>input_sequence_77309
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-------------------------------ATGGCGCCTCACGA------CCCGGAGAGTGAAACGGCGGCGCCCGAGT
GGCGCGGCACCGTGCGCGCCGCGGCGGCGGGGCCGACGCCCGACCAGGCGTGGGCTCTGCTGCGAGACTTCTGCTCCCTC
AACAAGTGGGTGTCGCTGGTGGAGACTTGCCGGAGGCTGGAAGGCGACGACGGCCGGCCCGGGTGCGTCCGGTACTGCGC
GGGGCCGGTGAACATGGCGGCGCCGGGGGAGGCGGTCGGCTGGTCCAAGGAGCGGCTCCTCGAGGTCGACGCCGCGGGGA
GGTCCTACAGCTACGAGGTGGTGGAGACCAACAAGGGGTTCGGCAGGTACCGGGCGACCATCGGCGTGGAGCCCGACCCG
GCCGGGTGCGCGGTCAGGTGGTCGTTCGAGGCCGATCCAGTCAAGGGGTGGACGCTGGAAGGCTTCGTGGGTTTCCTTGA
GAAGCTCGCGCATGGCGTCGCCAAGAGGCTTGAAGAGGAGATCATGGTGAACGTCGATGGTGATCCTGCT---TTGCCAA
TATTTTGA------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G318900
AGCTGAGATTATTGTGCTGCCAGCTCACTCCATGTGAAGGGGTTAGCCCGACAATAGAATCATTTGCTGGAGGTGGCAGC
CTGGATAAAAGGTGCACTAACCAGTCACTTGCAAAATTGC----------------------------------------
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-----AATGTTTACGCA-TGGACATCACATCAGCACATTAGTATCCGGTGTTGAACTAGCACG----------------A
TCAAAAGAGGCGGAAAGAGCAACGCATCATCTTCTCCCGTGACAGAACATGTGAGCTAGTATGCGCCTTTGCTTTTGTGG
AAGCGGGTATTCGACATGCATGAGCATATATACAAACCGTATACATCTGGTGCCACATCAAAAGCTGGACTAGCTCATCT
GGTTAATGAGATAAAGGATCTCATGAGGGAGAGGGAGTTTTTGTGTCTTCATATTAATCGAATGCAGAATAGGACTGCAG
ATCGTTTAGCCTATTTTTCAAGAATGAAACGCCGCACCAACTTGTGGTTGCAGGAGTCCGCAAATATCCTGGTTAGCTTG
CTGGCAAGCGATTGTACAACTATTCCTTAATAATAAAGCTCCTTTGATGTCGCAAAAAAAAAAAGCTGGACTAGCTCAGC
CACGTAACCCCGCTTCTGAGAGGCCTACG-ACACACATTGACAACCTACTCCGGTGGACTCAGGTCCATTCGTGCCAGCT
AGAGAGAATATGTTGACAATACACATGCAATCTTTATTTTATGGTTCACAA-GCCATGCAATGCAAGCAACGCGCGCATC
TAGCT----TGGGAGGAGGCACCCAGCAGTTTCCACCAGTCAGCCACTGGACACGCATGTGGTTGGACGTACGACCTGCC
AACTAATCCTCTCGCGGGTCACGTTGTATATATCTACTACACGGCTAGAGGGCTAGGCACCCCCTCCTCTCCCTCATGAG
TCGTGACCCTCGGTTCCTCGTCATATTCACCACGATCCCGAGGTTGCACTTGCACGAGTAACGCACCTGACGGCGACACT
AGCGATCTAGCTGCGCAGGCGCC---GGCACATGGCGCCTCACGA------CCCGGAGAGTGAAACGGCGGCGCCCGAGT
GGCGCGGCACCGTGCGCGCCGCGGCGGCGGGGCCGACGCCCGACCAGGCGTGGGCTCTGCTGCGAGACTTCTGCTCCCTC
AACAAGTGGGTGTCGCTGGTGGAGACTTGCCGGAGGCTGGAAGGCGACGACGGCCGGCCCGGGTGCGTCCGGTACTGCGC
GGGGCCGGTGAACATGGCGGCGCCGGGGGAGGCGGTCGGCTGGTCCAAGGAGCGGCTCCTCGAGGTCGACGCCGCGGGGA
GGTCCTACAGCTACGAGGTGGTGGAGACCAACAAGGGGTTCGGCAGGTACCGGGCGACCATCGGCGTGGAGCCCGACCCG
GCCGGGTGCGCGGTCAGGTGGTCGTTCGAGGCCGATCCAGTCAAGGGGTGGACGCTGGAAGGCTTCGTGGGTTTCCTTGA
GAAGCTCGCGCATGGCGTCGCCAAGAGGCTTGAAGAGGAGATCATGGTGAACGTCGATGGTGATCCTGCT---TTGCCAA
TATTTTGATCTTGTTTTCCGCTTTTCCTAGTGATACTGGCGACAGTATGTTCGATCACAAGTCCATTCCATTTTGATTCA
AAGCAATTCCATGGAAATTTTGGAGAACTCTACTTGGGAAATTTTCTTCTAGAGATACTTTGATTTGTTTGAAGTTAGAA
