AutoCloner

Multiple sequence alignment - TraesCS3B01G281900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G281900	chr3B	100.000	2351	0	0	1	2351	452547555	452549905	0.000000e+00	4342.0
1	TraesCS3B01G281900	chr4B	97.320	1082	25	4	15	1093	24852151	24851071	0.000000e+00	1834.0
2	TraesCS3B01G281900	chr4B	89.248	1330	87	21	733	2032	25269655	25270958	0.000000e+00	1613.0
3	TraesCS3B01G281900	chr4B	83.134	919	106	35	180	1088	26047380	26046501	0.000000e+00	793.0
4	TraesCS3B01G281900	chr4B	83.025	919	107	33	180	1088	26308618	26307739	0.000000e+00	787.0
5	TraesCS3B01G281900	chr4B	82.916	919	108	33	180	1088	26096663	26095784	0.000000e+00	782.0
6	TraesCS3B01G281900	chr4B	82.916	919	108	33	180	1088	26185294	26184415	0.000000e+00	782.0
7	TraesCS3B01G281900	chr4B	82.807	919	109	36	180	1088	26227191	26226312	0.000000e+00	776.0
8	TraesCS3B01G281900	chr4B	85.637	557	57	10	15	555	25269098	25269647	4.390000e-157	564.0
9	TraesCS3B01G281900	chr4B	98.137	322	4	1	2032	2351	24838577	24838256	5.670000e-156	560.0
10	TraesCS3B01G281900	chr4B	95.000	160	2	1	1091	1250	24838750	24838597	1.800000e-61	246.0
11	TraesCS3B01G281900	chr4B	77.778	351	27	16	2048	2348	25270945	25271294	4.020000e-38	169.0
12	TraesCS3B01G281900	chr4B	90.909	110	5	3	1888	1992	25987456	25987347	2.440000e-30	143.0
13	TraesCS3B01G281900	chr4B	90.909	110	5	3	1888	1992	26027769	26027660	2.440000e-30	143.0
14	TraesCS3B01G281900	chr4B	90.909	110	5	3	1888	1992	26079682	26079573	2.440000e-30	143.0
15	TraesCS3B01G281900	chr4B	90.909	110	5	3	1888	1992	26116058	26115949	2.440000e-30	143.0
16	TraesCS3B01G281900	chr4A	91.165	781	56	7	625	1401	586438171	586437400	0.000000e+00	1048.0
17	TraesCS3B01G281900	chr4A	82.783	848	58	22	1543	2351	586437255	586436457	0.000000e+00	676.0
18	TraesCS3B01G281900	chr4A	85.540	574	55	14	12	567	586438760	586438197	2.030000e-160	575.0
19	TraesCS3B01G281900	chr4A	83.942	411	48	4	993	1401	586426851	586426457	6.130000e-101	377.0
20	TraesCS3B01G281900	chr4A	82.555	407	53	4	994	1398	538169045	538169435	2.240000e-90	342.0
21	TraesCS3B01G281900	chr4A	92.500	80	6	0	2068	2147	586426385	586426306	5.310000e-22	115.0
22	TraesCS3B01G281900	chr4A	100.000	46	0	0	1400	1445	586437382	586437337	4.160000e-13	86.1
23	TraesCS3B01G281900	chr4D	89.413	784	56	11	625	1401	14990052	14990815	0.000000e+00	963.0
24	TraesCS3B01G281900	chr4D	92.687	588	24	8	1447	2034	14990917	14991485	0.000000e+00	830.0
25	TraesCS3B01G281900	chr4D	84.456	579	69	11	9	574	14989471	14990041	3.410000e-153	551.0
