>input_sequence_65017
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-------------------------------------ATGCCTCTCTTGATATGCCACCGG---CTGCTGCTGGTTCTCC
TCCTCTGG---GTCGCCGCCTCCCATGGCGATTCATCTGATGATGGTGCTTACGACACCTCCATGTGCCTGAATCAAAAT
TACACCTGCGGAGGCGTGAACATCACCTACCCGTTCTATCTCGCCGGGGAGACAAAAGATGTCAAGGGCAACGCCAACTC
CTACTGCGGCTACCCTGGCCTGGGGATCCTCTGCGACGACGAGAAGCCCATCCTGCAGCTCAACGGCGCCGCC---AACT
ACACGGTGACGAGCTTCGACGACGCGCTCGCAACGCTCTCTCTAGCCGATCCGGAAGT---CGAAGACGGCAAGCCCTGC
CCGAGACCAAGAATCAACCGCAACATCACTTTTCAAGAGGGATCGCTGCTGTTCTTTCCTGACAGCGCGGTCGATTACCT
TATCTTCTTCATCGGCTGCAACTTCAACTTTACCTTCTACAAACCGAGTAGCATCTACCCGATCAGCTGCGAAAGCTTTG
ACGATGGTCCTGGTCCTG-GGCTATCGTTTGTGCTTCCGGATGATGCAGTGCCCGCCGGCAACTGGGTGCAAGCGTGTAA
CCAAGTCATACAATTGCCTGTGCACAAATACGGCGAGATCAACCTTACTGACCCTGGATGGACAAACGGGAGTAGATATG
CCAGTGTTCTTCGTCAGGAATTCCAGCTGGGATGGAACGAGAGCGCAAAGCCCCCAGCATGTACCCAGTGCGAGGGATCC
AATTCCAGGGCAAGGTGCGGTTACAGCCGGACAGGGGATTTCATCGGCTGCTTGTGCCCTGACGGCCGAGTACACTCCGA
TAATAATTGCAATAAAGCCCGTAAGTTCTCTGAATCTGAAGCTTTTTCTTTGCAGAAGTTGCGTGTTTCTAGCCTGCCCT
GCCCTGCCTCGGTTTCAAAAAAATAA------------------------------------------------------
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>chr3B_1_TraesCS3B01G295600
TTCATCTAGAGTAGACAAGAACGATGAGTAATTTGACACATGCCGTTTTTGTGCTTTATTATCTGGAGCAGTGGCTTGTC
GATCTGCAACTCGTTAATAACCTCCTGTCCTGCCCCTCTCCGGTGTGTGTGCAGGCGCGGTACTGCCGCTG---------
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--------------------------------GCCCGTTGCAAACGCCAGCCTGATTTAATCGGAAATTCATTTCAGTTT
CAGTTTCAGTTTCAGGGGCGCTTGTGCCTGAAAAACGAACGAAACCAAGAGCGCGTCCGACCATTTCGAAAAAAGAATAG
CGCGTGGGGTAGGGCAGAAGCGGTAATAATATTCGTTCCCCATTTCGTCAGTCGTCAGTCGACAAGGATGGTTCCCGACC
TTTTCCACACCCCATGTTCCCTACTTT----------------GCATCGAAGCGCGCCAGCTCCTGACTGTGGGACTCGT
TCATTATCATCAGGCGGACCGCTGCCTCGCGTTCGAGAAGCTCTTCTGGAGCT----------TTTCTTCTCTGATTTTC
CGGGGCTGGACCAAACGCGT-----ATCCT--------------------------------------------------
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------------------------------------------------------CAGCAGGTCTTCTGAAGAGAGTTAAC
GGGTTCCTAGTTCTTTCT--------------------------------------------------------------
---GTAGCTCGGAGGTATCCAGCTTGGATTACCACCAACACCAAGTGCACTGTTTTTACAGAGACTATTAAGAGAAGTTA
GCGAGCGATTCCCAAA--TTAAAAACCTGCCGTGGGAGACAAAAGTAAAGTAGATATCGGCGACTAGCTAGAACTAGAAG
CCTTTCTTCCACGCGGCTGAGCCAATAAA---------GTATACCACACTAGTCTCCACGGAACAACGACGGGAGGTACC
AGTACAGCAGACGACTTGCGTGGCACCCTCGCGTTATGTATGCGA-----------GACACCGGACTGGTCAAAGGTT--
--------------------------------------------GCCAGCCGCCGGAGAAACTCGCAAGGCCTTCACCAC
TTATAAACGGAGGCGG---GCAGCGCCAAGAAACAAACGACCCAGTGCAT----CCACCAAACCAAGGGGA-GGGAAAAA
GTGACCCTCGTTCGCCTAACTCCATTAGCCCATAGCCATGCCTCTCTTGATATGCCACCGG---CTGCTGCTGGTTCTCC
TCCTCTGG---GTCGCCGCCTCCCATGGCGATTCATCTGATGATGGTGCTTACGACACCTCCATGTGCCTGAATCAAAAT
