Multiple sequence alignment - TraesCS3B01G305700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G305700 chr3B 100.000 4281 0 0 1 4281 491366588 491370868 0.000000e+00 7906.0
1 TraesCS3B01G305700 chr3B 83.966 237 32 5 3809 4042 493121873 493121640 5.570000e-54 222.0
2 TraesCS3B01G305700 chr3B 100.000 60 0 0 1 60 491362360 491362419 1.260000e-20 111.0
3 TraesCS3B01G305700 chr3D 94.479 3170 100 35 607 3750 376813879 376816999 0.000000e+00 4815.0
4 TraesCS3B01G305700 chr3D 86.902 481 49 7 1 472 376813344 376813819 1.050000e-145 527.0
5 TraesCS3B01G305700 chr3D 84.434 212 31 2 3818 4027 340338391 340338180 1.560000e-49 207.0
6 TraesCS3B01G305700 chr3D 96.296 81 3 0 522 602 376813820 376813900 2.690000e-27 134.0
7 TraesCS3B01G305700 chr3D 91.011 89 3 2 4198 4281 376819624 376819712 9.730000e-22 115.0
8 TraesCS3B01G305700 chr3D 96.000 50 2 0 4189 4238 376819508 376819557 9.870000e-12 82.4
9 TraesCS3B01G305700 chr3A 94.877 2518 90 18 1015 3520 501221320 501223810 0.000000e+00 3899.0
10 TraesCS3B01G305700 chr3A 88.636 572 30 14 377 925 501220362 501220921 0.000000e+00 664.0
11 TraesCS3B01G305700 chr3A 89.205 176 9 7 3577 3752 501224138 501224303 1.210000e-50 211.0
12 TraesCS3B01G305700 chr3A 92.157 153 6 2 4133 4281 501224608 501224758 1.210000e-50 211.0
13 TraesCS3B01G305700 chr7D 84.884 258 33 5 3800 4052 339118826 339118570 5.490000e-64 255.0
14 TraesCS3B01G305700 chr5D 84.746 236 31 5 3810 4042 382871964 382871731 9.260000e-57 231.0
15 TraesCS3B01G305700 chr7B 82.946 258 36 7 3801 4052 284149232 284148977 4.310000e-55 226.0
16 TraesCS3B01G305700 chr7B 81.743 241 37 7 3810 4045 45843388 45843150 1.210000e-45 195.0
17 TraesCS3B01G305700 chr7B 89.583 48 2 3 3574 3621 479780544 479780588 1.660000e-04 58.4
18 TraesCS3B01G305700 chr1D 83.966 237 35 3 3810 4044 464601407 464601172 1.550000e-54 224.0
19 TraesCS3B01G305700 chr6B 83.544 237 34 5 3810 4042 439062091 439062326 2.590000e-52 217.0
20 TraesCS3B01G305700 chr6B 100.000 28 0 0 3594 3621 34926574 34926601 8.000000e-03 52.8
21 TraesCS3B01G305700 chr2D 81.481 243 36 9 3809 4046 637678336 637678098 1.570000e-44 191.0
22 TraesCS3B01G305700 chr6A 94.286 35 2 0 185 219 421101684 421101718 2.000000e-03 54.7
23 TraesCS3B01G305700 chr1B 96.970 33 0 1 3594 3625 509151088 509151056 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G305700 chr3B 491366588 491370868 4280 False 7906.00 7906 100.00000 1 4281 1 chr3B.!!$F2 4280
1 TraesCS3B01G305700 chr3D 376813344 376819712 6368 False 1134.68 4815 92.93760 1 4281 5 chr3D.!!$F1 4280
2 TraesCS3B01G305700 chr3A 501220362 501224758 4396 False 1246.25 3899 91.21875 377 4281 4 chr3A.!!$F1 3904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.104304 AATACCGATGACCAGCGACC 59.896 55.0 9.36 0.0 43.75 4.79 F
975 1033 0.107654 CCCTTCCTTCGCTTCGGATT 60.108 55.0 0.00 0.0 0.00 3.01 F
978 1036 0.107848 TTCCTTCGCTTCGGATTCCC 60.108 55.0 0.00 0.0 0.00 3.97 F
2752 3163 0.187117 TCATGCCCACCTCAACCAAA 59.813 50.0 0.00 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 2028 0.458716 GTGCCTCGACTAACAGAGCC 60.459 60.0 0.00 0.0 33.39 4.70 R
2834 3245 0.535780 CAACAGTTGCAGGGCTCTCA 60.536 55.0 0.00 0.0 0.00 3.27 R
2948 3359 2.559668 CCCTACTACACTGGTCGTTTCA 59.440 50.0 0.00 0.0 0.00 2.69 R
3996 4740 0.033601 TTAAGCATGGCAACCCGGAT 60.034 50.0 0.73 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.194005 ACAACTGTGACATCCGTTCTT 57.806 42.857 0.00 0.00 0.00 2.52
47 48 1.440850 CGCCAGCGTGACAAACATG 60.441 57.895 3.35 0.00 38.43 3.21
80 81 6.469782 AAACACCATCTTTCACACATCTTT 57.530 33.333 0.00 0.00 0.00 2.52
81 82 5.695851 ACACCATCTTTCACACATCTTTC 57.304 39.130 0.00 0.00 0.00 2.62
85 86 6.639686 CACCATCTTTCACACATCTTTCAAAG 59.360 38.462 0.00 0.00 0.00 2.77
131 132 0.673956 GACAAGACGGGAAGGCCTTC 60.674 60.000 33.67 33.67 38.80 3.46
150 151 1.375853 CTTCCATTTCGATGGCGGCA 61.376 55.000 16.34 16.34 41.43 5.69
172 173 2.440539 ATCGCCTCAATACCGATGAC 57.559 50.000 0.00 0.00 39.89 3.06
173 174 0.387929 TCGCCTCAATACCGATGACC 59.612 55.000 0.00 0.00 0.00 4.02
176 177 1.871080 CCTCAATACCGATGACCAGC 58.129 55.000 0.00 0.00 0.00 4.85
180 181 0.104304 AATACCGATGACCAGCGACC 59.896 55.000 9.36 0.00 43.75 4.79
185 186 0.806102 CGATGACCAGCGACCGAAAT 60.806 55.000 0.96 0.00 43.75 2.17
226 228 1.993391 ACCCTACCATCACCACGGG 60.993 63.158 0.00 0.00 37.70 5.28
228 230 1.559065 CCCTACCATCACCACGGGTT 61.559 60.000 0.00 0.00 36.14 4.11
229 231 0.107848 CCTACCATCACCACGGGTTC 60.108 60.000 0.00 0.00 36.14 3.62
238 240 1.277440 CCACGGGTTCGAAACAACG 59.723 57.895 16.38 12.74 40.11 4.10
245 247 1.302366 GTTCGAAACAACGGGGTCTT 58.698 50.000 0.00 0.00 0.00 3.01
247 249 0.464870 TCGAAACAACGGGGTCTTGA 59.535 50.000 0.00 0.00 0.00 3.02
250 252 0.549469 AAACAACGGGGTCTTGACCT 59.451 50.000 17.99 0.00 0.00 3.85
285 294 4.986708 GGCAAACGAAGGGGCCCA 62.987 66.667 27.72 0.00 40.55 5.36
289 298 0.684153 CAAACGAAGGGGCCCATGAT 60.684 55.000 27.72 0.62 0.00 2.45
311 320 3.012959 TCTCACCAGGGAGAAGGTAGATT 59.987 47.826 0.00 0.00 40.81 2.40
313 322 1.840635 ACCAGGGAGAAGGTAGATTGC 59.159 52.381 0.00 0.00 36.07 3.56
315 324 1.141858 CAGGGAGAAGGTAGATTGCCC 59.858 57.143 0.00 0.00 0.00 5.36
362 371 2.360854 CCCCAAGAGAGGAAGGAGGTAT 60.361 54.545 0.00 0.00 0.00 2.73
366 375 4.657969 CCAAGAGAGGAAGGAGGTATGAAT 59.342 45.833 0.00 0.00 0.00 2.57
369 378 6.493189 AGAGAGGAAGGAGGTATGAATTTC 57.507 41.667 0.00 0.00 0.00 2.17
372 381 4.770795 AGGAAGGAGGTATGAATTTCACG 58.229 43.478 0.15 0.00 0.00 4.35
373 382 3.877508 GGAAGGAGGTATGAATTTCACGG 59.122 47.826 0.15 0.00 0.00 4.94
374 383 4.514401 GAAGGAGGTATGAATTTCACGGT 58.486 43.478 0.15 0.00 0.00 4.83
375 384 4.569719 AGGAGGTATGAATTTCACGGTT 57.430 40.909 0.15 0.00 0.00 4.44
384 393 5.688348 TGAATTTCACGGTTTGTTTTTCG 57.312 34.783 0.00 0.00 0.00 3.46
390 399 3.000122 TCACGGTTTGTTTTTCGTAGACG 60.000 43.478 0.00 0.00 34.32 4.18
453 463 1.135527 GGATCACCGTGATACCGACAA 59.864 52.381 14.09 0.00 37.20 3.18
479 490 0.885879 TATGCTACTGATACCGGCCG 59.114 55.000 21.04 21.04 0.00 6.13