26	TraesCS3B01G281900	chr4D	85.194	412	46	1	987	1398	14999536	14999932	2.170000e-110	409.0
27	TraesCS3B01G281900	chr4D	84.084	333	22	6	2046	2351	14991469	14991797	2.290000e-75	292.0
28	TraesCS3B01G281900	chr4D	91.870	123	8	2	1890	2011	15000330	15000451	1.120000e-38	171.0
29	TraesCS3B01G281900	chr4D	100.000	46	0	0	1400	1445	14990833	14990878	4.160000e-13	86.1
30	TraesCS3B01G281900	chr2A	85.398	226	31	2	1813	2038	59732659	59732882	1.400000e-57	233.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G281900	chr3B	452547555	452549905	2350	False	4342.000	4342	100.000	1	2351	1	chr3B.!!$F1	2350
1	TraesCS3B01G281900	chr4B	24851071	24852151	1080	True	1834.000	1834	97.320	15	1093	1	chr4B.!!$R1	1078
2	TraesCS3B01G281900	chr4B	26046501	26047380	879	True	793.000	793	83.134	180	1088	1	chr4B.!!$R4	908
3	TraesCS3B01G281900	chr4B	26307739	26308618	879	True	787.000	787	83.025	180	1088	1	chr4B.!!$R10	908
4	TraesCS3B01G281900	chr4B	25269098	25271294	2196	False	782.000	1613	84.221	15	2348	3	chr4B.!!$F1	2333
5	TraesCS3B01G281900	chr4B	26095784	26096663	879	True	782.000	782	82.916	180	1088	1	chr4B.!!$R6	908
6	TraesCS3B01G281900	chr4B	26184415	26185294	879	True	782.000	782	82.916	180	1088	1	chr4B.!!$R8	908
7	TraesCS3B01G281900	chr4B	26226312	26227191	879	True	776.000	776	82.807	180	1088	1	chr4B.!!$R9	908
8	TraesCS3B01G281900	chr4A	586436457	586438760	2303	True	596.275	1048	89.872	12	2351	4	chr4A.!!$R2	2339
9	TraesCS3B01G281900	chr4A	586426306	586426851	545	True	246.000	377	88.221	993	2147	2	chr4A.!!$R1	1154
10	TraesCS3B01G281900	chr4D	14989471	14991797	2326	False	544.420	963	90.128	9	2351	5	chr4D.!!$F1	2342
11	TraesCS3B01G281900	chr4D	14999536	15000451	915	False	290.000	409	88.532	987	2011	2	chr4D.!!$F2	1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
208	228	3.191371	ACTTTATTTGCTGCGGAAGAAGG	59.809	43.478	0.0	0.0	37.19	3.46	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2162	2292	0.03582	GGTTACTGCCATCCGAACCA	60.036	55.0	0.0	0.0	39.51	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
208	228	3.191371	ACTTTATTTGCTGCGGAAGAAGG	59.809	43.478	0.00	0.00	37.19	3.46
290	310	3.266772	TCCATTTCCTGCTTGTGGTATCT	59.733	43.478	0.00	0.00	0.00	1.98
467	490	7.807907	GGAGTATGTCAACTTGTTTAAATGGTG	59.192	37.037	0.00	0.00	0.00	4.17
547	574	5.659971	GGGACCAACCAACTAGTCTCTTATA	59.340	44.000	0.00	0.00	41.20	0.98
579	616	8.560355	TTAACAATGTTATGCTGTGTCTGTAT	57.440	30.769	6.67	0.00	0.00	2.29
585	622	8.873215	ATGTTATGCTGTGTCTGTATTACTAC	57.127	34.615	0.00	0.00	0.00	2.73
