>input_sequence_35085
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-----------------CCGGCTCTCTCGCT-------------------------------------------------
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--------------------CGCGCACCAACCCAAAACCCTAGCCAGCCCGCACGCCCATGGCGTCGTCCCCCGCGCGCC
CCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCGACCAGACGCGCCGCCGCGCC
GAGGTACGTCCT----CTCTGCCTATCTCTCTGTCTGTCTGTCGTCATCCATCTCCCTCCTACTACCACCACCACGCGAG
GTCCCTCGATCTCGGGG-GTTTCTGAGGCGGGGGTTGATGCGTGTGTGAGCGGGGAAAGCAGGATTCGCAGGACAAGAGG
CAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTCATGGCGGCCGTCGAGGAGTG
CATGAGGAAGCAGGCCGAGGGACTGCTGCATTCGCTCGAGGGCATCGGGGGGAGGCTCTCGCAGCTCGAGCTCTACTGCT
ACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTACCACAGCGAGGGCACCGTCAACTTCCGCTGC
CTCGACAAGAATCTCAGACAGGTACGTGCTCTGCCCCGCCCCGCCTTCAGATCCACGCACGCTCTGCCAATTACTGCCGA
ATGTCTTGCTCTCGTCTCGAGTGCCCCGGCTCTGTTAGTCGAGGCACTATTCAGATTTCACCTTTGAGATTGTA------
-------------GTGGTGCTTAAGGAGTTACTTCAGCGGAACATTTTCACAAGCTGCTATTCTTAAACTACGTACGGTG
GAG--------TCAGACTTACTGTTCTCGTGAGATTTGGATCATTTTTGATGCATTAAGAATATGTCTCTGAGCTGAACA
ATCCTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAGCCTGCTGACACGGCG-----
-------CAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTAGAACAAATGAAGCCACTGCCTTGTCGATGC
TTGCTTCAAGGGAAAATGTCAACGATCAGAGCACACAATTCGCCAACCCTGAGGTTTCTTTTGTGCCAATTCACCAAGTT
AATACCATGCAGTCTCCTGCTATGCCGAACCAAAGTAGCGGCGGTTATATTCTGCAGCAACTAGTGCCCGTCTCTTTGAG
CACGCAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAGTCAAGTGAACTGCACAGAGA
ACAAACCGTCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACCCTGAAGCCAGGGTTGCAGTTGAGCTACCT
CAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCACTGCAGCATCATATGCTACAAATGCCTGCTCAGCATCACGAGTC
ACAGGCATGGCGATCACAGCCACCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCAAGTCCCACCACAGATGGTTCAAC
AGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACGCTCATGTATCCTCAATACTCTTCTCAGAAGCCTGCC
AATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCCCAGCAGAAGCATCATGAAGT
CATGCCTTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATATCCAGCATCAACAGCCACAGC
AACTGCAAACGCAGAGCCAGGCCTCATGCCCACCTCAACCAAACAAGCCCAGCCACTGCAGTGTTGCATCATATGCTGTT
CAGGGTAGTGGCCGAGCCCACACTGCCACATATAAGAATCCTGCTGAGAGCCCTGCAACTGTTGTTGCTGTTCTGCCTCA
GCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCAACAAATCTTGCATAAGAATCCATATGGAAGTATGTTTG
AAACGACCAGTGTAGTAGGGTATCCACATGATCTGGTTGGGAGTATGACGCTTCCAGTGGTGACTGCGGACTCCAGTAAC
ATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAGCGCAGAATGGGCAGTTGTTG
GGTACTTCATTGTTACCACAAAACTTATTTCCATGACTATAGCTGGAAGCTTGTCGGCTCTCACCCGGGTATTTCATCTG
GCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTG--TTTTTTCTGCTGAAGGGTCAATCTGAAATAAAA
ATGATAGATTAGT-------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G305700
ACAACTGTGACATCCGTTCTTTGGGACAACGCCAGCGTGACAAACATGCAAAAGAAAAAACACCATCTTTCACACATCTT
TCAAAGATGCCAAGAAGCATCATCAAAACAAGGACAAGACGGGAAGGCCTTCTTCCATTTCGATGGCGGCATTATCGCCT
CAATACCGATGACCAGCGACCGAAATCTACACCTAAACTAAAAACCTCACCCTACCATCACCA-CGGGTTCGAAACAACG
GGGTCTTGACCTCTTCCCTCCGTCAAAGTGGCAAACGAAGGG-------GCCCATGATCTCACCAGGGAGAAGGTAGATT
GCCCCCCACACCCTAGCTGCTAGGGTTTCCCCCAAGAGAGGAAGGAGGTATGAATTTCACGGTTTGTTTTTCGTAGACGT
AGACGCCTCTCGAATCAAACTATTAA-TCCCCAGCGATCAGAGGATCACCGTGATACCGACAACTCTAATATGC-TACTG
