Multiple sequence alignment - TraesCS3B01G272600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G272600 chr3B 100.000 2636 0 0 1 2636 438929561 438932196 0.000000e+00 4868.0
1 TraesCS3B01G272600 chr3D 90.078 1794 53 36 497 2239 340069120 340070839 0.000000e+00 2211.0
2 TraesCS3B01G272600 chr3D 89.868 227 12 6 295 520 340068899 340069115 5.550000e-72 281.0
3 TraesCS3B01G272600 chr3D 97.778 45 1 0 261 305 340068838 340068882 7.820000e-11 78.7
4 TraesCS3B01G272600 chr3A 88.268 1432 98 40 261 1657 464797773 464796377 0.000000e+00 1650.0
5 TraesCS3B01G272600 chr3A 86.832 524 23 14 1744 2239 464795696 464795191 6.420000e-151 544.0
6 TraesCS3B01G272600 chr5D 97.683 259 6 0 1 259 530631122 530631380 1.860000e-121 446.0
7 TraesCS3B01G272600 chr5D 97.674 258 6 0 1 258 457556122 457555865 6.690000e-121 444.0
8 TraesCS3B01G272600 chr5D 85.366 82 11 1 2232 2312 395918049 395917968 1.680000e-12 84.2
9 TraesCS3B01G272600 chr2D 98.047 256 5 0 2 257 601654424 601654679 1.860000e-121 446.0
10 TraesCS3B01G272600 chr2D 97.674 258 6 0 1 258 284514855 284515112 6.690000e-121 444.0
11 TraesCS3B01G272600 chr6D 97.674 258 6 0 1 258 245016733 245016476 6.690000e-121 444.0
12 TraesCS3B01G272600 chr6D 73.176 425 74 22 2238 2636 431073083 431073493 1.660000e-22 117.0
13 TraesCS3B01G272600 chr6B 97.674 258 6 0 1 258 576275643 576275900 6.690000e-121 444.0
14 TraesCS3B01G272600 chr6B 95.349 43 2 0 2238 2280 498526855 498526897 4.710000e-08 69.4
15 TraesCS3B01G272600 chr4D 97.674 258 6 0 1 258 445335073 445334816 6.690000e-121 444.0
16 TraesCS3B01G272600 chr4D 96.947 262 8 0 1 262 6703908 6703647 8.660000e-120 440.0
17 TraesCS3B01G272600 chrUn 97.665 257 6 0 1 257 374649961 374650217 2.410000e-120 442.0
18 TraesCS3B01G272600 chr1A 86.441 295 28 8 1193 1475 562902607 562902901 1.970000e-81 313.0
19 TraesCS3B01G272600 chr1A 86.552 290 32 5 1188 1473 562923320 562923034 1.970000e-81 313.0
20 TraesCS3B01G272600 chr1A 84.932 73 11 0 2239 2311 548575055 548575127 1.010000e-09 75.0
21 TraesCS3B01G272600 chr1D 86.348 293 28 9 1193 1473 469795672 469795964 2.550000e-80 309.0
22 TraesCS3B01G272600 chr1D 84.950 299 32 7 1188 1473 469815181 469814883 9.230000e-75 291.0
23 TraesCS3B01G272600 chr1D 78.571 252 38 11 2330 2572 6322414 6322658 4.540000e-33 152.0
24 TraesCS3B01G272600 chr1D 95.556 45 2 0 2236 2280 375210328 375210372 3.640000e-09 73.1
25 TraesCS3B01G272600 chr1B 86.207 290 31 6 1193 1473 649670329 649670618 3.300000e-79 305.0
26 TraesCS3B01G272600 chr7D 84.642 293 33 8 1193 1473 561875576 561875868 5.550000e-72 281.0
27 TraesCS3B01G272600 chr7D 85.714 77 9 2 2237 2312 614182649 614182574 2.170000e-11 80.5
28 TraesCS3B01G272600 chr5A 81.587 315 43 13 1174 1473 69536252 69536566 2.030000e-61 246.0
29 TraesCS3B01G272600 chr5A 94.118 51 2 1 2236 2285 573596309 573596359 2.810000e-10 76.8
30 TraesCS3B01G272600 chr4B 89.617 183 18 1 2239 2421 389425156 389425337 5.670000e-57 231.0
31 TraesCS3B01G272600 chr2B 81.605 299 36 11 2243 2524 373765118 373765414 2.040000e-56 230.0
32 TraesCS3B01G272600 chr4A 73.183 399 71 20 2263 2636 543409135 543409522 7.710000e-21 111.0
33 TraesCS3B01G272600 chr7B 85.333 75 8 3 2239 2311 55865354 55865281 1.010000e-09 75.0
34 TraesCS3B01G272600 chr2A 100.000 28 0 0 534 561 100816196 100816169 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G272600 chr3B 438929561 438932196 2635 False 4868.0 4868 100.000000 1 2636 1 chr3B.!!$F1 2635
1 TraesCS3B01G272600 chr3D 340068838 340070839 2001 False 856.9 2211 92.574667 261 2239 3 chr3D.!!$F1 1978
2 TraesCS3B01G272600 chr3A 464795191 464797773 2582 True 1097.0 1650 87.550000 261 2239 2 chr3A.!!$R1 1978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.027194 CCGTCAGCAGCAAATCATCG 59.973 55.0 0.0 0.0 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2742 0.031449 CCGCAACCAAACACCGAAAT 59.969 50.0 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.979469 CTCATCGTCGTATTCATCGCC 59.021 52.381 0.00 0.00 0.00 5.54
21 22 0.702924 CATCGTCGTATTCATCGCCG 59.297 55.000 0.00 0.00 0.00 6.46
22 23 0.309922 ATCGTCGTATTCATCGCCGT 59.690 50.000 0.00 0.00 31.87 5.68
23 24 0.316442 TCGTCGTATTCATCGCCGTC 60.316 55.000 0.00 0.00 31.87 4.79
24 25 0.590481 CGTCGTATTCATCGCCGTCA 60.590 55.000 0.00 0.00 0.00 4.35
25 26 1.121240 GTCGTATTCATCGCCGTCAG 58.879 55.000 0.00 0.00 0.00 3.51
26 27 0.594028 TCGTATTCATCGCCGTCAGC 60.594 55.000 0.00 0.00 38.52 4.26
27 28 0.869880 CGTATTCATCGCCGTCAGCA 60.870 55.000 0.00 0.00 44.04 4.41
28 29 0.855349 GTATTCATCGCCGTCAGCAG 59.145 55.000 0.00 0.00 44.04 4.24
29 30 0.875908 TATTCATCGCCGTCAGCAGC 60.876 55.000 0.00 0.00 44.04 5.25
30 31 2.857575 ATTCATCGCCGTCAGCAGCA 62.858 55.000 0.00 0.00 44.04 4.41
31 32 3.120385 CATCGCCGTCAGCAGCAA 61.120 61.111 0.00 0.00 44.04 3.91
32 33 2.358615 ATCGCCGTCAGCAGCAAA 60.359 55.556 0.00 0.00 44.04 3.68
33 34 1.746615 ATCGCCGTCAGCAGCAAAT 60.747 52.632 0.00 0.00 44.04 2.32
34 35 1.709147 ATCGCCGTCAGCAGCAAATC 61.709 55.000 0.00 0.00 44.04 2.17
35 36 2.679934 CGCCGTCAGCAGCAAATCA 61.680 57.895 0.00 0.00 44.04 2.57
36 37 1.805254 GCCGTCAGCAGCAAATCAT 59.195 52.632 0.00 0.00 42.97 2.45
37 38 0.248377 GCCGTCAGCAGCAAATCATC 60.248 55.000 0.00 0.00 42.97 2.92
38 39 0.027194 CCGTCAGCAGCAAATCATCG 59.973 55.000 0.00 0.00 0.00 3.84
39 40 0.588233 CGTCAGCAGCAAATCATCGC 60.588 55.000 0.00 0.00 0.00 4.58
40 41 0.248377 GTCAGCAGCAAATCATCGCC 60.248 55.000 0.00 0.00 0.00 5.54
41 42 0.677414 TCAGCAGCAAATCATCGCCA 60.677 50.000 0.00 0.00 0.00 5.69
42 43 0.171679 CAGCAGCAAATCATCGCCAA 59.828 50.000 0.00 0.00 0.00 4.52
43 44 0.171903 AGCAGCAAATCATCGCCAAC 59.828 50.000 0.00 0.00 0.00 3.77
44 45 0.109179 GCAGCAAATCATCGCCAACA 60.109 50.000 0.00 0.00 0.00 3.33
45 46 1.470285 GCAGCAAATCATCGCCAACAT 60.470 47.619 0.00 0.00 0.00 2.71
46 47 2.456989 CAGCAAATCATCGCCAACATC 58.543 47.619 0.00 0.00 0.00 3.06
47 48 1.064505 AGCAAATCATCGCCAACATCG 59.935 47.619 0.00 0.00 0.00 3.84
48 49 1.202177 GCAAATCATCGCCAACATCGT 60.202 47.619 0.00 0.00 0.00 3.73
49 50 2.708514 CAAATCATCGCCAACATCGTC 58.291 47.619 0.00 0.00 0.00 4.20
50 51 2.022764 AATCATCGCCAACATCGTCA 57.977 45.000 0.00 0.00 0.00 4.35
51 52 2.245159 ATCATCGCCAACATCGTCAT 57.755 45.000 0.00 0.00 0.00 3.06
52 53 1.570813 TCATCGCCAACATCGTCATC 58.429 50.000 0.00 0.00 0.00 2.92
53 54 1.134848 TCATCGCCAACATCGTCATCA 60.135 47.619 0.00 0.00 0.00 3.07
54 55 1.665169 CATCGCCAACATCGTCATCAA 59.335 47.619 0.00 0.00 0.00 2.57
55 56 1.075542 TCGCCAACATCGTCATCAAC 58.924 50.000 0.00 0.00 0.00 3.18
56 57 0.795698 CGCCAACATCGTCATCAACA 59.204 50.000 0.00 0.00 0.00 3.33
57 58 1.464023 CGCCAACATCGTCATCAACAC 60.464 52.381 0.00 0.00 0.00 3.32
58 59 1.806542 GCCAACATCGTCATCAACACT 59.193 47.619 0.00 0.00 0.00 3.55
59 60 2.413239 GCCAACATCGTCATCAACACTG 60.413 50.000 0.00 0.00 0.00 3.66
60 61 2.807967 CCAACATCGTCATCAACACTGT 59.192 45.455 0.00 0.00 0.00 3.55
61 62 3.120546 CCAACATCGTCATCAACACTGTC 60.121 47.826 0.00 0.00 0.00 3.51
62 63 2.328473 ACATCGTCATCAACACTGTCG 58.672 47.619 0.00 0.00 0.00 4.35
63 64 1.059692 CATCGTCATCAACACTGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
64 65 0.031449 TCGTCATCAACACTGTCGCA 59.969 50.000 0.00 0.00 0.00 5.10
65 66 0.161658 CGTCATCAACACTGTCGCAC 59.838 55.000 0.00 0.00 0.00 5.34
66 67 0.512952 GTCATCAACACTGTCGCACC 59.487 55.000 0.00 0.00 0.00 5.01
67 68 0.602638 TCATCAACACTGTCGCACCC 60.603 55.000 0.00 0.00 0.00 4.61
68 69 0.884259 CATCAACACTGTCGCACCCA 60.884 55.000 0.00 0.00 0.00 4.51
69 70 0.036732 ATCAACACTGTCGCACCCAT 59.963 50.000 0.00 0.00 0.00 4.00
70 71 0.682292 TCAACACTGTCGCACCCATA 59.318 50.000 0.00 0.00 0.00 2.74
71 72 1.070914 TCAACACTGTCGCACCCATAA 59.929 47.619 0.00 0.00 0.00 1.90
72 73 2.083774 CAACACTGTCGCACCCATAAT 58.916 47.619 0.00 0.00 0.00 1.28
73 74 3.055747 TCAACACTGTCGCACCCATAATA 60.056 43.478 0.00 0.00 0.00 0.98
74 75 3.179443 ACACTGTCGCACCCATAATAG 57.821 47.619 0.00 0.00 0.00 1.73
75 76 1.867233 CACTGTCGCACCCATAATAGC 59.133 52.381 0.00 0.00 0.00 2.97
76 77 1.762957 ACTGTCGCACCCATAATAGCT 59.237 47.619 0.00 0.00 0.00 3.32
77 78 2.963101 ACTGTCGCACCCATAATAGCTA 59.037 45.455 0.00 0.00 0.00 3.32
78 79 3.386726 ACTGTCGCACCCATAATAGCTAA 59.613 43.478 0.00 0.00 0.00 3.09
79 80 3.724374 TGTCGCACCCATAATAGCTAAC 58.276 45.455 0.00 0.00 0.00 2.34
80 81 2.729882 GTCGCACCCATAATAGCTAACG 59.270 50.000 0.00 0.00 0.00 3.18
81 82 2.624364 TCGCACCCATAATAGCTAACGA 59.376 45.455 0.00 0.00 0.00 3.85
82 83 3.257375 TCGCACCCATAATAGCTAACGAT 59.743 43.478 0.00 0.00 0.00 3.73
83 84 3.612860 CGCACCCATAATAGCTAACGATC 59.387 47.826 0.00 0.00 0.00 3.69
84 85 4.566004 GCACCCATAATAGCTAACGATCA 58.434 43.478 0.00 0.00 0.00 2.92
85 86 4.627467 GCACCCATAATAGCTAACGATCAG 59.373 45.833 0.00 0.00 0.00 2.90