646	683	5.003160	ACAGTAACTTTCATGCTGCATACA	58.997	37.500	15.78	1.85	34.33	2.29
793	832	5.245531	ACATGCTTTCCTTCGATTCAACTA	58.754	37.500	0.00	0.00	0.00	2.24
796	835	5.305585	TGCTTTCCTTCGATTCAACTAACT	58.694	37.500	0.00	0.00	0.00	2.24
881	920	7.116519	GGAGTTAGAATCTGAAACATATACCGC	59.883	40.741	0.00	0.00	0.00	5.68
1185	1234	3.823330	ATGGAGTCGACGCGGGAC	61.823	66.667	20.65	20.65	34.62	4.46
1524	1636	0.810823	GGGTTTTCCGACACGTGTCA	60.811	55.000	39.14	23.91	44.99	3.58
1526	1638	1.000884	GTTTTCCGACACGTGTCACA	58.999	50.000	39.14	26.09	44.99	3.58
1591	1703	4.877378	ACTGTTACTTGGGAATCACGTA	57.123	40.909	0.00	0.00	0.00	3.57
1592	1704	5.416271	ACTGTTACTTGGGAATCACGTAT	57.584	39.130	0.00	0.00	31.49	3.06
1593	1705	5.801380	ACTGTTACTTGGGAATCACGTATT	58.199	37.500	0.00	0.00	31.49	1.89
1594	1706	6.938507	ACTGTTACTTGGGAATCACGTATTA	58.061	36.000	0.00	0.00	31.49	0.98
1595	1707	7.388437	ACTGTTACTTGGGAATCACGTATTAA	58.612	34.615	0.00	0.00	31.49	1.40
1596	1708	7.332678	ACTGTTACTTGGGAATCACGTATTAAC	59.667	37.037	0.00	0.00	31.49	2.01
1684	1801	1.226746	GAAACTTGACCACCACGGAG	58.773	55.000	0.00	0.00	38.63	4.63
1728	1845	5.130145	AGCTAGCACTCACAAGGAAAGATAT	59.870	40.000	18.83	0.00	0.00	1.63
1729	1846	6.325028	AGCTAGCACTCACAAGGAAAGATATA	59.675	38.462	18.83	0.00	0.00	0.86
1730	1847	6.422400	GCTAGCACTCACAAGGAAAGATATAC	59.578	42.308	10.63	0.00	0.00	1.47
1731	1848	5.352284	AGCACTCACAAGGAAAGATATACG	58.648	41.667	0.00	0.00	0.00	3.06
1732	1849	5.105310	AGCACTCACAAGGAAAGATATACGT	60.105	40.000	0.00	0.00	0.00	3.57
1772	1890	1.841663	CGGCCAGTCCAAGAAACGTG	61.842	60.000	2.24	0.00	34.01	4.49
1785	1903	6.374894	TCCAAGAAACGTGAAACTTCCTTTTA	59.625	34.615	0.00	0.00	31.75	1.52
1862	1980	2.391389	CCGCGGAGGAAGTCAAAGC	61.391	63.158	24.07	0.00	45.00	3.51
1885	2003	1.451387	GGATCACCGGCGGTTTGAT	60.451	57.895	32.12	28.66	31.02	2.57
1956	2074	2.037772	TGCTCCTGTTCTTCTCTTGGAC	59.962	50.000	0.00	0.00	0.00	4.02
1979	2097	1.067516	TGTTCTTGCTCTGCTTTTGGC	59.932	47.619	0.00	0.00	42.22	4.52
1991	2109	1.264826	GCTTTTGGCCATGCTTGTTTG	59.735	47.619	6.09	0.00	34.27	2.93
2035	2153	3.912496	TGGAGACAGAGAGAGAGAGAG	57.088	52.381	0.00	0.00	35.01	3.20
2036	2154	3.449918	TGGAGACAGAGAGAGAGAGAGA	58.550	50.000	0.00	0.00	35.01	3.10
2037	2155	3.452264	TGGAGACAGAGAGAGAGAGAGAG	59.548	52.174	0.00	0.00	35.01	3.20
2038	2156	3.706594	GGAGACAGAGAGAGAGAGAGAGA	59.293	52.174	0.00	0.00	0.00	3.10
2039	2157	4.202202	GGAGACAGAGAGAGAGAGAGAGAG	60.202	54.167	0.00	0.00	0.00	3.20
2040	2158	4.614475	AGACAGAGAGAGAGAGAGAGAGA	58.386	47.826	0.00	0.00	0.00	3.10
