCCAATGGAAGC 57.856 50.000 6.18 0.00 0.00 3.86
2285 2457 3.121934 GGTCGGCCCGTTGTTTTT 58.878 55.556 1.63 0.00 0.00 1.94
2298 2470 4.697756 TGCTTCAAGGCCCGGTCG 62.698 66.667 0.00 0.00 0.00 4.79
2299 2471 3.056328 GTGCTTCAAGGCCCGGTC 61.056 66.667 0.00 0.00 0.00 4.79
2300 2472 4.660938 GGTGCTTCAAGGCCCGGT 62.661 66.667 0.00 0.00 0.00 5.28
2302 2474 4.659172 TGGGTGCTTCAAGGCCCG 62.659 66.667 0.00 0.00 43.89 6.13
2303 2475 2.203625 TTGGGTGCTTCAAGGCCC 60.204 61.111 0.00 0.00 41.42 5.80
2304 2476 1.228552 TCTTGGGTGCTTCAAGGCC 60.229 57.895 0.00 0.00 41.23 5.19
2305 2477 0.823356 TGTCTTGGGTGCTTCAAGGC 60.823 55.000 10.40 10.40 44.45 4.35
2306 2478 0.954452 GTGTCTTGGGTGCTTCAAGG 59.046 55.000 12.01 0.00 41.23 3.61
2307 2479 0.588252 CGTGTCTTGGGTGCTTCAAG 59.412 55.000 7.58 7.58 41.99 3.02
2308 2480 0.817634 CCGTGTCTTGGGTGCTTCAA 60.818 55.000 0.00 0.00 0.00 2.69
2309 2481 1.227823 CCGTGTCTTGGGTGCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
2310 2482 1.966451 CCCGTGTCTTGGGTGCTTC 60.966 63.158 0.00 0.00 42.07 3.86
2311 2483 2.113139 CCCGTGTCTTGGGTGCTT 59.887 61.111 0.00 0.00 42.07 3.91
2312 2484 3.953775 CCCCGTGTCTTGGGTGCT 61.954 66.667 0.00 0.00 45.86 4.40
2340 2512 3.506059 CTGTGAGATAGCCGGCCGG 62.506 68.421 40.26 40.26 38.57 6.13
2341 2513 2.028190 CTGTGAGATAGCCGGCCG 59.972 66.667 26.15 21.04 0.00 6.13
2342 2514 2.423446 CCTGTGAGATAGCCGGCC 59.577 66.667 26.15 8.19 0.00 6.13
2343 2515 2.280457 GCCTGTGAGATAGCCGGC 60.280 66.667 21.89 21.89 0.00 6.13
2344 2516 2.423446 GGCCTGTGAGATAGCCGG 59.577 66.667 0.00 0.00 35.30 6.13
2346 2518 2.423446 CCGGCCTGTGAGATAGCC 59.577 66.667 0.00 0.00 42.18 3.93
2347 2519 1.464376 TAGCCGGCCTGTGAGATAGC 61.464 60.000 26.15 0.00 0.00 2.97
2348 2520 0.315568 GTAGCCGGCCTGTGAGATAG 59.684 60.000 26.15 0.00 0.00 2.08
2349 2521 1.113517 GGTAGCCGGCCTGTGAGATA 61.114 60.000 26.15 2.64 0.00 1.98
2350 2522 2.435693 GGTAGCCGGCCTGTGAGAT 61.436 63.158 26.15 3.86 0.00 2.75
2351 2523 3.075005 GGTAGCCGGCCTGTGAGA 61.075 66.667 26.15 0.00 0.00 3.27
2352 2524 4.514577 CGGTAGCCGGCCTGTGAG 62.515 72.222 26.15 6.31 44.15 3.51
2377 2549 1.911702 AAGAGAGTTTAGGGCCGGGC 61.912 60.000 22.00 22.00 0.00 6.13
2378 2550 0.107654 CAAGAGAGTTTAGGGCCGGG 60.108 60.000 2.18 0.00 0.00 5.73
2379 2551 0.107654 CCAAGAGAGTTTAGGGCCGG 60.108 60.000 0.00 0.00 0.00 6.13