TACACCTGCGGAGGCGTGAACATCACCTACCCGTTCTATCTCGCCGGGGAGACAAAAGATGTCAAGGGCAACGCCAACTC
CTACTGCGGCTACCCTGGCCTGGGGATCCTCTGCGACGACGAGAAGCCCATCCTGCAGCTCAACGGCGCCGCC---AACT
ACACGGTGACGAGCTTCGACGACGCGCTCGCAACGCTCTCTCTAGCCGATCCGGAAGT---CGAAGACGGCAAGCCCTGC
CCGAGACCAAGAATCAACCGCAACATCACTTTTCAAGAGGGATCGCTGCTGTTCTTTCCTGACAGCGCGGTCGATTACCT
TATCTTCTTCATCGGCTGCAACTTCAACTTTACCTTCTACAAACCGAGTAGCATCTACCCGATCAGCTGCGAAAGCTTTG
ACGATGGTCCTGGTCCTG-GGCTATCGTTTGTGCTTCCGGATGATGCAGTGCCCGCCGGCAACTGGGTGCAAGCGTGTAA
CCAAGTCATACAATTGCCTGTGCACAAATACGGCGAGATCAACCTTACTGACCCTGGATGGACAAACGGGAGTAGATATG
CCAGTGTTCTTCGTCAGGAATTCCAGCTGGGATGGAACGAGAGCGCAAAGCCCCCAGCATGTACCCAGTGCGAGGGATCC
AATTCCAGGGCAAGGTGCGGTTACAGCCGGACAGGGGATTTCATCGGCTGCTTGTGCCCTGACGGCCGAGTACACTCCGA
TAATAATTGCAATAAAGCCCGTAAGTTCTCTGAATCTGAAGCTTTTTCTTTGCAGAAGTTGCGTGTTTCTAGCCTGCCCT
GCCCTGCCTCGGTTTCAAAAAAATAAAAAAAACGT----------------------ATCCTTAATTTACACCGCCTCTT
GGAGAAATACCTCACACACATGCTTTCTCACCAACTAGAGGGTCGAGTGCAGGGCCTAAACATTTCTTATCGCTGTAAAC
AAAGCCTATCAGACCAC-ATAAATCTAAGCCTTCAGTTCCGTCAGTTTGACTTCCAGGTGTGAGAGAGCCTGCAAC---C
C---TTTTTTGGCGGGGGCGAGAGAGCCTGCAACTTACACCAACTTGTACTGTTGCATATACTAGATGTTGAGTTTTTTT
TTCCTGTGGCATGGTAATGGTTCGGGTTAATATTACATGAACGGAAGCCCAGCCAATTCTAACTCGTAGACGAGACCAAT
TCCCGCTCCGATTTGGACGTGATTGCTTCATGTGAA-----GTAAACACGTTCTATTTTACTCTTCTTGTATCTGGCGGG
GAACACATTTCTATTACTCGAATGACATGTATAGGATTGTGCGCATGTTTTCCACGGGTGTTGTCGGA------------
--------------------AAATTAGACGCCATCTTAACCATTCCGCGGACATGCCTTTG-TTTTCTCTTCGGATATGA
AATTTCTTAGCCGCTGCTGAAATTTGTCTTGGTCCACCGAGGACCTTTTTTTTG---CGACCGAGTAGTTGGCCAACTAG
AATCCTGAGAAATCCAT-----------------------------------------GACACCTCCACAATATCTCCAT
CTTCTTCGTCTCATCCAGTTCCGACTTTAGCGGTGATGATACATCTGGTTGCAGAGCCATGCGGCTCTAGGACTGGATGC
GACGCGTGGGCACGTCGCAAGTGGTGAGGTATGAGGAGAAAGTGAGG---TGGGCTTCAATGAGGAGGTTAAACAGGAGT
AGGGGCTCCTCGGTGAGGGCATGGGAGA---GAGGAGAAGGAGTTGCGACCAGTGT-AGAGCTTCATGAGGGCCATACAA
GGCCCCCCCTCCCACCCAAGAAATGGGCCCAAGCTCCGCAACTAGGTATGACATGTTGCTTGGTGGGAAGTCGTTCCTTT
CAATGTGTACCTTAATTTGGCGGC
>chr3A_114
GCTGC---------------------------------TGCTGCTTCTCCTCTTGGTTGCCGTTGCCGCCTCTCATGGCG
ATTCATCCGATGACACCTACGATTCC---TCCATGTGCCTGAACGAGCCTTCCACCTGCGGAGGCGTGAACATCAGATAC
CCGTTCTATCTCGCCGGGAAGACAAATGATCTGAAGGGCAACAACAACTCCTACTGCGGGTACCCTGGCCTGGGGATCCT
CTGCGACGACGACAAGCCCATCCTGCAGCTCAGCGGCATCGCCAACTACACCGTCAAGAGCATCGACGGCGCAGCACCAG
GTCATAGTGACCCAAGACGAGGAGACCGACTTTGCTTCGGTCTTCCGCGAATCAGCTCCACGCTAGTCCTAGCGGCACAC
CAACCAAGCAAAATTTCCACCAGACCCGGTCGCGCCCGCGATTTAAATACGGCGTCGCTCGCCGGAGCCTGTGGCGTGCA
GGACCGAGCAGAAAACAGCCAGCCAGATTCATCTTCCTCCTCTCGCCAATGGCTCACCTACCACCACACTCGCTCGTCCT
CCTCTTCCTCGCCGTCCATGTCTTCCTCGCCTCCCATGGCTCCCCTCTTCCGCCGTCTAGCACCTACGATGATTCCATTT
GCTCGGAGTCGTTCAGGTGTGGCAGCGTTGACATCACATATCCATTCTATCTGTCAAACGCCACTGAAGCAACCCCTGAT
TACACACCCTACTCATGCGGCTACACCGATTTGAAGATCTTCTGCCAAGGCGAGGGGAAGACCGCGATCGCAACCCTTCA
