>input_sequence_73330
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--------------------------------------------------GGAAAA------GAAGGCCGGGGGCATCAA
AGAATCCAAGCCAACGCGCCACGTAGCGGCGAGCAATGTACCAAGCCATCCCCTACAGCAGCACCCGGCCCTGGGCCCGC
CCGTCGCCGGCGGCGGAGGCGGCCGTCGCCGTCAAGACGGAGACCACGGAGGCGGCGGCGTCCCGGGAGGACGCGGCGGG
GGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGGTGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGC
TGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCACGAGGTCGCCGACGAGGCGGCGCTCGCCGGGGTCGTGCCGGACGGC
GGGGAGGCT---GCGCTCCCGGTGGTGTTCGTCGGGGGGAAGCTCCTCGGCGGCCTCGATCGCCTCATGGCCGTCCACAT
CTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCGGCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTT
CCTTTCATCAGAAGACGGTGCCGCGGTTTAATCCTGGCCGTTGGATCGAATTTTACACCGCGGCCGATTTACTCTAGGAT
TTTGGGTTTCTTTAATGGTGTGCTAAATTTTTTCTCAACAAATATATTCATGAG---A----------------------
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>chr3B_1_TraesCS3B01G272600
CTCATCGTCGTATTCATCGCCGTCAGCAGCAAATCATCGCCAACATCGTCATCAACACTGTCGCACCCATAATAGCTAAC
GATCAGTACGTCCAACATCCTCTGTTCATGTCTGTTTCTACAGCTATTGTTACGTGTTTGCTGCTGTTATGCATGTCTTG
CTGTTCTTCTAGTTTGCTAGATTATTGCATGCTAGTATCTTTTCTAGTCATTAATTATTTACTGAAATTAATCATGAACT
TTCCTAATATTCCAACATGCTTGAGGGTACGGATAGTTGGCTTGATCAAAGCCCA-------------------------
--GATTTTGTCATTAGCAGCCTACGGGTAGATTGTAACCGTATAATATTTCGTTCAATAAAGTCCCAATTCGATGCAAAA
AGAAAAAGGAAAAC-ATCCGCACCAGTGATTTGTGCTCCCACCACCATAGTGCGCCTCTCAACTCTAATGTAC-AGTAAC
TTGATTAAGTCAGAGAGAGTCGGTGCGGGAAAAAGAC-AGTCAAGTAACACGAAGAATCTGAATTCAGGA----------
------------------CACTAGAGCAGATAGTGTTGTCCTCCAGAAAGGACCTTGGTCATGCTCAACAAAGCGATATC
CTTGGAATCTTGTTTCTG------------AGAGCCAAGGAAAACAACATCCACCGGCCAAACATCCGAA-ATTCCACAC
TCCGGTCCGGCGAGACCCTTTCAGCCCGCGCATCGTTCGTTGTTCCGCGC-----CCCAGCCTCATGATCTGACTTCCAA
GTTCCAACTGCAACGCCGCCGTCCGTGTCGCAGCAGCTGTCGTCACGGATCCGGCGGCCCCGACAGCGGCTGACGCCCCT
CCACGTCACTCCCCGCGACAACTCGTGT-----GCAGTCCCCGCGGAAAGCTCCCCCGCGTCCTGCGGGTCCCACATACT
ACCACCGTGCTGTCGTCACCTTCCCACCTCACCTCCCTCTTCGCTGTATATATCGGGGCCCCTTCACCTCCCCAAGCCAT
TACGCCCCAACCAT---------CACACGAACCACACACCCGCGCAAGAGGGAAAA------GAAGGCCGGGGGCATCAA
AGAATCCAAGCCAACGCGCCACGTAGCGGCGAGCAATGTACCAAGCCATCCCCTACAGCAGCACCCGGCCCTGGGCCCGC
CCGTCGCCGGCGGCGGAGGCGGCCGTCGCCGTCAAGACGGAGACCACGGAGGCGGCGGCGTCCCGGGAGGACGCGGCGGG
GGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGGTGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGC
TGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCACGAGGTCGCCGACGAGGCGGCGCTCGCCGGGGTCGTGCCGGACGGC
GGGGAGGCT---GCGCTCCCGGTGGTGTTCGTCGGGGGGAAGCTCCTCGGCGGCCTCGATCGCCTCATGGCCGTCCACAT
CTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCGGCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTT
CCTTTCATCAGAAGACGGTGCCGCGGTTTAATCCTGGCCGTTGGATCGAATTTTACACCGCGGCCGATTTACTCTAGGAT
TTTGGGTTTCTTTAATGGTGTGCTAAATTTTTTCTCAACAAATATATTCATGAG---AAAAAA-GAAACAGACAGGTAGC
ATTACTGTTTTTC-------------------------------------------------------------------