2041	2159	4.648762	AGACAGAGAGAGAGAGAGAGAGAG	59.351	50.000	0.00	0.00	0.00	3.20
2042	2160	4.614475	ACAGAGAGAGAGAGAGAGAGAGA	58.386	47.826	0.00	0.00	0.00	3.10
2043	2161	4.648762	ACAGAGAGAGAGAGAGAGAGAGAG	59.351	50.000	0.00	0.00	0.00	3.20
2044	2162	4.892345	CAGAGAGAGAGAGAGAGAGAGAGA	59.108	50.000	0.00	0.00	0.00	3.10
2045	2163	5.009911	CAGAGAGAGAGAGAGAGAGAGAGAG	59.990	52.000	0.00	0.00	0.00	3.20
2046	2164	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
2047	2165	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
2048	2166	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
2049	2167	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
2050	2168	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
2051	2169	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
2052	2170	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
2053	2171	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
2054	2172	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
2055	2173	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
2056	2174	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
2057	2175	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
2131	2249	3.842732	TTCAATCAGCATCTGCACTTG	57.157	42.857	4.79	5.24	45.16	3.16
2201	2331	1.131504	CCTCGAAACTCGTCTCTCAGG	59.868	57.143	0.00	0.00	41.35	3.86
2205	2350	0.318762	AAACTCGTCTCTCAGGCCAC	59.681	55.000	5.01	0.00	0.00	5.01
2208	2353	0.172352	CTCGTCTCTCAGGCCACTTC	59.828	60.000	5.01	0.00	0.00	3.01
2233	2382	6.517605	GGTTGTCTTATGATCTTAGTCCTCC	58.482	44.000	0.00	0.00	0.00	4.30
2272	2441	1.000717	GTTGGTTTAGTTGTGCCGCAT	60.001	47.619	0.00	0.00	0.00	4.73
2303	2472	4.707448	TCTTTTAGCTTGGTTGGTCACAAA	59.293	37.500	0.00	0.00	38.54	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	3.481453	GAAAACCCTGGATATGGAGCTC	58.519	50.000	4.71	4.71	0.00	4.09
2	3	2.175715	GGAAAACCCTGGATATGGAGCT	59.824	50.000	0.00	0.00	0.00	4.09
3	4	2.175715	AGGAAAACCCTGGATATGGAGC	59.824	50.000	0.00	0.00	45.61	4.70
4	5	4.660771	ACTAGGAAAACCCTGGATATGGAG	59.339	45.833	0.00	0.00	45.62	3.86
5	6	4.641868	ACTAGGAAAACCCTGGATATGGA	58.358	43.478	0.00	0.00	45.62	3.41
6	7	5.104109	TGAACTAGGAAAACCCTGGATATGG	60.104	44.000	0.00	0.00	45.62	2.74
7	8	6.001449	TGAACTAGGAAAACCCTGGATATG	57.999	41.667	0.00	0.00	45.62	1.78
8	9	5.731678	ACTGAACTAGGAAAACCCTGGATAT	59.268	40.000	0.00	0.00	45.62	1.63
9	10	5.098663	ACTGAACTAGGAAAACCCTGGATA	58.901	41.667	0.00	0.00	45.62	2.59
10	11	3.916989	ACTGAACTAGGAAAACCCTGGAT	59.083	43.478	0.00	0.00	45.62	3.41