ACTCGGCCGAGACAAGTTACACAACTACACCGTCCAGAACATCTTCTACGAAAATCACGCCATCATTCTGAGGGACACTG
AAGCTTTATTAGCGGCGGCAAGTGTCCCACGGTCACCCACAACGTGACATTCGACAGGGAGTGGCTAAACTACACCGAGT
CCTTGGAGGAGCTCACCTTCTTCTTCGGCTGCCACTCCACG---------------------------------------
---GAGAGCGATCAGCCGGCTCCTGATCCTCCGCTAGACTTAGTTCCAGATCGACTGCAAAGGGTTCAGTCCGCCTCCAG
GCAGTGGAGACGGTTTTTCCTTCGTCTTCAGCTCTGAGGAAGGCAACGTTTCTCGGGAGCACGGACTGGCTGAGTACTGT
AGGCAGAAGGTCATCGTGCCGGTACTCCAGGAAGATGCTGTGAGAAGTGGTCTGCTCGTGTTGCCGAGGGAATATGGCGT
CGTGCTTGGACAGGGCTTCGAGTTGGAATGGAAGCAAAGC---AAGGATCGGCAATGCGAGCTGTGCGAGAAATCTTATG
GACGCTGCGCCTACAGCGAGAAGAAGGAATTCCTTTCTTGCTTGTGCTCCGGCGGGATCTGCAAGAGCAATCCAAATCCT
CCATCATCAGGTAAGTCCTTCACAACCGGTCCTTCAATTTCATTGCCGTTTGAAAACAAAACTGCCGATGGTAGCATGAC
TCGCTTGCCAATTGCCATTTCGCCGAAAGCCAGACCCAATTCCGTTGTGTGAACCCACGCATGTTCATCTAGAGTATACA
AGAATGACGAGTAATTTGACATGCCGTTTTGGCGCTTTCTTATCTAGAGCAAGCAGTTGCTTGGCGATTTGCAACTCGTA
ACCTCCTGTCCTGCCTCTCTCCGGTGGATCCGGCTTGCTTGCTCCCTCTCTATGTTCCTATCCATGCTCTCACTTCATCC
CATGGCTGTCTTTTTTTCTTTTTCCTTTCTAATCTAATCATCTTCCCCCCTATTTTTAAGGGGGTGGGGCCGGGCCTTAT
TTTGCTCTAATCAAATCAAGTCACGTATGCGGGAGCACGGATGGGAGCATGGGAAGGGAGCAGGCAAGTCTCGTCCCTCT
CCGGTGTGTGTGCACGCGCGTTGCTGCTGCTTGCCCGTCGCAAACGCCAATATGATTTGATCGGAAATCCATTTCAGGAG
TGCTTGCCCGAAA------------------------AACGAAACCGAGAGCGCGTATGTCGGTTTCGAAAACAGAATAG
CGCGTGAGAAGC------------AATAATATTTGCTCGCCATTTCGTCAGTG-------GACAAGGACGGTTCCCGACC
TTTTCCACGCCCCTTGTTCCCTACCATGTACCGAAACGCGCCAGC----------------TCGTGACTGCGGG----GT
TCATTATCATCAGGCGGACCGCTGCCTCCTGTGGAGCTTTTCTTCT------T----------TTTCTTCTCTGAGTTTC
CCGGGTTAAAGCATCTCGAGCCGTTGGAGCCCCCAGGACAATCGCCGGACCAAAAATAGCACGTCCTAAGAGGCAAAATA
TTTTCGTCGGATGAAATGCGAGTACGTTTTTCCAGTCGTTGGTGCCCCCAAGAC---CGTCGGGCAAAAAGTGATTAGGT
GGGTCAGAAAAAAGGAGGAGTGGGGGAATAGGATTGGTTGTTACTTCCGTCGGCGCCCTCAAGAGAGGCCAGTGCGTTGT
GTTTGGTCTAAGTTTGNNNNNNNNNN---------------TTTGTCCTTTTACATCACCGGTTCAAAGAAAGTGGTCTG
GAGGGGCGGCTAGAGATGCTCTTATATTAGACAAACATGTAGTACCTTCATCAGCAGTAGGTCTTCGGAAGAGTTTTGAC
GTGGTCCTTATTCTTTCTTAGGTTTGGCTACGGCACATCTAAATACATCTAGATATGGTACGTCTAGATGTGCTGTTCTT
TTTGTAGCTGGGAGGGATCCAGCTTGGATCACCACCAACACCAGGTGCACTGTTTTTACAGAGACTATTAAGAGAACTTA
GCGA----TTCCCAAATTTTAAAAACCTGCTGTGGAAGACAAAAGTGTA-----CATCGGCGACTAG------CTAGAAG
CCTTTCTTCGACGCGGCTGGGCCAATAAACTGAATAAAGTATACCACACCAGTCTCCACGGAACAACGACGGGAGGTAGC
AGTACAGCAGACGACTTGCGTGGCACACTCGCGTTATGTGTGCGC-----------GAGACCGGACTGGTCAAAGGTTTG
AGCAAGAGGGGCCTTCCAAGCCA---------------------GCCAGCCGCCGGAGAAACTCGCAAGGCCTCCGCCAC
TTATAAACGCGGAGGAGGAGCAGCGGCAAGAAACAAACGGCCCGGTGCAGACAGCCACCAAACCAGAGGGGAAGAAAAAA
GAGGCCCTCGTTCGCCTAACTCCATTAGCCCATAGCCATGCCTCTCTTGATATGCCACCGG---CTGCTGCTGCTTCTCC
TCCTCTGG---GTCGCCGCCTCCCATGGCGATTCATCCGATGATGGGGCTTACGACCCCTCCATGTGCCTGAATCAAACT
TACACATGCGGGGACGTGAGGATCAGCTACCCGTTCTATCTCGTCGGGAAGACAAAAGATCTCAGGGGCAACGACAACTC
