Multiple sequence alignment - TraesCS3B01G295600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G295600 chr3B 100.000 2936 0 0 1 2936 474017999 474020934 0.000000e+00 5422
1 TraesCS3B01G295600 chr3B 97.410 888 17 3 1000 1881 473703392 473702505 0.000000e+00 1507
2 TraesCS3B01G295600 chr3A 88.223 1885 127 31 554 2382 485001391 485003236 0.000000e+00 2163
3 TraesCS3B01G295600 chr3A 88.817 1386 93 15 554 1892 484641751 484640381 0.000000e+00 1644
4 TraesCS3B01G295600 chr3A 91.985 262 16 3 2567 2824 485003433 485003693 2.150000e-96 363
5 TraesCS3B01G295600 chr3A 84.946 279 36 3 1024 1299 484644367 484644092 8.010000e-71 278
6 TraesCS3B01G295600 chr3A 75.844 385 40 20 114 498 484642534 484642203 2.360000e-31 147
7 TraesCS3B01G295600 chr3A 78.626 262 27 11 237 498 485000689 485000921 2.360000e-31 147
8 TraesCS3B01G295600 chr3D 90.329 1065 88 10 855 1907 363859649 363860710 0.000000e+00 1382
9 TraesCS3B01G295600 chr3D 89.529 764 64 6 997 1746 363858169 363858930 0.000000e+00 953
10 TraesCS3B01G295600 chr3D 89.740 653 39 14 1946 2582 363860772 363861412 0.000000e+00 809
11 TraesCS3B01G295600 chr3D 81.337 718 51 28 145 842 363858930 363859584 9.390000e-140 507
12 TraesCS3B01G295600 chr3D 77.318 604 114 14 1024 1618 363601984 363601395 4.690000e-88 335
13 TraesCS3B01G295600 chr3D 89.020 255 20 6 2567 2814 363861439 363861692 2.840000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G295600 chr3B 474017999 474020934 2935 False 5422.000000 5422 100.000000 1 2936 1 chr3B.!!$F1 2935
1 TraesCS3B01G295600 chr3B 473702505 473703392 887 True 1507.000000 1507 97.410000 1000 1881 1 chr3B.!!$R1 881
2 TraesCS3B01G295600 chr3A 485000689 485003693 3004 False 891.000000 2163 86.278000 237 2824 3 chr3A.!!$F1 2587
3 TraesCS3B01G295600 chr3A 484640381 484644367 3986 True 689.666667 1644 83.202333 114 1892 3 chr3A.!!$R1 1778
4 TraesCS3B01G295600 chr3D 363858169 363861692 3523 False 792.000000 1382 87.991000 145 2814 5 chr3D.!!$F1 2669
5 TraesCS3B01G295600 chr3D 363601395 363601984 589 True 335.000000 335 77.318000 1024 1618 1 chr3D.!!$R1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 2215 0.026803 CCTACTTTGCATCGAAGCGC 59.973 55.0 8.26 0.0 37.31 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 4757 0.593518 CGTGGAAAACATGCGCACAA 60.594 50.0 14.9 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.867305 TTCATCTAGAGTAGACAAGAACGAT 57.133 36.000 0.00 0.00 37.69 3.73
25 26 7.252965 TCATCTAGAGTAGACAAGAACGATG 57.747 40.000 0.00 0.00 37.69 3.84
27 28 6.912203 TCTAGAGTAGACAAGAACGATGAG 57.088 41.667 0.00 0.00 0.00 2.90
28 29 6.408035 TCTAGAGTAGACAAGAACGATGAGT 58.592 40.000 0.00 0.00 0.00 3.41
30 31 8.039538 TCTAGAGTAGACAAGAACGATGAGTAA 58.960 37.037 0.00 0.00 0.00 2.24
31 32 7.633193 AGAGTAGACAAGAACGATGAGTAAT 57.367 36.000 0.00 0.00 0.00 1.89
32 33 8.057536 AGAGTAGACAAGAACGATGAGTAATT 57.942 34.615 0.00 0.00 0.00 1.40
33 34 8.524487 AGAGTAGACAAGAACGATGAGTAATTT 58.476 33.333 0.00 0.00 0.00 1.82
34 35 8.467402 AGTAGACAAGAACGATGAGTAATTTG 57.533 34.615 0.00 0.00 0.00 2.32
35 36 8.304596 AGTAGACAAGAACGATGAGTAATTTGA 58.695 33.333 0.00 0.00 0.00 2.69
36 37 7.352719 AGACAAGAACGATGAGTAATTTGAC 57.647 36.000 0.00 0.00 0.00 3.18
37 38 6.929049 AGACAAGAACGATGAGTAATTTGACA 59.071 34.615 0.00 0.00 0.00 3.58
38 39 6.888430 ACAAGAACGATGAGTAATTTGACAC 58.112 36.000 0.00 0.00 0.00 3.67
39 40 6.481976 ACAAGAACGATGAGTAATTTGACACA 59.518 34.615 0.00 0.00 0.00 3.72
40 41 7.173218 ACAAGAACGATGAGTAATTTGACACAT 59.827 33.333 0.00 0.00 33.93 3.21
41 42 7.065216 AGAACGATGAGTAATTTGACACATG 57.935 36.000 0.00 0.00 31.76 3.21
42 43 5.221891 ACGATGAGTAATTTGACACATGC 57.778 39.130 0.00 0.00 31.76 4.06
44 45 4.591202 GATGAGTAATTTGACACATGCCG 58.409 43.478 0.00 0.00 31.76 5.69
46 47 3.818210 TGAGTAATTTGACACATGCCGTT 59.182 39.130 0.00 0.00 0.00 4.44
48 49 5.195001 AGTAATTTGACACATGCCGTTTT 57.805 34.783 0.00 0.00 0.00 2.43
49 50 5.596845 AGTAATTTGACACATGCCGTTTTT 58.403 33.333 0.00 0.00 0.00 1.94
50 51 4.792528 AATTTGACACATGCCGTTTTTG 57.207 36.364 0.00 0.00 0.00 2.44
51 52 2.949451 TTGACACATGCCGTTTTTGT 57.051 40.000 0.00 0.00 0.00 2.83
52 53 2.200792 TGACACATGCCGTTTTTGTG 57.799 45.000 0.00 1.02 44.85 3.33
53 54 0.852136 GACACATGCCGTTTTTGTGC 59.148 50.000 0.00 0.00 43.51 4.57
54 55 0.459489 ACACATGCCGTTTTTGTGCT 59.541 45.000 0.00 0.00 43.51 4.40
55 56 1.134848 ACACATGCCGTTTTTGTGCTT 60.135 42.857 0.00 0.00 43.51 3.91
57 58 3.119291 CACATGCCGTTTTTGTGCTTTA 58.881 40.909 0.00 0.00 34.89 1.85
58 59 3.740321 CACATGCCGTTTTTGTGCTTTAT 59.260 39.130 0.00 0.00 34.89 1.40
59 60 4.210955 CACATGCCGTTTTTGTGCTTTATT 59.789 37.500 0.00 0.00 34.89 1.40
60 61 5.403766 CACATGCCGTTTTTGTGCTTTATTA 59.596 36.000 0.00 0.00 34.89 0.98
61 62 6.090628 CACATGCCGTTTTTGTGCTTTATTAT 59.909 34.615 0.00 0.00 34.89 1.28
62 63 6.310224 ACATGCCGTTTTTGTGCTTTATTATC 59.690 34.615 0.00 0.00 0.00 1.75
65 66 5.288472 GCCGTTTTTGTGCTTTATTATCTGG 59.712 40.000 0.00 0.00 0.00 3.86
66 67 6.616947 CCGTTTTTGTGCTTTATTATCTGGA 58.383 36.000 0.00 0.00 0.00 3.86
69 70 6.832520 TTTTGTGCTTTATTATCTGGAGCA 57.167 33.333 0.00 0.00 40.70 4.26
70 71 6.441093 TTTGTGCTTTATTATCTGGAGCAG 57.559 37.500 0.00 0.00 43.27 4.24
71 72 5.102953 TGTGCTTTATTATCTGGAGCAGT 57.897 39.130 0.00 0.00 43.27 4.40
72 73 4.877823 TGTGCTTTATTATCTGGAGCAGTG 59.122 41.667 0.00 0.00 43.27 3.66
73 74 4.274459 GTGCTTTATTATCTGGAGCAGTGG 59.726 45.833 0.00 0.00 43.27 4.00
74 75 3.251972 GCTTTATTATCTGGAGCAGTGGC 59.748 47.826 0.00 0.00 41.61 5.01
84 85 4.606071 GCAGTGGCTTGTCGATCT 57.394 55.556 0.00 0.00 36.96 2.75
85 86 2.084844 GCAGTGGCTTGTCGATCTG 58.915 57.895 0.00 0.00 36.96 2.90
87 88 0.671472 CAGTGGCTTGTCGATCTGCA 60.671 55.000 8.33 0.00 0.00 4.41
88 89 0.035317 AGTGGCTTGTCGATCTGCAA 59.965 50.000 8.33 0.00 0.00 4.08
89 90 0.166814 GTGGCTTGTCGATCTGCAAC 59.833 55.000 8.33 4.14 0.00 4.17