485 496 1.069765 CTGATACCGGCCGCATCTT 59.930 57.895 27.83 10.74 0.00 2.40
498 509 1.818060 CGCATCTTCCCATCAAAACCA 59.182 47.619 0.00 0.00 0.00 3.67
503 514 3.221771 TCTTCCCATCAAAACCAGTGTG 58.778 45.455 0.00 0.00 0.00 3.82
504 515 1.993956 TCCCATCAAAACCAGTGTGG 58.006 50.000 0.00 0.00 45.02 4.17
508 519 2.158986 CCATCAAAACCAGTGTGGCAAA 60.159 45.455 0.00 0.00 42.67 3.68
510 521 1.135257 TCAAAACCAGTGTGGCAAACG 60.135 47.619 1.33 0.00 42.67 3.60
511 522 0.459411 AAAACCAGTGTGGCAAACGC 60.459 50.000 1.33 0.00 42.67 4.84
512 523 1.599606 AAACCAGTGTGGCAAACGCA 61.600 50.000 1.33 0.00 42.67 5.24
514 525 2.186160 CCAGTGTGGCAAACGCAGA 61.186 57.895 1.33 0.00 42.06 4.26
515 526 1.009675 CAGTGTGGCAAACGCAGAC 60.010 57.895 1.33 0.00 42.06 3.51
516 527 2.186826 AGTGTGGCAAACGCAGACC 61.187 57.895 1.33 0.00 42.06 3.85
519 530 2.115052 TGGCAAACGCAGACCCAT 59.885 55.556 0.00 0.00 0.00 4.00
520 531 1.971167 TGGCAAACGCAGACCCATC 60.971 57.895 0.00 0.00 0.00 3.51
560 584 0.387239 CACGCACATGACTCACGAGA 60.387 55.000 0.00 0.00 0.00 4.04
561 585 0.528017 ACGCACATGACTCACGAGAT 59.472 50.000 0.00 0.00 0.00 2.75
598 652 1.760086 CTGCACCCAACCCAACCAA 60.760 57.895 0.00 0.00 0.00 3.67
599 653 1.306141 TGCACCCAACCCAACCAAA 60.306 52.632 0.00 0.00 0.00 3.28
600 654 1.145156 GCACCCAACCCAACCAAAC 59.855 57.895 0.00 0.00 0.00 2.93
601 655 1.826709 CACCCAACCCAACCAAACC 59.173 57.895 0.00 0.00 0.00 3.27
602 656 1.383386 ACCCAACCCAACCAAACCC 60.383 57.895 0.00 0.00 0.00 4.11
603 657 1.383248 CCCAACCCAACCAAACCCA 60.383 57.895 0.00 0.00 0.00 4.51
604 658 0.983378 CCCAACCCAACCAAACCCAA 60.983 55.000 0.00 0.00 0.00 4.12
605 659 0.467804 CCAACCCAACCAAACCCAAG 59.532 55.000 0.00 0.00 0.00 3.61
606 660 0.179059 CAACCCAACCAAACCCAAGC 60.179 55.000 0.00 0.00 0.00 4.01
607 661 0.326143 AACCCAACCAAACCCAAGCT 60.326 50.000 0.00 0.00 0.00 3.74
608 662 1.048160 ACCCAACCAAACCCAAGCTG 61.048 55.000 0.00 0.00 0.00 4.24
609 663 0.758685 CCCAACCAAACCCAAGCTGA 60.759 55.000 0.00 0.00 0.00 4.26
610 664 0.389025 CCAACCAAACCCAAGCTGAC 59.611 55.000 0.00 0.00 0.00 3.51
611 665 0.389025 CAACCAAACCCAAGCTGACC 59.611 55.000 0.00 0.00 0.00 4.02
612 666 0.759060 AACCAAACCCAAGCTGACCC 60.759 55.000 0.00 0.00 0.00 4.46
613 667 2.268076 CCAAACCCAAGCTGACCCG 61.268 63.158 0.00 0.00 0.00 5.28
614 668 1.228124 CAAACCCAAGCTGACCCGA 60.228 57.895 0.00 0.00 0.00 5.14
615 669 0.821711 CAAACCCAAGCTGACCCGAA 60.822 55.000 0.00 0.00 0.00 4.30
616 670 0.822121 AAACCCAAGCTGACCCGAAC 60.822 55.000 0.00 0.00 0.00 3.95
617 671 2.359975 CCCAAGCTGACCCGAACC 60.360 66.667 0.00 0.00 0.00 3.62
618 672 2.429930 CCAAGCTGACCCGAACCA 59.570 61.111 0.00 0.00 0.00 3.67
619 673 1.228124 CCAAGCTGACCCGAACCAA 60.228 57.895 0.00 0.00 0.00 3.67
620 674 1.515521 CCAAGCTGACCCGAACCAAC 61.516 60.000 0.00 0.00 0.00 3.77
621 675 1.228154 AAGCTGACCCGAACCAACC 60.228 57.895 0.00 0.00 0.00 3.77
622 676 1.990160 AAGCTGACCCGAACCAACCA 61.990 55.000 0.00 0.00 0.00 3.67
700 757 4.925861 GGCGATCTCCCTGCTGGC 62.926 72.222 3.63 0.00 0.00 4.85
718 775 1.598601 GGCCGTCAGTAAACAAACGAA 59.401 47.619 8.34 0.00 37.31 3.85
729 786 1.298041 CAAACGAACACGGCCACAC 60.298 57.895 2.24 0.00 0.00 3.82
730 787 1.745864 AAACGAACACGGCCACACA 60.746 52.632 2.24 0.00 0.00 3.72
775 832 4.003788 CCGAAGTCCACCCACGCT 62.004 66.667 0.00 0.00 0.00 5.07
876 934 1.684386 CGCTCCTCTGATTGGCCTCT 61.684 60.000 3.32 0.00 0.00 3.69
925 983 1.646189 CCGCTTTGCTTCTACTCCTC 58.354 55.000 0.00 0.00 0.00 3.71
926 984 1.205893 CCGCTTTGCTTCTACTCCTCT 59.794 52.381 0.00 0.00 0.00 3.69
927 985 2.535331 CGCTTTGCTTCTACTCCTCTC 58.465 52.381 0.00 0.00 0.00 3.20
928 986 2.094494 CGCTTTGCTTCTACTCCTCTCA 60.094 50.000 0.00 0.00 0.00 3.27
929 987 3.258228 GCTTTGCTTCTACTCCTCTCAC 58.742 50.000 0.00 0.00 0.00 3.51
930 988 3.056179 GCTTTGCTTCTACTCCTCTCACT 60.056 47.826 0.00 0.00 0.00 3.41
931 989 4.743493 CTTTGCTTCTACTCCTCTCACTC 58.257 47.826 0.00 0.00 0.00 3.51
973 1031 2.656069 CCCCTTCCTTCGCTTCGGA 61.656 63.158 0.00 0.00 0.00 4.55
974 1032 1.522569 CCCTTCCTTCGCTTCGGAT 59.477 57.895 0.00 0.00 0.00 4.18
975 1033 0.107654 CCCTTCCTTCGCTTCGGATT 60.108 55.000 0.00 0.00 0.00 3.01
976 1034 1.291132 CCTTCCTTCGCTTCGGATTC 58.709 55.000 0.00 0.00 0.00 2.52
977 1035 1.291132 CTTCCTTCGCTTCGGATTCC 58.709 55.000 0.00 0.00 0.00 3.01
978 1036 0.107848 TTCCTTCGCTTCGGATTCCC 60.108 55.000 0.00 0.00 0.00 3.97
979 1037 0.976073 TCCTTCGCTTCGGATTCCCT 60.976 55.000 0.00 0.00 0.00 4.20
980 1038 0.530870 CCTTCGCTTCGGATTCCCTC 60.531 60.000 0.00 0.00 0.00 4.30
981 1039 0.530870 CTTCGCTTCGGATTCCCTCC 60.531 60.000 0.00 0.00 41.07 4.30
982 1040 1.968050 TTCGCTTCGGATTCCCTCCC 61.968 60.000 0.00 0.00 41.49 4.30
985 1043 0.250510 GCTTCGGATTCCCTCCCATC 60.251 60.000 0.00 0.00 41.49 3.51
988 1046 2.883828 CGGATTCCCTCCCATCCCG 61.884 68.421 0.00 0.00 41.49 5.14
1194 1565 2.552599 TCTCTCTGTCTGTCTGTCGT 57.447 50.000 0.00 0.00 0.00 4.34
1196 1567 2.147150 CTCTCTGTCTGTCTGTCGTCA 58.853 52.381 0.00 0.00 0.00 4.35
1208 1579 1.339610 CTGTCGTCATCCATCTCCCTC 59.660 57.143 0.00 0.00 0.00 4.30
1410 1782 4.722535 AGGAAGCAGGCCGAGGGA 62.723 66.667 0.00 0.00 0.00 4.20
1585 1957 3.391382 AGGTACGTGCTCTGCCCC 61.391 66.667 3.01 0.00 0.00 5.80
1611 1983 1.446792 CTTCAGATCCACGCACGCT 60.447 57.895 0.00 0.00 0.00 5.07
1613 1985 1.877576 TTCAGATCCACGCACGCTCT 61.878 55.000 0.00 0.00 0.00 4.09
1627 1999 1.723870 GCTCTGCCAATTACTGCCG 59.276 57.895 0.00 0.00 0.00 5.69
1643 2015 0.737715 GCCGAATGTCTTGCTCTCGT 60.738 55.000 0.00 0.00 0.00 4.18
1644 2016 1.272781 CCGAATGTCTTGCTCTCGTC 58.727 55.000 0.00 0.00 0.00 4.20
1646 2018 2.181205 CGAATGTCTTGCTCTCGTCTC 58.819 52.381 0.00 0.00 0.00 3.36
1647 2019 2.181205 GAATGTCTTGCTCTCGTCTCG 58.819 52.381 0.00 0.00 0.00 4.04
1648 2020 1.454201 ATGTCTTGCTCTCGTCTCGA 58.546 50.000 0.00 0.00 0.00 4.04
1664 2036 4.021925 GAGTGCCCCGGCTCTGTT 62.022 66.667 14.72 0.00 43.75 3.16
1665 2037 2.606519 AGTGCCCCGGCTCTGTTA 60.607 61.111 9.43 0.00 42.39 2.41
1666 2038 2.125106 GTGCCCCGGCTCTGTTAG 60.125 66.667 7.35 0.00 42.51 2.34