2380 2552 0.902531 TCCAAGAGAGTTTAGGGCCG 59.097 55.000 0.00 0.00 0.00 6.13
2381 2553 1.210722 CCTCCAAGAGAGTTTAGGGCC 59.789 57.143 0.00 0.00 41.47 5.80
2382 2554 2.093394 GTCCTCCAAGAGAGTTTAGGGC 60.093 54.545 0.00 0.00 41.47 5.19
2383 2555 2.166664 CGTCCTCCAAGAGAGTTTAGGG 59.833 54.545 0.00 0.00 41.47 3.53
2384 2556 2.417515 GCGTCCTCCAAGAGAGTTTAGG 60.418 54.545 0.00 0.00 41.47 2.69
2385 2557 2.417515 GGCGTCCTCCAAGAGAGTTTAG 60.418 54.545 0.00 0.00 41.47 1.85
2386 2558 1.549170 GGCGTCCTCCAAGAGAGTTTA 59.451 52.381 0.00 0.00 41.47 2.01
2387 2559 0.321996 GGCGTCCTCCAAGAGAGTTT 59.678 55.000 0.00 0.00 41.47 2.66
2388 2560 0.832135 TGGCGTCCTCCAAGAGAGTT 60.832 55.000 0.00 0.00 41.47 3.01
2389 2561 1.228894 TGGCGTCCTCCAAGAGAGT 60.229 57.895 0.00 0.00 41.47 3.24
2390 2562 1.216710 GTGGCGTCCTCCAAGAGAG 59.783 63.158 0.00 0.00 42.83 3.20
2391 2563 2.636412 CGTGGCGTCCTCCAAGAGA 61.636 63.158 0.00 0.00 37.74 3.10
2392 2564 1.949847 ATCGTGGCGTCCTCCAAGAG 61.950 60.000 4.89 0.00 45.25 2.85
2393 2565 0.681887 TATCGTGGCGTCCTCCAAGA 60.682 55.000 1.28 1.28 45.90 3.02
2394 2566 0.249073 CTATCGTGGCGTCCTCCAAG 60.249 60.000 0.00 0.00 37.96 3.61
2395 2567 1.672854 CCTATCGTGGCGTCCTCCAA 61.673 60.000 0.00 0.00 37.96 3.53
2396 2568 2.125326 CCTATCGTGGCGTCCTCCA 61.125 63.158 0.00 0.00 0.00 3.86
2397 2569 2.728817 CCTATCGTGGCGTCCTCC 59.271 66.667 0.00 0.00 0.00 4.30
2398 2570 2.728817 CCCTATCGTGGCGTCCTC 59.271 66.667 0.00 0.00 0.00 3.71
2399 2571 3.537874 GCCCTATCGTGGCGTCCT 61.538 66.667 0.00 0.00 39.48 3.85
2405 2577 0.469331 TGGAGTAGGCCCTATCGTGG 60.469 60.000 0.00 0.00 0.00 4.94
2406 2578 1.341531 CTTGGAGTAGGCCCTATCGTG 59.658 57.143 0.00 0.00 0.00 4.35
2407 2579 1.217183 TCTTGGAGTAGGCCCTATCGT 59.783 52.381 0.00 0.00 0.00 3.73
2408 2580 1.996798 TCTTGGAGTAGGCCCTATCG 58.003 55.000 0.00 0.00 0.00 2.92
2409 2581 2.037902 GCTTCTTGGAGTAGGCCCTATC 59.962 54.545 0.00 0.00 0.00 2.08
2410 2582 2.050918 GCTTCTTGGAGTAGGCCCTAT 58.949 52.381 0.00 0.00 0.00 2.57
2411 2583 1.497161 GCTTCTTGGAGTAGGCCCTA 58.503 55.000 0.00 0.00 0.00 3.53
2412 2584 1.275421 GGCTTCTTGGAGTAGGCCCT 61.275 60.000 0.00 0.00 33.15 5.19
2413 2585 1.224870 GGCTTCTTGGAGTAGGCCC 59.775 63.158 0.00 0.00 33.15 5.80
2414 2586 1.153349 CGGCTTCTTGGAGTAGGCC 60.153 63.158 0.00 0.00 35.29 5.19
2415 2587 1.153349 CCGGCTTCTTGGAGTAGGC 60.153 63.158 0.00 0.00 35.37 3.93