136	147	9.762933	TGCTTTAATCAAGAAGTATTTTGCTTT	57.237	25.926	0.00	0.00	33.80	3.51
269	289	3.624777	AGATACCACAAGCAGGAAATGG	58.375	45.455	0.00	0.00	36.46	3.16
290	310	5.290493	TGAGACTTGCAGAACTTCCTAAA	57.710	39.130	0.00	0.00	0.00	1.85
467	490	2.225068	TATTCAAGACTAGCCGCAGC	57.775	50.000	0.00	0.00	40.32	5.25
547	574	7.445402	ACACAGCATAACATTGTTAAAGAGTCT	59.555	33.333	12.96	0.00	0.00	3.24
585	622	9.425893	CATAAGAATTTTTAGTCAGCACATACG	57.574	33.333	0.00	0.00	0.00	3.06
793	832	6.799512	GCATCCAAGTTTGATGCTTATAGTT	58.200	36.000	26.62	0.00	45.71	2.24
843	882	7.016957	TCAGATTCTAACTCCAGGATTGCATAT	59.983	37.037	0.00	0.00	0.00	1.78
1384	1433	0.321298	TCAAGGACTAAACAGCCGGC	60.321	55.000	21.89	21.89	0.00	6.13
1524	1636	5.935789	CCAAAAGATGCAATTTCATTCCTGT	59.064	36.000	0.00	0.00	0.00	4.00
1526	1638	6.363167	TCCAAAAGATGCAATTTCATTCCT	57.637	33.333	0.00	0.00	0.00	3.36
1591	1703	4.320870	ACTTGGAATCCAACGACGTTAAT	58.679	39.130	13.77	7.40	38.75	1.40
1592	1704	3.731089	ACTTGGAATCCAACGACGTTAA	58.269	40.909	13.77	5.17	38.75	2.01
1593	1705	3.006110	AGACTTGGAATCCAACGACGTTA	59.994	43.478	13.77	0.00	38.75	3.18
1594	1706	2.140717	GACTTGGAATCCAACGACGTT	58.859	47.619	11.23	7.57	38.75	3.99
1595	1707	1.343465	AGACTTGGAATCCAACGACGT	59.657	47.619	11.23	7.49	38.75	4.34
1596	1708	2.080286	AGACTTGGAATCCAACGACG	57.920	50.000	11.23	4.00	38.75	5.12
1597	1709	3.399330	TCAAGACTTGGAATCCAACGAC	58.601	45.455	11.23	7.99	38.75	4.34
1598	1710	3.323691	TCTCAAGACTTGGAATCCAACGA	59.676	43.478	11.23	2.42	38.75	3.85
1599	1711	3.433615	GTCTCAAGACTTGGAATCCAACG	59.566	47.826	11.23	9.90	37.97	4.10
1684	1801	6.210287	AGCTGACTGTACTCCTTATGTTAC	57.790	41.667	0.00	0.00	0.00	2.50
1728	1845	6.093082	GCTGCTTTTCCCTTCTTTAATACGTA	59.907	38.462	0.00	0.00	0.00	3.57
1729	1846	5.106277	GCTGCTTTTCCCTTCTTTAATACGT	60.106	40.000	0.00	0.00	0.00	3.57
1730	1847	5.332707	GCTGCTTTTCCCTTCTTTAATACG	58.667	41.667	0.00	0.00	0.00	3.06
1731	1848	5.332707	CGCTGCTTTTCCCTTCTTTAATAC	58.667	41.667	0.00	0.00	0.00	1.89
1732	1849	4.398044	CCGCTGCTTTTCCCTTCTTTAATA	59.602	41.667	0.00	0.00	0.00	0.98
1772	1890	7.826690	TGCACCATTAGATAAAAGGAAGTTTC	58.173	34.615	0.00	0.00	0.00	2.78
1785	1903	3.118149	TGTGAGCTGATGCACCATTAGAT	60.118	43.478	0.00	0.00	42.74	1.98
1862	1980	4.891727	CCGCCGGTGATCCTTCCG	62.892	72.222	18.79	12.18	45.42	4.30
1885	2003	4.339530	CCTGTAGGATGAAGATGAACTCGA	59.660	45.833	0.00	0.00	37.39	4.04
1956	2074	0.947244	AAAGCAGAGCAAGAACACCG	59.053	50.000	0.00	0.00	0.00	4.94
1979	2097	3.495377	CACCAAATGACAAACAAGCATGG	59.505	43.478	0.00	0.00	0.00	3.66