1667 2039 2.606519 TGCCCCGGCTCTGTTAGT 60.607 61.111 7.35 0.00 42.51 2.24
1668 2040 2.187163 GCCCCGGCTCTGTTAGTC 59.813 66.667 0.00 0.00 38.26 2.59
1673 2045 4.816990 GGCTCTGTTAGTCGAGGC 57.183 61.111 0.00 0.00 43.97 4.70
1675 2047 3.037485 GCTCTGTTAGTCGAGGCAC 57.963 57.895 0.00 0.00 0.00 5.01
1677 2049 1.743958 GCTCTGTTAGTCGAGGCACTA 59.256 52.381 0.00 0.00 41.55 2.74
1678 2050 2.359531 GCTCTGTTAGTCGAGGCACTAT 59.640 50.000 0.00 0.00 41.55 2.12
1679 2051 3.181485 GCTCTGTTAGTCGAGGCACTATT 60.181 47.826 0.00 0.00 41.55 1.73
1691 2063 4.681781 CGAGGCACTATTCAGATTTCACCT 60.682 45.833 0.00 0.00 41.55 4.00
1697 2069 6.372659 GCACTATTCAGATTTCACCTTTGAGA 59.627 38.462 0.00 0.00 31.71 3.27
1698 2070 7.066766 GCACTATTCAGATTTCACCTTTGAGAT 59.933 37.037 0.00 0.00 31.71 2.75
1700 2072 8.954350 ACTATTCAGATTTCACCTTTGAGATTG 58.046 33.333 0.00 0.00 31.71 2.67
1702 2074 8.868522 ATTCAGATTTCACCTTTGAGATTGTA 57.131 30.769 0.00 0.00 31.71 2.41
1742 2133 3.380004 ACTTCAGCGGAACATTTTCACAA 59.620 39.130 0.00 0.00 32.80 3.33
1811 2210 6.654582 TCTCGTGAGATTTGGATCATTTTTGA 59.345 34.615 0.00 0.00 40.84 2.69
1845 2244 3.325293 TGTCTCTGAGCTGAACAATCC 57.675 47.619 0.00 0.00 0.00 3.01
1904 2303 3.488778 CTTCAGGATAAGCATGAGCCT 57.511 47.619 0.00 0.00 33.57 4.58
1906 2305 3.721793 AGGATAAGCATGAGCCTGC 57.278 52.632 0.00 0.00 30.54 4.85
1912 2311 3.185155 GCATGAGCCTGCTGACAC 58.815 61.111 0.00 0.00 39.12 3.67
1913 2312 2.747822 GCATGAGCCTGCTGACACG 61.748 63.158 0.00 0.00 39.12 4.49
1914 2313 2.104859 CATGAGCCTGCTGACACGG 61.105 63.158 0.00 0.00 0.00 4.94
1991 2402 0.957395 CCACTGCCTTGTCGATGCTT 60.957 55.000 0.00 0.00 0.00 3.91
1995 2406 0.890542 TGCCTTGTCGATGCTTGCTT 60.891 50.000 0.00 0.00 0.00 3.91
2012 2423 4.320608 TGCTTCAAGGGAAAATGTCAAC 57.679 40.909 0.00 0.00 31.35 3.18
2111 2522 3.174788 CCGAACCAAAGTAGCGGC 58.825 61.111 0.00 0.00 37.29 6.53
2209 2620 5.504010 CGGTGTACTATATGCAAAGCCAAAG 60.504 44.000 0.00 0.00 0.00 2.77
2223 2634 1.405105 GCCAAAGTCAAGTGAACTGCA 59.595 47.619 0.00 0.00 0.00 4.41
2720 3131 1.945662 GCCACAGCAACTGCAAACG 60.946 57.895 4.22 0.00 45.16 3.60
2752 3163 0.187117 TCATGCCCACCTCAACCAAA 59.813 50.000 0.00 0.00 0.00 3.28
2834 3245 4.103785 ACTGCCACATATAAGAATCCTGCT 59.896 41.667 0.00 0.00 0.00 4.24
2911 3322 0.246086 GCGTTTCATCATTTGGGGCA 59.754 50.000 0.00 0.00 0.00 5.36
3002 3413 0.981183 TGGTTGGGAGTATGACGCTT 59.019 50.000 0.00 0.00 0.00 4.68
3090 3501 1.593750 CGAGACTGGCCTGCATAGC 60.594 63.158 9.95 0.27 0.00 2.97
3122 3533 3.317993 GCAGTTGTTGGGTACTTCATTGT 59.682 43.478 0.00 0.00 0.00 2.71
3234 3645 6.511416 CAGATTGGTACAGATCCTTCTACTG 58.489 44.000 0.00 0.00 42.39 2.74
3266 3679 6.009589 TGCTGAAGGGTCAATCTGAAATAAA 58.990 36.000 0.00 0.00 31.88 1.40
3363 3776 1.220749 GGCGATGAACCTGTGCCTA 59.779 57.895 0.00 0.00 42.44 3.93
3584 4269 9.488762 TCATAACTACTCCCTTGATCTAAAAGA 57.511 33.333 0.00 0.00 0.00 2.52
3621 4306 7.287512 AGTTTACGGAGGGAGTATATCTTTC 57.712 40.000 0.00 0.00 0.00 2.62
3622 4307 7.068061 AGTTTACGGAGGGAGTATATCTTTCT 58.932 38.462 0.00 0.00 0.00 2.52
3653 4338 3.747099 ATTGCGTTTCAGATGTAGCAC 57.253 42.857 0.00 0.00 34.13 4.40
3669 4356 4.581409 TGTAGCACCTTCTTTTTAACACCC 59.419 41.667 0.00 0.00 0.00 4.61
3672 4359 3.304458 GCACCTTCTTTTTAACACCCTCG 60.304 47.826 0.00 0.00 0.00 4.63
3697 4384 1.877637 AGCAGTATGTGTGCGAACAA 58.122 45.000 0.00 0.00 46.06 2.83
3701 4388 2.095819 CAGTATGTGTGCGAACAATGCA 60.096 45.455 0.00 0.00 40.70 3.96
3716 4403 3.322828 ACAATGCAACTGGAGAAAGCAAT 59.677 39.130 0.00 0.00 38.85 3.56
3721 4408 4.340666 TGCAACTGGAGAAAGCAATTGTTA 59.659 37.500 7.40 0.00 31.42 2.41
3752 4439 2.027377 TGGAAAATAACGGCCGGAACTA 60.027 45.455 31.76 15.16 0.00 2.24
3753 4440 2.610833 GGAAAATAACGGCCGGAACTAG 59.389 50.000 31.76 0.00 0.00 2.57
3754 4441 3.524541 GAAAATAACGGCCGGAACTAGA 58.475 45.455 31.76 6.19 0.00 2.43
3755 4442 2.884894 AATAACGGCCGGAACTAGAG 57.115 50.000 31.76 0.00 0.00 2.43
3758 4502 0.323725 AACGGCCGGAACTAGAGGTA 60.324 55.000 31.76 0.00 0.00 3.08
3793 4537 6.704493 TGAACAAACCACTACTTGCTAGTAAG 59.296 38.462 17.90 17.90 36.46 2.34
3795 4539 7.005709 ACAAACCACTACTTGCTAGTAAGAT 57.994 36.000 25.11 12.70 36.46 2.40
3797 4541 8.591072 ACAAACCACTACTTGCTAGTAAGATTA 58.409 33.333 25.11 8.77 36.46 1.75
3799 4543 9.601217 AAACCACTACTTGCTAGTAAGATTATG 57.399 33.333 25.11 16.14 36.46 1.90
3800 4544 8.307582 ACCACTACTTGCTAGTAAGATTATGT 57.692 34.615 25.11 13.60 36.46 2.29
3801 4545 8.759782 ACCACTACTTGCTAGTAAGATTATGTT 58.240 33.333 25.11 5.36 36.46 2.71
3802 4546 9.601217 CCACTACTTGCTAGTAAGATTATGTTT 57.399 33.333 25.11 4.68 36.46 2.83
3814 4558 9.682465 AGTAAGATTATGTTTCTTTTAGGACCC 57.318 33.333 0.00 0.00 35.19 4.46
3815 4559 7.956328 AAGATTATGTTTCTTTTAGGACCCC 57.044 36.000 0.00 0.00 29.12 4.95
3817 4561 7.475299 AGATTATGTTTCTTTTAGGACCCCAA 58.525 34.615 0.00 0.00 0.00 4.12
3818 4562 8.122481 AGATTATGTTTCTTTTAGGACCCCAAT 58.878 33.333 0.00 0.00 0.00 3.16
3819 4563 9.416284 GATTATGTTTCTTTTAGGACCCCAATA 57.584 33.333 0.00 0.00 0.00 1.90
3820 4564 9.777008 ATTATGTTTCTTTTAGGACCCCAATAA 57.223 29.630 0.00 0.00 0.00 1.40
3824 4568 7.179516 TGTTTCTTTTAGGACCCCAATAAATCC 59.820 37.037 0.00 0.00 0.00 3.01
3825 4569 6.668133 TCTTTTAGGACCCCAATAAATCCT 57.332 37.500 0.00 0.00 44.03 3.24
3826 4570 6.431722 TCTTTTAGGACCCCAATAAATCCTG 58.568 40.000 1.83 0.00 41.76 3.86
3828 4572 6.410222 TTTAGGACCCCAATAAATCCTGAA 57.590 37.500 1.83 0.00 41.76 3.02
3829 4573 4.251103 AGGACCCCAATAAATCCTGAAC 57.749 45.455 0.00 0.00 40.18 3.18
3830 4574 3.596046 AGGACCCCAATAAATCCTGAACA 59.404 43.478 0.00 0.00 40.18 3.18
3831 4575 4.232820 AGGACCCCAATAAATCCTGAACAT 59.767 41.667 0.00 0.00 40.18 2.71
3832 4576 4.962362 GGACCCCAATAAATCCTGAACATT 59.038 41.667 0.00 0.00 0.00 2.71
3833 4577 5.069119 GGACCCCAATAAATCCTGAACATTC 59.931 44.000 0.00 0.00 0.00 2.67
3834 4578 4.644685 ACCCCAATAAATCCTGAACATTCG 59.355 41.667 0.00 0.00 0.00 3.34
3835 4579 4.037923 CCCCAATAAATCCTGAACATTCGG 59.962 45.833 0.00 0.00 0.00 4.30
3836 4580 4.887071 CCCAATAAATCCTGAACATTCGGA 59.113 41.667 1.83 5.09 35.56 4.55