91 92 0.723981 GGCTTGTCGATCTGCAACTC 59.276 55.000 8.33 0.00 0.00 3.01
92 93 0.368227 GCTTGTCGATCTGCAACTCG 59.632 55.000 10.48 10.48 36.25 4.18
94 95 2.061773 CTTGTCGATCTGCAACTCGTT 58.938 47.619 14.92 0.00 36.33 3.85
96 97 3.291809 TGTCGATCTGCAACTCGTTAA 57.708 42.857 14.92 2.82 36.33 2.01
99 100 5.404096 TGTCGATCTGCAACTCGTTAATAA 58.596 37.500 14.92 0.00 36.33 1.40
100 101 5.287752 TGTCGATCTGCAACTCGTTAATAAC 59.712 40.000 14.92 7.38 36.33 1.89
101 102 4.802039 TCGATCTGCAACTCGTTAATAACC 59.198 41.667 14.92 0.00 36.33 2.85
103 104 5.051641 CGATCTGCAACTCGTTAATAACCTC 60.052 44.000 8.92 0.00 0.00 3.85
105 106 4.222145 TCTGCAACTCGTTAATAACCTCCT 59.778 41.667 0.00 0.00 0.00 3.69
106 107 4.250464 TGCAACTCGTTAATAACCTCCTG 58.750 43.478 0.00 0.00 0.00 3.86
107 108 4.251268 GCAACTCGTTAATAACCTCCTGT 58.749 43.478 0.00 0.00 0.00 4.00
108 109 4.329256 GCAACTCGTTAATAACCTCCTGTC 59.671 45.833 0.00 0.00 0.00 3.51
109 110 4.732672 ACTCGTTAATAACCTCCTGTCC 57.267 45.455 0.00 0.00 0.00 4.02
110 111 4.351127 ACTCGTTAATAACCTCCTGTCCT 58.649 43.478 0.00 0.00 0.00 3.85
111 112 4.159879 ACTCGTTAATAACCTCCTGTCCTG 59.840 45.833 0.00 0.00 0.00 3.86
112 113 3.118884 TCGTTAATAACCTCCTGTCCTGC 60.119 47.826 0.00 0.00 0.00 4.85
113 114 3.542648 GTTAATAACCTCCTGTCCTGCC 58.457 50.000 0.00 0.00 0.00 4.85
114 115 0.919710 AATAACCTCCTGTCCTGCCC 59.080 55.000 0.00 0.00 0.00 5.36
115 116 0.988678 ATAACCTCCTGTCCTGCCCC 60.989 60.000 0.00 0.00 0.00 5.80
116 117 2.119847 TAACCTCCTGTCCTGCCCCT 62.120 60.000 0.00 0.00 0.00 4.79
118 119 2.040278 CTCCTGTCCTGCCCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
119 120 2.039624 TCCTGTCCTGCCCCTCTC 59.960 66.667 0.00 0.00 0.00 3.20
120 121 3.086600 CCTGTCCTGCCCCTCTCC 61.087 72.222 0.00 0.00 0.00 3.71
121 122 3.465403 CTGTCCTGCCCCTCTCCG 61.465 72.222 0.00 0.00 0.00 4.63
127 128 4.954118 TGCCCCTCTCCGGTGTGT 62.954 66.667 0.00 0.00 0.00 3.72
128 129 4.394712 GCCCCTCTCCGGTGTGTG 62.395 72.222 0.00 0.00 0.00 3.82
130 131 2.343758 CCCTCTCCGGTGTGTGTG 59.656 66.667 0.00 0.00 0.00 3.82
132 133 2.421314 CTCTCCGGTGTGTGTGCA 59.579 61.111 0.00 0.00 0.00 4.57
133 134 1.665916 CTCTCCGGTGTGTGTGCAG 60.666 63.158 0.00 0.00 0.00 4.41
134 135 2.666190 CTCCGGTGTGTGTGCAGG 60.666 66.667 0.00 0.00 0.00 4.85
196 1998 9.793252 CTGATTTAATCGGAAATTCATTTCAGT 57.207 29.630 7.98 0.00 46.03 3.41
209 2011 9.657419 AAATTCATTTCAGTTTCAGTTTCAGTT 57.343 25.926 0.00 0.00 0.00 3.16
258 2060 3.509137 AAACCAAGAGCGCGTCCGA 62.509 57.895 8.43 0.00 36.29 4.55
261 2063 4.717629 CAAGAGCGCGTCCGACCA 62.718 66.667 8.43 0.00 36.29 4.02
301 2103 4.176752 GGGGTAGGGCAGAAGCGG 62.177 72.222 0.00 0.00 43.41 5.52
312 2114 5.246307 AGGGCAGAAGCGGTAATAATATTC 58.754 41.667 0.00 0.00 43.41 1.75
314 2116 4.689345 GGCAGAAGCGGTAATAATATTCGT 59.311 41.667 0.00 0.00 43.41 3.85
372 2174 1.149627 CGACCTTTTCCACACCCCA 59.850 57.895 0.00 0.00 0.00 4.96
388 2206 1.272425 CCCCATGTTCCCTACTTTGCA 60.272 52.381 0.00 0.00 0.00 4.08
389 2207 2.624029 CCCCATGTTCCCTACTTTGCAT 60.624 50.000 0.00 0.00 0.00 3.96
390 2208 2.689983 CCCATGTTCCCTACTTTGCATC 59.310 50.000 0.00 0.00 0.00 3.91
391 2209 2.355756 CCATGTTCCCTACTTTGCATCG 59.644 50.000 0.00 0.00 0.00 3.84
392 2210 3.270027 CATGTTCCCTACTTTGCATCGA 58.730 45.455 0.00 0.00 0.00 3.59
393 2211 3.410631 TGTTCCCTACTTTGCATCGAA 57.589 42.857 0.00 0.00 0.00 3.71
394 2212 3.334691 TGTTCCCTACTTTGCATCGAAG 58.665 45.455 0.00 0.00 0.00 3.79
395 2213 2.024176 TCCCTACTTTGCATCGAAGC 57.976 50.000 5.52 5.52 0.00 3.86
396 2214 0.652592 CCCTACTTTGCATCGAAGCG 59.347 55.000 8.26 0.00 37.31 4.68
397 2215 0.026803 CCTACTTTGCATCGAAGCGC 59.973 55.000 8.26 0.00 37.31 5.92
398 2216 0.314578 CTACTTTGCATCGAAGCGCG 60.315 55.000 8.26 0.00 42.69 6.86
399 2217 2.291508 TACTTTGCATCGAAGCGCGC 62.292 55.000 26.66 26.66 40.61 6.86
400 2218 4.459331 TTTGCATCGAAGCGCGCC 62.459 61.111 30.33 13.03 40.61 6.53
417 2235 1.915266 CCAGCTCCTGACTGTGGGA 60.915 63.158 0.00 0.00 32.44 4.37
418 2236 1.294780 CAGCTCCTGACTGTGGGAC 59.705 63.158 0.00 0.00 32.44 4.46
419 2237 1.157276 AGCTCCTGACTGTGGGACT 59.843 57.895 0.00 0.00 0.00 3.85
420 2238 0.902516 AGCTCCTGACTGTGGGACTC 60.903 60.000 0.00 0.00 0.00 3.36
467 2285 1.579932 TCGCGTTCGAGAAGCTCTT 59.420 52.632 5.77 0.00 40.21 2.85
468 2286 0.454620 TCGCGTTCGAGAAGCTCTTC 60.455 55.000 5.77 1.52 40.21 2.87
488 2316 5.248020 TCTTCTGGAGCTTTTCTTCTCTGAT 59.752 40.000 0.00 0.00 0.00 2.90
501 2329 0.749454 CTCTGATTTTCCGGGGCTGG 60.749 60.000 0.00 0.00 0.00 4.85
507 2335 2.299727 TTTTCCGGGGCTGGACCAAA 62.300 55.000 0.00 0.00 42.05 3.28
508 2336 2.987355 TTTCCGGGGCTGGACCAAAC 62.987 60.000 0.00 0.00 42.05 2.93
521 2698 0.739813 ACCAAACGCGTATCCTCAGC 60.740 55.000 14.46 0.00 0.00 4.26
530 2707 2.028130 CGTATCCTCAGCAGGTCTTCT 58.972 52.381 0.00 0.00 41.28 2.85
541 2718 4.219507 CAGCAGGTCTTCTGAAGAGAGTTA 59.780 45.833 19.85 0.00 46.18 2.24
547 2724 4.022155 GTCTTCTGAAGAGAGTTAACGGGT 60.022 45.833 19.85 0.00 38.41 5.28
553 2730 4.461781 TGAAGAGAGTTAACGGGTTCCTAG 59.538 45.833 0.00 0.00 0.00 3.02
568 2810 5.412640 GGTTCCTAGTTCTTTCTGTAGCTC 58.587 45.833 0.00 0.00 0.00 4.09
574 2816 2.217510 TCTTTCTGTAGCTCGGAGGT 57.782 50.000 14.80 14.80 32.56 3.85
643 2885 8.067784 CAGAGACTATTAAGAGAAGTTAGCGAG 58.932 40.741 3.65 0.00 0.00 5.03
644 2886 6.731164 AGACTATTAAGAGAAGTTAGCGAGC 58.269 40.000 3.65 0.00 0.00 5.03
645 2887 5.512473 ACTATTAAGAGAAGTTAGCGAGCG 58.488 41.667 3.65 0.00 0.00 5.03
646 2888 4.634184 ATTAAGAGAAGTTAGCGAGCGA 57.366 40.909 0.00 0.00 0.00 4.93
667 2911 4.629634 CGATTCCCAAATTAAAAACCTGCC 59.370 41.667 0.00 0.00 0.00 4.85
672 2916 3.063485 CAAATTAAAAACCTGCCGTGGG 58.937 45.455 0.00 0.00 0.00 4.61
686 2930 2.225727 GCCGTGGGAGACAAAAGTAAAG 59.774 50.000 0.00 0.00 0.00 1.85
687 2931 3.473625 CCGTGGGAGACAAAAGTAAAGT 58.526 45.455 0.00 0.00 0.00 2.66
688 2932 4.634199 CCGTGGGAGACAAAAGTAAAGTA 58.366 43.478 0.00 0.00 0.00 2.24
689 2933 4.689345 CCGTGGGAGACAAAAGTAAAGTAG 59.311 45.833 0.00 0.00 0.00 2.57