86 87 5.784177 CACCCATAATAGCTAACGATCAGT 58.216 41.667 0.00 0.00 0.00 3.41
87 88 6.571731 GCACCCATAATAGCTAACGATCAGTA 60.572 42.308 0.00 0.00 0.00 2.74
88 89 6.807230 CACCCATAATAGCTAACGATCAGTAC 59.193 42.308 0.00 0.00 0.00 2.73
89 90 6.028368 CCCATAATAGCTAACGATCAGTACG 58.972 44.000 0.00 0.00 0.00 3.67
90 91 6.349115 CCCATAATAGCTAACGATCAGTACGT 60.349 42.308 0.00 0.00 45.89 3.57
91 92 6.741811 CCATAATAGCTAACGATCAGTACGTC 59.258 42.308 0.00 0.00 43.16 4.34
92 93 4.745837 ATAGCTAACGATCAGTACGTCC 57.254 45.455 0.00 0.00 43.16 4.79
93 94 2.362736 AGCTAACGATCAGTACGTCCA 58.637 47.619 0.00 0.00 43.16 4.02
94 95 2.751259 AGCTAACGATCAGTACGTCCAA 59.249 45.455 0.00 0.00 43.16 3.53
95 96 2.850647 GCTAACGATCAGTACGTCCAAC 59.149 50.000 0.00 0.00 43.16 3.77
96 97 3.671433 GCTAACGATCAGTACGTCCAACA 60.671 47.826 0.00 0.00 43.16 3.33
97 98 3.587797 AACGATCAGTACGTCCAACAT 57.412 42.857 0.00 0.00 43.16 2.71
98 99 3.146618 ACGATCAGTACGTCCAACATC 57.853 47.619 0.00 0.00 39.87 3.06
99 100 2.159282 ACGATCAGTACGTCCAACATCC 60.159 50.000 0.00 0.00 39.87 3.51
100 101 2.099263 CGATCAGTACGTCCAACATCCT 59.901 50.000 0.00 0.00 0.00 3.24
101 102 3.707793 GATCAGTACGTCCAACATCCTC 58.292 50.000 0.00 0.00 0.00 3.71
102 103 2.803956 TCAGTACGTCCAACATCCTCT 58.196 47.619 0.00 0.00 0.00 3.69
103 104 2.492088 TCAGTACGTCCAACATCCTCTG 59.508 50.000 0.00 0.00 0.00 3.35
104 105 2.231478 CAGTACGTCCAACATCCTCTGT 59.769 50.000 0.00 0.00 40.84 3.41
106 107 2.457366 ACGTCCAACATCCTCTGTTC 57.543 50.000 0.00 0.00 44.99 3.18
107 108 1.691976 ACGTCCAACATCCTCTGTTCA 59.308 47.619 0.00 0.00 44.99 3.18
108 109 2.303022 ACGTCCAACATCCTCTGTTCAT 59.697 45.455 0.00 0.00 44.99 2.57
109 110 2.674852 CGTCCAACATCCTCTGTTCATG 59.325 50.000 0.00 0.00 44.99 3.07
110 111 3.679389 GTCCAACATCCTCTGTTCATGT 58.321 45.455 0.00 0.00 44.99 3.21
111 112 3.686726 GTCCAACATCCTCTGTTCATGTC 59.313 47.826 0.00 0.00 44.99 3.06
112 113 3.584406 TCCAACATCCTCTGTTCATGTCT 59.416 43.478 0.00 0.00 44.99 3.41
113 114 3.688185 CCAACATCCTCTGTTCATGTCTG 59.312 47.826 0.00 0.00 44.99 3.51
114 115 4.321718 CAACATCCTCTGTTCATGTCTGT 58.678 43.478 0.00 0.00 44.99 3.41
115 116 4.630644 ACATCCTCTGTTCATGTCTGTT 57.369 40.909 0.00 0.00 32.90 3.16
116 117 4.978099 ACATCCTCTGTTCATGTCTGTTT 58.022 39.130 0.00 0.00 32.90 2.83
117 118 4.999950 ACATCCTCTGTTCATGTCTGTTTC 59.000 41.667 0.00 0.00 32.90 2.78
118 119 4.963318 TCCTCTGTTCATGTCTGTTTCT 57.037 40.909 0.00 0.00 0.00 2.52
119 120 6.014242 ACATCCTCTGTTCATGTCTGTTTCTA 60.014 38.462 0.00 0.00 32.90 2.10
120 121 5.784177 TCCTCTGTTCATGTCTGTTTCTAC 58.216 41.667 0.00 0.00 0.00 2.59
121 122 5.304357 TCCTCTGTTCATGTCTGTTTCTACA 59.696 40.000 0.00 0.00 0.00 2.74
134 135 6.946229 CTGTTTCTACAGCTATTGTTACGT 57.054 37.500 0.00 0.00 44.81 3.57
135 136 6.699895 TGTTTCTACAGCTATTGTTACGTG 57.300 37.500 0.00 0.00 41.29 4.49
136 137 6.218019 TGTTTCTACAGCTATTGTTACGTGT 58.782 36.000 0.00 0.00 41.29 4.49
137 138 6.702723 TGTTTCTACAGCTATTGTTACGTGTT 59.297 34.615 0.00 0.00 41.29 3.32
138 139 7.225145 TGTTTCTACAGCTATTGTTACGTGTTT 59.775 33.333 0.00 0.00 41.29 2.83
139 140 6.699895 TCTACAGCTATTGTTACGTGTTTG 57.300 37.500 0.00 0.00 41.29 2.93
140 141 4.141855 ACAGCTATTGTTACGTGTTTGC 57.858 40.909 0.00 0.00 36.31 3.68
141 142 3.813166 ACAGCTATTGTTACGTGTTTGCT 59.187 39.130 0.00 0.00 36.31 3.91
142 143 4.151070 CAGCTATTGTTACGTGTTTGCTG 58.849 43.478 0.00 5.38 39.16 4.41
143 144 2.908626 GCTATTGTTACGTGTTTGCTGC 59.091 45.455 0.00 0.00 0.00 5.25
144 145 3.364964 GCTATTGTTACGTGTTTGCTGCT 60.365 43.478 0.00 0.00 0.00 4.24
145 146 2.466870 TTGTTACGTGTTTGCTGCTG 57.533 45.000 0.00 0.00 0.00 4.41
146 147 1.374560 TGTTACGTGTTTGCTGCTGT 58.625 45.000 0.00 0.00 0.00 4.40
147 148 1.740585 TGTTACGTGTTTGCTGCTGTT 59.259 42.857 0.00 0.00 0.00 3.16
148 149 2.937149 TGTTACGTGTTTGCTGCTGTTA 59.063 40.909 0.00 0.00 0.00 2.41
149 150 3.562141 TGTTACGTGTTTGCTGCTGTTAT 59.438 39.130 0.00 0.00 0.00 1.89
150 151 2.686558 ACGTGTTTGCTGCTGTTATG 57.313 45.000 0.00 0.00 0.00 1.90
151 152 1.330306 CGTGTTTGCTGCTGTTATGC 58.670 50.000 0.00 0.00 0.00 3.14
152 153 1.334870 CGTGTTTGCTGCTGTTATGCA 60.335 47.619 0.00 0.00 41.05 3.96
153 154 2.669113 CGTGTTTGCTGCTGTTATGCAT 60.669 45.455 3.79 3.79 42.48 3.96
154 155 2.664568 GTGTTTGCTGCTGTTATGCATG 59.335 45.455 10.16 0.00 42.48 4.06
155 156 2.296752 TGTTTGCTGCTGTTATGCATGT 59.703 40.909 10.16 0.00 42.48 3.21
156 157 2.919229 GTTTGCTGCTGTTATGCATGTC 59.081 45.455 10.16 2.63 42.48 3.06
157 158 2.118313 TGCTGCTGTTATGCATGTCT 57.882 45.000 10.16 0.00 42.48 3.41
158 159 2.439409 TGCTGCTGTTATGCATGTCTT 58.561 42.857 10.16 0.00 42.48 3.01
159 160 2.162809 TGCTGCTGTTATGCATGTCTTG 59.837 45.455 10.16 0.00 42.48 3.02
174 175 6.551385 CATGTCTTGCTGTTCTTCTAGTTT 57.449 37.500 0.00 0.00 0.00 2.66
175 176 5.991328 TGTCTTGCTGTTCTTCTAGTTTG 57.009 39.130 0.00 0.00 0.00 2.93
176 177 4.273480 TGTCTTGCTGTTCTTCTAGTTTGC 59.727 41.667 0.00 0.00 0.00 3.68
177 178 4.513318 GTCTTGCTGTTCTTCTAGTTTGCT 59.487 41.667 0.00 0.00 0.00 3.91
178 179 5.696724 GTCTTGCTGTTCTTCTAGTTTGCTA 59.303 40.000 0.00 0.00 0.00 3.49
179 180 5.928839 TCTTGCTGTTCTTCTAGTTTGCTAG 59.071 40.000 0.00 0.00 44.60 3.42
191 192 7.194607 TCTAGTTTGCTAGATTATTGCATGC 57.805 36.000 11.82 11.82 46.25 4.06
192 193 6.994496 TCTAGTTTGCTAGATTATTGCATGCT 59.006 34.615 20.33 1.26 46.25 3.79
193 194 8.150296 TCTAGTTTGCTAGATTATTGCATGCTA 58.850 33.333 20.33 12.49 46.25 3.49
194 195 7.199541 AGTTTGCTAGATTATTGCATGCTAG 57.800 36.000 20.33 11.08 39.44 3.42
195 196 6.769822 AGTTTGCTAGATTATTGCATGCTAGT 59.230 34.615 20.33 7.25 39.44 2.57
196 197 7.933577 AGTTTGCTAGATTATTGCATGCTAGTA 59.066 33.333 20.33 6.90 39.44 1.82
197 198 8.725148 GTTTGCTAGATTATTGCATGCTAGTAT 58.275 33.333 20.33 8.74 39.44 2.12
198 199 8.484641 TTGCTAGATTATTGCATGCTAGTATC 57.515 34.615 20.33 16.54 39.44 2.24
199 200 7.845037 TGCTAGATTATTGCATGCTAGTATCT 58.155 34.615 20.33 21.74 34.60 1.98
200 201 8.316946 TGCTAGATTATTGCATGCTAGTATCTT 58.683 33.333 23.40 13.62 34.60 2.40
201 202 9.160496 GCTAGATTATTGCATGCTAGTATCTTT 57.840 33.333 23.40 11.02 33.01 2.52
204 205 9.790344 AGATTATTGCATGCTAGTATCTTTTCT 57.210 29.630 20.33 5.38 0.00 2.52
208 209 8.600449 ATTGCATGCTAGTATCTTTTCTAGTC 57.400 34.615 20.33 0.00 36.84 2.59
209 210 7.112452 TGCATGCTAGTATCTTTTCTAGTCA 57.888 36.000 20.33 0.00 36.84 3.41
210 211 7.730084 TGCATGCTAGTATCTTTTCTAGTCAT 58.270 34.615 20.33 0.00 36.84 3.06
211 212 8.206867 TGCATGCTAGTATCTTTTCTAGTCATT 58.793 33.333 20.33 0.00 36.84 2.57
212 213 9.698309 GCATGCTAGTATCTTTTCTAGTCATTA 57.302 33.333 11.37 0.00 36.84 1.90
256 257 9.699410 ATCATGAACTTTCCTAATATTCCAACA 57.301 29.630 0.00 0.00 0.00 3.33
257 258 9.699410 TCATGAACTTTCCTAATATTCCAACAT 57.301 29.630 0.00 0.00 0.00 2.71
258 259 9.740239 CATGAACTTTCCTAATATTCCAACATG 57.260 33.333 0.00 0.00 0.00 3.21
259 260 7.771183 TGAACTTTCCTAATATTCCAACATGC 58.229 34.615 0.00 0.00 0.00 4.06
320 348 0.464452 GTCATTAGCAGCCTACGGGT 59.536 55.000 0.00 0.00 34.45 5.28
368 396 5.499139 TCAATAAAGTCCCAATTCGATGC 57.501 39.130 0.00 0.00 0.00 3.91
369 397 4.946772 TCAATAAAGTCCCAATTCGATGCA 59.053 37.500 0.00 0.00 0.00 3.96
370 398 5.417266 TCAATAAAGTCCCAATTCGATGCAA 59.583 36.000 0.00 0.00 0.00 4.08
371 399 5.913137 ATAAAGTCCCAATTCGATGCAAA 57.087 34.783 0.00 0.00 0.00 3.68
372 400 4.599047 AAAGTCCCAATTCGATGCAAAA 57.401 36.364 0.00 0.00 0.00 2.44
373 401 4.599047 AAGTCCCAATTCGATGCAAAAA 57.401 36.364 0.00 0.00 0.00 1.94
374 402 4.178545 AGTCCCAATTCGATGCAAAAAG 57.821 40.909 0.00 0.00 0.00 2.27
375 403 3.826157 AGTCCCAATTCGATGCAAAAAGA 59.174 39.130 0.00 0.00 0.00 2.52
376 404 4.280677 AGTCCCAATTCGATGCAAAAAGAA 59.719 37.500 0.00 0.00 0.00 2.52
381 409 6.365050 CCAATTCGATGCAAAAAGAAAAAGG 58.635 36.000 0.00 0.00 0.00 3.11
386 414 6.999456 TCGATGCAAAAAGAAAAAGGAAAAC 58.001 32.000 0.00 0.00 0.00 2.43
417 446 0.539438 TGATTTGTGCTCCCACCACC 60.539 55.000 0.00 0.00 41.35 4.61
418 447 0.539438 GATTTGTGCTCCCACCACCA 60.539 55.000 0.00 0.00 41.35 4.17
424 453 1.452108 GCTCCCACCACCATAGTGC 60.452 63.158 0.00 0.00 43.09 4.40
485 515 0.602905 AGAGTCGGTGCGGGAAAAAG 60.603 55.000 0.00 0.00 0.00 2.27
523 582 5.174395 CGAAGAATCTGAATTCAGGACACT 58.826 41.667 30.33 21.33 43.21 3.55
527 586 7.111247 AGAATCTGAATTCAGGACACTAGAG 57.889 40.000 30.33 6.64 43.21 2.43
529 588 4.089361 TCTGAATTCAGGACACTAGAGCA 58.911 43.478 30.33 8.09 43.91 4.26
577 636 0.874390 GGTCATGCTCAACAAAGCGA 59.126 50.000 0.00 0.00 45.54 4.93
599 658 6.512415 GCGATATCCTTGGAATCTTGTTTCTG 60.512 42.308 0.00 0.00 0.00 3.02
634 705 0.541764 AACATCCACCGGCCAAACAT 60.542 50.000 0.00 0.00 0.00 2.71
698 770 3.007070 ATCGTTCGTTGTTCCGCGC 62.007 57.895 0.00 0.00 0.00 6.86
720 797 2.485124 CCCAGCCTCATGATCTGACTTC 60.485 54.545 20.47 0.00 0.00 3.01
721 798 2.485124 CCAGCCTCATGATCTGACTTCC 60.485 54.545 20.47 0.00 0.00 3.46