3837 4581 5.536161 CCCAATAAATCCTGAACATTCGGAT 59.464 40.000 1.83 7.01 40.07 4.18
3838 4582 6.040842 CCCAATAAATCCTGAACATTCGGATT 59.959 38.462 17.53 17.53 44.51 3.01
3843 4587 5.757850 ATCCTGAACATTCGGATTTAAGC 57.242 39.130 1.83 0.00 37.33 3.09
3844 4588 4.584874 TCCTGAACATTCGGATTTAAGCA 58.415 39.130 1.83 0.00 35.56 3.91
3845 4589 5.192927 TCCTGAACATTCGGATTTAAGCAT 58.807 37.500 1.83 0.00 35.56 3.79
3846 4590 5.066375 TCCTGAACATTCGGATTTAAGCATG 59.934 40.000 1.83 0.00 35.56 4.06
3847 4591 5.163622 CCTGAACATTCGGATTTAAGCATGT 60.164 40.000 1.83 0.00 35.56 3.21
3849 4593 5.414144 TGAACATTCGGATTTAAGCATGTCA 59.586 36.000 0.00 0.00 0.00 3.58
3850 4594 6.095300 TGAACATTCGGATTTAAGCATGTCAT 59.905 34.615 0.00 0.00 0.00 3.06
3851 4595 6.455360 ACATTCGGATTTAAGCATGTCATT 57.545 33.333 0.00 0.00 0.00 2.57
3852 4596 6.498304 ACATTCGGATTTAAGCATGTCATTC 58.502 36.000 0.00 0.00 0.00 2.67
3853 4597 6.319658 ACATTCGGATTTAAGCATGTCATTCT 59.680 34.615 0.00 0.00 0.00 2.40
3855 4599 5.427378 TCGGATTTAAGCATGTCATTCTGA 58.573 37.500 0.00 0.00 0.00 3.27
3856 4600 5.879777 TCGGATTTAAGCATGTCATTCTGAA 59.120 36.000 0.00 0.00 0.00 3.02
3857 4601 5.967674 CGGATTTAAGCATGTCATTCTGAAC 59.032 40.000 0.00 0.00 0.00 3.18
3894 4638 4.099266 AACTTTAGTTGATGCAAAGTGGCA 59.901 37.500 0.00 0.00 40.63 4.92
3895 4639 5.395103 AACTTTAGTTGATGCAAAGTGGCAA 60.395 36.000 0.00 0.00 40.63 4.52
3896 4640 7.394280 AACTTTAGTTGATGCAAAGTGGCAAC 61.394 38.462 0.00 0.00 40.63 4.17
3919 4663 6.354130 ACTTTAGTTGTGAACACATGGTACT 58.646 36.000 8.46 10.83 41.52 2.73
3920 4664 6.826741 ACTTTAGTTGTGAACACATGGTACTT 59.173 34.615 12.88 2.17 41.52 2.24
3921 4665 7.338449 ACTTTAGTTGTGAACACATGGTACTTT 59.662 33.333 12.88 0.00 41.52 2.66
3922 4666 5.499139 AGTTGTGAACACATGGTACTTTG 57.501 39.130 8.46 0.00 41.52 2.77
3925 4669 3.880490 TGTGAACACATGGTACTTTGTCC 59.120 43.478 3.39 0.00 36.21 4.02
3926 4670 3.252458 GTGAACACATGGTACTTTGTCCC 59.748 47.826 0.00 0.00 0.00 4.46
3927 4671 3.117851 TGAACACATGGTACTTTGTCCCA 60.118 43.478 0.00 0.00 0.00 4.37
3928 4672 3.140325 ACACATGGTACTTTGTCCCAG 57.860 47.619 0.00 0.00 0.00 4.45
3929 4673 2.441750 ACACATGGTACTTTGTCCCAGT 59.558 45.455 0.00 0.00 0.00 4.00
3930 4674 3.117663 ACACATGGTACTTTGTCCCAGTT 60.118 43.478 0.00 0.00 0.00 3.16
3937 4681 7.663043 TGGTACTTTGTCCCAGTTTATTTTT 57.337 32.000 0.00 0.00 0.00 1.94
3963 4707 9.935241 TTTGTTAGAAAATTGCCATATTTGCTA 57.065 25.926 0.00 0.00 35.48 3.49
3964 4708 9.935241 TTGTTAGAAAATTGCCATATTTGCTAA 57.065 25.926 10.29 10.29 40.71 3.09
3968 4712 7.267857 AGAAAATTGCCATATTTGCTAACCTC 58.732 34.615 0.00 0.00 32.69 3.85
3970 4714 1.946768 TGCCATATTTGCTAACCTCGC 59.053 47.619 0.00 0.00 0.00 5.03
3971 4715 1.266989 GCCATATTTGCTAACCTCGCC 59.733 52.381 0.00 0.00 0.00 5.54
3972 4716 2.851195 CCATATTTGCTAACCTCGCCT 58.149 47.619 0.00 0.00 0.00 5.52
3974 4718 3.466836 CATATTTGCTAACCTCGCCTGA 58.533 45.455 0.00 0.00 0.00 3.86
3975 4719 2.489938 ATTTGCTAACCTCGCCTGAA 57.510 45.000 0.00 0.00 0.00 3.02
3977 4721 0.685097 TTGCTAACCTCGCCTGAACT 59.315 50.000 0.00 0.00 0.00 3.01
3978 4722 1.552578 TGCTAACCTCGCCTGAACTA 58.447 50.000 0.00 0.00 0.00 2.24
3979 4723 1.897133 TGCTAACCTCGCCTGAACTAA 59.103 47.619 0.00 0.00 0.00 2.24
3980 4724 2.300723 TGCTAACCTCGCCTGAACTAAA 59.699 45.455 0.00 0.00 0.00 1.85
3982 4726 3.616802 GCTAACCTCGCCTGAACTAAAGT 60.617 47.826 0.00 0.00 0.00 2.66
3983 4727 3.487120 AACCTCGCCTGAACTAAAGTT 57.513 42.857 0.00 0.00 41.64 2.66
3984 4728 2.767505 ACCTCGCCTGAACTAAAGTTG 58.232 47.619 0.00 0.00 38.56 3.16
3985 4729 1.464997 CCTCGCCTGAACTAAAGTTGC 59.535 52.381 0.00 0.00 38.56 4.17
3986 4730 1.464997 CTCGCCTGAACTAAAGTTGCC 59.535 52.381 0.00 0.00 38.56 4.52
3989 4733 2.414559 CGCCTGAACTAAAGTTGCCATG 60.415 50.000 0.00 0.00 38.56 3.66
3991 4735 3.255642 GCCTGAACTAAAGTTGCCATGAA 59.744 43.478 0.00 0.00 38.56 2.57
3992 4736 4.261994 GCCTGAACTAAAGTTGCCATGAAA 60.262 41.667 0.00 0.00 38.56 2.69
3993 4737 5.738783 GCCTGAACTAAAGTTGCCATGAAAA 60.739 40.000 0.00 0.00 38.56 2.29
3994 4738 5.922544 CCTGAACTAAAGTTGCCATGAAAAG 59.077 40.000 0.00 0.00 38.56 2.27
3995 4739 5.288804 TGAACTAAAGTTGCCATGAAAAGC 58.711 37.500 0.00 0.00 38.56 3.51
3996 4740 4.935352 ACTAAAGTTGCCATGAAAAGCA 57.065 36.364 0.00 0.00 37.18 3.91
3998 4742 5.473039 ACTAAAGTTGCCATGAAAAGCATC 58.527 37.500 0.00 0.00 39.11 3.91
3999 4743 3.323751 AAGTTGCCATGAAAAGCATCC 57.676 42.857 0.00 0.00 39.11 3.51
4002 4746 1.321805 TGCCATGAAAAGCATCCGGG 61.322 55.000 0.00 0.00 34.15 5.73
4003 4747 1.322538 GCCATGAAAAGCATCCGGGT 61.323 55.000 0.00 0.00 34.15 5.28
4004 4748 1.185315 CCATGAAAAGCATCCGGGTT 58.815 50.000 0.00 0.00 39.32 4.11
4005 4749 1.135024 CCATGAAAAGCATCCGGGTTG 60.135 52.381 0.00 0.46 37.28 3.77
4007 4751 1.215382 GAAAAGCATCCGGGTTGCC 59.785 57.895 23.01 7.27 41.06 4.52
4008 4752 1.531739 GAAAAGCATCCGGGTTGCCA 61.532 55.000 23.01 0.00 41.06 4.92
4011 4755 4.211502 GCATCCGGGTTGCCATGC 62.212 66.667 17.45 12.43 35.23 4.06
4012 4756 2.440796 CATCCGGGTTGCCATGCT 60.441 61.111 0.00 0.00 0.00 3.79
4013 4757 2.053865 CATCCGGGTTGCCATGCTT 61.054 57.895 0.00 0.00 0.00 3.91
4014 4758 0.751277 CATCCGGGTTGCCATGCTTA 60.751 55.000 0.00 0.00 0.00 3.09
4015 4759 0.033601 ATCCGGGTTGCCATGCTTAA 60.034 50.000 0.00 0.00 0.00 1.85
4016 4760 0.251386 TCCGGGTTGCCATGCTTAAA 60.251 50.000 0.00 0.00 0.00 1.52
4017 4761 0.605589 CCGGGTTGCCATGCTTAAAA 59.394 50.000 0.00 0.00 0.00 1.52
4018 4762 1.206849 CCGGGTTGCCATGCTTAAAAT 59.793 47.619 0.00 0.00 0.00 1.82
4019 4763 2.539476 CGGGTTGCCATGCTTAAAATC 58.461 47.619 0.00 0.00 0.00 2.17
4020 4764 2.738321 CGGGTTGCCATGCTTAAAATCC 60.738 50.000 0.00 0.00 0.00 3.01
4024 4768 4.154015 GGTTGCCATGCTTAAAATCCAAAC 59.846 41.667 0.00 0.00 0.00 2.93
4025 4769 3.583806 TGCCATGCTTAAAATCCAAACG 58.416 40.909 0.00 0.00 0.00 3.60
4026 4770 3.006323 TGCCATGCTTAAAATCCAAACGT 59.994 39.130 0.00 0.00 0.00 3.99
4027 4771 3.612423 GCCATGCTTAAAATCCAAACGTC 59.388 43.478 0.00 0.00 0.00 4.34
4028 4772 4.618227 GCCATGCTTAAAATCCAAACGTCT 60.618 41.667 0.00 0.00 0.00 4.18