ATACCGGCCGCATCTTCCCATCAAAACCAGTGTGGCAAACGCAGACCCATC-------------CACGCACATTTCTTTT
TAATCACGCACATGACTCACGAGATGGAGACCTGAGCGTGACACTGCACCCAACCCAACC--------------------
----------AAACCCAAGCTGACCCGAACCAACCAGACCGTCTCCCGTCTTGATCTGAAAACGATCGTCCAGCAAGGCA
AGCAAGGTATCCCAATGGCGATCTCC---CTGCTGGCCGTCAGTAAACAAACGAACACGGCCACACATCCAAGTCGAACC
AGATCTCACTCGCCCCGAAGTCCACCCACGCTCCCTCTTTCCCCACTTGTCCCCGTCGTCCCGTCGCCCTCC-CCATTTT
TATTGCTCCCCACGCCTCGATCTCGCCTCGCCTCCGCTCCTCTGATTGGCCTCTCCTCTGTTTCACTCTGCTTTTCCCTT
TGCCCGCTTTGCTTCTACTCCTCTCACTCGCCCGCCCGCCTCTCTTTCCTCGCCCCTTCCTTCGCTTCGGATTCCCTCCC
ATCCCGTCCCCTCCCCCCCGGCTCTCTCGCT-------------------------------------------------
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--------------------CGCGCACCAACCCAAAACCCTAGCCAGCCCGCACGCCCATGGCGTCGTCCCCCGCGCGCC
CCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCGACCAGACGCGCCGCCGCGCC
GAGGTACGTCCT----CTCTGCCTATCTCTCTGTCTGTCTGTCGTCATCCATCTCCCTCCTACTACCACCACCACGCGAG
GTCCCTCGATCTCGGGG-GTTTCTGAGGCGGGGGTTGATGCGTGTGTGAGCGGGGAAAGCAGGATTCGCAGGACAAGAGG
CAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTCATGGCGGCCGTCGAGGAGTG
CATGAGGAAGCAGGCCGAGGGACTGCTGCATTCGCTCGAGGGCATCGGGGGGAGGCTCTCGCAGCTCGAGCTCTACTGCT
ACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTACCACAGCGAGGGCACCGTCAACTTCCGCTGC
CTCGACAAGAATCTCAGACAGGTACGTGCTCTGCCCCGCCCCGCCTTCAGATCCACGCACGCTCTGCCAATTACTGCCGA
ATGTCTTGCTCTCGTCTCGAGTGCCCCGGCTCTGTTAGTCGAGGCACTATTCAGATTTCACCTTTGAGATTGTA------
-------------GTGGTGCTTAAGGAGTTACTTCAGCGGAACATTTTCACAAGCTGCTATTCTTAAACTACGTACGGTG
GAG--------TCAGACTTACTGTTCTCGTGAGATTTGGATCATTTTTGATGCATTAAGAATATGTCTCTGAGCTGAACA
ATCCTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAGCCTGCTGACACGGCG-----
-------CAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTAGAACAAATGAAGCCACTGCCTTGTCGATGC
TTGCTTCAAGGGAAAATGTCAACGATCAGAGCACACAATTCGCCAACCCTGAGGTTTCTTTTGTGCCAATTCACCAAGTT
AATACCATGCAGTCTCCTGCTATGCCGAACCAAAGTAGCGGCGGTTATATTCTGCAGCAACTAGTGCCCGTCTCTTTGAG
CACGCAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAGTCAAGTGAACTGCACAGAGA
ACAAACCGTCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACCCTGAAGCCAGGGTTGCAGTTGAGCTACCT
CAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCACTGCAGCATCATATGCTACAAATGCCTGCTCAGCATCACGAGTC
ACAGGCATGGCGATCACAGCCACCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCAAGTCCCACCACAGATGGTTCAAC
AGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACGCTCATGTATCCTCAATACTCTTCTCAGAAGCCTGCC
AATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCCCAGCAGAAGCATCATGAAGT
CATGCCTTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATATCCAGCATCAACAGCCACAGC
AACTGCAAACGCAGAGCCAGGCCTCATGCCCACCTCAACCAAACAAGCCCAGCCACTGCAGTGTTGCATCATATGCTGTT
CAGGGTAGTGGCCGAGCCCACACTGCCACATATAAGAATCCTGCTGAGAGCCCTGCAACTGTTGTTGCTGTTCTGCCTCA
GCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCAACAAATCTTGCATAAGAATCCATATGGAAGTATGTTTG
AAACGACCAGTGTAGTAGGGTATCCACATGATCTGGTTGGGAGTATGACGCTTCCAGTGGTGACTGCGGACTCCAGTAAC
ATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAGCGCAGAATGGGCAGTTGTTG
GGTACTTCATTGTTACCACAAAACTTATTTCCATGACTATAGCTGGAAGCTTGTCGGCTCTCACCCGGGTATTTCATCTG
GCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTG--TTTTTTCTGCTGAAGGGTCAATCTGAAATAAAA
ATGATAGATTAGTCTAGTGATGATGCTGGCGTATGTCCTCACTTTTAATGGACATATCTTGCTTGTAACCGACAGTTGGC