CTACCGAAAATATGTTCTAAA-AAAAACTATATATGATACATGGCCTGTGTGGTAAGCTATCTTAAAATTAAATATACAG
CAGCATAAAAGGATGGTATTCAATTTGGCTCTAGGGAGCACATGGTCCTGCGTGCTAAAAATGAATTTTACAAATGTCAA
AAAAACTTGAAAAAATAGATGTGTTCATTGTCACACTCAAATGGTACATATGCAAATTTGCAGGTGAAAAACTTAATCAT
TTTGAGCTATGCAGAAATAAAACAAGTCGAATGCCAAATGTTACCTCCAAATATTACACTTAACTTTGTTTTTT------
----AAGCACTGCTATCCCATATGGCATGAAAATTGTCAAGAACATTTACCACACTAATATAAGCATCTACACAAATTTT
CAGAAATTTAAAATTTAAAATTTATTTATTTTAATTTTACTATTTATTAGGGAGCATATGCTCCCTGGAGCCAAAATCCG
CGTCCCTATCCAAAATATGTTCCGCGGGCTACTTGGCAGACAATCTTTTAGACATAATTATGAGGAATTGGCACGGGAGT
ATTGTGTCGGAGTAAATGACCACGGGTAGCCTAACCGGCTTCCATTGGCCCTTAGAAAAAACAACGGGCCGACCGGGCCT
TGAAGCACCCAAGACACGGGGCCGCCTTCCTCCGGCCGGCTATCTCACAGGCCGGCTACCGGAAGGCGGCCCGGCCCTAA
ACTCTCTTGGAGGACGCCACGATAGGGCCTACTCCAAGAAGCCGGCCACGGAAGGACCGACTCCAAGAAGCCGGCCCAAG
AGGATTGATTCCAAGAGGCCGGCCCCAGGCAGGCAGGCAGGGGCCGTGCCCTAAAGGTC
>chr3A_1
AGCTGAGATTATTGTGCTGCCAGCTCACTCCATGTGGAGGGGTTAGCCCAACAATTGAATCATTTTCTGGAGGTGGCAGC
CTGGATAAAAGGTGCACTGACCAGTCACTTACAAAATTGT----------------------------------------
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-----AATGTTTACGCATTGGACATCACATCAGCACATTAGTACCCGGTGCTGAACTGGCACG----------------A
TCAAAAGAGGCGGAAAGAGCAACGCATCATCTTCTCCCGTGACAGAACATGTGAGCTAGTATGCGCCTTTGCTTT--TGG
AAGCGGGTATTCGACATGCATGAGCATATATACAAACCGTATACATCTGGTGCCACATCAAAAGCTGGCAAAATTTAAG-
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-----------------------------------------------------------------------TAGCCCAGC
CACGTAACCCCACTTCTAAGAGGCCCTACAACACAAAGTGACAAGCTTCTCCCGTGGACTCATGTCCATTCGTGCCAGCT
AGAGAGAATATGTTGACAATACACATGCA--CTTTATTTTATGGTTCACAA-GCCATGCAATGCAAGCAGCGCGCGCATC
TAGCTAAGCTGGTAGGAGGCACCCAGCAGTTTCCACCAGTCCGCCACTGGACACGCATGCGGTTGGACGTACGACCTGCC
AACTAATCCTCTCGCGGGTCACGTTGT--GTATCTACTACACGGCTGGTGAGCTAGACGCCCCCTCCTCTCCCTCACGAG
TCGTGACCCTCAGTTCCTCATCATATTCACCACGATCCCGACGTTGCACTTGCACGAATCACGCACCTGACGGCGACACC
CGCGATCTAGCTGCCCAGGCGCC---GGCACATGGCGCCTCACGGTCACGGCCCGGACAGTGAAACGGCGGCGCCCGAGT
GGCGCGGCACCGTGCGCGCCGCGGCGGCGGGGCCGACGCCCGACCAGGCGTGGGCCCTGCTGGGAGACTTCTGCTCCCTC
GACAAGTGGGTGTCGCTGGTGCAGACGTGCCGGAGGCTGGAGGGCGACGACGGCCGGCCCGGGTGCGTCCGGTACTGCGC
GGGGCCGGTGAACATGGCGGCGCCGGGGGAGGCGGTCGGCTGGTCCAAGGAGCGGCTCCTCGAGGTCGACGCCGCGGGGC
GGTCCTACAGCTACGAGGTGGTGGAGACCAACAAGGGGTTCGGCCGGTACCGGGCGACCATCGGCGTGGAGCCCGACCCG
GCCGGGTGCGCGGTCAGGTGGTCGTTCGAGGCCGATCCCGTCGAGGGGTGGACGCTGGAAGGCTTCGTGGGTTTCCTGGA
GAAGCTCGCGCATGGCGTCGCCAAGAGGCTCGAAGAGGAGATCATGGCGAACGTCGATGGTGATCCTGCTGCTTTGCGAG
TATTTTGATCTTGATTTCCGCTTGTCCTAGTGATACTGGCGACAGTATGTTCGATCACAAGTCCATGCCCTTTTGATTCA