722 799 2.169978 CAGCCTCATGATCTGACTTCCA 59.830 50.000 16.05 0.00 0.00 3.53
723 800 2.842496 AGCCTCATGATCTGACTTCCAA 59.158 45.455 0.00 0.00 0.00 3.53
724 801 3.118334 AGCCTCATGATCTGACTTCCAAG 60.118 47.826 0.00 0.00 0.00 3.61
725 802 3.370315 GCCTCATGATCTGACTTCCAAGT 60.370 47.826 0.00 0.00 43.16 3.16
726 803 4.841422 CCTCATGATCTGACTTCCAAGTT 58.159 43.478 0.00 0.00 39.88 2.66
882 964 1.332144 GCGGGTCCCACATACTACCA 61.332 60.000 9.12 0.00 33.46 3.25
918 1000 1.751143 TTCCCACCTCACCTCCCTCT 61.751 60.000 0.00 0.00 0.00 3.69
933 1015 4.035792 CCTCCCTCTTCGCTGTATATATCG 59.964 50.000 0.00 0.00 0.00 2.92
959 1041 0.040204 CTTCACCTCCCCAAGCCATT 59.960 55.000 0.00 0.00 0.00 3.16
962 1044 0.748005 CACCTCCCCAAGCCATTACG 60.748 60.000 0.00 0.00 0.00 3.18
964 1046 1.823899 CTCCCCAAGCCATTACGCC 60.824 63.158 0.00 0.00 0.00 5.68
966 1048 2.833121 CCCAAGCCATTACGCCCC 60.833 66.667 0.00 0.00 0.00 5.80
967 1049 2.044451 CCAAGCCATTACGCCCCA 60.044 61.111 0.00 0.00 0.00 4.96
968 1050 1.680651 CCAAGCCATTACGCCCCAA 60.681 57.895 0.00 0.00 0.00 4.12
971 1053 2.361865 GCCATTACGCCCCAACCA 60.362 61.111 0.00 0.00 0.00 3.67
972 1054 1.756561 GCCATTACGCCCCAACCAT 60.757 57.895 0.00 0.00 0.00 3.55
999 1090 3.716006 CACACACCCGCGCAAGAG 61.716 66.667 8.75 0.00 43.02 2.85
1016 1113 2.362503 GGGAAAAGAAGGCCGGGG 60.363 66.667 2.18 0.00 0.00 5.73
1028 1125 4.684623 CCGGGGGCATCAAAGAAT 57.315 55.556 0.00 0.00 0.00 2.40
1029 1126 2.419057 CCGGGGGCATCAAAGAATC 58.581 57.895 0.00 0.00 0.00 2.52
1030 1127 1.109323 CCGGGGGCATCAAAGAATCC 61.109 60.000 0.00 0.00 0.00 3.01
1031 1128 0.395586 CGGGGGCATCAAAGAATCCA 60.396 55.000 0.00 0.00 0.00 3.41
1032 1129 1.864669 GGGGGCATCAAAGAATCCAA 58.135 50.000 0.00 0.00 0.00 3.53
1033 1130 1.758862 GGGGGCATCAAAGAATCCAAG 59.241 52.381 0.00 0.00 0.00 3.61
1034 1131 1.137675 GGGGCATCAAAGAATCCAAGC 59.862 52.381 0.00 0.00 0.00 4.01
1035 1132 1.137675 GGGCATCAAAGAATCCAAGCC 59.862 52.381 0.00 0.00 40.08 4.35
1036 1133 1.826720 GGCATCAAAGAATCCAAGCCA 59.173 47.619 0.00 0.00 40.50 4.75
1037 1134 2.234414 GGCATCAAAGAATCCAAGCCAA 59.766 45.455 0.00 0.00 40.50 4.52
1038 1135 3.256558 GCATCAAAGAATCCAAGCCAAC 58.743 45.455 0.00 0.00 0.00 3.77
1039 1136 3.504863 CATCAAAGAATCCAAGCCAACG 58.495 45.455 0.00 0.00 0.00 4.10
1040 1137 1.269448 TCAAAGAATCCAAGCCAACGC 59.731 47.619 0.00 0.00 0.00 4.84
1041 1138 0.240945 AAAGAATCCAAGCCAACGCG 59.759 50.000 3.53 3.53 41.18 6.01
1507 1607 6.068670 CCTTCCTTTCCTTAGTTTCCTTTCA 58.931 40.000 0.00 0.00 0.00 2.69
1551 1651 1.153168 CCTGGCCGTTGGATCGAAT 60.153 57.895 0.00 0.00 0.00 3.34
1664 1768 4.891992 AACAGACAGGTAGCATTACTGT 57.108 40.909 0.00 0.00 38.48 3.55
1669 1773 6.204882 ACAGACAGGTAGCATTACTGTTTTTC 59.795 38.462 0.00 0.00 34.21 2.29
1717 2441 2.876091 TGTGAATACGGAAGAAGAGCG 58.124 47.619 0.00 0.00 0.00 5.03
1720 2444 1.588861 GAATACGGAAGAAGAGCGTGC 59.411 52.381 0.00 0.00 0.00 5.34
1793 2517 5.069648 TGAGAATCAGATGCTTCTTACGGAT 59.930 40.000 0.00 0.00 42.56 4.18
1890 2640 5.010012 GTCATGGTTGGTTGTTGAGAAGATT 59.990 40.000 0.00 0.00 0.00 2.40
1925 2675 1.039233 GCATACAGGTGGCATGGCTT 61.039 55.000 21.08 3.25 0.00 4.35
1926 2676 1.027357 CATACAGGTGGCATGGCTTC 58.973 55.000 21.08 12.91 0.00 3.86
1992 2742 4.080356 CCTGATTCCATTCCAGTCCAACTA 60.080 45.833 0.00 0.00 0.00 2.24
2090 2845 4.707030 TCTTTTACTTGCATGCATCCTG 57.293 40.909 23.37 14.22 0.00 3.86
2091 2846 3.444742 TCTTTTACTTGCATGCATCCTGG 59.555 43.478 23.37 11.72 0.00 4.45
2092 2847 2.804986 TTACTTGCATGCATCCTGGA 57.195 45.000 23.37 3.98 0.00 3.86
2093 2848 2.042686 TACTTGCATGCATCCTGGAC 57.957 50.000 23.37 0.00 0.00 4.02
2094 2849 0.330604 ACTTGCATGCATCCTGGACT 59.669 50.000 23.37 0.00 0.00 3.85
2095 2850 1.022735 CTTGCATGCATCCTGGACTC 58.977 55.000 23.37 0.00 0.00 3.36
2153 2908 6.166279 TCATCATCAACAACTAGTCTTGGAC 58.834 40.000 11.49 0.00 0.00 4.02
2155 2910 5.784177 TCATCAACAACTAGTCTTGGACTC 58.216 41.667 11.49 0.00 42.40 3.36
2162 2917 2.678836 ACTAGTCTTGGACTCGTCATCG 59.321 50.000 3.32 0.00 42.40 3.84
2164 2919 1.887198 AGTCTTGGACTCGTCATCGTT 59.113 47.619 0.00 0.00 38.71 3.85
2165 2920 2.296471 AGTCTTGGACTCGTCATCGTTT 59.704 45.455 0.00 0.00 38.71 3.60
2166 2921 3.504906 AGTCTTGGACTCGTCATCGTTTA 59.495 43.478 0.00 0.00 38.71 2.01
2167 2922 4.158025 AGTCTTGGACTCGTCATCGTTTAT 59.842 41.667 0.00 0.00 38.71 1.40
2168 2923 5.356190 AGTCTTGGACTCGTCATCGTTTATA 59.644 40.000 0.00 0.00 38.71 0.98
2169 2924 6.039493 AGTCTTGGACTCGTCATCGTTTATAT 59.961 38.462 0.00 0.00 38.71 0.86
2170 2925 6.696148 GTCTTGGACTCGTCATCGTTTATATT 59.304 38.462 0.00 0.00 38.33 1.28
2171 2926 7.222224 GTCTTGGACTCGTCATCGTTTATATTT 59.778 37.037 0.00 0.00 38.33 1.40
2172 2927 7.762615 TCTTGGACTCGTCATCGTTTATATTTT 59.237 33.333 0.00 0.00 38.33 1.82
2173 2928 7.837202 TGGACTCGTCATCGTTTATATTTTT 57.163 32.000 0.00 0.00 38.33 1.94
2174 2929 7.902032 TGGACTCGTCATCGTTTATATTTTTC 58.098 34.615 0.00 0.00 38.33 2.29
2175 2930 7.762615 TGGACTCGTCATCGTTTATATTTTTCT 59.237 33.333 0.00 0.00 38.33 2.52
2176 2931 9.241317 GGACTCGTCATCGTTTATATTTTTCTA 57.759 33.333 0.00 0.00 38.33 2.10
2224 2984 0.609681 AGAGGAGACGAGAAGCGGTT 60.610 55.000 0.00 0.00 46.49 4.44
2239 2999 5.469084 AGAAGCGGTTACTTGGAAAACTAAG 59.531 40.000 0.00 0.00 0.00 2.18
2240 3000 4.070009 AGCGGTTACTTGGAAAACTAAGG 58.930 43.478 0.00 0.00 0.00 2.69
2241 3001 3.365666 GCGGTTACTTGGAAAACTAAGGC 60.366 47.826 0.00 0.00 0.00 4.35
2242 3002 3.189910 CGGTTACTTGGAAAACTAAGGCC 59.810 47.826 0.00 0.00 0.00 5.19
2243 3003 4.146564 GGTTACTTGGAAAACTAAGGCCA 58.853 43.478 5.01 0.00 0.00 5.36
2244 3004 4.585581 GGTTACTTGGAAAACTAAGGCCAA 59.414 41.667 5.01 0.00 38.02 4.52
2245 3005 5.508489 GGTTACTTGGAAAACTAAGGCCAAC 60.508 44.000 5.01 0.00 35.61 3.77
2246 3006 3.910989 ACTTGGAAAACTAAGGCCAACT 58.089 40.909 5.01 0.00 35.61 3.16
2247 3007 3.889538 ACTTGGAAAACTAAGGCCAACTC 59.110 43.478 5.01 0.00 35.61 3.01
2248 3008 2.871453 TGGAAAACTAAGGCCAACTCC 58.129 47.619 5.01 1.08 0.00 3.85
2249 3009 2.175931 TGGAAAACTAAGGCCAACTCCA 59.824 45.455 5.01 4.00 0.00 3.86
2250 3010 2.820197 GGAAAACTAAGGCCAACTCCAG 59.180 50.000 5.01 0.00 0.00 3.86
2251 3011 3.487372 GAAAACTAAGGCCAACTCCAGT 58.513 45.455 5.01 0.00 0.00 4.00
2252 3012 2.568623 AACTAAGGCCAACTCCAGTG 57.431 50.000 5.01 0.00 0.00 3.66
2253 3013 0.036875 ACTAAGGCCAACTCCAGTGC 59.963 55.000 5.01 0.00 0.00 4.40
2254 3014 0.036732 CTAAGGCCAACTCCAGTGCA 59.963 55.000 5.01 0.00 0.00 4.57
2255 3015 0.250727 TAAGGCCAACTCCAGTGCAC 60.251 55.000 9.40 9.40 0.00 4.57
2256 3016 3.357079 GGCCAACTCCAGTGCACG 61.357 66.667 12.01 6.45 0.00 5.34
2257 3017 2.280797 GCCAACTCCAGTGCACGA 60.281 61.111 12.01 2.43 0.00 4.35
2258 3018 1.672356 GCCAACTCCAGTGCACGAT 60.672 57.895 12.01 0.00 0.00 3.73
2259 3019 1.639298 GCCAACTCCAGTGCACGATC 61.639 60.000 12.01 0.00 0.00 3.69
2260 3020 1.021390 CCAACTCCAGTGCACGATCC 61.021 60.000 12.01 0.00 0.00 3.36
2261 3021 1.021390 CAACTCCAGTGCACGATCCC 61.021 60.000 12.01 0.00 0.00 3.85
2262 3022 1.480212 AACTCCAGTGCACGATCCCA 61.480 55.000 12.01 0.00 0.00 4.37
2263 3023 1.296392 CTCCAGTGCACGATCCCAA 59.704 57.895 12.01 0.00 0.00 4.12
2264 3024 0.321564 CTCCAGTGCACGATCCCAAA 60.322 55.000 12.01 0.00 0.00 3.28
2265 3025 0.605319 TCCAGTGCACGATCCCAAAC 60.605 55.000 12.01 0.00 0.00 2.93
2266 3026 1.497278 CAGTGCACGATCCCAAACG 59.503 57.895 12.01 0.00 0.00 3.60
2267 3027 1.671054 AGTGCACGATCCCAAACGG 60.671 57.895 12.01 0.00 0.00 4.44
2269 3029 1.669760 TGCACGATCCCAAACGGAC 60.670 57.895 0.00 0.00 46.09 4.79
2270 3030 2.736682 GCACGATCCCAAACGGACG 61.737 63.158 0.00 0.00 46.09 4.79
2271 3031 1.373748 CACGATCCCAAACGGACGT 60.374 57.895 0.00 0.00 46.09 4.34
2272 3032 1.080298 ACGATCCCAAACGGACGTC 60.080 57.895 7.13 7.13 46.09 4.34
2273 3033 1.808390 CGATCCCAAACGGACGTCC 60.808 63.158 25.28 25.28 46.09 4.79
2283 3043 2.281276 GGACGTCCGTTTTGGCCT 60.281 61.111 20.85 0.00 37.80 5.19
2284 3044 2.613506 GGACGTCCGTTTTGGCCTG 61.614 63.158 20.85 0.00 37.80 4.85
2285 3045 1.890510 GACGTCCGTTTTGGCCTGT 60.891 57.895 3.51 0.00 37.80 4.00
2286 3046 1.441732 GACGTCCGTTTTGGCCTGTT 61.442 55.000 3.51 0.00 37.80 3.16
2287 3047 1.033202 ACGTCCGTTTTGGCCTGTTT 61.033 50.000 3.32 0.00 37.80 2.83
2288 3048 0.101579 CGTCCGTTTTGGCCTGTTTT 59.898 50.000 3.32 0.00 37.80 2.43
2289 3049 1.847818 GTCCGTTTTGGCCTGTTTTC 58.152 50.000 3.32 0.00 37.80 2.29
2290 3050 0.382515 TCCGTTTTGGCCTGTTTTCG 59.617 50.000 3.32 1.43 37.80 3.46
2291 3051 0.101579 CCGTTTTGGCCTGTTTTCGT 59.898 50.000 3.32 0.00 0.00 3.85
2292 3052 1.470112 CCGTTTTGGCCTGTTTTCGTT 60.470 47.619 3.32 0.00 0.00 3.85
2293 3053 2.223525 CCGTTTTGGCCTGTTTTCGTTA 60.224 45.455 3.32 0.00 0.00 3.18
2294 3054 3.040099 CGTTTTGGCCTGTTTTCGTTAG 58.960 45.455 3.32 0.00 0.00 2.34