GATGAACCTGTGCCTATGCGATATGAATATATGACGAGTTTACATCATCTTATCAGCTGTTTAAATATTGGTTTACCACA
GTTTATGTAGTCTTGTCATGCCATATTTTTTATTTATTTATCTGGGTTTTTGTAGCATGTAGAGTAGTAAAGAAGAAAAG
AGCTCAGATA----------------------------------------------------------------------
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-------------TATATGTATCTAGGCATCTCAAAATTAACTTCTCAATAGCTCATAACTACTCCCTTGA---------
--------------------TCTAAAAGATCGTATAGTATTAGTTTACGGAGGGAGTATATCTTTCTGTAAACCATAATT
GCGTTTCAGATGTAGCACCTTC--TTTTTAACACCCTCGGAATAAGCAGTATGTGTGCGAACAATGCAACTGGAGAAAGC
AATTGTTACTGTGATTTTGGAAAATAACGGCCGGAACTAGAG--------------------------------------
-------------------GTACAAAAATGTTGAACAAACCACTACTTGCTAGTAAGATTATGTTTCTTTTAGGACCCCA
ATAAATCCTGAACATTCGGATTTAAGCATGTCATTCTGAACGTTTTTTGATGACAACTTTAGTTGATGCAAAGTGGCAAC
TTTAGTTGTGAACACATGGTACTTTGTCCCAGTTTATTTTTTTGTTAGAAAATTGCCATATTTGCTAACCTCGCCTGAAC
TAAAGTTGCCATGAAAAGCATCCGGGTTGCCATGCTTAAAATCCAAACGTCTAGGATTTATCATTTCGTTC---------
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------------------------------TTTTATGTCCCGGGACAATAAGATTGGTCGTTCATAGCAAAGTTATG---
--------------------------------AGTTGCATATATTGCGT---------------------GCTATTCCAA
GTTTGTTCAGAAG----------------------------AGACTCCAGTATTTTACATGACACCGACCAATTCGCTAT
GGCAGCGTAGATGCTA----------------------------------------------------------------
--------------------------------------------------------------------------TATAAA
TGTTTGAAGCCTTTACCACAACAACCAAATACTACTACCTGGAAC-----------------------------------
-----------------------------------------------------------------------------TTG
TGATCACGGTGCGGTGCTCGGTAAAACTGCTGATTCA
>chr3D_1
ACAACTGTGACATCCGCTCTGTGGGACAACGCCACCGTGACAAACATCCA----AAAAAACACCATCTTTCACACACCTT
CTAAAAATGCCAAGAAGCATCATCGAAACAAGGACAAGACGGGAAGGCCTTATTCCATTTCGATGGCGGCGTTATCGCCT
CACTGTTGATGATTAGGGACTGAAACCTACACCTAAACTAAAAACCTCACCCTACCATCACCATCGGTTCGGAAACAACA
GGGTCTCGGCCCCTTCCCTCCGTCAAAGTGGCAAACGAAGGGAAAAGAGGCCCCTGAACTCACCAGGGAGAAGGTAGATC
GTCGCCTTCGCCCTAGCTGCTAGGGTTTCCCGGGAGAGAGGAAGGAGGTACGAACTTTACATG-TGTTTTTCATAGACAT
AGACGCCTCTCGAATAAACCTATTAATTCCCCAGCAATCAGAGGATCACCGTGATACCGACGGCTCTAATATGCTACTGA
---------------------------------------------------------------TCACGCACATTTCTTTT
TAATCACGCACATGACTCACGAGGCGGAGACCTGAGCGTGACACTGCACCCAACCCAACC--------------------
----------A-------------------------GACCGTCTCCCGTCT-GATCTGAAAACGATCGTCCAGCAAGGCA
AGCAAGGTATCCCAACGGCGATCTCCCTGCTGCTGGGCGTCAGTAAACAAACAAGCACGGCCACA--TCCAAGTCGAACC
AGATCTCACTCGCCCCGAAGTCCACCCACGCCCCCTCTTTCCCCACTTGTCCCCGTCGTCCCGTCGCCCTCCCCCATTTT
TATTGCTCCCCACGCCTCGATCTCGCCTCGCCTCCGCTCCTCTGATTGGCCTCCCCTCTGTTTCACTCTGCTTTTCCCTT
TGCCCGCTTTGCTTCTACTCC--------GCCCGCCCGCCTCTCTTTCCTCGCCCCTTCCTTCGCTTCGG----------
ATTCCCTCCCATCCCCCCCGGCTCTCCCAC--------------------------------------------------
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-------------------CCGCGCACCAACCCAAAACCCTAGCCAGCCCGCGCGCCCATGGCGTCGTCCCCCGCGCGCC
CCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCGACCAGACGCGCCGCCGCGCC
GAGGTACGTCCTGC----CTGACTATCTCTCTGTCTGTCTGTCGGCCTCCATCTCCCTACTACTACCACCACCACGCGAG
GTCCCTCGATCTCGGGC-GTTTCTGAGGCGGGGGTTGATGCGTGTGTGAGCGGGGAAAGCAGGATTCGCAGGACAAGAGG
CAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTCATGGCGGCCGTCGAGGAGTG
CATGAGGAAGCAGGCCGAGGGCCTGCTGCATTCGCTCGAGGGCATCGGCGGGAGGCTCTCGCAGCTCGAGCTCTACTGCT
ACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTACCACAGCGAGGGCACCGTCAACTTCCGCTGC
CTCGACAAAAATCTCAGACAGGTA----------CCTGCCCCGCCTTCAGATCGACGCACGCCCACCCAATTACTGCCAA
ATGTCTTGCTCTCGAGTACCCAATTAGTTGAGG------------------CAGATTTCACCATTGAGCATTTGCGTTTC
ACGTTTGTCTTGTGTGATGCTTAAGGAGTCACAGCGGAACAA---TTTCACAGGCTGCTATTCTTAAACTACGTACGGTG
GAGTCAGACACTCAGACTTACTGTTCTCGTGAGATTTGGATCATTTTTGTCACATTAAGAATATGTCTCTGAGCTGAACA
ATCGTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAGC------------CGGCCGA
CACGGCGCAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTCGAACAAATGAAGCCACTGCCTTGTCGATGC
TCACTGCAAGGGAAAATGTCAATGATCATAGCACACAATTCACCAACCCTGAGGTTTCTTTTGTGCCAATTCACCAAGTT
AATACCATGCAGTCTCCTGCTATGCCGAACCAAAGTAGCGGTGGTTATATTCTGCAGCAACTAGTGCCCGTCTCTTTGAG
CACGCAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAATCAGGTGAACTGCGCAGAGA
ACAAACCGTCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACCCTGAAGCCAGGGTTGCAGTTGAGCTACCT
CAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCACTGCAGCATCATATGCTACAAATGCCTGCTCAGCATCACGAGTC
ACAGGCATGGCGATCACAGCCCCCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCCAGTCCCACCACAGATGGTTCAAC
AGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACGCTCATGTATCCTCAATACTCTTCTCAGAAGCCTGCC
AATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCCCAGCAGAAGCATCATGAAGT
CATGCATTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATATCCAGCATCAACAGCCACAGC
AAATGCAAACACAGAGCCAGGCCTCATGCCCACCTCAACCAAGCAAGCCCAGCCACTGCAGTGTTGCATCATATGCTGTT
CAGGGTAGTGGCCGAGCCTACACTGCCACATATAAGAATCCTGCCGAGAGCCCTGCAACTGTTGTTGCTGTTCTGCCTCA
GCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCCACAAATCTTGCATAAGAATCCATATGGAAGTATGTTCG
AAACGACCAGTGTAGTAGGGTATCCACATGATCAGGTTGGGAGTATGACGCTCCCAGTGGTGACTGCGGACTCCAGTGCC
ATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAGTGCAGAATGGGCAGTTATTG
GGTACTTCATTGCTACCACAAAACTTATTTCCATGACTATAGCTGGAAGCTTGTCGG--CTCACCCGGGTATTTCATCTG
GCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTCTCTTTTTTCTGCTGAAGGGTCAATCTGAAATAAGA
ATGATAGATTAGTCTAGTGATGATGCTGGCATATGTCCTCACTTTTAATGGACATATCTTGCTTGTAACCGACAGTTGGC
GATGAACCTGTGCCTTTGCGATATGAATATATGACGAGTTTACATTATCTTATCAGCTGTTTAAATATCGGTTTACCACA
GTTTATGTAGGCTTGTCATGCCATATTATTTATTTATTTATCTGGGTTTTTGTAGCATGTAGAGTAGTAAAGAAGAAAAG
AGCTCAGATA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------TATATGTATCTAGGCATCTAAAAATTAACTTATCAATAGCTCATAACTACTCCCTTGA---------
--------------------TCTAAAAGGTCTT---GTATTAGTTTACAGAGGGAGTATATCTTTTCATAAACCATAATT
GC-TTTCAGATGTAGCAACTTTCATTTTTAACACC-TCAGAATAAGCAGTATGTGTGCGAACACTGCCACTGGAGAAAGC
AAGTGTTGCTGTGATTTTGGAAAATAACGGCCGGAAGTTCTCTCTTGGAGGAAGAACTGTAGAGTAC-------------
------------------------AAATTTTTGAACAAACCACTACTTGCAAGTAACACTGTTCCAGCTACTGCTCCTTA
GAGCATCTCCACTCGCGCCTCCAACAAGCCCCCCAGGGCGTGTTTTTTGGCGCCGGCGACGAAAAAAAACTCTAGTCGCG
CCCCAAGAACGCCGAAATCCGCCGGCTCGGCCCATATTTTGGCCCGGCGATCCCAGGCCGAACCCTGCGCTTGGGGGCTC
CGGCGAAAGAATAACCGCGCTTGGGCCACCACTGTCAGGTGAAAAAAGCATCTCGCACGTACACGACTTTCGCCGCCATA
CACGAACACGACTTTCGCCGCCATACACGAACACGACTTTCGCCGCGCACACATGACTTTCGCCGCCGTACCGAACCTGC
CGCCACCTACCTACCCACCGCCGCTAGAAAGGCCATTCCCCCGTCGGAAAAGAGAGGGTTCACCGTGGCACCCTCCACCC
CGCTCCTGGACGAGCTTCCCGGCGCTCCGGCCACGCAGGACGGGGTTACCGACGGCTGCGCGCCTACCATGCCCACCAGG
TGTTCGGCGATTTGTCTGCTCGATGATGGACTCGAACGACGAGGAGGCGTTCACGGCGCTGCTGGAGGAGGAAGCCGATG
