Multiple sequence alignment - TraesCS3B01G272300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G272300
chr3B
100.000
3408
0
0
1
3408
438539422
438536015
0.000000e+00
6294.0
1
TraesCS3B01G272300
chr3B
87.126
334
33
4
3076
3408
812677377
812677701
1.490000e-98
370.0
2
TraesCS3B01G272300
chr3B
100.000
31
0
0
2906
2936
29250801
29250771
1.320000e-04
58.4
3
TraesCS3B01G272300
chr3A
91.286
2100
66
40
869
2877
464913862
464915935
0.000000e+00
2756.0
4
TraesCS3B01G272300
chr3A
94.032
620
30
4
1
620
464913041
464913653
0.000000e+00
933.0
5
TraesCS3B01G272300
chr3A
83.333
216
5
4
655
867
464913638
464913825
1.630000e-38
171.0
6
TraesCS3B01G272300
chr3A
95.918
49
2
0
2939
2987
464917463
464917511
2.820000e-11
80.5
7
TraesCS3B01G272300
chr3D
92.632
1208
40
22
655
1836
339847834
339846650
0.000000e+00
1692.0
8
TraesCS3B01G272300
chr3D
91.981
1060
38
8
1844
2875
339846593
339845553
0.000000e+00
1443.0
9
TraesCS3B01G272300
chr3D
95.484
620
12
9
1
620
339848422
339847819
0.000000e+00
976.0
10
TraesCS3B01G272300
chr3D
88.462
260
19
1
2944
3192
339843964
339843705
1.540000e-78
303.0
11
TraesCS3B01G272300
chr3D
91.304
161
13
1
3249
3408
339843502
339843342
5.730000e-53
219.0
12
TraesCS3B01G272300
chr3D
100.000
49
0
0
2939
2987
339844004
339843956
1.300000e-14
91.6
13
TraesCS3B01G272300
chr1D
85.888
411
56
2
1974
2383
470075907
470075498
1.450000e-118
436.0
14
TraesCS3B01G272300
chr1D
84.047
257
38
3
1358
1611
470076737
470076481
9.450000e-61
244.0
15
TraesCS3B01G272300
chr1B
85.366
410
60
0
1974
2383
652458175
652457766
3.140000e-115
425.0
16
TraesCS3B01G272300
chr1B
86.364
220
30
0
1392
1611
652458941
652458722
1.220000e-59
241.0
17
TraesCS3B01G272300
chr1A
85.437
412
56
3
1974
2383
563685114
563684705
3.140000e-115
425.0
18
TraesCS3B01G272300
chr1A
84.615
247
37
1
1371
1616
563685887
563685641
9.450000e-61
244.0
19
TraesCS3B01G272300
chr5A
85.714
210
30
0
1403
1612
383883145
383882936
4.430000e-54
222.0
20
TraesCS3B01G272300
chr5A
80.383
209
39
2
1405
1612
526393850
526394057
1.270000e-34
158.0
21
TraesCS3B01G272300
chr5D
84.689
209
32
0
1403
1611
291501065
291500857
3.450000e-50
209.0
22
TraesCS3B01G272300
chr5B
84.689
209
32
0
1403
1611
332202989
332202781
3.450000e-50
209.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G272300
chr3B
438536015
438539422
3407
True
6294.000000
6294
100.00000
1
3408
1
chr3B.!!$R2
3407
1
TraesCS3B01G272300
chr3A
464913041
464917511
4470
False
985.125000
2756
91.14225
1
2987
4
chr3A.!!$F1
2986
2
TraesCS3B01G272300
chr3D
339843342
339848422
5080
True
787.433333
1692
93.31050
1
3408
6
chr3D.!!$R1
3407
3
TraesCS3B01G272300
chr1D
470075498
470076737
1239
True
340.000000
436
84.96750
1358
2383
2
chr1D.!!$R1
1025
4
TraesCS3B01G272300
chr1B
652457766
652458941
1175
True
333.000000
425
85.86500
1392
2383
2
chr1B.!!$R1
991
5
TraesCS3B01G272300
chr1A
563684705
563685887
1182
True
334.500000
425
85.02600
1371
2383
2
chr1A.!!$R1
1012
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
720
721
0.037605
AGTGGCTGTACCGTACAAGC
60.038
55.0
12.39
15.60
43.94
4.01
F
1022
1059
0.472044
TATGTACATGCATGCCCGGT