4029 4773 5.392595 GCCATGCTTAAAATCCAAACGTCTA 60.393 40.000 0.00 0.00 0.00 2.59
4030 4774 6.258160 CCATGCTTAAAATCCAAACGTCTAG 58.742 40.000 0.00 0.00 0.00 2.43
4032 4776 5.553123 TGCTTAAAATCCAAACGTCTAGGA 58.447 37.500 6.11 6.11 35.59 2.94
4033 4777 6.177610 TGCTTAAAATCCAAACGTCTAGGAT 58.822 36.000 9.76 9.76 43.77 3.24
4042 4786 8.980481 ATCCAAACGTCTAGGATTTATCATTT 57.020 30.769 9.76 0.00 39.02 2.32
4044 4788 7.223971 TCCAAACGTCTAGGATTTATCATTTCG 59.776 37.037 0.00 0.00 0.00 3.46
4093 6716 6.823689 AGATTGGTCGTTCATAGCAAAGTTAT 59.176 34.615 0.00 0.00 37.81 1.89
4159 6866 6.407202 AGACTCCAGTATTTTACATGACACC 58.593 40.000 0.00 0.00 0.00 4.16
4162 6869 5.172934 TCCAGTATTTTACATGACACCGAC 58.827 41.667 0.00 0.00 0.00 4.79
4238 7083 6.043474 ACAACAACCAAATACTACTACCTGGA 59.957 38.462 0.00 0.00 0.00 3.86
4244 7201 6.271624 ACCAAATACTACTACCTGGAACTTGT 59.728 38.462 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.452145 GCTGGCGTTGTCCCAAAGAA 61.452 55.000 0.00 0.00 30.66 2.52
34 35 2.458951 TCTTTTGCATGTTTGTCACGC 58.541 42.857 0.00 0.00 35.67 5.34
76 77 3.890756 TGCTTCTTGGCATCTTTGAAAGA 59.109 39.130 10.39 10.39 42.69 2.52
104 105 2.721425 TCCCGTCTTGTCCTTGTTTT 57.279 45.000 0.00 0.00 0.00 2.43
150 151 4.495422 GTCATCGGTATTGAGGCGATAAT 58.505 43.478 0.00 0.00 0.00 1.28
162 163 1.740285 GGTCGCTGGTCATCGGTAT 59.260 57.895 0.00 0.00 0.00 2.73
164 165 4.129737 CGGTCGCTGGTCATCGGT 62.130 66.667 0.00 0.00 0.00 4.69
165 166 2.829043 TTTCGGTCGCTGGTCATCGG 62.829 60.000 0.00 0.00 0.00 4.18
166 167 0.806102 ATTTCGGTCGCTGGTCATCG 60.806 55.000 0.00 0.00 0.00 3.84
172 173 1.278238 GTGTAGATTTCGGTCGCTGG 58.722 55.000 0.00 0.00 0.00 4.85
173 174 1.135083 AGGTGTAGATTTCGGTCGCTG 60.135 52.381 0.00 0.00 0.00 5.18
176 177 4.741342 AGTTTAGGTGTAGATTTCGGTCG 58.259 43.478 0.00 0.00 0.00 4.79
180 181 8.996271 AGGTTTTTAGTTTAGGTGTAGATTTCG 58.004 33.333 0.00 0.00 0.00 3.46
185 186 7.219322 GGTGAGGTTTTTAGTTTAGGTGTAGA 58.781 38.462 0.00 0.00 0.00 2.59
226 228 1.003223 CAAGACCCCGTTGTTTCGAAC 60.003 52.381 0.00 0.00 0.00 3.95
228 230 0.464870 TCAAGACCCCGTTGTTTCGA 59.535 50.000 0.00 0.00 0.00 3.71
229 231 0.584876 GTCAAGACCCCGTTGTTTCG 59.415 55.000 0.00 0.00 0.00 3.46
245 247 0.178944 TTGACGGAGGGAAGAGGTCA 60.179 55.000 0.00 0.00 35.97 4.02
247 249 0.977395 CTTTGACGGAGGGAAGAGGT 59.023 55.000 0.00 0.00 0.00 3.85
250 252 0.685097 CCACTTTGACGGAGGGAAGA 59.315 55.000 0.00 0.00 0.00 2.87
285 294 2.293452 ACCTTCTCCCTGGTGAGATCAT 60.293 50.000 13.41 2.83 40.89 2.45
289 298 2.000803 TCTACCTTCTCCCTGGTGAGA 58.999 52.381 9.86 9.86 39.58 3.27
315 324 1.689233 TAGCAGCTAGGGTGTGGGG 60.689 63.158 0.00 0.00 33.19 4.96
343 352 3.647636 TCATACCTCCTTCCTCTCTTGG 58.352 50.000 0.00 0.00 0.00 3.61
344 353 5.885449 ATTCATACCTCCTTCCTCTCTTG 57.115 43.478 0.00 0.00 0.00 3.02
345 354 6.445139 TGAAATTCATACCTCCTTCCTCTCTT 59.555 38.462 0.00 0.00 0.00 2.85
362 371 5.162075 ACGAAAAACAAACCGTGAAATTCA 58.838 33.333 0.00 0.00 33.69 2.57
366 375 5.323105 GTCTACGAAAAACAAACCGTGAAA 58.677 37.500 0.00 0.00 36.58 2.69
369 378 3.242059 ACGTCTACGAAAAACAAACCGTG 60.242 43.478 9.86 0.00 43.02 4.94
372 381 5.608206 CGTCTACGTCTACGAAAAACAAACC 60.608 44.000 15.31 0.00 41.55 3.27
373 382 5.349920 CGTCTACGTCTACGAAAAACAAAC 58.650 41.667 15.31 0.00 41.55 2.93
374 383 4.085619 GCGTCTACGTCTACGAAAAACAAA 60.086 41.667 22.31 0.00 41.55 2.83
375 384 3.421888 GCGTCTACGTCTACGAAAAACAA 59.578 43.478 22.31 0.00 41.55 2.83
390 399 2.846039 TTGATTCGAGAGGCGTCTAC 57.154 50.000 9.29 2.63 41.80 2.59
453 463 5.125739 GCCGGTATCAGTAGCATATTAGAGT 59.874 44.000 1.90 0.00 0.00 3.24
479 490 2.827921 ACTGGTTTTGATGGGAAGATGC 59.172 45.455 0.00 0.00 0.00 3.91
485 496 1.993956 CCACACTGGTTTTGATGGGA 58.006 50.000 0.00 0.00 31.35 4.37
498 509 2.186826 GGTCTGCGTTTGCCACACT 61.187 57.895 0.00 0.00 41.78 3.55
503 514 2.700773 GGATGGGTCTGCGTTTGCC 61.701 63.158 0.00 0.00 41.78 4.52
504 515 1.971167 TGGATGGGTCTGCGTTTGC 60.971 57.895 0.00 0.00 43.20 3.68
508 519 4.760047 GCGTGGATGGGTCTGCGT 62.760 66.667 0.00 0.00 0.00 5.24
510 521 3.127533 GTGCGTGGATGGGTCTGC 61.128 66.667 0.00 0.00 0.00 4.26
511 522 0.677731 AATGTGCGTGGATGGGTCTG 60.678 55.000 0.00 0.00 0.00 3.51
512 523 0.038166 AAATGTGCGTGGATGGGTCT 59.962 50.000 0.00 0.00 0.00 3.85
514 525 0.038166 AGAAATGTGCGTGGATGGGT 59.962 50.000 0.00 0.00 0.00 4.51
515 526 1.176527 AAGAAATGTGCGTGGATGGG 58.823 50.000 0.00 0.00 0.00 4.00
516 527 3.302365 AAAAGAAATGTGCGTGGATGG 57.698 42.857 0.00 0.00 0.00 3.51
519 530 5.918011 GTGATTAAAAAGAAATGTGCGTGGA 59.082 36.000 0.00 0.00 0.00 4.02
520 531 5.164196 CGTGATTAAAAAGAAATGTGCGTGG 60.164 40.000 0.00 0.00 0.00 4.94
560 584 0.900182 TGTCACGCTCAGGTCTCCAT 60.900 55.000 0.00 0.00 0.00 3.41
561 585 1.530655 TGTCACGCTCAGGTCTCCA 60.531 57.895 0.00 0.00 0.00 3.86
598 652 1.228154 GTTCGGGTCAGCTTGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
599 653 2.430367 GTTCGGGTCAGCTTGGGT 59.570 61.111 0.00 0.00 0.00 4.51
600 654 2.359975 GGTTCGGGTCAGCTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
601 655 1.228124 TTGGTTCGGGTCAGCTTGG 60.228 57.895 0.00 0.00 0.00 3.61
602 656 1.515521 GGTTGGTTCGGGTCAGCTTG 61.516 60.000 0.00 0.00 0.00 4.01
603 657 1.228154 GGTTGGTTCGGGTCAGCTT 60.228 57.895 0.00 0.00 0.00 3.74
604 658 2.397413 CTGGTTGGTTCGGGTCAGCT 62.397 60.000 0.00 0.00 0.00 4.24
605 659 1.966451 CTGGTTGGTTCGGGTCAGC 60.966 63.158 0.00 0.00 0.00 4.26
606 660 0.602905 GTCTGGTTGGTTCGGGTCAG 60.603 60.000 0.00 0.00 0.00 3.51
607 661 1.448497 GTCTGGTTGGTTCGGGTCA 59.552 57.895 0.00 0.00 0.00 4.02
608 662 1.302271 GGTCTGGTTGGTTCGGGTC 60.302 63.158 0.00 0.00 0.00 4.46
609 663 2.833957 GGTCTGGTTGGTTCGGGT 59.166 61.111 0.00 0.00 0.00 5.28
610 664 2.358247 CGGTCTGGTTGGTTCGGG 60.358 66.667 0.00 0.00 0.00 5.14
611 665 1.666872 GACGGTCTGGTTGGTTCGG 60.667 63.158 0.00 0.00 0.00 4.30
612 666 0.666577 GAGACGGTCTGGTTGGTTCG 60.667 60.000 16.72 0.00 0.00 3.95
613 667 0.320508 GGAGACGGTCTGGTTGGTTC 60.321 60.000 16.72 0.00 0.00 3.62
614 668 1.752833 GGAGACGGTCTGGTTGGTT 59.247 57.895 16.72 0.00 0.00 3.67