CCGACGCCCAAGGCGAAGAGCATCTCATGGTCCTCACCACTCTGGCCAGCCTGTTCGCGAGCAATGCAAAGCCGCGGCGA
GGTGGCTCGGCGCCGGGCCGGCTGAAGGCAAAGCAGAGGCATCGACTGGAAGGCTATTGCTTGCTCTACGCCGACTACTT
CACCGACGCTCCACTGCACGGCGAGCGGCGCCGTTATCGGATGAGCCGAAAGCTCTTCCTCAGGATTGTGAATTCCATTC
GTGAGTTCGACAACTACTTCAAGTGCAAGAAGGATTGCACCGGCACACTTGGATTCACCTCACTCCAGGAGTGCACGACA
GCTATGAGGATGCTTGCATACGGAGCTCCCAGTGATTCACTGAAAGACTATGGACGCATGGCCGAGTCCACGACCATTGA
GTGTTTGTACAAGTTCTGCAGGGCAGTGGTGGCAGTGTTTGGACCTCAATACTTGCGATCACCTAATGCTAAAGACACTG
CTCGGATCCTAGCACAGAATGCAGCAAGAGGATTTCCTAGGATGCTTGGAAGCATTGACTGCATGCATTGAAAATGGAAA
AACTGTCCATTTGCTTGGTAGGGGATGTACAAAGGCGCCAAAGGCGGATGCAGTGTGGTACTTGAGACAGTGGCCACACA
GGACCTCTGGATTTGGCACTCCTTCTTTGGTATGCCAGGAACTCACAATGACATCAACGTACTGTAGTGCTCCCCTATCT
TTGCCAAGCTTGTTGAAGGTCATGCTCCTCCGGTGAACTTCGAGGTCAATGGGCGCCACTACAGCAAGGGATACTACCTA
GCAGATGGCATCTATCCGAGATGGTCCACATTTGTGAAGACTATCTCAAACCCTGTGCCAGGAGGCAAGAACTCCTACTT
TGCCAAGTGTCAGGAGGCTTGTAGGAAGGATGTCGAGCGGGCATTTGGTGTGCTCCAATCTCGATTTGCTCTTGTCCGGT
ACCCCGCTCAGACCTGGTCAAAATATCAAATGTGGGAGGTCATGACTTGCTGTGTCATCTTGCACAACATGATCATTGAG
AGTGAGCAGGAAGAGCCAGTGTTTAACACTGAACCATATTACAGGCAGGGTCCTTTTGCCCAAGTTGATCACCAGCTACC
GGCAACCTGGACTGCCTTCCTCAATATGTGTCAGGAGATCCGAGACCCACAGATGCATCAACAACCGCAACACGATCTAA
TGGAGCGCCTATGGAGGCTCAAGGGCAACGCCTAGCTCGACGCGTGATGAAATATGAGTTTTTATTTATTGAAGTATTTG
ATTGTATTGATTTGTTGAACTATTTGATTTGTATTATTTTTTGTGATGAACTATGTGATAGCTTCTGTTGAATTTTGTCT
CGAAGCACGCTGAAATTGGTCCAATTTGTGCTGAAAATGGGCCGACGGTGAGCCGAAATCGGAGCCTGAGAGGTGGGAAA
CTGACCGCCCCACGCCAATTTTTCCGCCAGTACGCCCCAGGCGGCACTATTTTAAGCCCCTGGAGTGCCGAACAAGTGGA
GATGTGCAAACAGAGCAAGATTGTGTTACTTTTTATGTCCGGGAACAACAAGATTAGTCGTTCATAGCGAAGTTACG---
--------------------------------AGTTGCATATATTGCGTGTGGTTGGTAGGCAACGT---GCTATTCCAA
GTATG------------TTTTGGCCTTATTGTCTTGGAAAGAGACTCCAATATTTTA-ATGACACTGATCAATTCGCTAT
GGCAGCATAGATGCTACTCCCTTGTGACTTACACATCGTATTTAGACAAATATAAGACAAGAATTTTAAGGAGGAAGTAT
ATAAAAGTTTGAAGCCTTTACCCCAACAACCAAATACTACTACCTGGTACAAGAATTTTGAGACGGAGGGAGTATATAGA
AGTTTGAAGCCTTTACCACAACAACCAAATACTACTACCTGGTACGCTGCTCCCTCGTGACTTGATATATCCGTATTTAA
ACAAATCTAAGACAAGAATTTTAAAACGGTTTGAAGCCTTTTACCACAACAATCAAATAATACTACCTGGAACAACTTTG
CGATCACGGTGCGGTGCTCGGTAAAACTGCTGATTCA
>chr3A_377
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----------------------------------------------------------------TGTTTTTCATAGACAT
AGACGCCTCTCGAGTCAAACTATAATTCCCTG-GCGATTAGAGGATCATCGTGATACCGACAGCTCCAATATGCTTACTG
ATACCGGCCACATCTCCCCATCAAAACCGGTGTCACAACCAGCGTGGCAAACCCAATACCCGTTCACGCACATTTCTTTT
GAATCACGCACATGACTCACGAGGCGGAGACCTGAGCGTGACGCTGCACCCAACCCAACCCAACCAAACCCAAGCTGACC
CGAACCAACCA-------------------------GGCCCTCTCCCGTCTTGATCTGAAAACGATCGTCCAGCAAGGCA
AGCAAGGTATCCCAATGGCGATCTCCTCCCTGCTGGGCGTCAGTAAACAAACGAGCACGGCCACA--TCCAAGTCGAAGC
AGATCTCACTCGCCCTGAAGTCCACCCACGCCCCCTCTTTCCCCACTTGTCCCCGTCGTCCCGTCGCCCTCCCCCATTTT
TATTGCTCCCCACGCCTCGCG----------CTCCGCTCCTCTGATTGGCCTCCCCTCTGTTTCACCCTGCTTTTCCCTT
TGCCCGCTTTGCTTCTACTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAACCGCGCACCAACCCAAAACCCTATCCGGCCCGCGCGCCCATGGCGTCGTCCCCCGCGCGCC
CCGCCGCCGCGTCCGTCTCCGGCGCCTTCGGCCTCCCGCCCGACGCCCGCTGCTCCTTCGACCAGACGCGCCGCCGCGCC
GAGGTACGTCCTGTCTCTCTGTCTCTCTGTCTGTCTGCCTGCCGGCCTCCATCTCCCTACTACTACCACCACCACGCGAG
GTCCCTCGATCTCGGGGGGTTTCTGAGGCGGGGGTTGATGCGTGTGTGGGCGGGGAAAGCAGGATTCGCAGGACAAGAGG