2295 3055 3.487879 CGTTTTGGCCTGTTTTCGTTAGT 60.488 43.478 3.32 0.00 0.00 2.24
2296 3056 4.426416 GTTTTGGCCTGTTTTCGTTAGTT 58.574 39.130 3.32 0.00 0.00 2.24
2297 3057 4.722361 TTTGGCCTGTTTTCGTTAGTTT 57.278 36.364 3.32 0.00 0.00 2.66
2298 3058 3.701532 TGGCCTGTTTTCGTTAGTTTG 57.298 42.857 3.32 0.00 0.00 2.93
2299 3059 2.359531 TGGCCTGTTTTCGTTAGTTTGG 59.640 45.455 3.32 0.00 0.00 3.28
2300 3060 2.287970 GGCCTGTTTTCGTTAGTTTGGG 60.288 50.000 0.00 0.00 0.00 4.12
2301 3061 2.619646 GCCTGTTTTCGTTAGTTTGGGA 59.380 45.455 0.00 0.00 0.00 4.37
2302 3062 3.549423 GCCTGTTTTCGTTAGTTTGGGAC 60.549 47.826 0.00 0.00 0.00 4.46
2303 3063 3.303526 CCTGTTTTCGTTAGTTTGGGACG 60.304 47.826 0.00 0.00 38.09 4.79
2304 3064 2.613133 TGTTTTCGTTAGTTTGGGACGG 59.387 45.455 0.00 0.00 37.39 4.79
2305 3065 1.228533 TTTCGTTAGTTTGGGACGGC 58.771 50.000 0.00 0.00 37.39 5.68
2306 3066 0.106335 TTCGTTAGTTTGGGACGGCA 59.894 50.000 0.00 0.00 37.39 5.69
2307 3067 0.106335 TCGTTAGTTTGGGACGGCAA 59.894 50.000 0.00 0.00 37.39 4.52
2308 3068 1.161843 CGTTAGTTTGGGACGGCAAT 58.838 50.000 0.00 0.00 33.45 3.56
2309 3069 1.135803 CGTTAGTTTGGGACGGCAATG 60.136 52.381 0.00 0.00 33.45 2.82
2310 3070 1.201414 GTTAGTTTGGGACGGCAATGG 59.799 52.381 0.00 0.00 0.00 3.16
2311 3071 0.322997 TAGTTTGGGACGGCAATGGG 60.323 55.000 0.00 0.00 0.00 4.00
2312 3072 1.605165 GTTTGGGACGGCAATGGGA 60.605 57.895 0.00 0.00 0.00 4.37
2313 3073 1.153989 TTTGGGACGGCAATGGGAA 59.846 52.632 0.00 0.00 0.00 3.97
2314 3074 0.897863 TTTGGGACGGCAATGGGAAG 60.898 55.000 0.00 0.00 0.00 3.46
2315 3075 2.440247 GGGACGGCAATGGGAAGG 60.440 66.667 0.00 0.00 0.00 3.46
2316 3076 3.140814 GGACGGCAATGGGAAGGC 61.141 66.667 0.00 0.00 0.00 4.35
2317 3077 2.361104 GACGGCAATGGGAAGGCA 60.361 61.111 0.00 0.00 0.00 4.75
2318 3078 2.676471 ACGGCAATGGGAAGGCAC 60.676 61.111 0.00 0.00 0.00 5.01
2319 3079 2.676121 CGGCAATGGGAAGGCACA 60.676 61.111 0.00 0.00 0.00 4.57
2320 3080 2.053865 CGGCAATGGGAAGGCACAT 61.054 57.895 0.00 0.00 40.72 3.21
2321 3081 1.518774 GGCAATGGGAAGGCACATG 59.481 57.895 0.00 0.00 37.08 3.21
2322 3082 1.259840 GGCAATGGGAAGGCACATGT 61.260 55.000 0.00 0.00 37.08 3.21
2323 3083 0.609662 GCAATGGGAAGGCACATGTT 59.390 50.000 0.00 0.00 37.08 2.71
2324 3084 1.404583 GCAATGGGAAGGCACATGTTC 60.405 52.381 0.00 0.00 37.08 3.18
2325 3085 1.135315 CAATGGGAAGGCACATGTTCG 60.135 52.381 0.00 0.00 37.08 3.95
2326 3086 0.680921 ATGGGAAGGCACATGTTCGG 60.681 55.000 0.00 0.00 36.60 4.30
2327 3087 1.303317 GGGAAGGCACATGTTCGGT 60.303 57.895 0.00 0.00 0.00 4.69
2328 3088 0.893727 GGGAAGGCACATGTTCGGTT 60.894 55.000 0.00 0.00 0.00 4.44
2329 3089 0.240945 GGAAGGCACATGTTCGGTTG 59.759 55.000 0.00 0.00 0.00 3.77
2330 3090 0.240945 GAAGGCACATGTTCGGTTGG 59.759 55.000 0.00 0.00 0.00 3.77
2331 3091 1.178534 AAGGCACATGTTCGGTTGGG 61.179 55.000 0.00 0.00 0.00 4.12
2332 3092 1.901464 GGCACATGTTCGGTTGGGT 60.901 57.895 0.00 0.00 0.00 4.51
2333 3093 1.579429 GCACATGTTCGGTTGGGTC 59.421 57.895 0.00 0.00 0.00 4.46
2334 3094 1.866237 CACATGTTCGGTTGGGTCG 59.134 57.895 0.00 0.00 0.00 4.79
2335 3095 0.882927 CACATGTTCGGTTGGGTCGT 60.883 55.000 0.00 0.00 0.00 4.34
2336 3096 0.179040 ACATGTTCGGTTGGGTCGTT 60.179 50.000 0.00 0.00 0.00 3.85
2337 3097 0.948678 CATGTTCGGTTGGGTCGTTT 59.051 50.000 0.00 0.00 0.00 3.60
2338 3098 0.948678 ATGTTCGGTTGGGTCGTTTG 59.051 50.000 0.00 0.00 0.00 2.93
2339 3099 1.096386 TGTTCGGTTGGGTCGTTTGG 61.096 55.000 0.00 0.00 0.00 3.28
2340 3100 1.526455 TTCGGTTGGGTCGTTTGGG 60.526 57.895 0.00 0.00 0.00 4.12
2341 3101 2.203238 CGGTTGGGTCGTTTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
2342 3102 1.824760 CGGTTGGGTCGTTTGGGTT 60.825 57.895 0.00 0.00 0.00 4.11
2343 3103 1.737201 GGTTGGGTCGTTTGGGTTG 59.263 57.895 0.00 0.00 0.00 3.77
2344 3104 1.038681 GGTTGGGTCGTTTGGGTTGT 61.039 55.000 0.00 0.00 0.00 3.32
2345 3105 0.382873 GTTGGGTCGTTTGGGTTGTC 59.617 55.000 0.00 0.00 0.00 3.18
2346 3106 0.752376 TTGGGTCGTTTGGGTTGTCC 60.752 55.000 0.00 0.00 0.00 4.02
2347 3107 1.152922 GGGTCGTTTGGGTTGTCCA 60.153 57.895 0.00 0.00 45.43 4.02
2348 3108 0.538746 GGGTCGTTTGGGTTGTCCAT 60.539 55.000 0.00 0.00 46.52 3.41
2349 3109 0.596082 GGTCGTTTGGGTTGTCCATG 59.404 55.000 0.00 0.00 46.52 3.66
2350 3110 0.039527 GTCGTTTGGGTTGTCCATGC 60.040 55.000 0.00 0.00 46.52 4.06
2351 3111 1.081509 CGTTTGGGTTGTCCATGCG 60.082 57.895 0.00 0.00 46.52 4.73
2352 3112 1.288752 GTTTGGGTTGTCCATGCGG 59.711 57.895 0.00 0.00 46.52 5.69
2353 3113 2.569354 TTTGGGTTGTCCATGCGGC 61.569 57.895 0.00 0.00 46.52 6.53
2356 3116 2.988684 GGTTGTCCATGCGGCCAA 60.989 61.111 2.24 0.00 0.00 4.52
2357 3117 2.569354 GGTTGTCCATGCGGCCAAA 61.569 57.895 2.24 0.00 0.00 3.28
2358 3118 1.080569 GTTGTCCATGCGGCCAAAG 60.081 57.895 2.24 0.00 0.00 2.77
2359 3119 2.929903 TTGTCCATGCGGCCAAAGC 61.930 57.895 2.24 0.00 38.76 3.51
2360 3120 4.481112 GTCCATGCGGCCAAAGCG 62.481 66.667 2.24 0.00 41.24 4.68
2377 3137 3.583086 GCGGCCGCACCCTAAATC 61.583 66.667 43.55 11.09 41.49 2.17
2378 3138 2.124901 CGGCCGCACCCTAAATCA 60.125 61.111 14.67 0.00 33.26 2.57
2379 3139 1.525995 CGGCCGCACCCTAAATCAT 60.526 57.895 14.67 0.00 33.26 2.45
2380 3140 1.785041 CGGCCGCACCCTAAATCATG 61.785 60.000 14.67 0.00 33.26 3.07
2381 3141 0.751643 GGCCGCACCCTAAATCATGT 60.752 55.000 0.00 0.00 0.00 3.21
2382 3142 0.663153 GCCGCACCCTAAATCATGTC 59.337 55.000 0.00 0.00 0.00 3.06
2383 3143 1.308998 CCGCACCCTAAATCATGTCC 58.691 55.000 0.00 0.00 0.00 4.02
2384 3144 0.937304 CGCACCCTAAATCATGTCCG 59.063 55.000 0.00 0.00 0.00 4.79
2385 3145 1.308998 GCACCCTAAATCATGTCCGG 58.691 55.000 0.00 0.00 0.00 5.14
2386 3146 1.967319 CACCCTAAATCATGTCCGGG 58.033 55.000 0.00 0.00 37.70 5.73
2387 3147 0.843984 ACCCTAAATCATGTCCGGGG 59.156 55.000 0.00 10.73 35.99 5.73
2388 3148 0.537371 CCCTAAATCATGTCCGGGGC 60.537 60.000 0.00 0.00 0.00 5.80
2389 3149 0.884704 CCTAAATCATGTCCGGGGCG 60.885 60.000 0.00 0.00 0.00 6.13
2400 3160 2.184836 CGGGGCGGACGTGATTAA 59.815 61.111 0.00 0.00 0.00 1.40
2401 3161 1.448189 CGGGGCGGACGTGATTAAA 60.448 57.895 0.00 0.00 0.00 1.52
2402 3162 1.020333 CGGGGCGGACGTGATTAAAA 61.020 55.000 0.00 0.00 0.00 1.52
2403 3163 1.166989 GGGGCGGACGTGATTAAAAA 58.833 50.000 0.00 0.00 0.00 1.94
2472 3232 9.952030 AACATAAACATAATTTGGGGTTTTAGG 57.048 29.630 0.00 0.00 35.33 2.69
2473 3233 8.044309 ACATAAACATAATTTGGGGTTTTAGGC 58.956 33.333 0.00 0.00 35.33 3.93
2474 3234 5.429681 AACATAATTTGGGGTTTTAGGCC 57.570 39.130 0.00 0.00 0.00 5.19
2475 3235 3.449377 ACATAATTTGGGGTTTTAGGCCG 59.551 43.478 0.00 0.00 0.00 6.13
2476 3236 0.611200 AATTTGGGGTTTTAGGCCGC 59.389 50.000 0.00 0.00 39.13 6.53
2477 3237 0.543174 ATTTGGGGTTTTAGGCCGCA 60.543 50.000 0.00 0.00 45.36 5.69
2478 3238 2.521479 TGGGGTTTTAGGCCGCAA 59.479 55.556 0.00 0.00 44.32 4.85
2479 3239 1.152525 TGGGGTTTTAGGCCGCAAA 60.153 52.632 0.00 0.00 44.32 3.68
2480 3240 0.759436 TGGGGTTTTAGGCCGCAAAA 60.759 50.000 12.62 12.62 44.32 2.44
2481 3241 0.037697 GGGGTTTTAGGCCGCAAAAG 60.038 55.000 15.93 0.00 38.62 2.27
2482 3242 0.037697 GGGTTTTAGGCCGCAAAAGG 60.038 55.000 15.93 0.00 0.00 3.11
2483 3243 0.037697 GGTTTTAGGCCGCAAAAGGG 60.038 55.000 15.93 0.00 0.00 3.95
2489 3249 4.377708 GCCGCAAAAGGGCCCAAG 62.378 66.667 27.56 11.66 44.97 3.61
2490 3250 2.917227 CCGCAAAAGGGCCCAAGT 60.917 61.111 27.56 5.51 0.00 3.16
2491 3251 2.506957 CCGCAAAAGGGCCCAAGTT 61.507 57.895 27.56 12.43 0.00 2.66
2492 3252 1.006220 CGCAAAAGGGCCCAAGTTC 60.006 57.895 27.56 9.00 0.00 3.01
2493 3253 1.463553 CGCAAAAGGGCCCAAGTTCT 61.464 55.000 27.56 0.00 0.00 3.01
2494 3254 1.627864 GCAAAAGGGCCCAAGTTCTA 58.372 50.000 27.56 0.00 0.00 2.10
2495 3255 1.272490 GCAAAAGGGCCCAAGTTCTAC 59.728 52.381 27.56 0.88 0.00 2.59
2496 3256 1.539827 CAAAAGGGCCCAAGTTCTACG 59.460 52.381 27.56 0.00 0.00 3.51
2497 3257 1.061546 AAAGGGCCCAAGTTCTACGA 58.938 50.000 27.56 0.00 0.00 3.43
2498 3258 1.286248 AAGGGCCCAAGTTCTACGAT 58.714 50.000 27.56 0.00 0.00 3.73
2499 3259 0.831307 AGGGCCCAAGTTCTACGATC 59.169 55.000 27.56 0.00 0.00 3.69
2500 3260 0.179054 GGGCCCAAGTTCTACGATCC 60.179 60.000 19.95 0.00 0.00 3.36
2501 3261 0.539986 GGCCCAAGTTCTACGATCCA 59.460 55.000 0.00 0.00 0.00 3.41
2502 3262 1.653151 GCCCAAGTTCTACGATCCAC 58.347 55.000 0.00 0.00 0.00 4.02
2503 3263 1.066430 GCCCAAGTTCTACGATCCACA 60.066 52.381 0.00 0.00 0.00 4.17
2504 3264 2.614481 GCCCAAGTTCTACGATCCACAA 60.614 50.000 0.00 0.00 0.00 3.33
2505 3265 3.000727 CCCAAGTTCTACGATCCACAAC 58.999 50.000 0.00 0.00 0.00 3.32
2506 3266 3.000727 CCAAGTTCTACGATCCACAACC 58.999 50.000 0.00 0.00 0.00 3.77
2507 3267 3.556213 CCAAGTTCTACGATCCACAACCA 60.556 47.826 0.00 0.00 0.00 3.67
2508 3268 4.253685 CAAGTTCTACGATCCACAACCAT 58.746 43.478 0.00 0.00 0.00 3.55
2509 3269 5.416083 CAAGTTCTACGATCCACAACCATA 58.584 41.667 0.00 0.00 0.00 2.74
2510 3270 5.670792 AGTTCTACGATCCACAACCATAA 57.329 39.130 0.00 0.00 0.00 1.90