CTACTGCGGCTACCCTGGCCTGGGGATCCTCTGCGACGACAACAAGCCCATCCTGCAGCTCAACGGCACCGCC---AACT
ACACGGTCAAGGGCATCGACGGCGCGCTCGCAACCGTCTCTCTAGCCGACCCGAACGTCGACGACGACCTCAACCCCTGC
CCGAGACCAAGAATCGGCCGCAACGTCACTTTTCAAGAGGGATCGCCGCTGTACTTTCCTGACAGCACGGTCGATTACCT
TATCTTCTTCATCGGCTGCAACTTCAACTTTACCTTCTACAAACCGAGTAGCATCTACCCGATCAGCTGCCAAAGCTTTG
AAGATGGTCCTGGTCCTG-GGCTATCGTTCGTGCTTCCGGATGATGCAGTGCCCGCCGGCAACTGGGTGCAAGCGTGCAA
CCAAGTCATACAATTGCCTGTGCACAAATACGGCGAGATCAACTTTACTGACCATGGATGGACAAACGGGAGTGGATATG
CCAATCTTCTTCGTCAGGAATTCCAGCTGGGATGGAACGAGAGCGGGAGGCCCACTGCATGTACCCAGTGCGAGGGAGCC
AATTCCAAGGGACGGTGCGGTCACAGTCGGACCGGGGATTTCATAGGCTGCTTGTGCCCTGACGGCCTAGTACACTCCGA
TAATACTTGCAGTAAATCCCGTAAGTTCTCTGAATCTGAAGCTTTTCCTTTGCAGAAGTTGC------------------
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>chr3D_145
AGCCATGCCTCTCTTGCTAAGCCACCACCACCAGCTGCTGCTGCTTCTCCTCTTGGTTGCCGTTACCGCCTCCCATGGCG
ATTCATCTGATGATGATACTTACAACCCATCCATGTGTCTGCCTCAAACTTACACCTGCGGGGACGTGAGGATCAGCTAC
CCGTTCTATCTCGCCGGGGAGACAAAAGATGTCAAGGGCAACGCCAACTCGTACTGCGGCTACCCTGGCCTGAGGATCCT
CTGCAACGACGACAAACCCATCCTGCAGCTCAACGGCACCGCCAACTACACGGTGAAGAGCATCGACGGCGCGCTCGCAA
CCGTCTCTCTAGCCGA---------------------------------------------------CCCAGCGGTGGAC
GACGCCCGCAACACCTGCCCAAGACCAAGAATCGACCGCAACATCACTTTGCAAGAGGGATCGCTGCTGTACTTTCCTGA
CAGCACGG------------------------------------------------------------------------
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---TCGATTACCTTGTCTTCTTCATCGGCTGCGCCTTCAACTCTACCTTCCACCAACCGAGTTACATCCGCCCGATCAGC
TGCGAAAGCTTTGACGATGGTCCTGGTCCTGGGCTATCGTTCGTGCTTCCCGATGATGCAGTGCCCGCCGGCAACTGGGT
GCAGGCGTGCAGCCAAGTCATACAATTGCCTGTGCACAAATACGGCGAGATCAACCTTACTGACCCTGGATGGACAAACG
GGAGTGGATATGCCAGT---------------------------------------------------------------
-GTTCTTCGTCAGGAATTCCAGCTGGGATGGAACGAGAGCGCGAAGGACCCGGCATGTATCCAGTGCGAGGGCC------
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----------------------------GCTTGCCCGTTGCAAACGCCAACCTGATTTAATCGGAAATTCAT------TT
CAGTTTCAGTGTCAGGGGCGCTTGTGCCTGAAAAACGAACGAAACCAAGAGCGCGTCCGTCCGTTTCGAAAAAAGAATAG
CGCGTGAGGTAGGGCAGAAGCGTTAATATTCGTT----CCCATTTCGTCAGTCGTCAGTCGACAAGGATGGTTCCCGACC
TTTTCCACACCCATTGTTCCCTACTTT----------------GC----------------TCGTGACTGTGGG----GT
TCATTACCATCAGGCGAACCGCTGCCTCGCGTTCGAGAAGCTCTAAGAGCTTCTCTTTCTTCCTTTCTTCTCTGAGTTTC
CGGGGCTGTACAAACACACACCTACATCCT--------------------------------------------------
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------------------------------------------------------CAGTAGGTCTTCGGAAGAGAGTTGAC
GGGGTCCTAATTCTTTCTTTCTGTGGCC----------------------------------------------------
-------------GGGATCCAGCTTGGATTACCACCAACACCAACTGAACTGTTTTTACAGAGACCATTAAGAGAACTTA
TCAA----TTCCTAAA--TTAAAAGCTTGCTGTGGAAGACAAAAGTAAA-----TATCGGCGCCCGACTAGAAGCCT---
--TTTCTTCCACGCGCCTGGGCG---------------------------AGTCTCCACGGAACAGCGACGGGAGGTACT