615 669 2.214920 GGGAGACGGTCTGGTTGGT 61.215 63.158 16.72 0.00 0.00 3.67
616 670 2.663196 GGGAGACGGTCTGGTTGG 59.337 66.667 16.72 0.00 0.00 3.77
617 671 2.261671 CGGGAGACGGTCTGGTTG 59.738 66.667 16.72 0.00 39.42 3.77
700 757 3.600346 GTGTTCGTTTGTTTACTGACGG 58.400 45.455 0.00 0.00 36.27 4.79
718 775 1.600636 CTTGGATGTGTGGCCGTGT 60.601 57.895 0.00 0.00 0.00 4.49
729 786 3.118992 TGAGATCTGGTTCGACTTGGATG 60.119 47.826 0.00 0.00 0.00 3.51
730 787 3.099905 TGAGATCTGGTTCGACTTGGAT 58.900 45.455 0.00 0.00 0.00 3.41
775 832 1.064825 GACAAGTGGGGAAAGAGGGA 58.935 55.000 0.00 0.00 0.00 4.20
876 934 3.845781 AAAGCAGAGTGAAACAGAGGA 57.154 42.857 0.00 0.00 41.43 3.71
973 1031 1.770518 GGACGGGATGGGAGGGAAT 60.771 63.158 0.00 0.00 0.00 3.01
974 1032 2.366435 GGACGGGATGGGAGGGAA 60.366 66.667 0.00 0.00 0.00 3.97
975 1033 4.492303 GGGACGGGATGGGAGGGA 62.492 72.222 0.00 0.00 0.00 4.20
977 1035 4.499116 AGGGGACGGGATGGGAGG 62.499 72.222 0.00 0.00 0.00 4.30
978 1036 2.844839 GAGGGGACGGGATGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
979 1037 4.492303 GGAGGGGACGGGATGGGA 62.492 72.222 0.00 0.00 0.00 4.37
1013 1071 2.829003 TTTTGGGTTGGTGCGCGA 60.829 55.556 12.10 0.00 0.00 5.87
1171 1542 3.559655 CGACAGACAGACAGAGAGATAGG 59.440 52.174 0.00 0.00 0.00 2.57
1194 1565 3.076182 GGTAGTAGGAGGGAGATGGATGA 59.924 52.174 0.00 0.00 0.00 2.92
1196 1567 3.072086 TGGTAGTAGGAGGGAGATGGAT 58.928 50.000 0.00 0.00 0.00 3.41
1208 1579 1.217244 GCGTGGTGGTGGTAGTAGG 59.783 63.158 0.00 0.00 0.00 3.18
1410 1782 1.808799 CTCGAGCGAATGCAGCAGT 60.809 57.895 0.00 0.00 46.23 4.40
1585 1957 4.918201 GGATCTGAAGGCGGGGCG 62.918 72.222 0.00 0.00 0.00 6.13
1627 1999 2.159503 TCGAGACGAGAGCAAGACATTC 60.160 50.000 0.00 0.00 0.00 2.67
1647 2019 2.579684 CTAACAGAGCCGGGGCACTC 62.580 65.000 12.97 0.21 44.88 3.51
1648 2020 2.606519 TAACAGAGCCGGGGCACT 60.607 61.111 12.97 8.26 44.88 4.40
1649 2021 2.125106 CTAACAGAGCCGGGGCAC 60.125 66.667 12.97 5.66 44.88 5.01
1650 2022 2.606519 ACTAACAGAGCCGGGGCA 60.607 61.111 12.97 0.00 44.88 5.36
1651 2023 2.187163 GACTAACAGAGCCGGGGC 59.813 66.667 2.18 0.18 42.33 5.80
1652 2024 2.005960 CTCGACTAACAGAGCCGGGG 62.006 65.000 2.18 0.00 0.00 5.73
1653 2025 1.433879 CTCGACTAACAGAGCCGGG 59.566 63.158 2.18 0.00 0.00 5.73
1654 2026 1.433879 CCTCGACTAACAGAGCCGG 59.566 63.158 0.00 0.00 33.39 6.13
1655 2027 1.226717 GCCTCGACTAACAGAGCCG 60.227 63.158 0.00 0.00 33.39 5.52
1656 2028 0.458716 GTGCCTCGACTAACAGAGCC 60.459 60.000 0.00 0.00 33.39 4.70
1657 2029 0.528470 AGTGCCTCGACTAACAGAGC 59.472 55.000 0.00 0.00 33.39 4.09
1658 2030 4.096532 TGAATAGTGCCTCGACTAACAGAG 59.903 45.833 0.00 0.00 32.19 3.35
1659 2031 4.014406 TGAATAGTGCCTCGACTAACAGA 58.986 43.478 0.00 0.00 32.19 3.41
1660 2032 4.096532 TCTGAATAGTGCCTCGACTAACAG 59.903 45.833 0.00 0.00 37.76 3.16
1661 2033 4.014406 TCTGAATAGTGCCTCGACTAACA 58.986 43.478 0.00 0.00 32.19 2.41
1662 2034 4.634184 TCTGAATAGTGCCTCGACTAAC 57.366 45.455 0.00 0.00 32.19 2.34
1663 2035 5.854010 AATCTGAATAGTGCCTCGACTAA 57.146 39.130 0.00 0.00 32.19 2.24
1664 2036 5.359860 TGAAATCTGAATAGTGCCTCGACTA 59.640 40.000 0.00 0.00 32.97 2.59
1665 2037 4.160439 TGAAATCTGAATAGTGCCTCGACT 59.840 41.667 0.00 0.00 0.00 4.18
1666 2038 4.268884 GTGAAATCTGAATAGTGCCTCGAC 59.731 45.833 0.00 0.00 0.00 4.20
1667 2039 4.433615 GTGAAATCTGAATAGTGCCTCGA 58.566 43.478 0.00 0.00 0.00 4.04
1668 2040 3.557595 GGTGAAATCTGAATAGTGCCTCG 59.442 47.826 0.00 0.00 0.00 4.63
1669 2041 4.775236 AGGTGAAATCTGAATAGTGCCTC 58.225 43.478 0.00 0.00 0.00 4.70
1670 2042 4.851639 AGGTGAAATCTGAATAGTGCCT 57.148 40.909 0.00 0.00 0.00 4.75
1671 2043 5.415701 TCAAAGGTGAAATCTGAATAGTGCC 59.584 40.000 0.00 0.00 0.00 5.01
1672 2044 6.372659 TCTCAAAGGTGAAATCTGAATAGTGC 59.627 38.462 0.00 0.00 31.88 4.40
1673 2045 7.912056 TCTCAAAGGTGAAATCTGAATAGTG 57.088 36.000 0.00 0.00 31.88 2.74
1674 2046 8.954350 CAATCTCAAAGGTGAAATCTGAATAGT 58.046 33.333 0.00 0.00 31.88 2.12
1675 2047 8.954350 ACAATCTCAAAGGTGAAATCTGAATAG 58.046 33.333 0.00 0.00 31.88 1.73
1676 2048 8.868522 ACAATCTCAAAGGTGAAATCTGAATA 57.131 30.769 0.00 0.00 31.88 1.75
1677 2049 7.771927 ACAATCTCAAAGGTGAAATCTGAAT 57.228 32.000 0.00 0.00 31.88 2.57
1678 2050 7.939039 ACTACAATCTCAAAGGTGAAATCTGAA 59.061 33.333 0.00 0.00 31.88 3.02
1679 2051 7.388776 CACTACAATCTCAAAGGTGAAATCTGA 59.611 37.037 0.00 0.00 31.88 3.27
1691 2063 5.705441 CCTTAAGCACCACTACAATCTCAAA 59.295 40.000 0.00 0.00 0.00 2.69
1697 2069 4.910458 ACTCCTTAAGCACCACTACAAT 57.090 40.909 0.00 0.00 0.00 2.71
1698 2070 4.699925 AACTCCTTAAGCACCACTACAA 57.300 40.909 0.00 0.00 0.00 2.41
1700 2072 5.402997 AGTAACTCCTTAAGCACCACTAC 57.597 43.478 0.00 0.00 0.00 2.73
1702 2074 4.347000 TGAAGTAACTCCTTAAGCACCACT 59.653 41.667 0.00 0.00 0.00 4.00
1742 2133 5.970023 CGTACGTAGTTTAAGAATAGCAGCT 59.030 40.000 7.22 0.00 37.78 4.24
1811 2210 7.388224 CAGCTCAGAGACATATTCTTAATGCAT 59.612 37.037 0.00 0.00 33.22 3.96
1906 2305 4.374702 GTTGCTGCGCCGTGTCAG 62.375 66.667 4.18 0.00 0.00 3.51
1907 2306 4.908687 AGTTGCTGCGCCGTGTCA 62.909 61.111 4.18 0.00 0.00 3.58
1908 2307 4.374702 CAGTTGCTGCGCCGTGTC 62.375 66.667 4.18 0.00 0.00 3.67
1914 2313 4.283403 TTTGGCCAGTTGCTGCGC 62.283 61.111 5.11 0.00 40.92 6.09
1991 2402 3.243367 CGTTGACATTTTCCCTTGAAGCA 60.243 43.478 0.00 0.00 0.00 3.91
1995 2406 4.393834 TGATCGTTGACATTTTCCCTTGA 58.606 39.130 0.00 0.00 0.00 3.02
2012 2423 1.267235 GCGAATTGTGTGCTCTGATCG 60.267 52.381 0.00 0.00 0.00 3.69
2111 2522 5.050490 ACTAGTTGCTGCAGAATATAACCG 58.950 41.667 20.43 9.79 0.00 4.44
2209 2620 2.826428 TCTCTGTGCAGTTCACTTGAC 58.174 47.619 0.00 0.00 45.81 3.18
2223 2634 0.748450 TCGGACGGTTTGTTCTCTGT 59.252 50.000 0.00 0.00 0.00 3.41
2411 2822 4.908687 TGCTGTTGCGCGACAGGT 62.909 61.111 43.42 0.00 45.59 4.00
2720 3131 2.516460 CATGAGGCCTGGCTCTGC 60.516 66.667 12.00 1.03 0.00 4.26
2752 3163 4.208403 TGCAGTGGCTGGGCTTGT 62.208 61.111 0.00 0.00 41.91 3.16
2808 3219 5.237996 CAGGATTCTTATATGTGGCAGTGTG 59.762 44.000 0.00 0.00 0.00 3.82