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---------------------------------------------------------------------GTAATTTATTT
CGTCTGGTCATGAGCATGTGAAT----ACGGAAGAAGAGCGTGCGCGGCATTGCAGCGTCTGTACAGTTTGTCGTTTCTA
TTTCCGAGTTAATGAGAATCAGATGCTTCTTACGGATA-TCTTCACCTGCGGCCTGAAATTTCAT---------------
--------AAGTTAGGCGTCTGGTTTTCGTTGGTACACGGACGCTTGATTGAAGTCATGGTTGGTTGTTGAGAAGA--TT
TAGGTCGATGTTACTGCATACAGGTGGCATGGCTTCCCTATGTCAATAGGGTATTCATGTCATGCGTACAGTACAGCTCC
TGATTCCATTCCAGTCCAACTATTTCGGTGTTTGGTTGCGGA-TACTAATAAATCACCTATCAACAATCTG---TCGTCG
TTTGGTTGCTCGTTTCTAACAATCTTTTACTTGC-ATGCATCCTGGACTCCTATGCTAGTCTAGGAAGGAGTAGGAAGTT
GCATCATCATCAACAACTAGTCTTGGACTCGTCATCGTTTATATTTTTCTAGACT-----TGTAGTTATAAAACTGCAGC
CAGGAGAGGAGACGAGAAGCGGTTACTTGGAAAACTAAGGCCAACTCCAGTGCACGATCCCAAACGGACGTCCGTTTTGG
CCTGTTTTCGTTAGTTTGGGACGGCAATGGGAAGGCACATGTTCGGTTGGGTCGTTTGGGTTGTCCATGCGGCCAAAGCG
CGGCCGCACCCTAAATCATGTCCGGGGCGGACGTGATTAAAAAACGCAAAAAAACTAAAATAAAATGATAAAACGCAAAC
ATAAAAACATAAACATAATTTGGGGTTTTAGGCCGCAAAAGGGCCCAAGTTCTACGATCCACAACCATAATTAACATAAA
AAAACAAAAACCAAAAAAACCGCCGCCCACACGCTTCTGGCGTGTCCGTCGATGCCGTGCCTGTCGCCGTCTTCTCAGTG
ATCGCTGTTGTCTTCGTCGTCACTGACGAGGTCGA
>chr3D_261
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--------------------TTGAGGGTACGGATAGTTGGCTTGATCAAAGCCCATATTTTGTCAACTTTTTCTGCGAGG
TAGATTTTGTCATTAGCAGCCTACGGGCAGATTGTAACCGGATATTATTTCGTTGAATAAAGTCCCAATTCGATGG----
----AAAGAAAAAA-ATCCGCACCAGTGGTTTGTGCTCCCACCAC--TAGTGTGCCTCTCAACTCTAATGTAC-AGTAAC
TTGACCAAGTCAGAGAGAATCGGTGCGGGAAAAATACAAGTCAAGTAACACGAATAATCTGAATTCAGGAGGCCAACACG
AAGAATCTGAATTCAGGACACGAGACCGGATAGTGTTGTTCTCCTGAAAGGACCTTGGTCATGCTCAACAAAGCGGTATC
CTTGGAATCTTGTTTCTCAGAGCCAGAGCCAGAGCCAAGGAAAACAACATCCACCGGCCAAACACCCGAAAATTCCACAC
TGCGGTCCGGTGAGACCCTTTCAGCCCGCGCAT-----------------CGCTGCCCACCCCCATGATCTGACTT----
---CCAACTGCAACGCCGCCGTCCGCGTCGCAGCGGCTGTCGTCACGGATCCGGCGGCCCCGACAGCGGCTGACGCCCCT
CCACGTCACTCCCCGCGACAACTCGTGT-----GCAGTCCCCGCGGAAAGCTCCCCCGCGTCCTGCGGGTCCCACATACT
ACCGCCGTGCTGTCGTCACCTTCCCACCTCACCTCCCTCCTCGCTGTATATATC-TGGCCCCTTCACCTCCCCAAGCCAT
CACACACACGCCCAACAATCGCAGACACGAACCACACACCCGCGCAAGACAGGGAAAAGAGGGAAGGCCGGGAGCAT---
------------------CCACGTAGCCGTGCGCAATGTACCAAGCCATCCCCTACAGCAGCACCCGGCCCTGGGCCCGC
CCGTCGCCGGCGGCGGAGGCGGCCGTCGCCGTCAAGACGGAGACCGCGGAGGCGTCGGCGTCCCGGGAGGACGCGGCGGG
GGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGGTGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGC
TGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCACGAGGTCGCCGACGAGGCCGCGCTCGCCGGGGTCGTGCCGGACGGC
GGGGAGGCAGCGGCGCTCCCGGCGGTGTTCGTCGGGGGGAAGCTCCTCGGCGGCCTCGATCGCCTCATGGCCGTCCACAT
CTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCGGCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTT
CCTTTCGTCAGAAGACGGTGCCGCGGTGTAATCCTGGCCGTTGGATCGA-----------------ATTTACTCTAGGAT
TTTGGGTTTCTTTAATGGTGTGCTAAATTTTTTCTCAACAAATATATTTATGAG---AAAAAAAGAAACAGACAGCTAGC
GTTACTGATTTTG-------------------------------------------------------------------