AGTACAACAGACGACTTCCGTGGCACACTCTCGTTACGTACGTATGCGCGACACCGGAGACCGGACTGGTCAAAGGTT-G
AGCAAGAGGGGCTTCCCGGCATGTCCCTCTCATCGGCCTGCCATGCCAGTCGCCGGAGAAACTCGCAAGGCCTCCGCCAC
TTATAAACGCAGAGGAGGAGCAGCGGCAAGAAACAAACGGCCCGGTGCAGACAGCCACCAAACCAGAGAGG-AGAAAAAG
GAGACCCTCGCTCGCCTAACTCCATTAGCCGATAGCCATGCCCCTCTTGATATGCCACCGG---CTGCTGCTGCTTCTCC
TCTTCTGG---GTCGCCGCCTCCCATGGCGATTCATCTGATGATGGGGCTTACGACCCCTCCATGTGCCTGAATCAAACT
TACACCTGCGGAGAGGTGAGGATCAGCTACCCGTTCTATCTCGCCGGGGAGACCAAAGATCTCAAGGGCAACGCCAACTC
CTACTGCGGATACCCTGGCCTGGGGATCCTCTGCGACGACGACAAGCCCATCCTGCAGCTCGACGGCATCGTC---AACT
ACACCGTCAAGAGCGTCGACGGCGCAACCGCGACCGTCTCTCTAGCCGACCCGAACGTCGACGACGACCGCAACACCTGC
CCGAGACCAAGAATCGATCACAACATCACTTTGCAAAAGGGATCGCTGCTGTACTTTCCTGACAGCGCGGTCGATTACCT
TATCTTCTTCATCGACTGCATCTTCAACTCTACCTTCCACCAACCGAATAGCATCTACCCGATCAGCTGCAAAGGCTTTG
ATGCTGGTCCTCGTCCTG-GACTATCCTTCGTGCTTCCGGATGATGCAGTGCCCGCCGGCAACTGGGTGCAAGCGTGCAA
CCAAGTCATACAATTGCCTGTGCACAAATACGGCGAGATCAACCTTACTGACCCTGGATGGACAAACGGGAGTGGATATG
CCAGTGTTCTTCGTCAGGAATTCCAGCTGGGATGGAACGACAGCGGGAAGCCCCCGGCATGTATCCAGTGCGAGGGGTCC
AATTCCAAGGGACGGTGCGGTCACAGTCGGACCGGCGATTTCATCGGCTGCTTGTGCCCTGACGGCCTAGTACACTCCGA
TAATACTTGCAATAAATCCCGTAAGTTCTCTGAATCTGAAGCTTTTCCTTTGCAGAAGTTGCGTTTTTCTAGCTGCTGTG
TAGCTGCCCTGTAGTTGTATCTCGGGCACTCGGTGCTTTCTTTCCACTTACGGACAAATCCTTAATTTCATCAT-CTCTT
GGAGAAATACCTCACACACATGCTTTCTCACCAAGTAGAGGGTCGAGTGCAGAGCCTAAACATTTCTTATCACTGTAAAC
AAAGCCTATCAGACCACCATAAATCTAAGCCTTCAGTTTTGTCAGTTTGACTTCCAGGTGTGAGAGAGCCTGCAAACTTC
TTTTTTTTTTGGCGGGAGCGAGAGAGCCCGCAACTTATACCGACTTGTTGCATATAAATGTCAAGG---------TTTTT
TTCCTGTGGCATGGTAATCGTTCAGGTTAATAGTACATGAGCGGAAGCCCAGCCAATTCTAACTCGTAGGCGAGACCAAT
TCCCGCCCCGATTTGGACGTGATTGCTTCATGTGAAGTACTGTAAACGCGTTCTGTTTTACTCTTCTTGTATCTGGTGGG
GAACACATTTCTATTACTCGAATGACAAATA----------------------------------GGATTGTGCACATGT
TTTCCACAGGTGTTGTCGAAAAATTAGACGCCAGCTTAACCATTCCGCGGACATTCCTTTGTTTTTCTTTTCGGATATGC
AATTTCTTAGCCGTTGCTGAAATTTGTCTTGGTCCACCGAGGACCATTTTTTTTTTCCGACCGAGTCGTTGACCAACTAG
AATGCTGAGAAATCCATGCCACGGCACTAGAGAGCGCGCCCACAACGGGAGGAAGCCAGACACCTCCACAGTATCTCCAC
CTTCTTCGTCTCATCCAGTTCCGACTTTAGCGGTGATGATACATCTGGTTGCAGGGCCATGCGGCTCTAGGACTGGATGC
GACCCGTGGGCACGTCGCGAGTGGTGGGGTATGAAGAGAAAGTAAGGGGAGGGGCTTCACTGAGGATGTTGAACAGGAGC
AGGGGCTCCCCGGTGAAGGTGTGAGAGAGAGGAGGAGAAGGAGTTGCGACCAGTGGCAGAGC------------------
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>chr3A_237
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-------------------------------------AACGAAACCGAGAGTGCGTCCGTCGGTTTCGAAAACAGAATAG
CGCGTGAGAAGC------------AGTAATATTTGCTCGCCATTTCGTCAGTG-------GACAAGGACGGTTCCCAACC
TTTTCCACGCCCCTTGTTCCCTACCATGTATCGAAACGCGCCAGC----------------TCGTGACTGCGGG----GT
TCATTATCATCAGGCGGACCGCTGCCTCCTGTGGAGCTTTTCTTCT------T----------TTTCTTCTCTGAGTTTC
CCGGGTTAAAGCATCTCGAGCCGTTGGAGCCCCCAGGACAATCGCCGGACCAAAAATAGCACGTCATAAGAGGCAAAATA