2834 3245 0.535780 CAACAGTTGCAGGGCTCTCA 60.536 55.000 0.00 0.00 0.00 3.27
2911 3322 9.976511 CATATGGATTCTTATGCAAGATTTGTT 57.023 29.630 0.00 0.00 40.47 2.83
2948 3359 2.559668 CCCTACTACACTGGTCGTTTCA 59.440 50.000 0.00 0.00 0.00 2.69
3090 3501 0.387622 CAACAACTGCCCATTCTGCG 60.388 55.000 0.00 0.00 0.00 5.18
3122 3533 8.472007 AGTCATGGAAATAAGTTTTGTGGTAA 57.528 30.769 0.00 0.00 0.00 2.85
3363 3776 8.932945 AAACTCGTCATATATTCATATCGCAT 57.067 30.769 0.00 0.00 0.00 4.73
3549 4205 6.909550 AGGGAGTAGTTATGAGCTATTGAG 57.090 41.667 0.00 0.00 0.00 3.02
3584 4269 8.103305 TCCCTCCGTAAACTAATACTATACGAT 58.897 37.037 5.32 0.00 41.21 3.73
3587 4272 8.628630 ACTCCCTCCGTAAACTAATACTATAC 57.371 38.462 0.00 0.00 0.00 1.47
3591 4276 9.460019 GATATACTCCCTCCGTAAACTAATACT 57.540 37.037 0.00 0.00 0.00 2.12
3604 4289 7.070821 TGGTTTACAGAAAGATATACTCCCTCC 59.929 40.741 0.00 0.00 0.00 4.30
3621 4306 6.607689 TCTGAAACGCAATTATGGTTTACAG 58.392 36.000 13.69 13.69 33.17 2.74
3622 4307 6.561737 TCTGAAACGCAATTATGGTTTACA 57.438 33.333 1.96 0.00 33.17 2.41
3653 4338 3.746940 TCCGAGGGTGTTAAAAAGAAGG 58.253 45.455 0.00 0.00 0.00 3.46
3669 4356 3.246226 GCACACATACTGCTTATTCCGAG 59.754 47.826 0.00 0.00 0.00 4.63
3672 4359 3.194861 TCGCACACATACTGCTTATTCC 58.805 45.455 0.00 0.00 32.03 3.01
3697 4384 3.322828 ACAATTGCTTTCTCCAGTTGCAT 59.677 39.130 5.05 0.00 34.46 3.96
3701 4388 5.594317 ACAGTAACAATTGCTTTCTCCAGTT 59.406 36.000 5.05 0.00 0.00 3.16
3716 4403 9.239002 CGTTATTTTCCAAAATCACAGTAACAA 57.761 29.630 0.45 0.00 39.24 2.83
3721 4408 5.227152 GCCGTTATTTTCCAAAATCACAGT 58.773 37.500 0.45 0.00 39.24 3.55
3752 4439 7.039270 GGTTTGTTCAACATTTTTGTACCTCT 58.961 34.615 0.00 0.00 37.07 3.69
3753 4440 6.814146 TGGTTTGTTCAACATTTTTGTACCTC 59.186 34.615 0.00 0.00 37.07 3.85
3754 4441 6.592220 GTGGTTTGTTCAACATTTTTGTACCT 59.408 34.615 0.00 0.00 37.07 3.08
3755 4442 6.592220 AGTGGTTTGTTCAACATTTTTGTACC 59.408 34.615 0.00 0.00 37.07 3.34
3758 4502 7.382898 AGTAGTGGTTTGTTCAACATTTTTGT 58.617 30.769 0.00 0.00 37.07 2.83
3793 4537 7.712204 TTGGGGTCCTAAAAGAAACATAATC 57.288 36.000 0.00 0.00 0.00 1.75
3795 4539 9.603189 TTTATTGGGGTCCTAAAAGAAACATAA 57.397 29.630 0.00 0.00 0.00 1.90
3797 4541 8.679344 ATTTATTGGGGTCCTAAAAGAAACAT 57.321 30.769 0.00 0.00 0.00 2.71
3799 4543 7.399191 AGGATTTATTGGGGTCCTAAAAGAAAC 59.601 37.037 0.00 0.00 39.25 2.78
3800 4544 7.398904 CAGGATTTATTGGGGTCCTAAAAGAAA 59.601 37.037 0.00 0.00 39.01 2.52
3801 4545 6.895204 CAGGATTTATTGGGGTCCTAAAAGAA 59.105 38.462 0.00 0.00 39.01 2.52
3802 4546 6.218730 TCAGGATTTATTGGGGTCCTAAAAGA 59.781 38.462 0.00 0.00 39.01 2.52
3803 4547 6.431722 TCAGGATTTATTGGGGTCCTAAAAG 58.568 40.000 0.00 0.00 39.01 2.27
3804 4548 6.410222 TCAGGATTTATTGGGGTCCTAAAA 57.590 37.500 0.00 0.00 39.01 1.52
3806 4550 5.254267 TGTTCAGGATTTATTGGGGTCCTAA 59.746 40.000 0.00 0.00 39.01 2.69
3807 4551 4.791334 TGTTCAGGATTTATTGGGGTCCTA 59.209 41.667 0.00 0.00 39.01 2.94
3808 4552 3.596046 TGTTCAGGATTTATTGGGGTCCT 59.404 43.478 0.00 0.00 41.65 3.85
3810 4554 5.221048 CGAATGTTCAGGATTTATTGGGGTC 60.221 44.000 0.00 0.00 0.00 4.46
3811 4555 4.644685 CGAATGTTCAGGATTTATTGGGGT 59.355 41.667 0.00 0.00 0.00 4.95
3814 4558 6.639632 ATCCGAATGTTCAGGATTTATTGG 57.360 37.500 10.99 0.00 37.33 3.16
3817 4561 8.352942 GCTTAAATCCGAATGTTCAGGATTTAT 58.647 33.333 27.94 18.60 46.57 1.40
3818 4562 7.338196 TGCTTAAATCCGAATGTTCAGGATTTA 59.662 33.333 26.15 26.15 46.28 1.40
3820 4564 5.652014 TGCTTAAATCCGAATGTTCAGGATT 59.348 36.000 17.88 17.88 44.51 3.01
3824 4568 5.883661 ACATGCTTAAATCCGAATGTTCAG 58.116 37.500 0.00 0.00 0.00 3.02
3825 4569 5.414144 TGACATGCTTAAATCCGAATGTTCA 59.586 36.000 0.00 0.00 0.00 3.18
3826 4570 5.879237 TGACATGCTTAAATCCGAATGTTC 58.121 37.500 0.00 0.00 0.00 3.18
3828 4572 6.319658 AGAATGACATGCTTAAATCCGAATGT 59.680 34.615 0.00 0.00 0.00 2.71
3829 4573 6.635641 CAGAATGACATGCTTAAATCCGAATG 59.364 38.462 0.00 0.00 39.69 2.67
3830 4574 6.543465 TCAGAATGACATGCTTAAATCCGAAT 59.457 34.615 0.00 0.00 42.56 3.34
3831 4575 5.879777 TCAGAATGACATGCTTAAATCCGAA 59.120 36.000 0.00 0.00 42.56 4.30
3832 4576 5.427378 TCAGAATGACATGCTTAAATCCGA 58.573 37.500 0.00 0.00 42.56 4.55
3833 4577 5.739752 TCAGAATGACATGCTTAAATCCG 57.260 39.130 0.00 0.00 42.56 4.18
3869 4613 8.297290 TGCCACTTTGCATCAACTAAAGTTGT 62.297 38.462 19.45 7.25 44.59 3.32
3871 4615 4.099266 TGCCACTTTGCATCAACTAAAGTT 59.901 37.500 0.00 0.00 41.30 2.66
3872 4616 3.636300 TGCCACTTTGCATCAACTAAAGT 59.364 39.130 0.00 0.00 43.30 2.66
3874 4618 4.099266 AGTTGCCACTTTGCATCAACTAAA 59.901 37.500 4.36 0.00 43.60 1.85
3875 4619 3.636300 AGTTGCCACTTTGCATCAACTAA 59.364 39.130 4.36 0.00 43.60 2.24
3876 4620 3.221771 AGTTGCCACTTTGCATCAACTA 58.778 40.909 4.36 0.00 43.60 2.24
3877 4621 2.034124 AGTTGCCACTTTGCATCAACT 58.966 42.857 0.00 0.00 41.70 3.16
3878 4622 2.514205 AGTTGCCACTTTGCATCAAC 57.486 45.000 0.00 0.00 41.70 3.18
3894 4638 6.826741 AGTACCATGTGTTCACAACTAAAGTT 59.173 34.615 9.68 0.00 39.12 2.66
3895 4639 6.354130 AGTACCATGTGTTCACAACTAAAGT 58.646 36.000 9.68 4.54 0.00 2.66
3896 4640 6.861065 AGTACCATGTGTTCACAACTAAAG 57.139 37.500 9.68 0.00 0.00 1.85
3897 4641 7.121463 ACAAAGTACCATGTGTTCACAACTAAA 59.879 33.333 9.68 0.00 0.00 1.85
3898 4642 6.600032 ACAAAGTACCATGTGTTCACAACTAA 59.400 34.615 9.68 0.00 0.00 2.24
3899 4643 6.116806 ACAAAGTACCATGTGTTCACAACTA 58.883 36.000 9.68 0.00 0.00 2.24
3900 4644 4.947388 ACAAAGTACCATGTGTTCACAACT 59.053 37.500 9.68 6.04 0.00 3.16
3901 4645 5.243426 ACAAAGTACCATGTGTTCACAAC 57.757 39.130 9.68 3.92 0.00 3.32
3902 4646 4.336993 GGACAAAGTACCATGTGTTCACAA 59.663 41.667 9.68 0.00 0.00 3.33
3903 4647 3.880490 GGACAAAGTACCATGTGTTCACA 59.120 43.478 8.09 8.09 0.00 3.58
3904 4648 3.252458 GGGACAAAGTACCATGTGTTCAC 59.748 47.826 5.92 0.00 36.34 3.18
3905 4649 3.117851 TGGGACAAAGTACCATGTGTTCA 60.118 43.478 5.92 0.26 42.36 3.18
3906 4650 3.482436 TGGGACAAAGTACCATGTGTTC 58.518 45.455 5.92 0.00 42.36 3.18
3907 4651 3.117663 ACTGGGACAAAGTACCATGTGTT 60.118 43.478 0.78 0.00 46.56 3.32
3908 4652 2.441750 ACTGGGACAAAGTACCATGTGT 59.558 45.455 0.78 0.00 46.56 3.72