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---------------------------------------------------------------------GTAATTTATTT
CGTCTGGTCATGAGCATGTGAAT----ACGGAAGAAGAGCATGGGCGGCATTGCAGCGTCTGTACAGTTTGTCGTTTCCA
TTTCCGAGTTAATGTGAATCAGATGCTTCTTACGGA-A-TCTTCACCTGCGGCCTGAAATTTCATTGTCCCTTTTTTTTC
GTTAACATAAGTTAGGCGTCTGGTTTTCGTTGGTACACGGACGCTTGATTGGAGTCATGGTTGGTTGTTGAGAGGA--TA
TAGGTCGATGTTACTGCATACAGGTGGCATGGCTAACCTATGTCAATAGGGTATTCATGTCATGCGTACAGTACAACTCC
TGATTCCATTCCAGTCCAACTGTTTCGGTGTTTGGTTGCGGA-TACTAATAAATCACCTATCAACAATCTG---TCGTCG
TTTGGTTGCTCGTTTCTAACAATCTTTTACTTGC-ATGCATCCTA-----CTATGCTAGTCTAGGAAGGAGTAGGAAGTT
GCATCATCATCAACAACTAGTCTTGGATTAGTCATCAT--------------ACT-----TCTAGTTATAAAACTGCAGC
CAGGAGAGGAGACGAGAAGCGGTAACTTGGAAAACTAA------------------------------------------
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>chr3A_261
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--------------------TTGAGGGTATGGATAGTTGGCTTGATCAAAGCCC--------------------------
-AGATTTTGTCATTAGCAACCTACGGGCAGATTGTAACCAGATAATATTTCGTTGAATAAAGTCCCAATTCGATGG----
----AATTTTTTTTTATCCGCACCAGTGATTTGTGCTCCCACCAC--TAGTGTGCCTCTCAACTCTAATGTACTAGTAAC
TTGATCAAGTCAGAGAGAGTCGGTGCGGGAAAAATACAAGTCAAGTAACACGAAGAATCTGAATTCAGGAGGCCAACACG
AAGAATCTGAATTCAGGACACGAGACCGGACAGTGTTGTCCTCCAGAAAGGACCTTGGTGATGCTCAACAA---------
--------------------------AGCCAGAGCCAAGGAAAACAACATCCACCGGCCAAACGCCCG-AAATTCCACAC
TCCGGTCCGGTGAGACCCTTTCAGCCCGCGCATCGTTCGCTGTTCCGCGGCGCTGCCCACACCCATGATTTGACTC----
---CCAACTGCAACGCCGCCGTCCGCGTCGCAGCAGCTGTCGTCACGGATCCGGCGGCCCCGACAGCGGCTGACGCCCCT
CCACGTCACTCCCCGCGACAACTCGTGTGCTGTGCAGTCCCCGCGGAAAGCTCCCCCGCGTCCTGCGGGTCCCGCATACT
ACCGCCGTGCTGTCGTCACCTTCCCACCTCACCTCCCTCCTCCCTGTATATATC-GGGCCCCTTCGCCTCCCCAAGCCAT
CACACAGACGCCCAGCCATCGTGCACACGAACCACACACCGGCGCAAGACAGGGAAAAGAGGGAAGGTCGGGAGCAT---
------------------CCACGTAGTGGTGCGCAATGTACCAAGCAATCCCCTACAGCAGCACCCGGCCCTGGGCCCGC
CCGTCGCCGGCGGCGGAGCCGGCCGTGGCCGTCAAGGCGGAGACCGCGGAGGCGGCGGCGTCCCGGGAGGACGCGGCGGG
GGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGGTGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGC
TGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCACGAGGTCGCCGACGAGGCCGCGCTCGCCGGGGTCGTGCCGGACGGT
GGGGAGGCAGCGGCGCTCCCGGCGGTCTTCGTCGGCGGGAAGCTCCTCGGAGGCCTCGATCGCCTCATGGCCGTCCACAT
CTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCGGCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTT
CCTTTCGTCAGAAGACGGTGCCGCGGTTTAATCCTGGCCGTCGGATCGAAGTTTACACCGCGGCCGATTTACTCTAGGAT
TTTGGGTTTCTTTAATGGTGTGCTAATTTTTTTCTCAAAAAATATATTTATATGAGAAAAAAA-GAAACAGACAGCTAGC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCTATTCATCTTCAA
TCATGGCAGTACAACGAATACCAGAAATAAAAATTACAACCAGAATCATAAACCACCTAGCGACGACTACAAGCACCGAA
GCGAGCCGAAGGCGCGCCGCCGTCATCGCCCCTCCATCGCCGGAGCCGGGCACAACTTGTTGTAGTAGACAGTCGGGAAG
TCGTCGTGCTAAGGCCCCATAGGACCAGCACCCCAGAACAGTAACCGCCGCCGATGAAGATTTTGGTAAGTAATTTATTT
CGTCTGGTCATGGGCATGTGAATGAGTACGGAAGAAGAGC--------------------------GTTTGTCGTTTCTA