690 2934 5.510179 CCGTGGGAGACAAAAGTAAAGTAGA 60.510 44.000 0.00 0.00 0.00 2.59
736 2980 1.667830 CTTTCTTCCACGCGGCTGA 60.668 57.895 12.47 0.00 0.00 4.26
757 3010 6.308015 TGAGCCAATAAAGTATACCACACT 57.692 37.500 0.00 0.00 0.00 3.55
884 3194 0.606673 GGAGAAACTCGCAAGGCCTT 60.607 55.000 13.78 13.78 38.47 4.35
886 3196 0.108585 AGAAACTCGCAAGGCCTTCA 59.891 50.000 17.29 1.08 38.47 3.02
900 3210 2.681344 GGCCTTCACCACTTATAAACGG 59.319 50.000 0.00 0.00 0.00 4.44
903 3213 4.189231 CCTTCACCACTTATAAACGGAGG 58.811 47.826 6.80 0.91 0.00 4.30
904 3214 3.255969 TCACCACTTATAAACGGAGGC 57.744 47.619 6.80 0.00 0.00 4.70
906 3216 1.134610 ACCACTTATAAACGGAGGCGG 60.135 52.381 6.80 0.00 0.00 6.13
927 3240 0.028770 CAGCGCCAAGAAACAAACGA 59.971 50.000 2.29 0.00 0.00 3.85
931 3244 0.741915 GCCAAGAAACAAACGACCCA 59.258 50.000 0.00 0.00 0.00 4.51
937 3250 1.336755 GAAACAAACGACCCAGTGCAT 59.663 47.619 0.00 0.00 0.00 3.96
949 3266 1.039068 CAGTGCATCCACCAAACCAA 58.961 50.000 0.00 0.00 43.09 3.67
950 3267 1.000060 CAGTGCATCCACCAAACCAAG 60.000 52.381 0.00 0.00 43.09 3.61
954 3271 0.114168 CATCCACCAAACCAAGGGGA 59.886 55.000 0.00 0.00 38.05 4.81
955 3273 0.409484 ATCCACCAAACCAAGGGGAG 59.591 55.000 0.00 0.00 38.05 4.30
957 3275 1.228862 CACCAAACCAAGGGGAGGG 60.229 63.158 0.00 0.00 38.05 4.30
964 3282 1.241485 ACCAAGGGGAGGGAAAAAGT 58.759 50.000 0.00 0.00 38.05 2.66
1587 3918 2.124320 AACTGGGTGCAAGCGTGT 60.124 55.556 0.59 0.00 33.03 4.49
1903 4234 2.096218 CAGAAGTTGCGTGTTTCTAGCC 60.096 50.000 0.00 0.00 30.43 3.93
1904 4235 2.143925 GAAGTTGCGTGTTTCTAGCCT 58.856 47.619 0.00 0.00 0.00 4.58
1905 4236 1.512926 AGTTGCGTGTTTCTAGCCTG 58.487 50.000 0.00 0.00 0.00 4.85
1906 4237 0.110192 GTTGCGTGTTTCTAGCCTGC 60.110 55.000 0.00 0.00 0.00 4.85
1907 4238 1.234615 TTGCGTGTTTCTAGCCTGCC 61.235 55.000 0.00 0.00 0.00 4.85
1908 4239 2.399356 GCGTGTTTCTAGCCTGCCC 61.399 63.158 0.00 0.00 0.00 5.36
1909 4240 1.296715 CGTGTTTCTAGCCTGCCCT 59.703 57.895 0.00 0.00 0.00 5.19
1910 4241 1.021390 CGTGTTTCTAGCCTGCCCTG 61.021 60.000 0.00 0.00 0.00 4.45
1911 4242 1.002134 TGTTTCTAGCCTGCCCTGC 60.002 57.895 0.00 0.00 0.00 4.85
1912 4243 1.750780 GTTTCTAGCCTGCCCTGCC 60.751 63.158 0.00 0.00 0.00 4.85
1925 4256 2.747855 CTGCCCTGCCTCGGTTTC 60.748 66.667 0.00 0.00 0.00 2.78
1926 4257 3.551496 CTGCCCTGCCTCGGTTTCA 62.551 63.158 0.00 0.00 0.00 2.69
1927 4258 2.282180 GCCCTGCCTCGGTTTCAA 60.282 61.111 0.00 0.00 0.00 2.69
1929 4260 1.460273 GCCCTGCCTCGGTTTCAAAA 61.460 55.000 0.00 0.00 0.00 2.44
1930 4261 1.036707 CCCTGCCTCGGTTTCAAAAA 58.963 50.000 0.00 0.00 0.00 1.94
1962 4315 5.723492 AACGTATCCTTAATTTACACCGC 57.277 39.130 0.00 0.00 0.00 5.68
2002 4355 2.358898 ACACACATGCTTTCTCACCAAC 59.641 45.455 0.00 0.00 0.00 3.77
2020 4373 0.681564 ACTAGAGGGTCGAGTGCAGG 60.682 60.000 0.00 0.00 31.09 4.85
2085 4439 6.599638 ACCACATAAATCTAAGCCTTCAGTTC 59.400 38.462 0.00 0.00 0.00 3.01
2124 4481 1.376553 GTGAGAGAGCCTGCAACCC 60.377 63.158 0.00 0.00 0.00 4.11
2169 4529 3.880490 CCTGCAACTTACACCAACTTGTA 59.120 43.478 0.00 0.00 0.00 2.41
2170 4530 4.261031 CCTGCAACTTACACCAACTTGTAC 60.261 45.833 0.00 0.00 31.53 2.90
2171 4531 4.519213 TGCAACTTACACCAACTTGTACT 58.481 39.130 0.00 0.00 31.53 2.73
2172 4532 4.334203 TGCAACTTACACCAACTTGTACTG 59.666 41.667 0.00 0.00 31.53 2.74
2174 4534 5.163693 GCAACTTACACCAACTTGTACTGTT 60.164 40.000 0.00 0.00 33.05 3.16
2175 4535 6.255215 CAACTTACACCAACTTGTACTGTTG 58.745 40.000 18.71 18.71 42.96 3.33
2176 4536 4.334481 ACTTACACCAACTTGTACTGTTGC 59.666 41.667 19.65 0.00 42.25 4.17
2178 4538 3.287222 ACACCAACTTGTACTGTTGCAT 58.713 40.909 19.65 11.39 42.25 3.96
2179 4539 4.456535 ACACCAACTTGTACTGTTGCATA 58.543 39.130 19.65 0.00 42.25 3.14
2180 4540 5.070001 ACACCAACTTGTACTGTTGCATAT 58.930 37.500 19.65 7.98 42.25 1.78
2181 4541 6.234920 ACACCAACTTGTACTGTTGCATATA 58.765 36.000 19.65 0.00 42.25 0.86
2183 4543 6.371548 CACCAACTTGTACTGTTGCATATACT 59.628 38.462 19.65 1.87 42.25 2.12
2186 4546 7.979537 CCAACTTGTACTGTTGCATATACTAGA 59.020 37.037 19.65 0.00 42.25 2.43
2187 4547 9.534565 CAACTTGTACTGTTGCATATACTAGAT 57.465 33.333 15.47 0.00 38.36 1.98
2188 4548 9.534565 AACTTGTACTGTTGCATATACTAGATG 57.465 33.333 0.00 0.00 0.00 2.90
2189 4549 8.696374 ACTTGTACTGTTGCATATACTAGATGT 58.304 33.333 0.00 0.00 0.00 3.06
2190 4550 9.534565 CTTGTACTGTTGCATATACTAGATGTT 57.465 33.333 0.00 0.00 0.00 2.71
2191 4551 8.871686 TGTACTGTTGCATATACTAGATGTTG 57.128 34.615 0.00 0.00 0.00 3.33
2192 4552 8.691797 TGTACTGTTGCATATACTAGATGTTGA 58.308 33.333 0.00 0.00 0.00 3.18
2193 4553 9.186323 GTACTGTTGCATATACTAGATGTTGAG 57.814 37.037 0.00 0.00 0.00 3.02
2194 4554 7.786030 ACTGTTGCATATACTAGATGTTGAGT 58.214 34.615 0.00 0.00 0.00 3.41
2195 4555 8.260818 ACTGTTGCATATACTAGATGTTGAGTT 58.739 33.333 0.00 0.00 0.00 3.01
2219 4579 4.533919 TTTTTCCTGTGGCATGGTAATG 57.466 40.909 8.90 0.00 36.82 1.90
2224 4584 1.401552 CTGTGGCATGGTAATGGTTCG 59.598 52.381 0.00 0.00 34.09 3.95
2233 4593 5.475564 GCATGGTAATGGTTCGGGTTAATAT 59.524 40.000 0.00 0.00 34.09 1.28
2241 4601 8.754991 AATGGTTCGGGTTAATATTACATGAA 57.245 30.769 0.00 0.00 0.00 2.57
2270 4630 3.132289 CCCAGCCAATTCTAACTCGTAGA 59.868 47.826 0.00 0.00 37.04 2.59
2287 4647 1.218316 GACGAGACCAATTCCCGCT 59.782 57.895 0.00 0.00 0.00 5.52
2330 4695 7.402811 CTTCATGTGAAGTAAACACGTTCTA 57.597 36.000 13.32 0.00 44.80 2.10
2383 4748 8.948631 ACACATTTCTATTACTCGAATGACAT 57.051 30.769 0.00 0.00 0.00 3.06
2384 4749 8.820933 ACACATTTCTATTACTCGAATGACATG 58.179 33.333 0.00 0.00 0.00 3.21
2391 4756 9.734984 TCTATTACTCGAATGACATGTATAGGA 57.265 33.333 0.00 0.00 0.00 2.94
2394 4759 9.645059 ATTACTCGAATGACATGTATAGGATTG 57.355 33.333 0.00 0.00 0.00 2.67
2395 4760 7.055667 ACTCGAATGACATGTATAGGATTGT 57.944 36.000 0.00 0.00 0.00 2.71
2396 4761 6.925718 ACTCGAATGACATGTATAGGATTGTG 59.074 38.462 0.00 0.00 0.00 3.33