TTTTCGCCGGATGAAATGCGAGTACGTTTTTCCAGTCGTTGGTGCCCCCAAGACAATCGTCGGGCAAAAAGTGATTAGGT
GGGTCAGAAAAAAGGAGGAGTGGGGGAATAGGATTGGTTGTTACTTCCGTCGGCGCCCTCAAGAGAGGCCAGTGCGTTGT
GTTTGGTCTAAGTTTGCCGGCGCTAATTTGANNNNNNNNNNTTTGTCCTTTTACATCACCGGTTCAAAGAAAGTGGTCTG
GAGGGGCGGCTAGAGATGCTCTTATATTAGACAAACATGTAGTACCTTCATCAGCAGTAGGTCTTCGGAAGAGTTTTGAC
GTGGTCCTTATTCTTTCTTAGGTTTGGCTACGGCACATCTAAATACATCTAGATATGGTACGTCTAGATGTGCTGTTCTT
TTTGTAGCTGGGAGGGATCCAGCTTGGATCACCACCAACACCAGGTGCACTGTTTTTACAGAGACTATTAAGAGAACTTA
GCGA----TTCCCAAATTTTAAAAACCTGCTGTGGAAGACAAAAGTGTA-----CATCGGCGACTAG------CTAGAAG
CCTTTCTTCGACGCGGCTGGGCCAATAAACTGAATAAAGTATACCACACCAGTCTCCACGGAACAACGACGGGAGGTAGC
AGTACAGCAGACGACTTGCGTGGCACACTCGCGTTATGTGTGCGC-----------GAGACCGGACTGGTCAAAGGTTTG
AGCAAGAGGGGCCTTCCAAGCCA---------------------GCCAGCCGCCGGAGAAACTCGCAAGGCCTCCGCCAC
TTATAAACGCGGAGGAGGAGCAGCGGCAAGAAACAAACGGCCCGGTGCAGACAGCCACCAAACCAGAGGGGAAGAAAAAA
GAGGCCCTCGTTCGCCTAACTCCATTAGCCCATAGCCATGCCTCTCTTGATATGCCACCGG---CTGCTGCTGCTTCTCC
TCCTCTGG---GTCGCCGCCTCCCATGGCGATTCATCCGATGATGGGGCTTACGACCCCTCCATGTGCCTGAATCAAACT
TACACATGCGGGGACGTGAGGATCAGCTACCCGTTCTATCTCGTCGGGAAGACAAAAGATCTCAGGGGCAACGACAACTC
CTACTGCGGCTACCCTGGCCTGGGGATCCTCTGCGACGACAACAAGCCCATCCTGCAGCTCAACGGCACCGCC---AACT
ACACGGTCAAGGGCATCGACGGCGCGCTCGCAACCGTCTCTCTAGCCGACCCGAACGTCGACGACGACCTCAACCCCTGC
CCGAGACCAAGAATCGGCCGCAACGTCACTTTTCAAGAGGGATCGCCGCTGTACTTTCCTGACAGCACGGTCGATTACCT
TATCTTCTTCATCGGCTGCAACTTCAACTTTACCTTCTACAAACCGAGTAGCATCTACCCGATCAGCTGCCAAAGCTTTG
AAGATGGTCCTGGTCCTG-GGCTATCGTTCGTGCTTCCGGATGATGCAGTGCCCGCCGGCAACTGGGTGCAAGCGTGCAA
CCAAGTCATACAATTGCCTGTGCACAAATACGGCGAGATCAACTTTACTGACCATGGATGGACAAACGGGAGTGGATATG
CCAATCTTCTTCGTCAGGAATTCCAGCTGGGATGGAACGAGAGCGCAAAGGACCCGGCATGTATCCAGTGCGAGGGATCC
AATTCCAAGGGACAGTGCGGTTACAGTCGGACCGGCGATTTCATCGGCTGCTTGTGCCCTGACGGCCTAGTACACTCCGA
TAATACTTGCAGTAAATCCCGTAAGTTCTCTGAATCTGAAGCTTTTCCTTTGTAGAAGTTGCGTTTTTCTAGGTGCTGTG
-----------------------------------CTTTCTTTCCATTAACGGACAAATCCTTAATTTCATCGT-CTCTT
GGAGAAATACCTCACACACATACTTTCTCACCAAGTAGAGGGTCGAGTGCAGAGCCTAAACATTTCTTATCGCTGTAAAC
AAAGCCTGTCAGACCAC-ATAAATCTAAGCCTTCAGTTTCGTCAGTTTGACTTCCAGGTGTGAGAGAGCCTGCAAC---C
TTTTTCTTTTGGATGGGGCGAGAGAGCCTGCAACTTACACCAACTTGTTGCATATAAATGTCGAGT---------TTTTT
TTCCTGTGGCATGGTAATCGTTCAGGTTAATAGTACATGAGCGGAAGCCCAGCCAATTCTAACTCGTAGGCGAGACCAAA
TCCCACCCCAATTTGGATGTCATTGCTTCATGTGAAGTACTGCAAACGCGTTCTGTTTTACTCTTCTTGTATCTGGCGAG
GAACACATTTCTATTACTCGAATGACGAATA----------------------------------GGA------------
--------------------AAATTAGACGCCAGCTTAACCATTCCGCGGACATTCCTTTGTTTTTTTTTTCGGATATGC
AATTTCTTAGCCATTGCTGAAATTTGTCTTGGTCCACGGAGGACTTTTTTTTTTCTCCAACCAAGTCGTTGACCAACTAG
AATCCTGAGAAATCCATGCCGCGGCACCAGAGAGCGCGCCCACAGCGGGAGGAAGCCAGACACCTCCGCAATATCTCCAT
CTTCTCCGTCTCATCCAGTTCTGACTTTAGCGGTGATGATACATCTGGTTGCAGGGCCATGCGGCTCTAGGACTGGATGC