2416 2588 1.153349 GCCGGCTTCTTGGAGTAGG 60.153 63.158 22.15 0.00 0.00 3.18
2417 2589 1.153349 GGCCGGCTTCTTGGAGTAG 60.153 63.158 28.56 0.00 0.00 2.57
2418 2590 1.916273 TGGCCGGCTTCTTGGAGTA 60.916 57.895 28.56 0.00 0.00 2.59
2419 2591 3.249189 TGGCCGGCTTCTTGGAGT 61.249 61.111 28.56 0.00 0.00 3.85
2420 2592 2.747855 GTGGCCGGCTTCTTGGAG 60.748 66.667 28.56 0.00 0.00 3.86
2421 2593 4.697756 CGTGGCCGGCTTCTTGGA 62.698 66.667 28.56 0.00 0.00 3.53
2443 2615 1.446272 CGGCTTCTTGGAGTCGGTC 60.446 63.158 0.00 0.00 40.85 4.79
2444 2616 2.657237 CGGCTTCTTGGAGTCGGT 59.343 61.111 0.00 0.00 40.85 4.69
2446 2618 2.815647 GCCGGCTTCTTGGAGTCG 60.816 66.667 22.15 0.00 43.96 4.18
2447 2619 2.436824 GGCCGGCTTCTTGGAGTC 60.437 66.667 28.56 0.41 0.00 3.36
2448 2620 4.035102 GGGCCGGCTTCTTGGAGT 62.035 66.667 28.56 0.00 0.00 3.85
2449 2621 3.567579 TTGGGCCGGCTTCTTGGAG 62.568 63.158 28.56 0.00 0.00 3.86
2450 2622 3.567579 CTTGGGCCGGCTTCTTGGA 62.568 63.158 28.56 4.75 0.00 3.53
2451 2623 3.064324 CTTGGGCCGGCTTCTTGG 61.064 66.667 28.56 8.29 0.00 3.61
2452 2624 2.034066 TCTTGGGCCGGCTTCTTG 59.966 61.111 28.56 13.12 0.00 3.02
2453 2625 2.352805 CTCTTGGGCCGGCTTCTT 59.647 61.111 28.56 0.00 0.00 2.52
2454 2626 3.721706 CCTCTTGGGCCGGCTTCT 61.722 66.667 28.56 0.00 0.00 2.85
2455 2627 2.558380 AATCCTCTTGGGCCGGCTTC 62.558 60.000 28.56 19.29 34.39 3.86
2456 2628 2.616458 AATCCTCTTGGGCCGGCTT 61.616 57.895 28.56 6.12 34.39 4.35
2457 2629 3.017581 AATCCTCTTGGGCCGGCT 61.018 61.111 28.56 0.00 34.39 5.52
2458 2630 2.631012 ATCAATCCTCTTGGGCCGGC 62.631 60.000 21.18 21.18 34.39 6.13
2459 2631 0.106519 AATCAATCCTCTTGGGCCGG 60.107 55.000 0.00 0.00 34.39 6.13
2460 2632 1.312815 GAATCAATCCTCTTGGGCCG 58.687 55.000 0.00 0.00 34.39 6.13
2461 2633 1.697284 GGAATCAATCCTCTTGGGCC 58.303 55.000 0.00 0.00 45.56 5.80
2471 2643 1.312815 CCGGCCTCTTGGAATCAATC 58.687 55.000 0.00 0.00 34.57 2.67
2472 2644 0.753111 GCCGGCCTCTTGGAATCAAT 60.753 55.000 18.11 0.00 34.57 2.57
2473 2645 1.378514 GCCGGCCTCTTGGAATCAA 60.379 57.895 18.11 0.00 34.57 2.57
2474 2646 2.272146 GCCGGCCTCTTGGAATCA 59.728 61.111 18.11 0.00 34.57 2.57
2475 2647 2.517166 GGCCGGCCTCTTGGAATC 60.517 66.667 38.76 7.31 34.57 2.52
2476 2648 4.129148 GGGCCGGCCTCTTGGAAT 62.129 66.667 42.70 0.00 36.10 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.