2397 4762 5.696270 TCGAATGACATGTATAGGATTGTGC 59.304 40.000 0.00 0.00 0.00 4.57
2398 4763 5.388786 CGAATGACATGTATAGGATTGTGCG 60.389 44.000 0.00 0.00 0.00 5.34
2399 4764 3.130633 TGACATGTATAGGATTGTGCGC 58.869 45.455 0.00 0.00 0.00 6.09
2400 4765 3.130633 GACATGTATAGGATTGTGCGCA 58.869 45.455 5.66 5.66 0.00 6.09
2401 4766 3.743521 ACATGTATAGGATTGTGCGCAT 58.256 40.909 15.91 0.00 0.00 4.73
2402 4767 3.499537 ACATGTATAGGATTGTGCGCATG 59.500 43.478 15.91 5.15 38.57 4.06
2403 4768 3.192541 TGTATAGGATTGTGCGCATGT 57.807 42.857 15.91 1.82 0.00 3.21
2404 4769 3.540617 TGTATAGGATTGTGCGCATGTT 58.459 40.909 15.91 0.00 0.00 2.71
2405 4770 3.944650 TGTATAGGATTGTGCGCATGTTT 59.055 39.130 15.91 0.00 0.00 2.83
2406 4771 4.397730 TGTATAGGATTGTGCGCATGTTTT 59.602 37.500 15.91 0.47 0.00 2.43
2407 4772 2.352503 AGGATTGTGCGCATGTTTTC 57.647 45.000 15.91 6.80 0.00 2.29
2408 4773 1.067635 AGGATTGTGCGCATGTTTTCC 60.068 47.619 15.91 15.75 0.00 3.13
2409 4774 1.336702 GGATTGTGCGCATGTTTTCCA 60.337 47.619 15.91 0.85 0.00 3.53
2410 4775 1.720852 GATTGTGCGCATGTTTTCCAC 59.279 47.619 15.91 0.00 0.00 4.02
2411 4776 0.593518 TTGTGCGCATGTTTTCCACG 60.594 50.000 15.91 0.00 0.00 4.94
2412 4777 1.729131 GTGCGCATGTTTTCCACGG 60.729 57.895 15.91 0.00 0.00 4.94
2413 4778 2.126502 GCGCATGTTTTCCACGGG 60.127 61.111 0.30 0.00 0.00 5.28
2414 4779 2.914908 GCGCATGTTTTCCACGGGT 61.915 57.895 0.30 0.00 0.00 5.28
2415 4780 1.081509 CGCATGTTTTCCACGGGTG 60.082 57.895 0.00 0.00 0.00 4.61
2416 4781 1.791103 CGCATGTTTTCCACGGGTGT 61.791 55.000 0.00 0.00 0.00 4.16
2417 4782 0.387565 GCATGTTTTCCACGGGTGTT 59.612 50.000 0.00 0.00 0.00 3.32
2418 4783 1.867698 GCATGTTTTCCACGGGTGTTG 60.868 52.381 0.00 0.00 0.00 3.33
2419 4784 1.407258 CATGTTTTCCACGGGTGTTGT 59.593 47.619 0.00 0.00 0.00 3.32
2420 4785 1.096416 TGTTTTCCACGGGTGTTGTC 58.904 50.000 0.00 0.00 0.00 3.18
2437 4834 2.980568 TGTCGGAAAATTAGACGCCAT 58.019 42.857 0.00 0.00 37.69 4.40
2458 4855 1.330521 CTTAACCATTCCGCGGACATG 59.669 52.381 31.19 29.43 0.00 3.21
2471 4869 2.922335 GCGGACATGCCTTTGTTTTCTC 60.922 50.000 0.00 0.00 0.00 2.87
2482 4880 5.354234 GCCTTTGTTTTCTCTTCGGATATGA 59.646 40.000 0.00 0.00 0.00 2.15
2551 4952 1.504359 TTTTGCGACCGAGTAGTTGG 58.496 50.000 1.85 1.85 0.00 3.77
2653 5095 4.445453 GTGATGATACATCTGGTTGCAGA 58.555 43.478 11.98 0.00 35.46 4.26
2726 5171 4.027437 GAGGTATGAGGAGAAAGTGAGGT 58.973 47.826 0.00 0.00 0.00 3.85
2746 5191 2.026262 GTGGGCTTCAATGAGGAGGTTA 60.026 50.000 0.00 0.00 0.00 2.85
2755 5200 4.597507 TCAATGAGGAGGTTAAACAGGAGT 59.402 41.667 0.00 0.00 0.00 3.85
2772 5217 2.128507 GTAGGGGCTCCTCGGTGAG 61.129 68.421 9.55 0.00 43.66 3.51
2808 5256 0.249911 GAAGGAGTTGCGACCAGTGT 60.250 55.000 0.00 0.00 0.00 3.55
2824 5273 1.484240 AGTGTAGAGCTTCATGAGGGC 59.516 52.381 6.99 10.37 0.00 5.19
2825 5274 0.833287 TGTAGAGCTTCATGAGGGCC 59.167 55.000 15.87 0.00 0.00 5.80
2826 5275 0.833287 GTAGAGCTTCATGAGGGCCA 59.167 55.000 6.18 0.00 0.00 5.36
2827 5276 1.419387 GTAGAGCTTCATGAGGGCCAT 59.581 52.381 6.18 0.00 35.44 4.40
2828 5277 1.811778 AGAGCTTCATGAGGGCCATA 58.188 50.000 6.18 0.00 33.31 2.74
2829 5278 1.419387 AGAGCTTCATGAGGGCCATAC 59.581 52.381 6.18 0.00 33.31 2.39
2830 5279 1.141657 GAGCTTCATGAGGGCCATACA 59.858 52.381 6.18 3.08 33.31 2.29
2831 5280 1.565759 AGCTTCATGAGGGCCATACAA 59.434 47.619 6.18 0.00 33.31 2.41
2832 5281 1.952296 GCTTCATGAGGGCCATACAAG 59.048 52.381 6.18 1.98 33.31 3.16
2833 5282 2.579873 CTTCATGAGGGCCATACAAGG 58.420 52.381 6.18 0.62 33.31 3.61
2853 5302 2.534272 CCCCCTCCCACCCAAGAA 60.534 66.667 0.00 0.00 0.00 2.52
2854 5303 2.167037 CCCCCTCCCACCCAAGAAA 61.167 63.158 0.00 0.00 0.00 2.52
2855 5304 1.518431 CCCCCTCCCACCCAAGAAAT 61.518 60.000 0.00 0.00 0.00 2.17
2856 5305 0.324645 CCCCTCCCACCCAAGAAATG 60.325 60.000 0.00 0.00 0.00 2.32
2865 5314 1.598517 CCAAGAAATGGGCCCAAGC 59.401 57.895 32.58 20.86 46.27 4.01
2866 5315 0.906282 CCAAGAAATGGGCCCAAGCT 60.906 55.000 32.58 22.89 46.27 3.74
2867 5316 0.533951 CAAGAAATGGGCCCAAGCTC 59.466 55.000 32.58 24.23 41.29 4.09
2868 5317 0.615827 AAGAAATGGGCCCAAGCTCC 60.616 55.000 32.58 16.27 39.53 4.70
2869 5318 2.362889 AAATGGGCCCAAGCTCCG 60.363 61.111 32.58 0.00 39.53 4.63
2875 5324 2.046314 GCCCAAGCTCCGCAACTA 60.046 61.111 0.00 0.00 35.50 2.24
2876 5325 2.109126 GCCCAAGCTCCGCAACTAG 61.109 63.158 0.00 0.00 35.50 2.57
2877 5326 1.450312 CCCAAGCTCCGCAACTAGG 60.450 63.158 0.00 0.00 0.00 3.02
2878 5327 1.296715 CCAAGCTCCGCAACTAGGT 59.703 57.895 0.00 0.00 0.00 3.08
2879 5328 0.535335 CCAAGCTCCGCAACTAGGTA 59.465 55.000 0.00 0.00 0.00 3.08
2880 5329 1.139058 CCAAGCTCCGCAACTAGGTAT 59.861 52.381 0.00 0.00 0.00 2.73
2881 5330 2.205074 CAAGCTCCGCAACTAGGTATG 58.795 52.381 0.00 0.00 0.00 2.39
2882 5331 1.776662 AGCTCCGCAACTAGGTATGA 58.223 50.000 0.00 0.00 0.00 2.15
2883 5332 1.409427 AGCTCCGCAACTAGGTATGAC 59.591 52.381 0.00 0.00 0.00 3.06
2884 5333 1.136305 GCTCCGCAACTAGGTATGACA 59.864 52.381 0.00 0.00 0.00 3.58
2885 5334 2.224066 GCTCCGCAACTAGGTATGACAT 60.224 50.000 0.00 0.00 0.00 3.06
2886 5335 3.384668 CTCCGCAACTAGGTATGACATG 58.615 50.000 0.00 0.00 0.00 3.21
2887 5336 2.764010 TCCGCAACTAGGTATGACATGT 59.236 45.455 0.00 0.00 0.00 3.21
2888 5337 3.196901 TCCGCAACTAGGTATGACATGTT 59.803 43.478 0.00 0.00 0.00 2.71
2889 5338 3.309682 CCGCAACTAGGTATGACATGTTG 59.690 47.826 0.00 9.94 38.13 3.33
2893 5342 5.872635 CAACTAGGTATGACATGTTGCTTG 58.127 41.667 0.00 0.00 0.00 4.01
2894 5343 4.517285 ACTAGGTATGACATGTTGCTTGG 58.483 43.478 0.00 0.00 0.00 3.61
2895 5344 3.439857 AGGTATGACATGTTGCTTGGT 57.560 42.857 0.00 0.00 0.00 3.67
2896 5345 3.084039 AGGTATGACATGTTGCTTGGTG 58.916 45.455 0.00 0.00 0.00 4.17
2897 5346 2.164219 GGTATGACATGTTGCTTGGTGG 59.836 50.000 0.00 0.00 0.00 4.61
2898 5347 1.259609 ATGACATGTTGCTTGGTGGG 58.740 50.000 0.00 0.00 0.00 4.61
2899 5348 0.184692 TGACATGTTGCTTGGTGGGA 59.815 50.000 0.00 0.00 0.00 4.37
2900 5349 1.327303 GACATGTTGCTTGGTGGGAA 58.673 50.000 0.00 0.00 0.00 3.97