GACGGGTGGGCACGTCGCGGGTGGTGAGGTATGAGGAGAAAGTGAGG---GGGGCTTCAATGAGGAGGTTGAACAGGAGC
AGGGGCTCCTCGATGACGGCGTGGGAGAGAGGAGGAGAAGGAGTTGCGACCAGTGGCAGAGCTTCATGAGGG--------
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>chr3B_1000
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------------------------------------CATGCCTCTCTTGCTAAGCCACCACCACCTGCTGCTGCTTCTCC
TCTTGGTTGCCGTTGCCGCCTCCCATGGCGATTCATCTGATGATGGTGCTTACGACACCTCCATGTGCCTGAATCAAAAT
TACACCTGCGGAGGCGTGAACATCACCTACCCGTTCTATCTCGCCGGGGAGACAAAAGATGTCAAGGGCAACGCCAACTC
CTACTGCGGCTACCCTGGCCTGGGGATCCTCTGCGACGACGAGAAGCCCATCCTGCAGCTCAACGGCGCCGCC---AACT
ACACGGTGACGAGCTTCGACGACGCGCTCGCAACGCTCTCTCTAGCCGATCCGGAAGTCGAAGACG---GCAAGCCCTGC
CCGAGACCAAGAATCAACCGCAACATCACTTTTCAAGAGGGATCGCTGCTGTTCTTTCCTGACAGCGCGGTCGATTACCT
TATCTTCTTCATCGGCTGCAACTTCAACTTTACCTTCTACAAACCGAGTAGCATCTACCCGATCAGCTGCGAAAGCTTTG
ACGATGGTCCTGGTCCTG-GGCTATCGTTTGTGCTTCCGGATGATGCAGTGCCCGCCGGCAACTGGGTGCAAGCGTGCAA
CCAAGTCATACAATTGCCTGTGCACAAATACGGCGAGATCAACCTTACTGACCCTGGATGGACAAACGGGAGTAGATATG
CCAGTGTTCTTCGTCAGGAATTCCAGCTGGGATGGAACGAGAGCGCGAAGCCCCCAGCATGTACCCAGTGCGAGGGATCC
AATTCCAGGGCAAGGTGTGGTCACAGCCGGACCGGGGATTTCATCGGCTGCTTGTGCCCTGACGGCCGAGTACACTCCGA
TAATAATTGCAATAAAGCCCGTAAGTTCTTTGAATATGAAGCTTTCTCTTT-----------------------------
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>chr3D_1024
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------------------------------------------------------------G---CTGCTGCTGCTTCTCC
TCTTGGTTGCCGTTGCCGCTTCCCATGGCGATTCGTC---TGATGGTGCCTACGACCCCTCCATGTGCCTGAATCAAGCT
TACACATGCGGAGGGATGAGCATCAGCTACCCGTTCTATCTCTCCGAGGAGACAAGAGATCTCAAGGGCAACGCCAACTC
CTACTGCGGCTACCCTGGCTTGGGGATCCTCTGCAAAGACGACAAGCCCATGCTGCAGCTCAACGGCGAAGCGGAAAACT
ACACGGTGAAGAGCATCGACGGCGCGAGTGCAACCGTCTCTCTAGCCGACCCGGAGGTCGTCGGCA---GCAGCT-----
----GCCCAAGAGTCGATCACAACGTGACCATCCCACCGGGCTCATGGTTGGAATTTCTTGACAGCACCGTCGACTGCCT
CTTCTTCTATCTCGGTTGCTACTTCAACTCTACCTTCTTCCAACCGCCTGGCATCGGCCAGATCACCTGCCAAGGTTTTG
CCAGCGGTTACCCCTCTGCGGTTATCGTTCGTGATCCCGGATGATAAAGTGCCCCCTGGGAACTGGTCGCAGGCGTGCGA
GCAAATCTTCAAAGTTCCTGTGCTCAAA----------------------------------------------------
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>SNPs
SS-SSSSSSSS-SSSSSSS-S-S-SS-SS-SSSSSSSSSSSSS-S-S-SSSSSSSS-SSSSSS--SS--SSSSSS-S-SS
SS--SS-SSS-SS-S-S--SSS-S-SSSSSSSSSSSS-SSSSS--S-SS-S-SSS-SSS-S-SSSSS-SS----------
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-------------------------------------------------S---------------------------S--
----------S------------------------------------------------S--S-----------------
------S---------------S----------S-S--------------------------------------------
-------------S-------------------------------SSSSSSSSSSSSSSSS--S----------SSSS--
--------------------------------------------SSSS-SSS-----------------------S----