2511 3271 6.235231 AGTTCTACGATCCACAACCATAAT 57.765 37.500 0.00 0.00 0.00 1.28
2512 3272 6.650120 AGTTCTACGATCCACAACCATAATT 58.350 36.000 0.00 0.00 0.00 1.40
2513 3273 7.788026 AGTTCTACGATCCACAACCATAATTA 58.212 34.615 0.00 0.00 0.00 1.40
2514 3274 8.262227 AGTTCTACGATCCACAACCATAATTAA 58.738 33.333 0.00 0.00 0.00 1.40
2515 3275 8.333186 GTTCTACGATCCACAACCATAATTAAC 58.667 37.037 0.00 0.00 0.00 2.01
2516 3276 7.557724 TCTACGATCCACAACCATAATTAACA 58.442 34.615 0.00 0.00 0.00 2.41
2517 3277 8.208224 TCTACGATCCACAACCATAATTAACAT 58.792 33.333 0.00 0.00 0.00 2.71
2518 3278 9.483916 CTACGATCCACAACCATAATTAACATA 57.516 33.333 0.00 0.00 0.00 2.29
2519 3279 8.740123 ACGATCCACAACCATAATTAACATAA 57.260 30.769 0.00 0.00 0.00 1.90
2520 3280 9.179909 ACGATCCACAACCATAATTAACATAAA 57.820 29.630 0.00 0.00 0.00 1.40
2552 3312 3.906879 AAAAACCGCCGCCCACAC 61.907 61.111 0.00 0.00 0.00 3.82
2570 3330 3.112709 GCTTCTGGCGTGTCCGTC 61.113 66.667 0.00 0.00 39.72 4.79
2571 3331 2.805353 CTTCTGGCGTGTCCGTCG 60.805 66.667 0.00 0.00 43.03 5.12
2572 3332 3.263503 CTTCTGGCGTGTCCGTCGA 62.264 63.158 0.00 0.00 43.03 4.20
2573 3333 2.543687 CTTCTGGCGTGTCCGTCGAT 62.544 60.000 0.00 0.00 43.03 3.59
2574 3334 2.812542 TTCTGGCGTGTCCGTCGATG 62.813 60.000 0.00 0.00 43.03 3.84
2578 3338 4.771356 CGTGTCCGTCGATGCCGT 62.771 66.667 0.00 0.00 37.05 5.68
2579 3339 3.179265 GTGTCCGTCGATGCCGTG 61.179 66.667 0.00 0.00 37.05 4.94
2585 3345 3.188786 GTCGATGCCGTGCCTGTC 61.189 66.667 0.00 0.00 37.05 3.51
2586 3346 4.794439 TCGATGCCGTGCCTGTCG 62.794 66.667 8.18 8.18 37.05 4.35
2594 3354 3.112709 GTGCCTGTCGCCGTCTTC 61.113 66.667 0.00 0.00 36.24 2.87
2595 3355 3.303135 TGCCTGTCGCCGTCTTCT 61.303 61.111 0.00 0.00 36.24 2.85
2596 3356 2.507324 GCCTGTCGCCGTCTTCTC 60.507 66.667 0.00 0.00 0.00 2.87
2597 3357 2.962569 CCTGTCGCCGTCTTCTCA 59.037 61.111 0.00 0.00 0.00 3.27
2598 3358 1.153939 CCTGTCGCCGTCTTCTCAG 60.154 63.158 0.00 0.00 0.00 3.35
2599 3359 1.581954 CTGTCGCCGTCTTCTCAGT 59.418 57.895 0.00 0.00 0.00 3.41
2600 3360 0.730834 CTGTCGCCGTCTTCTCAGTG 60.731 60.000 0.00 0.00 0.00 3.66
2601 3361 1.170290 TGTCGCCGTCTTCTCAGTGA 61.170 55.000 0.00 0.00 0.00 3.41
2602 3362 0.171455 GTCGCCGTCTTCTCAGTGAT 59.829 55.000 0.00 0.00 0.00 3.06
2603 3363 0.452184 TCGCCGTCTTCTCAGTGATC 59.548 55.000 0.00 0.00 0.00 2.92
2604 3364 0.863538 CGCCGTCTTCTCAGTGATCG 60.864 60.000 0.00 0.00 0.00 3.69
2605 3365 1.142778 GCCGTCTTCTCAGTGATCGC 61.143 60.000 0.00 0.00 0.00 4.58
2606 3366 0.453793 CCGTCTTCTCAGTGATCGCT 59.546 55.000 2.02 2.02 0.00 4.93
2607 3367 1.543614 CGTCTTCTCAGTGATCGCTG 58.456 55.000 27.01 27.01 37.81 5.18
2608 3368 1.135546 CGTCTTCTCAGTGATCGCTGT 60.136 52.381 30.17 0.00 37.70 4.40
2609 3369 2.669670 CGTCTTCTCAGTGATCGCTGTT 60.670 50.000 30.17 0.00 37.70 3.16
2610 3370 2.665537 GTCTTCTCAGTGATCGCTGTTG 59.334 50.000 30.17 23.85 37.70 3.33
2611 3371 2.297315 TCTTCTCAGTGATCGCTGTTGT 59.703 45.455 30.17 0.00 37.70 3.32
2612 3372 2.354109 TCTCAGTGATCGCTGTTGTC 57.646 50.000 30.17 0.00 37.70 3.18
2613 3373 1.889170 TCTCAGTGATCGCTGTTGTCT 59.111 47.619 30.17 0.00 37.70 3.41
2614 3374 2.297315 TCTCAGTGATCGCTGTTGTCTT 59.703 45.455 30.17 0.00 37.70 3.01
2615 3375 2.665537 CTCAGTGATCGCTGTTGTCTTC 59.334 50.000 30.17 0.00 37.70 2.87
2616 3376 1.388093 CAGTGATCGCTGTTGTCTTCG 59.612 52.381 25.11 0.00 0.00 3.79
2617 3377 1.000163 AGTGATCGCTGTTGTCTTCGT 60.000 47.619 8.28 0.00 0.00 3.85
2618 3378 1.387084 GTGATCGCTGTTGTCTTCGTC 59.613 52.381 0.00 0.00 0.00 4.20
2619 3379 0.635731 GATCGCTGTTGTCTTCGTCG 59.364 55.000 0.00 0.00 0.00 5.12
2620 3380 0.039437 ATCGCTGTTGTCTTCGTCGT 60.039 50.000 0.00 0.00 0.00 4.34
2621 3381 0.659417 TCGCTGTTGTCTTCGTCGTC 60.659 55.000 0.00 0.00 0.00 4.20
2622 3382 0.933047 CGCTGTTGTCTTCGTCGTCA 60.933 55.000 0.00 0.00 0.00 4.35
2623 3383 0.503117 GCTGTTGTCTTCGTCGTCAC 59.497 55.000 0.00 0.00 0.00 3.67
2624 3384 1.864435 GCTGTTGTCTTCGTCGTCACT 60.864 52.381 0.00 0.00 0.00 3.41
2625 3385 1.781429 CTGTTGTCTTCGTCGTCACTG 59.219 52.381 0.00 0.00 0.00 3.66
2626 3386 1.402613 TGTTGTCTTCGTCGTCACTGA 59.597 47.619 0.00 0.00 0.00 3.41
2627 3387 1.779724 GTTGTCTTCGTCGTCACTGAC 59.220 52.381 0.00 0.00 35.49 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.979469 GGCGATGAATACGACGATGAG 59.021 52.381 0.00 0.00 0.00 2.90
1 2 2.046283 GGCGATGAATACGACGATGA 57.954 50.000 0.00 0.00 0.00 2.92
6 7 1.121240 CTGACGGCGATGAATACGAC 58.879 55.000 16.62 0.00 35.25 4.34
7 8 0.594028 GCTGACGGCGATGAATACGA 60.594 55.000 16.62 0.00 0.00 3.43
8 9 0.869880 TGCTGACGGCGATGAATACG 60.870 55.000 16.62 0.00 45.43 3.06
9 10 0.855349 CTGCTGACGGCGATGAATAC 59.145 55.000 16.62 0.00 45.43 1.89
10 11 0.875908 GCTGCTGACGGCGATGAATA 60.876 55.000 16.62 0.00 45.43 1.75
11 12 2.176273 GCTGCTGACGGCGATGAAT 61.176 57.895 16.62 0.00 45.43 2.57
12 13 2.815211 GCTGCTGACGGCGATGAA 60.815 61.111 16.62 0.00 45.43 2.57
19 20 0.027194 CGATGATTTGCTGCTGACGG 59.973 55.000 0.00 0.00 0.00 4.79
20 21 0.588233 GCGATGATTTGCTGCTGACG 60.588 55.000 0.00 0.00 0.00 4.35
21 22 0.248377 GGCGATGATTTGCTGCTGAC 60.248 55.000 0.00 0.00 32.36 3.51
22 23 0.677414 TGGCGATGATTTGCTGCTGA 60.677 50.000 0.00 0.00 32.36 4.26
23 24 0.171679 TTGGCGATGATTTGCTGCTG 59.828 50.000 0.00 0.00 32.36 4.41
24 25 0.171903 GTTGGCGATGATTTGCTGCT 59.828 50.000 0.00 0.00 32.36 4.24
25 26 0.109179 TGTTGGCGATGATTTGCTGC 60.109 50.000 0.00 0.00 32.36 5.25
26 27 2.456989 GATGTTGGCGATGATTTGCTG 58.543 47.619 0.00 0.00 32.36 4.41
27 28 1.064505 CGATGTTGGCGATGATTTGCT 59.935 47.619 0.00 0.00 32.36 3.91
28 29 1.202177 ACGATGTTGGCGATGATTTGC 60.202 47.619 0.00 0.00 0.00 3.68
29 30 2.095692 TGACGATGTTGGCGATGATTTG 59.904 45.455 0.00 0.00 0.00 2.32
30 31 2.355197 TGACGATGTTGGCGATGATTT 58.645 42.857 0.00 0.00 0.00 2.17
31 32 2.022764 TGACGATGTTGGCGATGATT 57.977 45.000 0.00 0.00 0.00 2.57
32 33 2.138320 GATGACGATGTTGGCGATGAT 58.862 47.619 0.00 0.00 0.00 2.45
33 34 1.134848 TGATGACGATGTTGGCGATGA 60.135 47.619 0.00 0.00 0.00 2.92
34 35 1.289276 TGATGACGATGTTGGCGATG 58.711 50.000 0.00 0.00 0.00 3.84
35 36 1.665679 GTTGATGACGATGTTGGCGAT 59.334 47.619 0.00 0.00 0.00 4.58
36 37 1.075542 GTTGATGACGATGTTGGCGA 58.924 50.000 0.00 0.00 0.00 5.54
37 38 0.795698 TGTTGATGACGATGTTGGCG 59.204 50.000 0.00 0.00 0.00 5.69
38 39 1.806542 AGTGTTGATGACGATGTTGGC 59.193 47.619 0.00 0.00 0.00 4.52
39 40 2.807967 ACAGTGTTGATGACGATGTTGG 59.192 45.455 0.00 0.00 0.00 3.77
40 41 3.422214 CGACAGTGTTGATGACGATGTTG 60.422 47.826 4.29 0.00 37.91 3.33
41 42 2.731451 CGACAGTGTTGATGACGATGTT 59.269 45.455 4.29 0.00 37.91 2.71
42 43 2.328473 CGACAGTGTTGATGACGATGT 58.672 47.619 4.29 0.00 37.91 3.06
43 44 1.059692 GCGACAGTGTTGATGACGATG 59.940 52.381 15.07 0.00 37.91 3.84
44 45 1.336795 TGCGACAGTGTTGATGACGAT 60.337 47.619 15.07 0.00 37.91 3.73
45 46 0.031449 TGCGACAGTGTTGATGACGA 59.969 50.000 15.07 0.00 37.91 4.20
46 47 0.161658 GTGCGACAGTGTTGATGACG 59.838 55.000 15.07 5.06 38.54 4.35
47 48 0.512952 GGTGCGACAGTGTTGATGAC 59.487 55.000 15.07 6.91 0.00 3.06
48 49 0.602638 GGGTGCGACAGTGTTGATGA 60.603 55.000 15.07 0.00 0.00 2.92
49 50 0.884259 TGGGTGCGACAGTGTTGATG 60.884 55.000 15.07 0.00 0.00 3.07
50 51 0.036732 ATGGGTGCGACAGTGTTGAT 59.963 50.000 15.07 0.00 0.00 2.57
51 52 0.682292 TATGGGTGCGACAGTGTTGA 59.318 50.000 15.07 0.00 0.00 3.18
52 53 1.518325 TTATGGGTGCGACAGTGTTG 58.482 50.000 6.11 6.11 0.00 3.33
53 54 2.489938 ATTATGGGTGCGACAGTGTT 57.510 45.000 0.00 0.00 0.00 3.32
54 55 2.741878 GCTATTATGGGTGCGACAGTGT 60.742 50.000 0.00 0.00 0.00 3.55
55 56 1.867233 GCTATTATGGGTGCGACAGTG 59.133 52.381 0.00 0.00 0.00 3.66
56 57 1.762957 AGCTATTATGGGTGCGACAGT 59.237 47.619 0.00 0.00 0.00 3.55
57 58 2.533266 AGCTATTATGGGTGCGACAG 57.467 50.000 0.00 0.00 0.00 3.51
58 59 3.724374 GTTAGCTATTATGGGTGCGACA 58.276 45.455 0.00 0.00 0.00 4.35
59 60 2.729882 CGTTAGCTATTATGGGTGCGAC 59.270 50.000 0.00 0.00 0.00 5.19
60 61 2.624364 TCGTTAGCTATTATGGGTGCGA 59.376 45.455 0.00 5.56 0.00 5.10
61 62 3.021269 TCGTTAGCTATTATGGGTGCG 57.979 47.619 0.00 0.00 0.00 5.34
62 63 4.566004 TGATCGTTAGCTATTATGGGTGC 58.434 43.478 0.00 0.00 0.00 5.01
63 64 5.784177 ACTGATCGTTAGCTATTATGGGTG 58.216 41.667 0.00 0.00 0.00 4.61
64 65 6.349115 CGTACTGATCGTTAGCTATTATGGGT 60.349 42.308 0.00 0.00 0.00 4.51
65 66 6.028368 CGTACTGATCGTTAGCTATTATGGG 58.972 44.000 0.00 0.00 0.00 4.00
66 67 6.609533 ACGTACTGATCGTTAGCTATTATGG 58.390 40.000 0.00 0.00 38.38 2.74
67 68 6.741811 GGACGTACTGATCGTTAGCTATTATG 59.258 42.308 0.00 0.00 41.64 1.90
68 69 6.429078 TGGACGTACTGATCGTTAGCTATTAT 59.571 38.462 0.00 0.00 41.64 1.28
69 70 5.759763 TGGACGTACTGATCGTTAGCTATTA 59.240 40.000 0.00 0.00 41.64 0.98
70 71 4.577693 TGGACGTACTGATCGTTAGCTATT 59.422 41.667 0.00 0.00 41.64 1.73