1991	2109	2.288334	TGCTGCATCAACACCAAATGAC	60.288	45.455	0.00	0.00	0.00	3.06
2034	2152	5.103728	TCTCTCTCTCTCTCTCTCTCTCTCT	60.104	48.000	0.00	0.00	0.00	3.10
2035	2153	5.136828	TCTCTCTCTCTCTCTCTCTCTCTC	58.863	50.000	0.00	0.00	0.00	3.20
2036	2154	5.103728	TCTCTCTCTCTCTCTCTCTCTCTCT	60.104	48.000	0.00	0.00	0.00	3.10
2037	2155	5.136828	TCTCTCTCTCTCTCTCTCTCTCTC	58.863	50.000	0.00	0.00	0.00	3.20
2038	2156	5.136068	TCTCTCTCTCTCTCTCTCTCTCT	57.864	47.826	0.00	0.00	0.00	3.10
2039	2157	4.280677	CCTCTCTCTCTCTCTCTCTCTCTC	59.719	54.167	0.00	0.00	0.00	3.20
2040	2158	4.222336	CCTCTCTCTCTCTCTCTCTCTCT	58.778	52.174	0.00	0.00	0.00	3.10
2041	2159	3.323403	CCCTCTCTCTCTCTCTCTCTCTC	59.677	56.522	0.00	0.00	0.00	3.20
2042	2160	3.312890	CCCTCTCTCTCTCTCTCTCTCT	58.687	54.545	0.00	0.00	0.00	3.10
2043	2161	2.370189	CCCCTCTCTCTCTCTCTCTCTC	59.630	59.091	0.00	0.00	0.00	3.20
2044	2162	2.022035	TCCCCTCTCTCTCTCTCTCTCT	60.022	54.545	0.00	0.00	0.00	3.10
2045	2163	2.370189	CTCCCCTCTCTCTCTCTCTCTC	59.630	59.091	0.00	0.00	0.00	3.20
2046	2164	2.412591	CTCCCCTCTCTCTCTCTCTCT	58.587	57.143	0.00	0.00	0.00	3.10
2047	2165	1.421646	CCTCCCCTCTCTCTCTCTCTC	59.578	61.905	0.00	0.00	0.00	3.20
2048	2166	1.522900	CCTCCCCTCTCTCTCTCTCT	58.477	60.000	0.00	0.00	0.00	3.10
2049	2167	0.178990	GCCTCCCCTCTCTCTCTCTC	60.179	65.000	0.00	0.00	0.00	3.20
2050	2168	0.923729	TGCCTCCCCTCTCTCTCTCT	60.924	60.000	0.00	0.00	0.00	3.10
2051	2169	0.468029	CTGCCTCCCCTCTCTCTCTC	60.468	65.000	0.00	0.00	0.00	3.20
2052	2170	0.923729	TCTGCCTCCCCTCTCTCTCT	60.924	60.000	0.00	0.00	0.00	3.10
2053	2171	0.188342	ATCTGCCTCCCCTCTCTCTC	59.812	60.000	0.00	0.00	0.00	3.20
2054	2172	0.105555	CATCTGCCTCCCCTCTCTCT	60.106	60.000	0.00	0.00	0.00	3.10
2055	2173	1.120795	CCATCTGCCTCCCCTCTCTC	61.121	65.000	0.00	0.00	0.00	3.20
2056	2174	1.074623	CCATCTGCCTCCCCTCTCT	60.075	63.158	0.00	0.00	0.00	3.10
2057	2175	1.074926	TCCATCTGCCTCCCCTCTC	60.075	63.158	0.00	0.00	0.00	3.20
2131	2249	8.084590	TCGAGATTAGAAACAAGAAAAAGGAC	57.915	34.615	0.00	0.00	0.00	3.85
2162	2292	0.035820	GGTTACTGCCATCCGAACCA	60.036	55.000	0.00	0.00	39.51	3.67
2201	2331	2.695359	TCATAAGACAACCGAAGTGGC	58.305	47.619	0.00	0.00	43.94	5.01
2205	2350	6.697892	GGACTAAGATCATAAGACAACCGAAG	59.302	42.308	0.00	0.00	0.00	3.79
2208	2353	6.150396	AGGACTAAGATCATAAGACAACCG	57.850	41.667	0.00	0.00	0.00	4.44
2233	2382	5.519927	ACCAACAAGCAAAAGAGAAAATTCG	59.480	36.000	0.00	0.00	0.00	3.34
2272	2441	4.126520	ACCAAGCTAAAAGATTTGGGGA	57.873	40.909	7.00	0.00	43.38	4.81

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.