--------S-----SSSSSS------------------------------------------------------------
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---------------------------------------------------------S--------S----------S--
---S-----S----------------------------------------------------------------------
---------S-----S------------------------------------------------------------S---
----SSSS----------------------S----S-------------SSSSS--------------------------
-------------------S-----------------------------S------------------------------
--------------------------S-----------------S-------------S---------------------
-------------------------------------------------------------------------S-S----
---------S--SS-S---------S-------------S---S-----S---------------SS---S-S-S-----
-S-----------------------------------------------------------------------S------
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----------------------------------------------------------------S---S-----------
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-----------------------------------------------------------------------------S--
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--------------------------------S-----------------------------------------------
----------------------------------------------------------------S--------SSSSSSS
SSS-----SS-SSS-SSS-SSSSSSSS-SSSSSSS---------------------------------SSS-SSS-----
----------------------------------S-----------------S---------------------------
--------------------------------------S-----------------------------------------
S-----------------------------------------------SSSS-SSS-SSSS-S--SSSSSSSSSS-----
------------------S----S--------S-------S----------------------------S----------
------S----------------------------------------S------S-------------------------
---------------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
---------------------------------S--------------------S-------------S----------S
-------------S---------------------------------------S------------S----S--------
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------------------------------------------------------S-------------------------
------------------S-------------------------------S-------------------S--------S
----------------S---S----------------------------------S----------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_2215
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-----------------------------------CCTACTTTGCATCGAAGCGC-------------------------
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>reverse_4757
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------------------------------------TTGTGCGCATGTTTTCCACG------------------------
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