71 72 4.132336 TGGACGTACTGATCGTTAGCTAT 58.868 43.478 0.00 0.00 41.64 2.97
72 73 3.534554 TGGACGTACTGATCGTTAGCTA 58.465 45.455 0.00 0.00 41.64 3.32
73 74 2.362736 TGGACGTACTGATCGTTAGCT 58.637 47.619 0.00 0.00 41.64 3.32
74 75 2.838386 TGGACGTACTGATCGTTAGC 57.162 50.000 0.00 0.00 41.64 3.09
75 76 4.087510 TGTTGGACGTACTGATCGTTAG 57.912 45.455 0.00 0.00 41.64 2.34
76 77 4.439153 GGATGTTGGACGTACTGATCGTTA 60.439 45.833 0.00 0.00 41.64 3.18
77 78 3.508762 GATGTTGGACGTACTGATCGTT 58.491 45.455 0.00 0.00 41.64 3.85
78 79 2.159282 GGATGTTGGACGTACTGATCGT 60.159 50.000 0.00 0.00 44.27 3.73
79 80 2.099263 AGGATGTTGGACGTACTGATCG 59.901 50.000 0.00 0.00 24.12 3.69
80 81 3.381908 AGAGGATGTTGGACGTACTGATC 59.618 47.826 0.00 0.00 25.66 2.92
81 82 3.131223 CAGAGGATGTTGGACGTACTGAT 59.869 47.826 0.00 0.00 25.66 2.90
82 83 2.492088 CAGAGGATGTTGGACGTACTGA 59.508 50.000 0.00 0.00 25.66 3.41
83 84 2.231478 ACAGAGGATGTTGGACGTACTG 59.769 50.000 0.00 0.00 39.96 2.74
84 85 2.526432 ACAGAGGATGTTGGACGTACT 58.474 47.619 0.00 0.00 39.96 2.73
94 95 4.630644 AACAGACATGAACAGAGGATGT 57.369 40.909 0.00 0.00 46.97 3.06
95 96 5.243981 AGAAACAGACATGAACAGAGGATG 58.756 41.667 0.00 0.00 0.00 3.51
96 97 5.495926 AGAAACAGACATGAACAGAGGAT 57.504 39.130 0.00 0.00 0.00 3.24
97 98 4.963318 AGAAACAGACATGAACAGAGGA 57.037 40.909 0.00 0.00 0.00 3.71
98 99 5.541845 TGTAGAAACAGACATGAACAGAGG 58.458 41.667 0.00 0.00 0.00 3.69
112 113 6.218019 ACACGTAACAATAGCTGTAGAAACA 58.782 36.000 0.00 0.00 37.23 2.83
113 114 6.701432 ACACGTAACAATAGCTGTAGAAAC 57.299 37.500 0.00 0.00 37.23 2.78
114 115 7.569297 CAAACACGTAACAATAGCTGTAGAAA 58.431 34.615 0.00 0.00 37.23 2.52
115 116 6.347079 GCAAACACGTAACAATAGCTGTAGAA 60.347 38.462 0.00 0.00 37.23 2.10
116 117 5.119588 GCAAACACGTAACAATAGCTGTAGA 59.880 40.000 0.00 0.00 37.23 2.59
117 118 5.120208 AGCAAACACGTAACAATAGCTGTAG 59.880 40.000 0.00 0.00 37.23 2.74
118 119 4.992319 AGCAAACACGTAACAATAGCTGTA 59.008 37.500 0.00 0.00 37.23 2.74
119 120 3.813166 AGCAAACACGTAACAATAGCTGT 59.187 39.130 0.00 0.00 41.27 4.40
120 121 4.151070 CAGCAAACACGTAACAATAGCTG 58.849 43.478 0.00 0.00 40.57 4.24
121 122 3.364964 GCAGCAAACACGTAACAATAGCT 60.365 43.478 0.00 0.00 0.00 3.32
122 123 2.908626 GCAGCAAACACGTAACAATAGC 59.091 45.455 0.00 0.00 0.00 2.97
123 124 4.151070 CAGCAGCAAACACGTAACAATAG 58.849 43.478 0.00 0.00 0.00 1.73
124 125 3.562141 ACAGCAGCAAACACGTAACAATA 59.438 39.130 0.00 0.00 0.00 1.90
125 126 2.357637 ACAGCAGCAAACACGTAACAAT 59.642 40.909 0.00 0.00 0.00 2.71
126 127 1.740585 ACAGCAGCAAACACGTAACAA 59.259 42.857 0.00 0.00 0.00 2.83
127 128 1.374560 ACAGCAGCAAACACGTAACA 58.625 45.000 0.00 0.00 0.00 2.41
128 129 2.468532 AACAGCAGCAAACACGTAAC 57.531 45.000 0.00 0.00 0.00 2.50
129 130 3.608241 GCATAACAGCAGCAAACACGTAA 60.608 43.478 0.00 0.00 0.00 3.18
130 131 2.095969 GCATAACAGCAGCAAACACGTA 60.096 45.455 0.00 0.00 0.00 3.57
131 132 1.334960 GCATAACAGCAGCAAACACGT 60.335 47.619 0.00 0.00 0.00 4.49
132 133 1.330306 GCATAACAGCAGCAAACACG 58.670 50.000 0.00 0.00 0.00 4.49
133 134 2.420628 TGCATAACAGCAGCAAACAC 57.579 45.000 0.00 0.00 40.11 3.32
151 152 6.369005 CAAACTAGAAGAACAGCAAGACATG 58.631 40.000 0.00 0.00 0.00 3.21
152 153 5.049129 GCAAACTAGAAGAACAGCAAGACAT 60.049 40.000 0.00 0.00 0.00 3.06
153 154 4.273480 GCAAACTAGAAGAACAGCAAGACA 59.727 41.667 0.00 0.00 0.00 3.41
154 155 4.513318 AGCAAACTAGAAGAACAGCAAGAC 59.487 41.667 0.00 0.00 0.00 3.01
155 156 4.708177 AGCAAACTAGAAGAACAGCAAGA 58.292 39.130 0.00 0.00 0.00 3.02
168 169 7.199541 AGCATGCAATAATCTAGCAAACTAG 57.800 36.000 21.98 0.00 46.30 2.57
169 170 7.933577 ACTAGCATGCAATAATCTAGCAAACTA 59.066 33.333 21.98 0.00 42.15 2.24
170 171 6.769822 ACTAGCATGCAATAATCTAGCAAACT 59.230 34.615 21.98 0.00 42.15 2.66
171 172 6.963796 ACTAGCATGCAATAATCTAGCAAAC 58.036 36.000 21.98 0.00 42.15 2.93
172 173 8.853077 ATACTAGCATGCAATAATCTAGCAAA 57.147 30.769 21.98 1.19 42.15 3.68
173 174 8.316946 AGATACTAGCATGCAATAATCTAGCAA 58.683 33.333 21.98 3.56 42.15 3.91
174 175 7.845037 AGATACTAGCATGCAATAATCTAGCA 58.155 34.615 21.98 1.80 43.14 3.49
175 176 8.715191 AAGATACTAGCATGCAATAATCTAGC 57.285 34.615 21.98 1.93 32.23 3.42
178 179 9.790344 AGAAAAGATACTAGCATGCAATAATCT 57.210 29.630 21.98 18.09 0.00 2.40
182 183 9.698309 GACTAGAAAAGATACTAGCATGCAATA 57.302 33.333 21.98 9.23 39.47 1.90
183 184 8.206867 TGACTAGAAAAGATACTAGCATGCAAT 58.793 33.333 21.98 7.51 39.47 3.56
184 185 7.555965 TGACTAGAAAAGATACTAGCATGCAA 58.444 34.615 21.98 2.20 39.47 4.08
185 186 7.112452 TGACTAGAAAAGATACTAGCATGCA 57.888 36.000 21.98 5.01 39.47 3.96
186 187 8.600449 AATGACTAGAAAAGATACTAGCATGC 57.400 34.615 10.51 10.51 39.47 4.06
230 231 9.699410 TGTTGGAATATTAGGAAAGTTCATGAT 57.301 29.630 0.00 0.00 0.00 2.45
231 232 9.699410 ATGTTGGAATATTAGGAAAGTTCATGA 57.301 29.630 0.00 0.00 0.00 3.07
232 233 9.740239 CATGTTGGAATATTAGGAAAGTTCATG 57.260 33.333 0.00 0.00 0.00 3.07
233 234 8.416329 GCATGTTGGAATATTAGGAAAGTTCAT 58.584 33.333 0.00 0.00 0.00 2.57
234 235 7.615365 AGCATGTTGGAATATTAGGAAAGTTCA 59.385 33.333 0.00 0.00 0.00 3.18
235 236 8.000780 AGCATGTTGGAATATTAGGAAAGTTC 57.999 34.615 0.00 0.00 0.00 3.01
236 237 7.961326 AGCATGTTGGAATATTAGGAAAGTT 57.039 32.000 0.00 0.00 0.00 2.66
237 238 7.615365 TCAAGCATGTTGGAATATTAGGAAAGT 59.385 33.333 0.00 0.00 0.00 2.66
238 239 7.999679 TCAAGCATGTTGGAATATTAGGAAAG 58.000 34.615 0.00 0.00 0.00 2.62
239 240 7.068593 CCTCAAGCATGTTGGAATATTAGGAAA 59.931 37.037 0.00 0.00 0.00 3.13
240 241 6.547141 CCTCAAGCATGTTGGAATATTAGGAA 59.453 38.462 0.00 0.00 0.00 3.36
241 242 6.064060 CCTCAAGCATGTTGGAATATTAGGA 58.936 40.000 0.00 0.00 0.00 2.94
242 243 5.242393 CCCTCAAGCATGTTGGAATATTAGG 59.758 44.000 0.00 0.00 0.00 2.69
243 244 5.829924 ACCCTCAAGCATGTTGGAATATTAG 59.170 40.000 6.52 0.00 0.00 1.73
244 245 5.765510 ACCCTCAAGCATGTTGGAATATTA 58.234 37.500 6.52 0.00 0.00 0.98
245 246 4.613437 ACCCTCAAGCATGTTGGAATATT 58.387 39.130 6.52 0.00 0.00 1.28
246 247 4.255510 ACCCTCAAGCATGTTGGAATAT 57.744 40.909 6.52 0.00 0.00 1.28
247 248 3.737559 ACCCTCAAGCATGTTGGAATA 57.262 42.857 6.52 0.00 0.00 1.75
248 249 2.610438 ACCCTCAAGCATGTTGGAAT 57.390 45.000 6.52 0.00 0.00 3.01
249 250 2.790433 GTACCCTCAAGCATGTTGGAA 58.210 47.619 6.52 0.00 0.00 3.53
250 251 1.338674 CGTACCCTCAAGCATGTTGGA 60.339 52.381 6.52 0.00 0.00 3.53
251 252 1.086696 CGTACCCTCAAGCATGTTGG 58.913 55.000 0.00 0.00 0.00 3.77
252 253 1.086696 CCGTACCCTCAAGCATGTTG 58.913 55.000 0.00 0.00 0.00 3.33
253 254 0.981183 TCCGTACCCTCAAGCATGTT 59.019 50.000 0.00 0.00 0.00 2.71
254 255 1.204146 ATCCGTACCCTCAAGCATGT 58.796 50.000 0.00 0.00 0.00 3.21
255 256 2.365617 ACTATCCGTACCCTCAAGCATG 59.634 50.000 0.00 0.00 0.00 4.06
256 257 2.679082 ACTATCCGTACCCTCAAGCAT 58.321 47.619 0.00 0.00 0.00 3.79
257 258 2.154567 ACTATCCGTACCCTCAAGCA 57.845 50.000 0.00 0.00 0.00 3.91
258 259 2.483188 CCAACTATCCGTACCCTCAAGC 60.483 54.545 0.00 0.00 0.00 4.01
259 260 2.483188 GCCAACTATCCGTACCCTCAAG 60.483 54.545 0.00 0.00 0.00 3.02
347 375 5.247507 TGCATCGAATTGGGACTTTATTG 57.752 39.130 0.00 0.00 0.00 1.90
368 396 6.183360 TGCGGATGTTTTCCTTTTTCTTTTTG 60.183 34.615 0.00 0.00 42.99 2.44
369 397 5.877564 TGCGGATGTTTTCCTTTTTCTTTTT 59.122 32.000 0.00 0.00 42.99 1.94
370 398 5.293324 GTGCGGATGTTTTCCTTTTTCTTTT 59.707 36.000 0.00 0.00 42.99 2.27
371 399 4.808895 GTGCGGATGTTTTCCTTTTTCTTT 59.191 37.500 0.00 0.00 42.99 2.52
372 400 4.368315 GTGCGGATGTTTTCCTTTTTCTT 58.632 39.130 0.00 0.00 42.99 2.52
373 401 3.243737 GGTGCGGATGTTTTCCTTTTTCT 60.244 43.478 0.00 0.00 42.99 2.52
374 402 3.057019 GGTGCGGATGTTTTCCTTTTTC 58.943 45.455 0.00 0.00 42.99 2.29
375 403 2.432510 TGGTGCGGATGTTTTCCTTTTT 59.567 40.909 0.00 0.00 42.99 1.94
376 404 2.035632 TGGTGCGGATGTTTTCCTTTT 58.964 42.857 0.00 0.00 42.99 2.27
381 409 1.234821 TCACTGGTGCGGATGTTTTC 58.765 50.000 0.00 0.00 0.00 2.29
386 414 1.135603 CACAAATCACTGGTGCGGATG 60.136 52.381 0.00 0.00 0.00 3.51
417 446 1.135915 AGAGTTGAGAGGCGCACTATG 59.864 52.381 10.83 0.00 0.00 2.23
418 447 1.479709 AGAGTTGAGAGGCGCACTAT 58.520 50.000 10.83 0.24 0.00 2.12
424 453 4.142359 ACTGTACATTAGAGTTGAGAGGCG 60.142 45.833 0.00 0.00 0.00 5.52
456 486 2.085320 GCACCGACTCTCTCTGACTTA 58.915 52.381 0.00 0.00 0.00 2.24
485 515 5.921408 AGATTCTTCGTGTTACTTGACTGTC 59.079 40.000 0.00 0.00 0.00 3.51
523 582 3.954904 GGAGGACAACACTATCTGCTCTA 59.045 47.826 0.00 0.00 0.00 2.43
527 586 2.497675 TCTGGAGGACAACACTATCTGC 59.502 50.000 0.00 0.00 0.00 4.26
529 588 4.223923 CCTTTCTGGAGGACAACACTATCT 59.776 45.833 0.00 0.00 39.25 1.98
577 636 7.865820 TCTCAGAAACAAGATTCCAAGGATAT 58.134 34.615 0.00 0.00 0.00 1.63
599 658 3.057245 GGATGTTGTTTTCCTTGGCTCTC 60.057 47.826 0.00 0.00 0.00 3.20
634 705 0.036765 CCGGAGTGTGGAATTTCGGA 60.037 55.000 0.00 0.00 38.42 4.55