AAGCAATTTCATGGAAATTTTGGAGAACTTTACTTGGAAAATTTGCTTCTAGATATTCTTTGATTTGTTTAAATTTAGAA
CTATCGAAAAGATCTTCTAA--AAAAACTATATATGATACATGCCCTATGTGGTAAGTTACCATAAATTC-AATATATAC
CAGCATAAAAGGCGGATATTCAATTTGGCTCTAGGGAGTACATGATCCTGCATGCTAAAAATGAATTTTTACAAATGATT
TTTTTTGA-AAAAAATAGATATGTTCATTGTCGCACCCAAATGGTACAT--GCAATTTTGTTAGTGAAAAAGTTAAGCAT
TTTGACTTGTGC---AAAAAAACAAATCGAACGCCAAATG-------------TTACACTTAATTTTGTTTTTTTTCACC
GACAAAGCACTGCTATCTCATATGGCATGAGACTTGTCAAGCGCACTTGCCACACTAATATGAACATCTAAAAAAAATCA
GAATT-TTTAAAATTTA---------------------------------------------------------------
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>chr3D_1
AGCTGAGATTATTGTGCTGCCAGCTCACTCCATGTGGAGGGGTTAGCCCAACAATAGAATCATTTTCTAGAGCTGGTAGC
CTGGATAAAACGTGCACTGACCAGTCACTTGCAAAATTGTACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGAATAA
AAGAGGATGTATCCAGATGTATTTTAGTTCTAGATACATCTCTTTTTATCCACTTTGATGACAAGTATTTTTGGGCGGAG
GAAGTAATGTTTATGCA-TGGACATCACATCAGCACATTAGTACCCGGTGTTGAACTGGCACGATCAAAAGAGACGGAAA
TCAAAAGAGACGGAAAGAGCAACGCATCATCTTCTCCCGTGACAGAACATGTGAGCTAGTATGCGCCTTTGCTTTTGTGG
AAGCGGGTATTCGACATGCATGAGCATATATACAAACCGTATACATCTGGTGCCACATCAAAAGCTGG------------
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---------------------------------------------------------------------ACTAGCTCAGC
CACGTAACCCCACTTCTAAGAGGCCCTACAACACAAAGTGACAAGCTTCTCCCGTGGACTCATGTCCATTCGCGCCAGCT
AGAGAGAATATGTTGACAATACACATGCAAT--TTATTTTATGGTTCACAAAGCCATGCAAGGCAAGCAACGCTCGC---
----------------AGGCACCCAGCAGTTTCCACCAGTCCGCCACTGGACACGCATGCGCTTGGACGTACGACCTGCC
AACTAATCCTCTCGCGGGTCACGTTGT--ATATCTACTACACGGCTAGTGAGCTACACGCCCCCTCCTCTCCCTCATGAG
TCGTGACCCTCGGTTCCTCATCATATTCACCACGATCCCGACGTTGCACTTGCACGATTCACACACCTGACGGCGACACT
CGCGATCTAGCTGCGCAGGCGCCGGCGGCACATGGCGCCTCACGG------GCCGGACGGTGAGA---CGGCGCCCGAGT
GGCGCGGCACCGTGCGCGCCGCGGCGGCGGGGCCGACGCCCGACCAGGCGTGGGCCCTGCTGGGAGACTTCTGCTCCCTC
GACAAGTGGGTGTCGCTGGTGCAGACGTGCCGGAGGCTGGAGGGCGACGATGGCCAGCCGGGGTGCGTCCGGTACTGCGC
GGGGCCGGTGAACATGGCGGCGCCGGGGGAGGCGGTCGGCTGGTCCAAGGAGCGGCTCCTCGAGGTCGACGCCGCGGGGA
GGTCCTACAGCTACGAGGTGGTGGAGACCAACAAGGGGTTCGGCCGGTACCGGGCGACCATCGGCGTGCAGCCCGACCCG
GCCGGGTGCGCGGTCAGGTGGTCGTTCGAGGCCGATCCCGTGAAGGGGTGGACGCTGGAAGGCTTCGTGGGTTTCCTGGA
GAAGCTCGCGCATGGCGTCGCCAAGAGGCTTGAAGAGGAGATCATGGTGAACGTCGATGGTGATCCTGCTGCTTTGCGAG
TATTTTGATCATGTTTTCGGCTTTTCCTAGT--TACTGGTGACAGTATGCTCGA-CACGAGTCCATACCCTTTTGATTCA
AAGCAATTCCACGAAAATTTAGGAGAACTCTACTTGGAAAATTTTCTTCTAGAGATTCTTTGATTTGTTTGAAGTTATAA
CTATCGAAAAGATGTTCTAAAGAAAAACTATATATGCTACATGGCCTGTGTGGTAAGCTATCTTAAAATTCAAT------