CAGCTGGTGCGGACGTTCGTCAACGTGTACGGCCAGGAGGGCTACCCCAAGGAGGCCGTCATGGCGGCCGTCGAGGAGTG
CATGAGGAAGCAGGCCGAGGGCCTGCTGCATTCGCTCGAGGGCATCGGCGGGAGGCTCTCGCAGCTCGAGCTCTACTGCT
ACAAGCTCGAGCGCTCCATCGGGGAGCTGCGCAGCGACGTCATGGACTATCACAGCGAGGGCACCGTCAACTTCCGCTGC
CTCGACAAGAATCTCAGACAGGTGCGTGCTCTGCTCTGCCC-----TCAGATCCACGCACGCCCAGCCAATTACTGCCAA
ATGCCTTGCTCTCGAGTACCCAATTAGTTGAGG------------------CAGATTTCACCATTGAGCATTTGCGTTTC
ACGTTTGTCTTGTGTGGTGCTTAAGGAGTTACTTCAGCGGAACATTTTCACAGGCTGCTATTCTTAAACTACGTACGGTG
GAGTCG--------GACTTACTGTTCTCGTGAGATTTGGATCATTTTTGCTGCATTAAGAATATGCTTCTGAGCTGAACA
ATCGTTTCTTCTGTTGACCAGGTTCAGAAAGCTGTGCAGATGCTTCAGGATAAGCATGAGC------------CG-----
-------CAGCAACTGGCCAAACTTCAAATAGCGCATGAATTCCCTGCTAGAACAAATGAAGCCACTGCCTTGTCGATGC
TCGCTGCAAGGGAAAATGTCAATGATCAGAGCACACAATTCGCCAACCCTGAGGTCTCTTTTGTGCCAATTCACCAAGTT
AATGCGATGCAGTCTCCTGCTATGCCGAACCAAAGTAGTGGTGGTTATATTCTGCAGCAACTTGTGCCCGTCTCTTTGAG
CACACAACATGATCAGCAACATCCGAGCCAAGCTGCGGTGTACTATATGCAAAGCCAAAATCAAGTGAACTGCGCAGATA
ACAAACCATCCGAGTCTTTTGTTCAGGTTATGCAGCCGCATGTCCAGAACTCTGAAGCCAGGGTTGCAGTTGAGCTACCT
CAGAAATCTAGTCAGCCAACGGAAATGTACCCTCCAATGCAGCATCATATGCTACAAATGCCTGCTCAGCATCACGAGTC
ACAGGCATGGCGATCACAGCCCCCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCAAGTCCCACCGCAGATGGTTCAAC
AGAAAACATCTTCTCCTCATGCTCAAAGTACTCCTCAAGTCACACTCATGTATCCTCAATACTCTTCTCAGAAGCCTGCC
AATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTTGGGCAGTCTCCATACTCTTCACCCCAGCAGAAGCATCATGAAGT
CATGCCTTCGTTTTATGGCCAAGGCAACACAATTTTGCTTCCCACGGCAGAGCATAATATCCAACATCAACAGCCACAGC
AACTGCAAACACAGAGCCAGGCCTCATGCCCACCTCAACCAAGCAAGCCCAGCCACTGCAGCGTTGCATCATATGCTGTT
CAGGGTAGTGGCCGAGCCTACACTGCCACATATAAGAATCCTGCCGAGAGTCCTGCAACTGTTGTTGCTGTTCTGCCCCA
GCATTCGGCAACAGCTCCTATGGCGTTTCATCATTTGGGGCCACAAATCTTGCATAAGAATCCATATGGAAGTATGTTCG
AAACGGCCAGTGTAGTAGGGTATCCACATGATCTAGTTGGGAGTATGACGCTCCCAGTGGTGACTGCGGACTCCAGTAAC
ATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCCGCGAGACTGGCCTGCATAGTGCAGAATGGGCAGTTATTG
GGTACTTCATTGCTACCACAAAACTTATTTCCATGACTATAGCTGGAAGCTTGTCGGCTCTCACCCGGGTATTTCATCTG
GCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTC--TTTTTTCTGCTGAAGGGTCAATCTGAAATAAGA
ATGATAGATTAGTCTAGTGATGATGCTGGCGTATGTCCTCACTTTTAATGGACATATCTTGCTTGTAACCGACAGTTGGC
GATGAACCTGTGCCTTTGCGATATGAATATATGACGAGTTTACATCATCTTATCCGCTGTTTAAATATCGGTTTACCACA
GTTTATGTAGTCTTGTCATGCCATATATTTTTTTTATT----TGGGGTTTTGTAGCATGTAGAGTAGTAAAGAAGAAAAG
AACTGAGATATACTCCCTCTGTTCATAAATATGTCTTTTTTGAGATTTCAATAAGGACTACATATGGATGTATATAGACA
TATTTTAGAGCGTAGATTCACTCATTTAGCTCCGTATGCAGTCCGCATTGGAATCTCTAAAAAGACTTGTACTCCCTCTG
TCCGAAAATACTTGTCATCAAAATGGATAAGAAGGGATGTATCTATAACTAAAATTATTTCCGGACGGAGGGAGTATTTA
GGAACGGAGGGAGTATATGTATCT-GGCATCTCAAAATTAACTTATCAATAGCCCATAACTACTCCCTTGACCTAAAAGG
TCTTATATATTTTTTAAAACTCAAAAAGGTCTT---ATATTAGTTTACAGAGGGAGTATTTC-----GTAAACCATAATT
GCGTTTCAGATGTAGCAT-TTC--TTTTTAACACC-TCAGAATAAGCAGTATGTGTGCGAACACTGCCACTGGAGAAAGC
AAATGTTGCTGTGATTTTGGAAAATAACGGCCGGAACTTCTCTCTTGTAGAAAAAACTGTAGAGTGCAAAAATGTCTCTC
TTGTAGAAAAAACTGTAGAGTGCAAAAATGTTGAAC-AACCACTACTTGCTAGTAACACTGTTCCAGCTACTGCTCCT--
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--TGGGCCAACAGAGCAAGATTTTATGT-----------CCGGGACAATAAGACTGGTCGTTCATAGCAAAGTTACGAGT
CTCAAAAAAAAAAAAGAAGAAGCAAAGTTGCTAGTTGCATATAGTGCGTGTGATTGGTAGGCAACTGCAGGCTATTCCAA