659 731 2.125512 CGGGCTGAAAGGGTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
698 770 0.108207 GTCAGATCATGAGGCTGGGG 59.892 60.000 21.49 4.06 39.07 4.96
703 780 2.996249 TGGAAGTCAGATCATGAGGC 57.004 50.000 0.09 0.00 39.07 4.70
706 783 4.286808 TGGAACTTGGAAGTCAGATCATGA 59.713 41.667 0.00 0.00 38.57 3.07
720 797 0.594796 GCGTTGCAGTTGGAACTTGG 60.595 55.000 13.40 1.37 43.04 3.61
721 798 0.594796 GGCGTTGCAGTTGGAACTTG 60.595 55.000 13.40 1.98 43.04 3.16
722 799 1.733526 GGCGTTGCAGTTGGAACTT 59.266 52.632 13.40 0.00 43.04 2.66
723 800 2.542907 CGGCGTTGCAGTTGGAACT 61.543 57.895 13.40 0.00 43.04 3.01
724 801 2.051345 CGGCGTTGCAGTTGGAAC 60.051 61.111 0.00 6.45 42.01 3.62
725 802 3.959975 GCGGCGTTGCAGTTGGAA 61.960 61.111 9.37 0.00 34.15 3.53
749 826 4.284860 ACGACAGCTGCTGCGACA 62.285 61.111 35.13 0.00 45.42 4.35
882 964 2.694829 GAAGGTGACGACAGCACGGT 62.695 60.000 18.54 1.61 45.57 4.83
918 1000 1.479323 GGCCCCGATATATACAGCGAA 59.521 52.381 0.00 0.00 0.00 4.70
959 1041 1.003112 GTGTGATGGTTGGGGCGTA 60.003 57.895 0.00 0.00 0.00 4.42
962 1044 1.602323 TTCGTGTGATGGTTGGGGC 60.602 57.895 0.00 0.00 0.00 5.80
964 1046 0.536233 TGGTTCGTGTGATGGTTGGG 60.536 55.000 0.00 0.00 0.00 4.12
966 1048 1.002900 GTGTGGTTCGTGTGATGGTTG 60.003 52.381 0.00 0.00 0.00 3.77
967 1049 1.305201 GTGTGGTTCGTGTGATGGTT 58.695 50.000 0.00 0.00 0.00 3.67
968 1050 0.179234 TGTGTGGTTCGTGTGATGGT 59.821 50.000 0.00 0.00 0.00 3.55
971 1053 0.534203 GGGTGTGTGGTTCGTGTGAT 60.534 55.000 0.00 0.00 0.00 3.06
972 1054 1.153329 GGGTGTGTGGTTCGTGTGA 60.153 57.895 0.00 0.00 0.00 3.58
999 1090 2.362503 CCCCGGCCTTCTTTTCCC 60.363 66.667 0.00 0.00 0.00 3.97
1000 1091 2.362503 CCCCCGGCCTTCTTTTCC 60.363 66.667 0.00 0.00 0.00 3.13
1016 1113 1.826720 TGGCTTGGATTCTTTGATGCC 59.173 47.619 0.00 0.00 39.53 4.40
1021 1118 1.701704 GCGTTGGCTTGGATTCTTTG 58.298 50.000 0.00 0.00 35.83 2.77
1022 1119 0.240945 CGCGTTGGCTTGGATTCTTT 59.759 50.000 0.00 0.00 36.88 2.52
1023 1120 1.875963 CGCGTTGGCTTGGATTCTT 59.124 52.632 0.00 0.00 36.88 2.52
1024 1121 2.690778 GCGCGTTGGCTTGGATTCT 61.691 57.895 8.43 0.00 36.88 2.40
1025 1122 2.202479 GCGCGTTGGCTTGGATTC 60.202 61.111 8.43 0.00 36.88 2.52
1026 1123 3.747976 GGCGCGTTGGCTTGGATT 61.748 61.111 8.43 0.00 40.72 3.01
1053 1150 1.331756 GATGGCTTGGTACATTGCTCG 59.668 52.381 0.00 0.00 39.30 5.03
1055 1152 1.686115 GGGATGGCTTGGTACATTGCT 60.686 52.381 0.00 0.00 39.30 3.91
1507 1607 2.125512 GCGGCACCGTCTTCTGAT 60.126 61.111 11.27 0.00 42.09 2.90
1551 1651 1.235948 AAATCGGCCGCGGTGTAAAA 61.236 50.000 28.70 7.13 0.00 1.52
1664 1768 8.557864 TGACCAGACGAAATAAATTACGAAAAA 58.442 29.630 0.00 0.00 0.00 1.94
1669 1773 7.229228 TCATGACCAGACGAAATAAATTACG 57.771 36.000 0.00 0.00 0.00 3.18
1890 2640 5.451381 CCTGTATGCAGTAACATCGACCTAA 60.451 44.000 10.09 0.00 41.02 2.69
1992 2742 0.031449 CCGCAACCAAACACCGAAAT 59.969 50.000 0.00 0.00 0.00 2.17
2090 2845 4.644163 TCCTAGACTAGCATAGGAGTCC 57.356 50.000 16.14 0.00 44.97 3.85
2091 2846 5.007682 CCTTCCTAGACTAGCATAGGAGTC 58.992 50.000 18.26 0.00 46.30 3.36
2092 2847 4.665957 TCCTTCCTAGACTAGCATAGGAGT 59.334 45.833 18.26 0.00 46.30 3.85
2093 2848 5.222048 ACTCCTTCCTAGACTAGCATAGGAG 60.222 48.000 29.10 29.10 46.30 3.69
2094 2849 4.665957 ACTCCTTCCTAGACTAGCATAGGA 59.334 45.833 16.14 16.14 44.97 2.94
2095 2850 4.993028 ACTCCTTCCTAGACTAGCATAGG 58.007 47.826 12.67 12.67 44.97 2.57
2173 2928 9.856488 CTGCAGTTTTATAACTACAAGTCTAGA 57.144 33.333 5.25 0.00 42.67 2.43
2174 2929 8.596380 GCTGCAGTTTTATAACTACAAGTCTAG 58.404 37.037 16.64 0.00 42.67 2.43
2175 2930 7.548075 GGCTGCAGTTTTATAACTACAAGTCTA 59.452 37.037 16.64 0.00 42.67 2.59
2176 2931 6.371825 GGCTGCAGTTTTATAACTACAAGTCT 59.628 38.462 16.64 0.00 42.67 3.24
2177 2932 6.148811 TGGCTGCAGTTTTATAACTACAAGTC 59.851 38.462 16.64 0.26 42.67 3.01
2182 2942 5.183228 TCCTGGCTGCAGTTTTATAACTAC 58.817 41.667 16.64 0.00 42.67 2.73
2224 2984 5.056553 AGTTGGCCTTAGTTTTCCAAGTA 57.943 39.130 3.32 0.00 39.66 2.24
2239 2999 3.357079 CGTGCACTGGAGTTGGCC 61.357 66.667 16.19 0.00 0.00 5.36
2240 3000 1.639298 GATCGTGCACTGGAGTTGGC 61.639 60.000 16.19 0.00 0.00 4.52
2241 3001 1.021390 GGATCGTGCACTGGAGTTGG 61.021 60.000 16.19 0.00 0.00 3.77
2242 3002 1.021390 GGGATCGTGCACTGGAGTTG 61.021 60.000 16.19 0.00 0.00 3.16
2243 3003 1.296715 GGGATCGTGCACTGGAGTT 59.703 57.895 16.19 0.00 0.00 3.01
2244 3004 1.480212 TTGGGATCGTGCACTGGAGT 61.480 55.000 16.19 0.00 0.00 3.85
2245 3005 0.321564 TTTGGGATCGTGCACTGGAG 60.322 55.000 16.19 0.00 0.00 3.86
2246 3006 0.605319 GTTTGGGATCGTGCACTGGA 60.605 55.000 16.19 6.05 0.00 3.86
2247 3007 1.875963 GTTTGGGATCGTGCACTGG 59.124 57.895 16.19 0.00 0.00 4.00
2248 3008 1.497278 CGTTTGGGATCGTGCACTG 59.503 57.895 16.19 8.79 0.00 3.66
2249 3009 1.671054 CCGTTTGGGATCGTGCACT 60.671 57.895 16.19 0.00 38.47 4.40
2250 3010 1.669760 TCCGTTTGGGATCGTGCAC 60.670 57.895 6.82 6.82 40.94 4.57
2251 3011 2.744377 TCCGTTTGGGATCGTGCA 59.256 55.556 0.00 0.00 40.94 4.57
2271 3031 0.382515 CGAAAACAGGCCAAAACGGA 59.617 50.000 5.01 0.00 36.56 4.69
2272 3032 0.101579 ACGAAAACAGGCCAAAACGG 59.898 50.000 5.01 0.00 38.11 4.44
2273 3033 1.915952 AACGAAAACAGGCCAAAACG 58.084 45.000 5.01 5.50 0.00 3.60
2274 3034 4.036567 ACTAACGAAAACAGGCCAAAAC 57.963 40.909 5.01 0.00 0.00 2.43
2275 3035 4.722361 AACTAACGAAAACAGGCCAAAA 57.278 36.364 5.01 0.00 0.00 2.44
2276 3036 4.425520 CAAACTAACGAAAACAGGCCAAA 58.574 39.130 5.01 0.00 0.00 3.28
2277 3037 3.181485 CCAAACTAACGAAAACAGGCCAA 60.181 43.478 5.01 0.00 0.00 4.52
2278 3038 2.359531 CCAAACTAACGAAAACAGGCCA 59.640 45.455 5.01 0.00 0.00 5.36
2279 3039 2.287970 CCCAAACTAACGAAAACAGGCC 60.288 50.000 0.00 0.00 0.00 5.19
2280 3040 2.619646 TCCCAAACTAACGAAAACAGGC 59.380 45.455 0.00 0.00 0.00 4.85
2281 3041 3.303526 CGTCCCAAACTAACGAAAACAGG 60.304 47.826 0.00 0.00 38.65 4.00
2282 3042 3.303526 CCGTCCCAAACTAACGAAAACAG 60.304 47.826 0.00 0.00 38.65 3.16
2283 3043 2.613133 CCGTCCCAAACTAACGAAAACA 59.387 45.455 0.00 0.00 38.65 2.83
2284 3044 2.602933 GCCGTCCCAAACTAACGAAAAC 60.603 50.000 0.00 0.00 38.65 2.43
2285 3045 1.603326 GCCGTCCCAAACTAACGAAAA 59.397 47.619 0.00 0.00 38.65 2.29
2286 3046 1.228533 GCCGTCCCAAACTAACGAAA 58.771 50.000 0.00 0.00 38.65 3.46
2287 3047 0.106335 TGCCGTCCCAAACTAACGAA 59.894 50.000 0.00 0.00 38.65 3.85
2288 3048 0.106335 TTGCCGTCCCAAACTAACGA 59.894 50.000 0.00 0.00 38.65 3.85
2289 3049 1.135803 CATTGCCGTCCCAAACTAACG 60.136 52.381 0.00 0.00 36.22 3.18
2290 3050 1.201414 CCATTGCCGTCCCAAACTAAC 59.799 52.381 0.00 0.00 0.00 2.34
2291 3051 1.540267 CCATTGCCGTCCCAAACTAA 58.460 50.000 0.00 0.00 0.00 2.24
2292 3052 0.322997 CCCATTGCCGTCCCAAACTA 60.323 55.000 0.00 0.00 0.00 2.24
2293 3053 1.606313 CCCATTGCCGTCCCAAACT 60.606 57.895 0.00 0.00 0.00 2.66
2294 3054 1.182385 TTCCCATTGCCGTCCCAAAC 61.182 55.000 0.00 0.00 0.00 2.93
2295 3055 0.897863 CTTCCCATTGCCGTCCCAAA 60.898 55.000 0.00 0.00 0.00 3.28
2296 3056 1.304052 CTTCCCATTGCCGTCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
2297 3057 2.354729 CTTCCCATTGCCGTCCCA 59.645 61.111 0.00 0.00 0.00 4.37
2298 3058 2.440247 CCTTCCCATTGCCGTCCC 60.440 66.667 0.00 0.00 0.00 4.46
2299 3059 3.140814 GCCTTCCCATTGCCGTCC 61.141 66.667 0.00 0.00 0.00 4.79
2300 3060 2.361104 TGCCTTCCCATTGCCGTC 60.361 61.111 0.00 0.00 0.00 4.79
2301 3061 2.676471 GTGCCTTCCCATTGCCGT 60.676 61.111 0.00 0.00 0.00 5.68
2302 3062 2.053865 ATGTGCCTTCCCATTGCCG 61.054 57.895 0.00 0.00 0.00 5.69
2303 3063 1.259840 ACATGTGCCTTCCCATTGCC 61.260 55.000 0.00 0.00 0.00 4.52
2304 3064 0.609662 AACATGTGCCTTCCCATTGC 59.390 50.000 0.00 0.00 0.00 3.56
2305 3065 1.135315 CGAACATGTGCCTTCCCATTG 60.135 52.381 0.00 0.00 0.00 2.82
2306 3066 1.176527 CGAACATGTGCCTTCCCATT 58.823 50.000 0.00 0.00 0.00 3.16
2307 3067 0.680921 CCGAACATGTGCCTTCCCAT 60.681 55.000 0.00 0.00 0.00 4.00
2308 3068 1.303236 CCGAACATGTGCCTTCCCA 60.303 57.895 0.00 0.00 0.00 4.37
2309 3069 0.893727 AACCGAACATGTGCCTTCCC 60.894 55.000 0.00 0.00 0.00 3.97
2310 3070 0.240945 CAACCGAACATGTGCCTTCC 59.759 55.000 0.00 0.00 0.00 3.46
2311 3071 0.240945 CCAACCGAACATGTGCCTTC 59.759 55.000 0.00 0.00 0.00 3.46
2312 3072 1.178534 CCCAACCGAACATGTGCCTT 61.179 55.000 0.00 0.00 0.00 4.35
2313 3073 1.603455 CCCAACCGAACATGTGCCT 60.603 57.895 0.00 0.00 0.00 4.75
2314 3074 1.862602 GACCCAACCGAACATGTGCC 61.863 60.000 0.00 0.00 0.00 5.01
2315 3075 1.579429 GACCCAACCGAACATGTGC 59.421 57.895 0.00 0.00 0.00 4.57
2316 3076 0.882927 ACGACCCAACCGAACATGTG 60.883 55.000 0.00 0.00 0.00 3.21
2317 3077 0.179040 AACGACCCAACCGAACATGT 60.179 50.000 0.00 0.00 0.00 3.21
2318 3078 0.948678 AAACGACCCAACCGAACATG 59.051 50.000 0.00 0.00 0.00 3.21
2319 3079 0.948678 CAAACGACCCAACCGAACAT 59.051 50.000 0.00 0.00 0.00 2.71
2320 3080 1.096386 CCAAACGACCCAACCGAACA 61.096 55.000 0.00 0.00 0.00 3.18