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>SNPs
------------------------------------S------------S---------------S--------------
------------------S--------------------S----------------------------------------
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-------------------------------------------S-------------S----------------------
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--------------------------------------------------------------------SSS-SS-S-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-----------S-----S-------SSSS------S-S------S--S----S---------S-----------------
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------------S----------------------------S-----------------S--------------------
---------------------------SS-------------------S-S-----S-S---------------------
-------------------S---------------------S---------------S-S--------------------
S-------------------------------------------S------------S----------------------
-------------------------------------------------------S------S-----------------
S--------------------S----S--------------S--------------------------------------
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--------------------------------------------S-----------------------------------
--------------------------------------S--------------------------------------S--
-----------------------------------------------------------------------------S-S
------------------------------------------------------------------S--S----------
-------------------------------------S------------------S-----------------------
---S------S-----------------------------------------------------------S------S-S
------------SS-S----------------------S-----S------S-----------------SSS--SSSSSS
SSSSSSSSS-----------S-----------S---S------------SS----S----SSS--------S----S---
-----SS-S---SSS--S-------S-----S--------SSSSSSSSSSSSS----------S----------------
-----------------S------------S-S--------SS--S--S------------S-S------S-S---S-SS
S-SSSS-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_756
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----------------CTGAGAGGCCTACGACACAC--------------------------------------------
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>reverse_2389
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--------------------------------------------------------------------TGGCACGGGAGT
ATTGTGTC------------------------------------------------------------------------
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