TTTCCGAGTTAATGAGAATCAGATGCTTCTTACGGA-AATCTTCACCTGCGGCCTGAAATTTCATTCTCCGTTTTTTCAG
TTAAC---AAGTTAGGCGTCTAGCTTTCGTTGGTACACGGACGCTTGATTCAAGTCATGGTTGGTTGTTGACAAGATTTA
TAGGTGGATGTTACTGCATACAGGTGGCATGGCTAACCTATGTCAATAGGGTATTCATGTGT---GTACAGTACAGCTAC
CGATTCCATTCCAGTCCAACTGTTTCAGTGTTTAGTTGCGGATTACTAATAAACCATCCATCAATCAACAATCTTCGTCG
TTTGGTTGCCCGTTTCTAACAATCTTTTACTTGCAATGCATCCGA-----CTATGCTAGTCTAGGAAGGAGTAGGAAGTT
GCATCATCATCAACAACTAGTCTTGGATTAGTCATCAT--------------ACCTCTAGTCTAGTTATAAAACTGCAGC
CAGCAGAGGAGACGAGAAGCGGTAACTTGGAAAACTAA------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
---------------------------S------------S-------------S--------------------SSSSS
SSSS----S----S-------------------------------SS-----S---------------------------
-----S----------------------------S---------------------------------------------
---------------------S---S-S-----------------------------------------------S----
-----------------S----------------------------------------------S---------------
----------S----------------------------S---------S---------S--S-------------SSSS
SSS----------------------S------------------------------------------------------
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---S-----------------------------------S--------------S-------------------------
S--S-S-SSS--SS-----------------------------------SS-SS------------------S----SSS
SSSSSSSSSSSSSSSSSS-----------S-S------------------------------------------------
---------------------------------------------S----------------------------------
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----------------------------------------------------S---------------------------
--------S-------------S---------------------------------------------------------
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------S-------------------------------------------S-----------------------------
------------------------------------------------S--------------------------S----
S------S----S-------------------------------------------------------------------
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----------------------------------------S--S------------------------------------
------------------------------------S-------------------------------------------
-------------------------------------------------------------------------------S
----------------------------------SS--------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------SSSSSS------------------------------
---------------------------S-S------S-SSSSSSSSSSSSSS---------S------------------
-----------------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_39
-------------------CCGTCAGCAGCAAATCATCG-----------------------------------------
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>reverse_2742
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---------------------ATTTCGGTGTTTGGTTGCGG---------------------------------------
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