2901 5350 1.270550 GACATGTTGCTTGGTGGGAAG 59.729 52.381 0.00 0.00 0.00 3.46
2902 5351 1.331214 CATGTTGCTTGGTGGGAAGT 58.669 50.000 0.00 0.00 0.00 3.01
2903 5352 1.270550 CATGTTGCTTGGTGGGAAGTC 59.729 52.381 0.00 0.00 0.00 3.01
2904 5353 0.817634 TGTTGCTTGGTGGGAAGTCG 60.818 55.000 0.00 0.00 0.00 4.18
2905 5354 0.818040 GTTGCTTGGTGGGAAGTCGT 60.818 55.000 0.00 0.00 0.00 4.34
2906 5355 0.106918 TTGCTTGGTGGGAAGTCGTT 60.107 50.000 0.00 0.00 0.00 3.85
2907 5356 0.534203 TGCTTGGTGGGAAGTCGTTC 60.534 55.000 0.00 0.00 0.00 3.95
2919 5368 4.813296 GAAGTCGTTCCTTTCAATGTGT 57.187 40.909 0.00 0.00 0.00 3.72
2920 5369 5.917541 GAAGTCGTTCCTTTCAATGTGTA 57.082 39.130 0.00 0.00 0.00 2.90
2921 5370 5.668558 AAGTCGTTCCTTTCAATGTGTAC 57.331 39.130 0.00 0.00 0.00 2.90
2922 5371 4.062991 AGTCGTTCCTTTCAATGTGTACC 58.937 43.478 0.00 0.00 0.00 3.34
2923 5372 4.062991 GTCGTTCCTTTCAATGTGTACCT 58.937 43.478 0.00 0.00 0.00 3.08
2924 5373 4.514066 GTCGTTCCTTTCAATGTGTACCTT 59.486 41.667 0.00 0.00 0.00 3.50
2925 5374 5.697633 GTCGTTCCTTTCAATGTGTACCTTA 59.302 40.000 0.00 0.00 0.00 2.69
2926 5375 6.203338 GTCGTTCCTTTCAATGTGTACCTTAA 59.797 38.462 0.00 0.00 0.00 1.85
2927 5376 6.938030 TCGTTCCTTTCAATGTGTACCTTAAT 59.062 34.615 0.00 0.00 0.00 1.40
2928 5377 7.446013 TCGTTCCTTTCAATGTGTACCTTAATT 59.554 33.333 0.00 0.00 0.00 1.40
2929 5378 8.079809 CGTTCCTTTCAATGTGTACCTTAATTT 58.920 33.333 0.00 0.00 0.00 1.82
2930 5379 9.191995 GTTCCTTTCAATGTGTACCTTAATTTG 57.808 33.333 0.00 0.00 0.00 2.32
2931 5380 7.891561 TCCTTTCAATGTGTACCTTAATTTGG 58.108 34.615 0.00 0.00 0.00 3.28
2932 5381 6.589907 CCTTTCAATGTGTACCTTAATTTGGC 59.410 38.462 0.00 0.00 0.00 4.52
2933 5382 5.303747 TCAATGTGTACCTTAATTTGGCG 57.696 39.130 0.00 0.00 0.00 5.69
2934 5383 4.156922 TCAATGTGTACCTTAATTTGGCGG 59.843 41.667 0.00 0.00 0.00 6.13
2935 5384 1.813786 TGTGTACCTTAATTTGGCGGC 59.186 47.619 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.553044 TCATCGTTCTTGTCTACTCTAGATGAA 59.447 37.037 0.00 0.00 38.11 2.57
1 2 7.048512 TCATCGTTCTTGTCTACTCTAGATGA 58.951 38.462 0.00 0.00 38.54 2.92
3 4 7.051623 ACTCATCGTTCTTGTCTACTCTAGAT 58.948 38.462 0.00 0.00 37.13 1.98
4 5 6.408035 ACTCATCGTTCTTGTCTACTCTAGA 58.592 40.000 0.00 0.00 0.00 2.43
5 6 6.671614 ACTCATCGTTCTTGTCTACTCTAG 57.328 41.667 0.00 0.00 0.00 2.43
6 7 8.734218 ATTACTCATCGTTCTTGTCTACTCTA 57.266 34.615 0.00 0.00 0.00 2.43
7 8 7.633193 ATTACTCATCGTTCTTGTCTACTCT 57.367 36.000 0.00 0.00 0.00 3.24
8 9 8.587950 CAAATTACTCATCGTTCTTGTCTACTC 58.412 37.037 0.00 0.00 0.00 2.59
9 10 8.304596 TCAAATTACTCATCGTTCTTGTCTACT 58.695 33.333 0.00 0.00 0.00 2.57
10 11 8.373992 GTCAAATTACTCATCGTTCTTGTCTAC 58.626 37.037 0.00 0.00 0.00 2.59
12 13 6.929049 TGTCAAATTACTCATCGTTCTTGTCT 59.071 34.615 0.00 0.00 0.00 3.41
13 14 7.010023 GTGTCAAATTACTCATCGTTCTTGTC 58.990 38.462 0.00 0.00 0.00 3.18
14 15 6.481976 TGTGTCAAATTACTCATCGTTCTTGT 59.518 34.615 0.00 0.00 0.00 3.16
15 16 6.887368 TGTGTCAAATTACTCATCGTTCTTG 58.113 36.000 0.00 0.00 0.00 3.02
16 17 7.521529 CATGTGTCAAATTACTCATCGTTCTT 58.478 34.615 0.00 0.00 32.71 2.52
17 18 6.402550 GCATGTGTCAAATTACTCATCGTTCT 60.403 38.462 0.00 0.00 32.71 3.01
18 19 5.734498 GCATGTGTCAAATTACTCATCGTTC 59.266 40.000 0.00 0.00 32.71 3.95
20 21 4.094887 GGCATGTGTCAAATTACTCATCGT 59.905 41.667 0.00 0.00 32.71 3.73
22 23 4.094887 ACGGCATGTGTCAAATTACTCATC 59.905 41.667 0.00 0.00 32.71 2.92
24 25 3.407698 ACGGCATGTGTCAAATTACTCA 58.592 40.909 0.00 0.00 0.00 3.41
25 26 4.419522 AACGGCATGTGTCAAATTACTC 57.580 40.909 0.00 0.00 0.00 2.59
27 28 5.233263 ACAAAAACGGCATGTGTCAAATTAC 59.767 36.000 0.00 0.00 0.00 1.89
28 29 5.233050 CACAAAAACGGCATGTGTCAAATTA 59.767 36.000 0.00 0.00 39.60 1.40
30 31 3.555139 CACAAAAACGGCATGTGTCAAAT 59.445 39.130 0.00 0.00 39.60 2.32
31 32 2.926200 CACAAAAACGGCATGTGTCAAA 59.074 40.909 0.00 0.00 39.60 2.69
32 33 2.534298 CACAAAAACGGCATGTGTCAA 58.466 42.857 0.00 0.00 39.60 3.18
33 34 1.800655 GCACAAAAACGGCATGTGTCA 60.801 47.619 12.35 0.00 44.79 3.58
34 35 0.852136 GCACAAAAACGGCATGTGTC 59.148 50.000 12.35 4.26 44.79 3.67
35 36 0.459489 AGCACAAAAACGGCATGTGT 59.541 45.000 12.35 0.00 44.79 3.72
36 37 1.569708 AAGCACAAAAACGGCATGTG 58.430 45.000 8.08 8.08 45.54 3.21
37 38 2.307934 AAAGCACAAAAACGGCATGT 57.692 40.000 0.00 0.00 0.00 3.21
38 39 4.988708 AATAAAGCACAAAAACGGCATG 57.011 36.364 0.00 0.00 0.00 4.06
39 40 6.531240 CAGATAATAAAGCACAAAAACGGCAT 59.469 34.615 0.00 0.00 0.00 4.40
40 41 5.861251 CAGATAATAAAGCACAAAAACGGCA 59.139 36.000 0.00 0.00 0.00 5.69
41 42 5.288472 CCAGATAATAAAGCACAAAAACGGC 59.712 40.000 0.00 0.00 0.00 5.68
42 43 6.616947 TCCAGATAATAAAGCACAAAAACGG 58.383 36.000 0.00 0.00 0.00 4.44
44 45 7.090173 TGCTCCAGATAATAAAGCACAAAAAC 58.910 34.615 0.00 0.00 38.01 2.43
46 47 6.434028 ACTGCTCCAGATAATAAAGCACAAAA 59.566 34.615 0.00 0.00 38.01 2.44
48 49 5.355071 CACTGCTCCAGATAATAAAGCACAA 59.645 40.000 0.00 0.00 38.01 3.33
49 50 4.877823 CACTGCTCCAGATAATAAAGCACA 59.122 41.667 0.00 0.00 38.01 4.57
50 51 4.274459 CCACTGCTCCAGATAATAAAGCAC 59.726 45.833 0.00 0.00 38.01 4.40
51 52 4.454678 CCACTGCTCCAGATAATAAAGCA 58.545 43.478 0.00 0.00 40.45 3.91
52 53 3.251972 GCCACTGCTCCAGATAATAAAGC 59.748 47.826 0.00 0.00 35.18 3.51
69 70 0.035317 TTGCAGATCGACAAGCCACT 59.965 50.000 0.00 0.00 0.00 4.00
70 71 0.166814 GTTGCAGATCGACAAGCCAC 59.833 55.000 3.98 0.00 0.00 5.01
71 72 0.035317 AGTTGCAGATCGACAAGCCA 59.965 50.000 3.98 0.00 0.00 4.75
72 73 0.723981 GAGTTGCAGATCGACAAGCC 59.276 55.000 3.98 0.00 0.00 4.35
73 74 0.368227 CGAGTTGCAGATCGACAAGC 59.632 55.000 15.30 0.00 41.40 4.01
74 75 1.702886 ACGAGTTGCAGATCGACAAG 58.297 50.000 24.10 4.60 41.40 3.16
76 77 3.291809 TTAACGAGTTGCAGATCGACA 57.708 42.857 24.10 11.44 41.40 4.35
78 79 4.802039 GGTTATTAACGAGTTGCAGATCGA 59.198 41.667 24.10 7.17 41.40 3.59
79 80 4.804139 AGGTTATTAACGAGTTGCAGATCG 59.196 41.667 17.89 17.89 44.36 3.69