2321 3081 1.650363 CCAAACGACCCAACCGAAC 59.350 57.895 0.00 0.00 0.00 3.95
2322 3082 1.526455 CCCAAACGACCCAACCGAA 60.526 57.895 0.00 0.00 0.00 4.30
2323 3083 2.111460 CCCAAACGACCCAACCGA 59.889 61.111 0.00 0.00 0.00 4.69
2324 3084 1.824760 AACCCAAACGACCCAACCG 60.825 57.895 0.00 0.00 0.00 4.44
2325 3085 1.038681 ACAACCCAAACGACCCAACC 61.039 55.000 0.00 0.00 0.00 3.77
2326 3086 0.382873 GACAACCCAAACGACCCAAC 59.617 55.000 0.00 0.00 0.00 3.77
2327 3087 0.752376 GGACAACCCAAACGACCCAA 60.752 55.000 0.00 0.00 34.14 4.12
2328 3088 1.152922 GGACAACCCAAACGACCCA 60.153 57.895 0.00 0.00 34.14 4.51
2329 3089 1.152922 TGGACAACCCAAACGACCC 60.153 57.895 0.00 0.00 43.29 4.46
2330 3090 4.563404 TGGACAACCCAAACGACC 57.437 55.556 0.00 0.00 43.29 4.79
2360 3120 3.583086 GATTTAGGGTGCGGCCGC 61.583 66.667 42.35 42.35 42.35 6.53
2361 3121 1.525995 ATGATTTAGGGTGCGGCCG 60.526 57.895 24.05 24.05 38.44 6.13
2362 3122 0.751643 ACATGATTTAGGGTGCGGCC 60.752 55.000 0.00 0.00 0.00 6.13
2363 3123 0.663153 GACATGATTTAGGGTGCGGC 59.337 55.000 0.00 0.00 0.00 6.53
2364 3124 1.308998 GGACATGATTTAGGGTGCGG 58.691 55.000 0.00 0.00 0.00 5.69
2365 3125 0.937304 CGGACATGATTTAGGGTGCG 59.063 55.000 0.00 0.00 38.63 5.34
2366 3126 1.308998 CCGGACATGATTTAGGGTGC 58.691 55.000 0.00 0.00 0.00 5.01
2367 3127 1.476833 CCCCGGACATGATTTAGGGTG 60.477 57.143 0.73 0.00 37.21 4.61
2368 3128 0.843984 CCCCGGACATGATTTAGGGT 59.156 55.000 0.73 0.00 37.21 4.34
2369 3129 0.537371 GCCCCGGACATGATTTAGGG 60.537 60.000 0.73 3.92 38.59 3.53
2370 3130 0.884704 CGCCCCGGACATGATTTAGG 60.885 60.000 0.73 0.00 0.00 2.69
2371 3131 2.616969 CGCCCCGGACATGATTTAG 58.383 57.895 0.73 0.00 0.00 1.85
2372 3132 4.868026 CGCCCCGGACATGATTTA 57.132 55.556 0.73 0.00 0.00 1.40
2383 3143 1.020333 TTTTAATCACGTCCGCCCCG 61.020 55.000 0.00 0.00 0.00 5.73
2384 3144 1.166989 TTTTTAATCACGTCCGCCCC 58.833 50.000 0.00 0.00 0.00 5.80
2446 3206 9.952030 CCTAAAACCCCAAATTATGTTTATGTT 57.048 29.630 0.00 0.00 31.16 2.71
2447 3207 8.044309 GCCTAAAACCCCAAATTATGTTTATGT 58.956 33.333 0.00 0.00 31.16 2.29
2448 3208 7.497579 GGCCTAAAACCCCAAATTATGTTTATG 59.502 37.037 0.00 0.00 31.16 1.90
2449 3209 7.570132 GGCCTAAAACCCCAAATTATGTTTAT 58.430 34.615 0.00 0.00 31.16 1.40
2450 3210 6.351117 CGGCCTAAAACCCCAAATTATGTTTA 60.351 38.462 0.00 0.00 31.16 2.01
2451 3211 5.569832 CGGCCTAAAACCCCAAATTATGTTT 60.570 40.000 0.00 0.00 32.62 2.83
2452 3212 4.081365 CGGCCTAAAACCCCAAATTATGTT 60.081 41.667 0.00 0.00 0.00 2.71
2453 3213 3.449377 CGGCCTAAAACCCCAAATTATGT 59.551 43.478 0.00 0.00 0.00 2.29
2454 3214 3.739830 GCGGCCTAAAACCCCAAATTATG 60.740 47.826 0.00 0.00 0.00 1.90
2455 3215 2.432874 GCGGCCTAAAACCCCAAATTAT 59.567 45.455 0.00 0.00 0.00 1.28
2456 3216 1.826096 GCGGCCTAAAACCCCAAATTA 59.174 47.619 0.00 0.00 0.00 1.40
2457 3217 0.611200 GCGGCCTAAAACCCCAAATT 59.389 50.000 0.00 0.00 0.00 1.82
2458 3218 0.543174 TGCGGCCTAAAACCCCAAAT 60.543 50.000 0.00 0.00 0.00 2.32
2459 3219 0.759436 TTGCGGCCTAAAACCCCAAA 60.759 50.000 0.00 0.00 0.00 3.28
2460 3220 0.759436 TTTGCGGCCTAAAACCCCAA 60.759 50.000 0.00 0.00 0.00 4.12
2461 3221 0.759436 TTTTGCGGCCTAAAACCCCA 60.759 50.000 0.00 0.00 0.00 4.96
2462 3222 0.037697 CTTTTGCGGCCTAAAACCCC 60.038 55.000 0.00 0.00 0.00 4.95
2463 3223 0.037697 CCTTTTGCGGCCTAAAACCC 60.038 55.000 0.00 0.00 0.00 4.11
2464 3224 0.037697 CCCTTTTGCGGCCTAAAACC 60.038 55.000 0.00 0.00 0.00 3.27
2465 3225 0.669318 GCCCTTTTGCGGCCTAAAAC 60.669 55.000 0.00 0.00 40.78 2.43
2466 3226 1.668867 GCCCTTTTGCGGCCTAAAA 59.331 52.632 0.00 7.86 40.78 1.52
2467 3227 3.372123 GCCCTTTTGCGGCCTAAA 58.628 55.556 0.00 0.00 40.78 1.85
2472 3232 4.377708 CTTGGGCCCTTTTGCGGC 62.378 66.667 25.70 0.00 46.29 6.53
2473 3233 2.434658 GAACTTGGGCCCTTTTGCGG 62.435 60.000 25.70 7.43 0.00 5.69
2474 3234 1.006220 GAACTTGGGCCCTTTTGCG 60.006 57.895 25.70 7.15 0.00 4.85
2475 3235 1.272490 GTAGAACTTGGGCCCTTTTGC 59.728 52.381 25.70 9.93 0.00 3.68
2476 3236 1.539827 CGTAGAACTTGGGCCCTTTTG 59.460 52.381 25.70 12.60 0.00 2.44
2477 3237 1.422402 TCGTAGAACTTGGGCCCTTTT 59.578 47.619 25.70 13.28 0.00 2.27
2478 3238 1.061546 TCGTAGAACTTGGGCCCTTT 58.938 50.000 25.70 13.68 0.00 3.11
2479 3239 1.209747 GATCGTAGAACTTGGGCCCTT 59.790 52.381 25.70 9.32 43.58 3.95
2480 3240 0.831307 GATCGTAGAACTTGGGCCCT 59.169 55.000 25.70 0.66 43.58 5.19
2481 3241 0.179054 GGATCGTAGAACTTGGGCCC 60.179 60.000 17.59 17.59 43.58 5.80
2482 3242 0.539986 TGGATCGTAGAACTTGGGCC 59.460 55.000 0.00 0.00 43.58 5.80
2483 3243 1.066430 TGTGGATCGTAGAACTTGGGC 60.066 52.381 0.00 0.00 43.58 5.36
2484 3244 3.000727 GTTGTGGATCGTAGAACTTGGG 58.999 50.000 2.59 0.00 43.58 4.12
2485 3245 3.000727 GGTTGTGGATCGTAGAACTTGG 58.999 50.000 8.02 0.00 43.58 3.61
2486 3246 3.659786 TGGTTGTGGATCGTAGAACTTG 58.340 45.455 8.02 0.00 43.58 3.16
2487 3247 4.553330 ATGGTTGTGGATCGTAGAACTT 57.447 40.909 8.02 0.00 43.58 2.66
2488 3248 5.670792 TTATGGTTGTGGATCGTAGAACT 57.329 39.130 8.02 0.00 43.58 3.01
2489 3249 6.920569 AATTATGGTTGTGGATCGTAGAAC 57.079 37.500 1.46 1.46 43.58 3.01
2490 3250 8.041919 TGTTAATTATGGTTGTGGATCGTAGAA 58.958 33.333 0.00 0.00 43.58 2.10
2491 3251 7.557724 TGTTAATTATGGTTGTGGATCGTAGA 58.442 34.615 0.00 0.00 45.75 2.59
2492 3252 7.780008 TGTTAATTATGGTTGTGGATCGTAG 57.220 36.000 0.00 0.00 0.00 3.51
2493 3253 9.833917 TTATGTTAATTATGGTTGTGGATCGTA 57.166 29.630 0.00 0.00 0.00 3.43
2494 3254 8.740123 TTATGTTAATTATGGTTGTGGATCGT 57.260 30.769 0.00 0.00 0.00 3.73
2535 3295 3.906879 GTGTGGGCGGCGGTTTTT 61.907 61.111 9.78 0.00 0.00 1.94
2553 3313 3.112709 GACGGACACGCCAGAAGC 61.113 66.667 0.00 0.00 46.04 3.86
2554 3314 2.543687 ATCGACGGACACGCCAGAAG 62.544 60.000 0.00 0.00 46.04 2.85
2555 3315 2.632544 ATCGACGGACACGCCAGAA 61.633 57.895 0.00 0.00 46.04 3.02
2556 3316 3.060000 ATCGACGGACACGCCAGA 61.060 61.111 0.00 0.00 46.04 3.86
2557 3317 2.880879 CATCGACGGACACGCCAG 60.881 66.667 0.00 0.00 46.04 4.85
2561 3321 4.771356 ACGGCATCGACGGACACG 62.771 66.667 0.00 0.00 39.02 4.49
2562 3322 3.179265 CACGGCATCGACGGACAC 61.179 66.667 0.00 0.00 39.02 3.67
2568 3328 3.188786 GACAGGCACGGCATCGAC 61.189 66.667 0.00 0.00 40.11 4.20
2569 3329 4.794439 CGACAGGCACGGCATCGA 62.794 66.667 10.51 0.00 40.11 3.59
2577 3337 3.112709 GAAGACGGCGACAGGCAC 61.113 66.667 16.62 0.00 46.16 5.01
2578 3338 3.282745 GAGAAGACGGCGACAGGCA 62.283 63.158 16.62 0.00 46.16 4.75
2579 3339 2.507324 GAGAAGACGGCGACAGGC 60.507 66.667 16.62 0.48 42.51 4.85
2580 3340 1.153939 CTGAGAAGACGGCGACAGG 60.154 63.158 16.62 0.00 0.00 4.00
2581 3341 0.730834 CACTGAGAAGACGGCGACAG 60.731 60.000 16.62 14.29 0.00 3.51
2582 3342 1.170290 TCACTGAGAAGACGGCGACA 61.170 55.000 16.62 2.84 0.00 4.35
2583 3343 0.171455 ATCACTGAGAAGACGGCGAC 59.829 55.000 16.62 7.87 0.00 5.19
2584 3344 0.452184 GATCACTGAGAAGACGGCGA 59.548 55.000 16.62 0.00 0.00 5.54
2585 3345 0.863538 CGATCACTGAGAAGACGGCG 60.864 60.000 4.80 4.80 0.00 6.46
2586 3346 1.142778 GCGATCACTGAGAAGACGGC 61.143 60.000 0.00 0.00 0.00 5.68
2587 3347 0.453793 AGCGATCACTGAGAAGACGG 59.546 55.000 0.00 0.00 0.00 4.79
2588 3348 1.135546 ACAGCGATCACTGAGAAGACG 60.136 52.381 17.46 0.00 40.25 4.18
2589 3349 2.645730 ACAGCGATCACTGAGAAGAC 57.354 50.000 17.46 0.00 40.25 3.01
2590 3350 2.297315 ACAACAGCGATCACTGAGAAGA 59.703 45.455 17.46 0.00 40.25 2.87
2591 3351 2.665537 GACAACAGCGATCACTGAGAAG 59.334 50.000 17.46 6.39 40.25 2.85
2592 3352 2.297315 AGACAACAGCGATCACTGAGAA 59.703 45.455 17.46 0.00 40.25 2.87
2593 3353 1.889170 AGACAACAGCGATCACTGAGA 59.111 47.619 17.46 0.00 40.25 3.27
2594 3354 2.360553 AGACAACAGCGATCACTGAG 57.639 50.000 17.46 11.16 40.25 3.35
2595 3355 2.677199 GAAGACAACAGCGATCACTGA 58.323 47.619 17.46 0.00 40.25 3.41
2596 3356 1.388093 CGAAGACAACAGCGATCACTG 59.612 52.381 9.21 9.21 43.59 3.66
2597 3357 1.000163 ACGAAGACAACAGCGATCACT 60.000 47.619 0.00 0.00 0.00 3.41
2598 3358 1.387084 GACGAAGACAACAGCGATCAC 59.613 52.381 0.00 0.00 0.00 3.06
2599 3359 1.698165 GACGAAGACAACAGCGATCA 58.302 50.000 0.00 0.00 0.00 2.92
2600 3360 0.635731 CGACGAAGACAACAGCGATC 59.364 55.000 0.00 0.00 0.00 3.69
2601 3361 0.039437 ACGACGAAGACAACAGCGAT 60.039 50.000 0.00 0.00 0.00 4.58
2602 3362 0.659417 GACGACGAAGACAACAGCGA 60.659 55.000 0.00 0.00 0.00 4.93
2603 3363 0.933047 TGACGACGAAGACAACAGCG 60.933 55.000 0.00 0.00 0.00 5.18
2604 3364 0.503117 GTGACGACGAAGACAACAGC 59.497 55.000 0.00 0.00 0.00 4.40
2605 3365 1.781429 CAGTGACGACGAAGACAACAG 59.219 52.381 0.00 0.00 0.00 3.16
2606 3366 1.402613 TCAGTGACGACGAAGACAACA 59.597 47.619 0.00 0.00 0.00 3.33
2607 3367 1.779724 GTCAGTGACGACGAAGACAAC 59.220 52.381 7.68 0.00 0.00 3.32
2608 3368 2.115348 GTCAGTGACGACGAAGACAA 57.885 50.000 7.68 0.00 0.00 3.18
2609 3369 3.839654 GTCAGTGACGACGAAGACA 57.160 52.632 7.68 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.