GTTTGTTCAGAAGTTTCTTTTGGCCTTATTGTCTTGAAAAGAGACTCCAGTCTTTTACATGACACTGATCAATTCGCTAT
GGCAGCGTAGATGCTA----------------------------------------------------------------
--------------------------------------------------------------------------TATAAA
AGTTTGAAGCCTTTATCACAACAACCAAATAC------------------------------------------------
------------------------------------------------------------TACTACCTGGAACAACTTTG
CGATCACGGTGCGG--CTCGGTAAAACTGCTGATTCA
>SNPs
----------------S---S-------------S------------S--SSSS----------------------S---
SS---S------------------S--------------------------S------------------S---------
--S-SSS-----SS--S---S----S-----------------------------------------S-SS--------S
------S-S--S-----------------------------------------S---S---------------------S
-S-S--SS-S---------------------SSS----------------S---S--S--SSSS--------S-----S-
--------------------------------------------------------------S-----------------
---------S-----S------------S----SS---S-SSS-SSS--SS-----------------------------
-----------------------SS-------------------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------
------------------------------------S-----------------S----------SS-------------
-------------------------------S------------------------------------------------
-----------------------------------------------------S--------------------------
----------------------SSSSSSS-----------------------------------------SSSSSSSSSS
--S--S----S---------------S-S-S-------------------------------------------------
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----------------------------------------------------S---------------------------
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---------------------S----------------------S-S-----------S---------------------
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---------------------S--------------------------S-------------------------------
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------------------------------------S-------------------------S-S-------------S-
--------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-----SS-S-S------
----------------------------------------------------S---------------------------
-------------------------------------------------S------------------------------
---S---------------------------------------------------------SSSSSSSSSSSS-------
--------------------------------------------------------------------------------
-S---S----------------S---------------------------------------------------------
-----------------------------------------S--------------------------------------
-----------------------------------------------------------S-------------S------
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---------------------S----------------------------------------------------------
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----------S-------------------------------S-------------------------------------
------------------S-------------------------S-----------------------------------
-----------------------------------------S------------------------------------S-
----------------------------------------------------S---------------------------
------------------------------------------------------------S---------------S---