80 81 5.234543 GGAGGTTATTAACGAGTTGCAGATC 59.765 44.000 0.00 0.00 0.00 2.75
81 82 5.104900 AGGAGGTTATTAACGAGTTGCAGAT 60.105 40.000 0.00 0.00 0.00 2.90
84 85 4.250464 CAGGAGGTTATTAACGAGTTGCA 58.750 43.478 0.00 0.00 0.00 4.08
85 86 4.251268 ACAGGAGGTTATTAACGAGTTGC 58.749 43.478 0.00 0.00 0.00 4.17
87 88 4.776308 AGGACAGGAGGTTATTAACGAGTT 59.224 41.667 0.00 0.00 0.00 3.01
88 89 4.159879 CAGGACAGGAGGTTATTAACGAGT 59.840 45.833 0.00 0.00 0.00 4.18
89 90 4.683832 CAGGACAGGAGGTTATTAACGAG 58.316 47.826 0.00 0.00 0.00 4.18
91 92 3.195661 GCAGGACAGGAGGTTATTAACG 58.804 50.000 0.64 0.00 0.00 3.18
92 93 3.542648 GGCAGGACAGGAGGTTATTAAC 58.457 50.000 0.00 0.00 0.00 2.01
94 95 2.124411 GGGCAGGACAGGAGGTTATTA 58.876 52.381 0.00 0.00 0.00 0.98
96 97 0.988678 GGGGCAGGACAGGAGGTTAT 60.989 60.000 0.00 0.00 0.00 1.89
99 100 3.933542 GAGGGGCAGGACAGGAGGT 62.934 68.421 0.00 0.00 0.00 3.85
100 101 3.086600 GAGGGGCAGGACAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
101 102 2.040278 AGAGGGGCAGGACAGGAG 59.960 66.667 0.00 0.00 0.00 3.69
103 104 3.086600 GGAGAGGGGCAGGACAGG 61.087 72.222 0.00 0.00 0.00 4.00
113 114 2.343758 CACACACACCGGAGAGGG 59.656 66.667 9.46 1.48 46.96 4.30
115 116 1.665916 CTGCACACACACCGGAGAG 60.666 63.158 9.46 0.00 0.00 3.20
116 117 2.421314 CTGCACACACACCGGAGA 59.579 61.111 9.46 0.00 0.00 3.71
118 119 4.927782 GCCTGCACACACACCGGA 62.928 66.667 9.46 0.00 0.00 5.14
146 147 4.999939 GTTTGCAACGGGCCAGCG 63.000 66.667 4.39 1.48 43.89 5.18
168 1970 7.706179 TGAAATGAATTTCCGATTAAATCAGGC 59.294 33.333 12.11 0.00 44.16 4.85
196 1998 2.693074 GCCCCTGAAACTGAAACTGAAA 59.307 45.455 0.00 0.00 0.00 2.69
285 2087 1.619807 TTACCGCTTCTGCCCTACCC 61.620 60.000 0.00 0.00 35.36 3.69
301 2103 8.091385 ACGAAATGGGGAACGAATATTATTAC 57.909 34.615 0.00 0.00 0.00 1.89
312 2114 1.076332 GACTGACGAAATGGGGAACG 58.924 55.000 0.00 0.00 0.00 3.95
314 2116 0.682852 ACGACTGACGAAATGGGGAA 59.317 50.000 6.52 0.00 45.77 3.97
372 2174 3.627395 TCGATGCAAAGTAGGGAACAT 57.373 42.857 0.00 0.00 0.00 2.71
396 2214 4.385405 ACAGTCAGGAGCTGGCGC 62.385 66.667 0.00 0.00 41.46 6.53
397 2215 2.433838 CACAGTCAGGAGCTGGCG 60.434 66.667 0.00 0.00 41.46 5.69
398 2216 2.046507 CCACAGTCAGGAGCTGGC 60.047 66.667 0.00 0.00 38.22 4.85
399 2217 1.915266 TCCCACAGTCAGGAGCTGG 60.915 63.158 0.00 0.00 38.22 4.85
400 2218 1.190833 AGTCCCACAGTCAGGAGCTG 61.191 60.000 0.00 0.00 39.67 4.24
401 2219 0.902516 GAGTCCCACAGTCAGGAGCT 60.903 60.000 0.00 0.00 31.17 4.09
402 2220 1.594310 GAGTCCCACAGTCAGGAGC 59.406 63.158 0.00 0.00 31.17 4.70
403 2221 0.896019 ACGAGTCCCACAGTCAGGAG 60.896 60.000 0.00 0.00 31.17 3.69
406 2224 0.673985 TGAACGAGTCCCACAGTCAG 59.326 55.000 0.00 0.00 0.00 3.51
417 2235 3.384668 CGCCTGATGATAATGAACGAGT 58.615 45.455 0.00 0.00 0.00 4.18
418 2236 2.733552 CCGCCTGATGATAATGAACGAG 59.266 50.000 0.00 0.00 0.00 4.18
419 2237 2.364002 TCCGCCTGATGATAATGAACGA 59.636 45.455 0.00 0.00 0.00 3.85
420 2238 2.476619 GTCCGCCTGATGATAATGAACG 59.523 50.000 0.00 0.00 0.00 3.95
467 2285 5.495926 AATCAGAGAAGAAAAGCTCCAGA 57.504 39.130 0.00 0.00 0.00 3.86
468 2286 6.349197 GGAAAATCAGAGAAGAAAAGCTCCAG 60.349 42.308 0.00 0.00 0.00 3.86
469 2287 5.474876 GGAAAATCAGAGAAGAAAAGCTCCA 59.525 40.000 0.00 0.00 0.00 3.86
470 2288 5.391416 CGGAAAATCAGAGAAGAAAAGCTCC 60.391 44.000 0.00 0.00 0.00 4.70
472 2290 4.457257 CCGGAAAATCAGAGAAGAAAAGCT 59.543 41.667 0.00 0.00 0.00 3.74
473 2291 4.379918 CCCGGAAAATCAGAGAAGAAAAGC 60.380 45.833 0.73 0.00 0.00 3.51
474 2292 4.156739 CCCCGGAAAATCAGAGAAGAAAAG 59.843 45.833 0.73 0.00 0.00 2.27
488 2316 2.299727 TTTGGTCCAGCCCCGGAAAA 62.300 55.000 0.73 0.00 36.62 2.29
501 2329 1.278238 CTGAGGATACGCGTTTGGTC 58.722 55.000 20.78 10.75 46.39 4.02
507 2335 2.005960 GACCTGCTGAGGATACGCGT 62.006 60.000 19.17 19.17 42.93 6.01
508 2336 1.299468 GACCTGCTGAGGATACGCG 60.299 63.158 3.53 3.53 42.93 6.01
509 2337 0.461961 AAGACCTGCTGAGGATACGC 59.538 55.000 0.00 0.00 42.93 4.42
510 2338 2.028130 AGAAGACCTGCTGAGGATACG 58.972 52.381 0.00 0.00 42.93 3.06
511 2339 3.027412 TCAGAAGACCTGCTGAGGATAC 58.973 50.000 3.61 0.00 42.93 2.24
512 2340 3.388552 TCAGAAGACCTGCTGAGGATA 57.611 47.619 3.61 0.00 42.93 2.59
521 2698 5.157781 CGTTAACTCTCTTCAGAAGACCTG 58.842 45.833 8.95 5.02 44.27 4.00
530 2707 3.236896 AGGAACCCGTTAACTCTCTTCA 58.763 45.455 3.71 0.00 0.00 3.02
541 2718 3.390311 ACAGAAAGAACTAGGAACCCGTT 59.610 43.478 0.00 0.00 0.00 4.44
547 2724 4.158025 CCGAGCTACAGAAAGAACTAGGAA 59.842 45.833 0.00 0.00 0.00 3.36
553 2730 2.231721 ACCTCCGAGCTACAGAAAGAAC 59.768 50.000 0.00 0.00 0.00 3.01
568 2810 2.516448 TCCAAGCTGGATACCTCCG 58.484 57.895 0.00 0.00 42.67 4.63
635 2877 1.365699 TTTGGGAATCGCTCGCTAAC 58.634 50.000 0.00 0.00 37.86 2.34
643 2885 4.092821 GCAGGTTTTTAATTTGGGAATCGC 59.907 41.667 0.00 0.00 0.00 4.58
644 2886 4.629634 GGCAGGTTTTTAATTTGGGAATCG 59.370 41.667 0.00 0.00 0.00 3.34
645 2887 4.629634 CGGCAGGTTTTTAATTTGGGAATC 59.370 41.667 0.00 0.00 0.00 2.52
646 2888 4.041075 ACGGCAGGTTTTTAATTTGGGAAT 59.959 37.500 0.00 0.00 0.00 3.01
667 2911 5.535333 TCTACTTTACTTTTGTCTCCCACG 58.465 41.667 0.00 0.00 0.00 4.94
672 2916 7.096558 CGCCGATATCTACTTTACTTTTGTCTC 60.097 40.741 0.34 0.00 0.00 3.36
686 2930 4.431809 TCTAGCTAGTCGCCGATATCTAC 58.568 47.826 20.10 0.00 40.39 2.59
687 2931 4.732672 TCTAGCTAGTCGCCGATATCTA 57.267 45.455 20.10 0.00 40.39 1.98
688 2932 3.613494 TCTAGCTAGTCGCCGATATCT 57.387 47.619 20.10 0.00 40.39 1.98
689 2933 3.685756 AGTTCTAGCTAGTCGCCGATATC 59.314 47.826 20.10 0.00 40.39 1.63
690 2934 3.677190 AGTTCTAGCTAGTCGCCGATAT 58.323 45.455 20.10 0.00 40.39 1.63
736 2980 7.344871 AGACTAGTGTGGTATACTTTATTGGCT 59.655 37.037 0.00 0.00 0.00 4.75
757 3010 1.267806 GTCGTTGTTCCGTGGAGACTA 59.732 52.381 0.00 0.00 0.00 2.59
884 3194 2.417651 CGCCTCCGTTTATAAGTGGTGA 60.418 50.000 8.08 0.00 0.00 4.02
886 3196 1.134610 CCGCCTCCGTTTATAAGTGGT 60.135 52.381 5.32 0.00 0.00 4.16