3910 4654 3.876309 AACTGGGACAAAGTACCATGT 57.124 42.857 0.78 1.04 46.56 3.21
3911 4655 6.834168 AATAAACTGGGACAAAGTACCATG 57.166 37.500 0.78 0.00 46.56 3.66
3913 4657 7.663043 AAAAATAAACTGGGACAAAGTACCA 57.337 32.000 0.45 0.45 45.48 3.25
3937 4681 8.845413 AGCAAATATGGCAATTTTCTAACAAA 57.155 26.923 0.00 0.00 0.00 2.83
3938 4682 9.935241 TTAGCAAATATGGCAATTTTCTAACAA 57.065 25.926 15.60 4.97 32.95 2.83
3939 4683 9.364989 GTTAGCAAATATGGCAATTTTCTAACA 57.635 29.630 27.29 12.25 45.15 2.41
3940 4684 8.817100 GGTTAGCAAATATGGCAATTTTCTAAC 58.183 33.333 26.06 26.06 45.12 2.34
3941 4685 8.757877 AGGTTAGCAAATATGGCAATTTTCTAA 58.242 29.630 15.60 15.60 34.41 2.10
3942 4686 8.305046 AGGTTAGCAAATATGGCAATTTTCTA 57.695 30.769 0.00 1.30 0.00 2.10
3943 4687 7.186570 AGGTTAGCAAATATGGCAATTTTCT 57.813 32.000 0.00 2.25 0.00 2.52
3944 4688 6.198966 CGAGGTTAGCAAATATGGCAATTTTC 59.801 38.462 0.00 0.00 0.00 2.29
3945 4689 6.042143 CGAGGTTAGCAAATATGGCAATTTT 58.958 36.000 0.00 0.00 0.00 1.82
3947 4691 4.499696 GCGAGGTTAGCAAATATGGCAATT 60.500 41.667 0.00 0.00 34.19 2.32
3948 4692 3.004734 GCGAGGTTAGCAAATATGGCAAT 59.995 43.478 0.00 0.00 34.19 3.56
3949 4693 2.357637 GCGAGGTTAGCAAATATGGCAA 59.642 45.455 0.00 0.00 34.19 4.52
3950 4694 1.946768 GCGAGGTTAGCAAATATGGCA 59.053 47.619 0.00 0.00 34.19 4.92
3951 4695 1.266989 GGCGAGGTTAGCAAATATGGC 59.733 52.381 0.00 0.00 36.08 4.40
3952 4696 2.549754 CAGGCGAGGTTAGCAAATATGG 59.450 50.000 0.00 0.00 36.08 2.74
3953 4697 3.466836 TCAGGCGAGGTTAGCAAATATG 58.533 45.455 0.00 0.00 36.08 1.78
3954 4698 3.838244 TCAGGCGAGGTTAGCAAATAT 57.162 42.857 0.00 0.00 36.08 1.28
3955 4699 3.055385 AGTTCAGGCGAGGTTAGCAAATA 60.055 43.478 0.00 0.00 36.08 1.40
3956 4700 2.084546 GTTCAGGCGAGGTTAGCAAAT 58.915 47.619 0.00 0.00 36.08 2.32
3957 4701 1.071699 AGTTCAGGCGAGGTTAGCAAA 59.928 47.619 0.00 0.00 36.08 3.68
3958 4702 0.685097 AGTTCAGGCGAGGTTAGCAA 59.315 50.000 0.00 0.00 36.08 3.91
3959 4703 1.552578 TAGTTCAGGCGAGGTTAGCA 58.447 50.000 0.00 0.00 36.08 3.49
3960 4704 2.667473 TTAGTTCAGGCGAGGTTAGC 57.333 50.000 0.00 0.00 0.00 3.09
3963 4707 3.139077 CAACTTTAGTTCAGGCGAGGTT 58.861 45.455 0.00 0.00 35.83 3.50
3964 4708 2.767505 CAACTTTAGTTCAGGCGAGGT 58.232 47.619 0.00 0.00 35.83 3.85
3965 4709 1.464997 GCAACTTTAGTTCAGGCGAGG 59.535 52.381 0.00 0.00 35.83 4.63
3968 4712 1.234821 TGGCAACTTTAGTTCAGGCG 58.765 50.000 0.00 0.00 35.83 5.52
3970 4714 5.452078 TTTCATGGCAACTTTAGTTCAGG 57.548 39.130 0.00 0.00 35.83 3.86
3971 4715 5.403466 GCTTTTCATGGCAACTTTAGTTCAG 59.597 40.000 0.00 0.00 35.83 3.02
3972 4716 5.163468 TGCTTTTCATGGCAACTTTAGTTCA 60.163 36.000 0.00 0.00 35.83 3.18
3974 4718 5.275067 TGCTTTTCATGGCAACTTTAGTT 57.725 34.783 0.00 0.00 39.12 2.24
3975 4719 4.935352 TGCTTTTCATGGCAACTTTAGT 57.065 36.364 0.00 0.00 35.40 2.24
3977 4721 4.617995 CGGATGCTTTTCATGGCAACTTTA 60.618 41.667 0.00 0.00 41.90 1.85
3978 4722 3.667360 GGATGCTTTTCATGGCAACTTT 58.333 40.909 0.00 0.00 41.90 2.66
3979 4723 2.353011 CGGATGCTTTTCATGGCAACTT 60.353 45.455 0.00 0.00 41.90 2.66
3980 4724 1.203052 CGGATGCTTTTCATGGCAACT 59.797 47.619 0.00 0.00 41.90 3.16
3982 4726 0.531657 CCGGATGCTTTTCATGGCAA 59.468 50.000 0.00 0.00 41.90 4.52
3983 4727 1.321805 CCCGGATGCTTTTCATGGCA 61.322 55.000 0.73 0.00 42.80 4.92
3984 4728 1.322538 ACCCGGATGCTTTTCATGGC 61.323 55.000 0.73 0.00 35.05 4.40
3985 4729 1.135024 CAACCCGGATGCTTTTCATGG 60.135 52.381 0.73 0.00 35.05 3.66
3986 4730 1.736696 GCAACCCGGATGCTTTTCATG 60.737 52.381 20.81 0.00 40.64 3.07
3989 4733 1.215382 GGCAACCCGGATGCTTTTC 59.785 57.895 25.07 10.15 43.34 2.29
3991 4735 1.305213 ATGGCAACCCGGATGCTTT 60.305 52.632 25.07 13.92 43.34 3.51
3992 4736 2.053865 CATGGCAACCCGGATGCTT 61.054 57.895 25.07 14.20 43.34 3.91
3993 4737 2.440796 CATGGCAACCCGGATGCT 60.441 61.111 25.07 9.41 43.34 3.79
3994 4738 4.211502 GCATGGCAACCCGGATGC 62.212 66.667 20.17 20.17 43.08 3.91
3995 4739 0.751277 TAAGCATGGCAACCCGGATG 60.751 55.000 0.73 2.24 0.00 3.51
3996 4740 0.033601 TTAAGCATGGCAACCCGGAT 60.034 50.000 0.73 0.00 0.00 4.18
3998 4742 0.605589 TTTTAAGCATGGCAACCCGG 59.394 50.000 0.00 0.00 0.00 5.73
3999 4743 2.539476 GATTTTAAGCATGGCAACCCG 58.461 47.619 0.00 0.00 0.00 5.28
4002 4746 4.143137 CGTTTGGATTTTAAGCATGGCAAC 60.143 41.667 0.00 0.00 0.00 4.17
4003 4747 3.993081 CGTTTGGATTTTAAGCATGGCAA 59.007 39.130 0.00 0.00 0.00 4.52
4004 4748 3.006323 ACGTTTGGATTTTAAGCATGGCA 59.994 39.130 0.00 0.00 0.00 4.92
4005 4749 3.584834 ACGTTTGGATTTTAAGCATGGC 58.415 40.909 0.00 0.00 0.00 4.40
4007 4751 6.093495 TCCTAGACGTTTGGATTTTAAGCATG 59.907 38.462 0.00 0.00 0.00 4.06
4008 4752 6.177610 TCCTAGACGTTTGGATTTTAAGCAT 58.822 36.000 0.00 0.00 0.00 3.79
4017 4761 8.980481 AAATGATAAATCCTAGACGTTTGGAT 57.020 30.769 10.74 10.74 42.28 3.41
4018 4762 7.223971 CGAAATGATAAATCCTAGACGTTTGGA 59.776 37.037 7.41 7.41 35.13 3.53
4019 4763 7.011109 ACGAAATGATAAATCCTAGACGTTTGG 59.989 37.037 0.00 0.00 0.00 3.28
4020 4764 7.906160 ACGAAATGATAAATCCTAGACGTTTG 58.094 34.615 0.00 0.00 0.00 2.93
4024 4768 7.932120 AGAACGAAATGATAAATCCTAGACG 57.068 36.000 0.00 0.00 0.00 4.18
4033 4777 8.178964 CGGGACATAAAAGAACGAAATGATAAA 58.821 33.333 0.00 0.00 0.00 1.40
4034 4778 7.201661 CCGGGACATAAAAGAACGAAATGATAA 60.202 37.037 0.00 0.00 0.00 1.75
4035 4779 6.259167 CCGGGACATAAAAGAACGAAATGATA 59.741 38.462 0.00 0.00 0.00 2.15
4036 4780 5.065988 CCGGGACATAAAAGAACGAAATGAT 59.934 40.000 0.00 0.00 0.00 2.45
4037 4781 4.393680 CCGGGACATAAAAGAACGAAATGA 59.606 41.667 0.00 0.00 0.00 2.57
4040 4784 3.075884 CCCGGGACATAAAAGAACGAAA 58.924 45.455 18.48 0.00 0.00 3.46
4041 4785 2.302445 TCCCGGGACATAAAAGAACGAA 59.698 45.455 22.63 0.00 0.00 3.85
4042 4786 1.901159 TCCCGGGACATAAAAGAACGA 59.099 47.619 22.63 0.00 0.00 3.85
4196 7041 3.764434 TGTTGTGGTAAAGGCTTCAAACA 59.236 39.130 0.00 0.00 0.00 2.83
4238 7083 1.227999 CCGCACCGTGATCACAAGTT 61.228 55.000 24.93 3.32 0.00 2.66
4244 7201 3.932580 GAGCACCGCACCGTGATCA 62.933 63.158 1.65 0.00 46.10 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.