------------S-------------------------------------------------------------------
--------------------------------------------S---------------------------------S-
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---------------S----------------------------------------------------S-----------
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--------------------------------------------S-----------------------------------
----------------------------S--S-SSS------------S----------------SS-------------
-----------------S-----------------S--S------------------------S---S------------
--S----S------------------------------SSSS--------------------------------------
---------------------S----------------------------------S-S-S-SSSSSS-SSS-SS--SS-
SSSS---SSS-SSSSSSSSSSSS-SSSSSSS-SSSSS-SSS--------SS-S-SS-SSSSSSSS-SSSSSSSS-S-SSS
SSSSSSSSSSSS-SS-SSSSS-SSSS--SSSSSS------SSSSSSSSS-SSSSSSSSSSSSSS--SSS--S-SSS-SS-
SSSS-SSSSS--S-SSSSSS-SS--SSSS-SS--SSSSSSSSSS---SSSSSSS-SSSSSS--SSS-S------------
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---------------------------------------------------------------------------S----
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-----------------------------------------------------------------S--S-----------
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S-----------------------------------------S-------------------------------------
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S------------------------------------
>forward_181
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-AATACCGATGACCAGCGACC-----------------------------------------------------------
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>reverse_2028
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---------------------------GGCTCTGTTAGTCGAGGCAC---------------------------------
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>forward_1033
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-----------------------------------------------------CCCTTCCTTCGCTTCGGATT-------
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>reverse_3245
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--------------------------------------------TGAGAGCCCTGCAACTGTTG----------------
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>forward_1036
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--------------------------------------------------------TTCCTTCGCTTCGGATTCCC----
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>reverse_3359
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------------------------------------------------------------------------------TG
AAACGACCAGTGTAGTAGGG------------------------------------------------------------
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>forward_3163
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-----------------------TCATGCCCACCTCAACCAAA-------------------------------------
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>reverse_4740
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-------------------ATCCGGGTTGCCATGCTTAA-----------------------------------------
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-------------------------------------