913 3226 2.021457 ACTGGGTCGTTTGTTTCTTGG 58.979 47.619 0.00 0.00 0.00 3.61
927 3240 0.827507 GTTTGGTGGATGCACTGGGT 60.828 55.000 17.44 0.00 0.00 4.51
931 3244 1.331214 CTTGGTTTGGTGGATGCACT 58.669 50.000 17.44 0.00 0.00 4.40
937 3250 1.725169 CCTCCCCTTGGTTTGGTGGA 61.725 60.000 0.00 0.00 35.30 4.02
949 3266 0.778083 GGTCACTTTTTCCCTCCCCT 59.222 55.000 0.00 0.00 0.00 4.79
950 3267 0.251653 GGGTCACTTTTTCCCTCCCC 60.252 60.000 0.00 0.00 38.29 4.81
955 3273 1.878088 GAACGAGGGTCACTTTTTCCC 59.122 52.381 0.00 0.00 41.36 3.97
957 3275 1.070108 GCGAACGAGGGTCACTTTTTC 60.070 52.381 0.00 0.00 0.00 2.29
964 3282 0.896940 AGTTAGGCGAACGAGGGTCA 60.897 55.000 4.82 0.00 43.37 4.02
1033 3354 1.950973 GCGACCCAGAGGAGGAGAAC 61.951 65.000 0.00 0.00 36.73 3.01
1587 3918 5.182950 CACAGGCAATTGTATGACTTGGTTA 59.817 40.000 15.99 0.00 36.18 2.85
1782 4113 1.152881 GCAGCCGATGAAATCCCCT 60.153 57.895 0.00 0.00 41.39 4.79
1894 4225 1.750780 GGCAGGGCAGGCTAGAAAC 60.751 63.158 0.00 0.00 0.00 2.78
1907 4238 4.351054 AAACCGAGGCAGGGCAGG 62.351 66.667 4.11 5.97 35.02 4.85
1908 4239 2.747855 GAAACCGAGGCAGGGCAG 60.748 66.667 4.11 0.00 35.02 4.85
1909 4240 2.632602 TTTGAAACCGAGGCAGGGCA 62.633 55.000 4.11 0.00 35.02 5.36
1910 4241 1.460273 TTTTGAAACCGAGGCAGGGC 61.460 55.000 4.11 0.00 35.02 5.19
1911 4242 1.036707 TTTTTGAAACCGAGGCAGGG 58.963 50.000 4.11 0.00 35.02 4.45
1938 4269 6.403527 GGCGGTGTAAATTAAGGATACGTTTT 60.404 38.462 0.00 0.00 46.39 2.43
1939 4270 5.065090 GGCGGTGTAAATTAAGGATACGTTT 59.935 40.000 0.00 0.00 46.39 3.60
1940 4271 4.571984 GGCGGTGTAAATTAAGGATACGTT 59.428 41.667 0.00 0.00 46.39 3.99
1941 4272 4.122046 GGCGGTGTAAATTAAGGATACGT 58.878 43.478 0.00 0.00 46.39 3.57
1942 4273 4.374399 AGGCGGTGTAAATTAAGGATACG 58.626 43.478 0.00 0.00 46.39 3.06
1943 4274 5.608449 AGAGGCGGTGTAAATTAAGGATAC 58.392 41.667 0.00 0.00 0.00 2.24
1944 4275 5.881923 AGAGGCGGTGTAAATTAAGGATA 57.118 39.130 0.00 0.00 0.00 2.59
1956 4309 0.693049 ATTTCTCCAAGAGGCGGTGT 59.307 50.000 0.00 0.00 33.74 4.16
1957 4310 2.280628 GTATTTCTCCAAGAGGCGGTG 58.719 52.381 0.00 0.00 33.74 4.94
1958 4311 1.209747 GGTATTTCTCCAAGAGGCGGT 59.790 52.381 0.00 0.00 33.74 5.68
1960 4313 2.168521 TGAGGTATTTCTCCAAGAGGCG 59.831 50.000 0.00 0.00 33.04 5.52
1961 4314 3.055094 TGTGAGGTATTTCTCCAAGAGGC 60.055 47.826 0.00 0.00 33.04 4.70
1962 4315 4.020218 TGTGTGAGGTATTTCTCCAAGAGG 60.020 45.833 0.00 0.00 33.04 3.69
2002 4355 1.388065 CCCTGCACTCGACCCTCTAG 61.388 65.000 0.00 0.00 0.00 2.43
2020 4373 4.335594 ACAGCGATAAGAAATGTTTAGGCC 59.664 41.667 0.00 0.00 0.00 5.19
2169 4529 7.786030 ACTCAACATCTAGTATATGCAACAGT 58.214 34.615 0.00 0.00 0.00 3.55
2170 4530 8.654230 AACTCAACATCTAGTATATGCAACAG 57.346 34.615 0.00 0.00 0.00 3.16
2171 4531 9.448438 AAAACTCAACATCTAGTATATGCAACA 57.552 29.630 0.00 0.00 0.00 3.33
2219 4579 6.293027 CCGTTCATGTAATATTAACCCGAACC 60.293 42.308 15.56 0.00 0.00 3.62
2224 4584 6.293790 GGCTTCCGTTCATGTAATATTAACCC 60.294 42.308 0.00 0.00 0.00 4.11
2233 4593 1.948611 GCTGGGCTTCCGTTCATGTAA 60.949 52.381 0.00 0.00 0.00 2.41
2241 4601 1.678970 GAATTGGCTGGGCTTCCGT 60.679 57.895 0.00 0.00 0.00 4.69
2287 4647 1.083489 GCAATCACGTCCAAATCGGA 58.917 50.000 0.00 0.00 43.61 4.55
2330 4695 5.817816 CCGCCAGATACAAGAAGAGTAAAAT 59.182 40.000 0.00 0.00 0.00 1.82
2383 4748 3.192541 ACATGCGCACAATCCTATACA 57.807 42.857 14.90 0.00 0.00 2.29
2384 4749 4.552166 AAACATGCGCACAATCCTATAC 57.448 40.909 14.90 0.00 0.00 1.47
2387 4752 2.163412 GGAAAACATGCGCACAATCCTA 59.837 45.455 14.90 0.00 0.00 2.94
2388 4753 1.067635 GGAAAACATGCGCACAATCCT 60.068 47.619 14.90 0.00 0.00 3.24
2389 4754 1.336702 TGGAAAACATGCGCACAATCC 60.337 47.619 14.90 16.80 0.00 3.01
2390 4755 1.720852 GTGGAAAACATGCGCACAATC 59.279 47.619 14.90 7.12 0.00 2.67
2391 4756 1.782044 GTGGAAAACATGCGCACAAT 58.218 45.000 14.90 0.00 0.00 2.71
2392 4757 0.593518 CGTGGAAAACATGCGCACAA 60.594 50.000 14.90 0.00 0.00 3.33
2393 4758 1.009108 CGTGGAAAACATGCGCACA 60.009 52.632 14.90 0.00 0.00 4.57
2394 4759 1.729131 CCGTGGAAAACATGCGCAC 60.729 57.895 14.90 0.00 34.66 5.34
2395 4760 2.642129 CCGTGGAAAACATGCGCA 59.358 55.556 14.96 14.96 34.66 6.09
2396 4761 2.126502 CCCGTGGAAAACATGCGC 60.127 61.111 0.00 0.00 34.66 6.09
2397 4762 1.081509 CACCCGTGGAAAACATGCG 60.082 57.895 0.00 0.00 34.66 4.73
2398 4763 0.387565 AACACCCGTGGAAAACATGC 59.612 50.000 0.00 0.00 34.66 4.06
2399 4764 1.407258 ACAACACCCGTGGAAAACATG 59.593 47.619 0.00 0.00 35.80 3.21
2400 4765 1.679153 GACAACACCCGTGGAAAACAT 59.321 47.619 0.00 0.00 34.19 2.71
2401 4766 1.096416 GACAACACCCGTGGAAAACA 58.904 50.000 0.00 0.00 34.19 2.83
2402 4767 0.028374 CGACAACACCCGTGGAAAAC 59.972 55.000 0.00 0.00 34.19 2.43
2403 4768 1.096386 CCGACAACACCCGTGGAAAA 61.096 55.000 0.00 0.00 34.19 2.29
2404 4769 1.524165 CCGACAACACCCGTGGAAA 60.524 57.895 0.00 0.00 34.19 3.13
2405 4770 1.969200 TTCCGACAACACCCGTGGAA 61.969 55.000 0.00 0.00 33.34 3.53
2406 4771 1.969200 TTTCCGACAACACCCGTGGA 61.969 55.000 0.00 0.00 34.19 4.02
2407 4772 1.096386 TTTTCCGACAACACCCGTGG 61.096 55.000 0.00 0.00 34.19 4.94
2408 4773 0.948678 ATTTTCCGACAACACCCGTG 59.051 50.000 0.00 0.00 0.00 4.94
2409 4774 1.682740 AATTTTCCGACAACACCCGT 58.317 45.000 0.00 0.00 0.00 5.28
2410 4775 3.068560 TCTAATTTTCCGACAACACCCG 58.931 45.455 0.00 0.00 0.00 5.28
2411 4776 3.120442 CGTCTAATTTTCCGACAACACCC 60.120 47.826 0.00 0.00 0.00 4.61
2412 4777 3.666111 GCGTCTAATTTTCCGACAACACC 60.666 47.826 0.00 0.00 0.00 4.16
2413 4778 3.476181 GCGTCTAATTTTCCGACAACAC 58.524 45.455 0.00 0.00 0.00 3.32
2414 4779 2.481185 GGCGTCTAATTTTCCGACAACA 59.519 45.455 0.00 0.00 0.00 3.33
2415 4780 2.481185 TGGCGTCTAATTTTCCGACAAC 59.519 45.455 0.00 0.00 35.00 3.32
2416 4781 2.768698 TGGCGTCTAATTTTCCGACAA 58.231 42.857 0.00 0.00 35.00 3.18
2417 4782 2.459060 TGGCGTCTAATTTTCCGACA 57.541 45.000 0.00 0.00 35.68 4.35
2418 4783 3.195661 AGATGGCGTCTAATTTTCCGAC 58.804 45.455 7.63 0.00 34.69 4.79
2419 4784 3.536956 AGATGGCGTCTAATTTTCCGA 57.463 42.857 7.63 0.00 34.69 4.55
2420 4785 5.499047 GTTAAGATGGCGTCTAATTTTCCG 58.501 41.667 10.14 0.00 35.67 4.30
2437 4834 0.609151 TGTCCGCGGAATGGTTAAGA 59.391 50.000 32.93 0.00 0.00 2.10
2458 4855 5.354234 TCATATCCGAAGAGAAAACAAAGGC 59.646 40.000 0.00 0.00 0.00 4.35
2471 4869 6.593978 CGGCTAAGAAATTTCATATCCGAAG 58.406 40.000 28.54 10.69 40.50 3.79
2496 4894 3.318839 TGGACCAAGACAAATTTCAGCAG 59.681 43.478 0.00 0.00 0.00 4.24
2536 4934 2.508663 GGCCAACTACTCGGTCGC 60.509 66.667 0.00 0.00 0.00 5.19
2551 4952 4.819088 GGATTTCTCAGGATTCTAGTTGGC 59.181 45.833 0.00 0.00 0.00 4.52
2697 5139 3.474798 TCTCCTCATACCTCACCACTT 57.525 47.619 0.00 0.00 0.00 3.16
2726 5171 1.075601 AACCTCCTCATTGAAGCCCA 58.924 50.000 0.00 0.00 0.00 5.36
2755 5200 2.279073 CTCACCGAGGAGCCCCTA 59.721 66.667 0.00 0.00 44.53 3.53
2772 5217 0.692419 TTCTCCTCTCTCCCATGCCC 60.692 60.000 0.00 0.00 0.00 5.36
2776 5221 1.936631 ACTCCTTCTCCTCTCTCCCAT 59.063 52.381 0.00 0.00 0.00 4.00
2808 5256 1.811778 ATGGCCCTCATGAAGCTCTA 58.188 50.000 15.02 5.18 34.22 2.43
2836 5285 1.518431 ATTTCTTGGGTGGGAGGGGG 61.518 60.000 0.00 0.00 0.00 5.40
2837 5286 0.324645 CATTTCTTGGGTGGGAGGGG 60.325 60.000 0.00 0.00 0.00 4.79
2838 5287 0.324645 CCATTTCTTGGGTGGGAGGG 60.325 60.000 0.00 0.00 42.33 4.30
2839 5288 3.288099 CCATTTCTTGGGTGGGAGG 57.712 57.895 0.00 0.00 42.33 4.30
2847 5296 0.906282 AGCTTGGGCCCATTTCTTGG 60.906 55.000 29.23 10.88 46.00 3.61
2848 5297 0.533951 GAGCTTGGGCCCATTTCTTG 59.466 55.000 29.23 12.73 39.73 3.02
2849 5298 0.615827 GGAGCTTGGGCCCATTTCTT 60.616 55.000 29.23 10.08 39.73 2.52
2850 5299 1.000866 GGAGCTTGGGCCCATTTCT 59.999 57.895 29.23 22.29 39.73 2.52
2851 5300 2.418083 CGGAGCTTGGGCCCATTTC 61.418 63.158 29.23 22.21 39.73 2.17
2852 5301 2.362889 CGGAGCTTGGGCCCATTT 60.363 61.111 29.23 14.65 39.73 2.32
2865 5314 3.181475 ACATGTCATACCTAGTTGCGGAG 60.181 47.826 0.00 0.00 0.00 4.63
2866 5315 2.764010 ACATGTCATACCTAGTTGCGGA 59.236 45.455 0.00 0.00 0.00 5.54
2867 5316 3.179443 ACATGTCATACCTAGTTGCGG 57.821 47.619 0.00 0.00 0.00 5.69
2868 5317 4.520743 CAACATGTCATACCTAGTTGCG 57.479 45.455 0.00 0.00 31.37 4.85
2870 5319 5.163723 CCAAGCAACATGTCATACCTAGTTG 60.164 44.000 0.00 8.07 39.32 3.16
2871 5320 4.943705 CCAAGCAACATGTCATACCTAGTT 59.056 41.667 0.00 0.00 0.00 2.24
2872 5321 4.019321 ACCAAGCAACATGTCATACCTAGT 60.019 41.667 0.00 0.00 0.00 2.57
2873 5322 4.333649 CACCAAGCAACATGTCATACCTAG 59.666 45.833 0.00 0.00 0.00 3.02
2874 5323 4.260985 CACCAAGCAACATGTCATACCTA 58.739 43.478 0.00 0.00 0.00 3.08
2875 5324 3.084039 CACCAAGCAACATGTCATACCT 58.916 45.455 0.00 0.00 0.00 3.08
2876 5325 2.164219 CCACCAAGCAACATGTCATACC 59.836 50.000 0.00 0.00 0.00 2.73
2877 5326 2.164219 CCCACCAAGCAACATGTCATAC 59.836 50.000 0.00 0.00 0.00 2.39
2878 5327 2.040947 TCCCACCAAGCAACATGTCATA 59.959 45.455 0.00 0.00 0.00 2.15
2879 5328 1.203038 TCCCACCAAGCAACATGTCAT 60.203 47.619 0.00 0.00 0.00 3.06
2880 5329 0.184692 TCCCACCAAGCAACATGTCA 59.815 50.000 0.00 0.00 0.00 3.58
2881 5330 1.270550 CTTCCCACCAAGCAACATGTC 59.729 52.381 0.00 0.00 0.00 3.06
2882 5331 1.331214 CTTCCCACCAAGCAACATGT 58.669 50.000 0.00 0.00 0.00 3.21
2883 5332 1.270550 GACTTCCCACCAAGCAACATG 59.729 52.381 0.00 0.00 0.00 3.21
2884 5333 1.620822 GACTTCCCACCAAGCAACAT 58.379 50.000 0.00 0.00 0.00 2.71
2885 5334 0.817634 CGACTTCCCACCAAGCAACA 60.818 55.000 0.00 0.00 0.00 3.33
2886 5335 0.818040 ACGACTTCCCACCAAGCAAC 60.818 55.000 0.00 0.00 0.00 4.17
2887 5336 0.106918 AACGACTTCCCACCAAGCAA 60.107 50.000 0.00 0.00 0.00 3.91
2888 5337 0.534203 GAACGACTTCCCACCAAGCA 60.534 55.000 0.00 0.00 0.00 3.91
2889 5338 1.235281 GGAACGACTTCCCACCAAGC 61.235 60.000 0.00 0.00 40.38 4.01
2890 5339 0.396811 AGGAACGACTTCCCACCAAG 59.603 55.000 1.35 0.00 46.79 3.61
2891 5340 0.841289 AAGGAACGACTTCCCACCAA 59.159 50.000 1.35 0.00 46.79 3.67
2892 5341 0.841289 AAAGGAACGACTTCCCACCA 59.159 50.000 1.35 0.00 46.79 4.17
2893 5342 1.202722 TGAAAGGAACGACTTCCCACC 60.203 52.381 1.35 0.00 46.79 4.61
2894 5343 2.249844 TGAAAGGAACGACTTCCCAC 57.750 50.000 1.35 0.00 46.79 4.61
2895 5344 3.146066 CATTGAAAGGAACGACTTCCCA 58.854 45.455 1.35 0.00 46.79 4.37
2896 5345 3.058224 CACATTGAAAGGAACGACTTCCC 60.058 47.826 1.35 0.00 46.79 3.97
2897 5346 3.564225 ACACATTGAAAGGAACGACTTCC 59.436 43.478 0.00 0.00 46.03 3.46
2898 5347 4.813296 ACACATTGAAAGGAACGACTTC 57.187 40.909 0.00 0.00 0.00 3.01
2899 5348 4.514066 GGTACACATTGAAAGGAACGACTT 59.486 41.667 0.00 0.00 0.00 3.01
2900 5349 4.062991 GGTACACATTGAAAGGAACGACT 58.937 43.478 0.00 0.00 0.00 4.18
2901 5350 4.062991 AGGTACACATTGAAAGGAACGAC 58.937 43.478 0.00 0.00 0.00 4.34
2902 5351 4.345859 AGGTACACATTGAAAGGAACGA 57.654 40.909 0.00 0.00 0.00 3.85
2903 5352 6.548441 TTAAGGTACACATTGAAAGGAACG 57.452 37.500 0.00 0.00 0.00 3.95
2904 5353 9.191995 CAAATTAAGGTACACATTGAAAGGAAC 57.808 33.333 0.00 0.00 0.00 3.62
2905 5354 8.364142 CCAAATTAAGGTACACATTGAAAGGAA 58.636 33.333 0.00 0.00 0.00 3.36
2906 5355 7.524698 GCCAAATTAAGGTACACATTGAAAGGA 60.525 37.037 0.00 0.00 0.00 3.36
2907 5356 6.589907 GCCAAATTAAGGTACACATTGAAAGG 59.410 38.462 0.00 0.00 0.00 3.11
2908 5357 6.307800 CGCCAAATTAAGGTACACATTGAAAG 59.692 38.462 0.00 0.00 0.00 2.62
2909 5358 6.153067 CGCCAAATTAAGGTACACATTGAAA 58.847 36.000 0.00 0.00 0.00 2.69
2910 5359 5.336055 CCGCCAAATTAAGGTACACATTGAA 60.336 40.000 0.00 0.00 0.00 2.69
2911 5360 4.156922 CCGCCAAATTAAGGTACACATTGA 59.843 41.667 0.00 0.00 0.00 2.57
2912 5361 4.420168 CCGCCAAATTAAGGTACACATTG 58.580 43.478 0.00 0.00 0.00 2.82
2913 5362 3.119280 GCCGCCAAATTAAGGTACACATT 60.119 43.478 0.00 0.00 0.00 2.71
2914 5363 2.425668 GCCGCCAAATTAAGGTACACAT 59.574 45.455 0.00 0.00 0.00 3.21
2915 5364 1.813786 GCCGCCAAATTAAGGTACACA 59.186 47.619 0.00 0.00 0.00 3.72
2916 5365 2.554806 GCCGCCAAATTAAGGTACAC 57.445 50.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.