59.528
50.0
26.53
12.87
0.00
5.28
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1632
1724
0.540830
ATACAGGTGGCGGGCAAAAA
60.541
50.0
5.57
0.00
0.00
1.94
R
2772
3278
0.391661
GACATCGCCGGCATATCCAT
60.392
55.0
28.98
3.98
34.01
3.41
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
45
46
8.567285
AGAAGTGGATAACAAACAGGATTAAG
57.433
34.615
0.00
0.00
0.00
1.85
261
262
7.455953
ACATACAGTGTATCATATGGTGGATCT
59.544
37.037
13.00
0.00
39.91
2.75
415
416
3.963374
TGGAGAGATTGGTCTGATAGTGG
59.037
47.826
0.00
0.00
33.97
4.00
516
517
2.222213
CGTGCAGTTTGGTCGAAACATA
59.778
45.455
12.30
0.00
45.69
2.29
547
548
1.535015
CCTCGAATCTGAACTCGCTCC
60.535
57.143
7.44
0.00
35.04
4.70
549
550
2.614520
CTCGAATCTGAACTCGCTCCTA
59.385
50.000
7.44
0.00
35.04
2.94
560
561
2.766263
ACTCGCTCCTATTTGTGATGGA
59.234
45.455
0.00
0.00
0.00
3.41
565
566
6.353323
TCGCTCCTATTTGTGATGGAATTTA
58.647
36.000
0.00
0.00
0.00
1.40
610
611
9.814899
TCATGTGTATTTTCTGTCATTGTTTTT
57.185
25.926
0.00
0.00
0.00
1.94
677
678
8.307921
AGTGTTTTCGTATCTTTTAAGGAGAC
57.692
34.615
0.00
0.00
0.00
3.36
678
679
7.929785
AGTGTTTTCGTATCTTTTAAGGAGACA
59.070
33.333
3.02
0.00
0.00
3.41
679
680
8.718734
GTGTTTTCGTATCTTTTAAGGAGACAT
58.281
33.333
3.02
0.00
0.00
3.06
720
721
0.037605
AGTGGCTGTACCGTACAAGC
60.038
55.000
12.39
15.60
43.94
4.01
794
795
2.121786
GCGCCGTACTTGATCGAAATA
58.878
47.619
0.00
0.00
0.00
1.40
885
921
5.473162
TGATGAGCGAAAATGAAAGGAGAAA
59.527
36.000
0.00
0.00
0.00
2.52
890
926
6.337356
AGCGAAAATGAAAGGAGAAACAAAA
58.663
32.000
0.00
0.00
0.00
2.44
891
927
6.476706
AGCGAAAATGAAAGGAGAAACAAAAG
59.523
34.615
0.00
0.00
0.00
2.27
892
928
6.475402
GCGAAAATGAAAGGAGAAACAAAAGA
59.525
34.615
0.00
0.00
0.00
2.52
893
929
7.306225
GCGAAAATGAAAGGAGAAACAAAAGAG
60.306
37.037
0.00
0.00
0.00
2.85
895
931
9.586435
GAAAATGAAAGGAGAAACAAAAGAGAA
57.414
29.630
0.00
0.00
0.00
2.87
897
933
9.538508
AAATGAAAGGAGAAACAAAAGAGAATG
57.461
29.630
0.00
0.00
0.00
2.67
898
934
6.507023
TGAAAGGAGAAACAAAAGAGAATGC
58.493
36.000
0.00
0.00
0.00
3.56
899
935
6.322201
TGAAAGGAGAAACAAAAGAGAATGCT
59.678
34.615
0.00
0.00
0.00
3.79
900
936
7.502226
TGAAAGGAGAAACAAAAGAGAATGCTA
59.498
33.333
0.00
0.00
0.00
3.49
1011
1048
5.720202
AGTCGTTGACACATGTATGTACAT
58.280
37.500
13.93
13.93
40.08
2.29
1021
1058
0.874390
GTATGTACATGCATGCCCGG
59.126
55.000
26.53
7.02
0.00
5.73
1022
1059
0.472044
TATGTACATGCATGCCCGGT
59.528
50.000
26.53
12.87
0.00
5.28
1059
1096
3.316573
GAAGCCAGGACCGGGACAG
62.317
68.421
15.76
0.00
0.00
3.51
1245
1287
1.080298
CACCGCGTTGCCTTTGTATA
58.920
50.000
4.92
0.00
0.00
1.47
1246
1288
1.668751
CACCGCGTTGCCTTTGTATAT
59.331
47.619
4.92
0.00
0.00
0.86
1251
1293
2.286184
GCGTTGCCTTTGTATATCGTGG
60.286
50.000
0.00
0.00
0.00
4.94
1314
1376
2.780010
GGAGGGGAAGGAGATCAAATCA
59.220
50.000
0.00
0.00
0.00
2.57
1315
1377
3.181446
GGAGGGGAAGGAGATCAAATCAG
60.181
52.174
0.00
0.00
0.00
2.90
1316
1378
3.713764
GAGGGGAAGGAGATCAAATCAGA
59.286
47.826
0.00
0.00
0.00
3.27
1317
1379
4.314238
AGGGGAAGGAGATCAAATCAGAT
58.686
43.478
0.00
0.00
0.00
2.90
1318
1380
4.350520
AGGGGAAGGAGATCAAATCAGATC
59.649
45.833
0.00
0.00
43.73
2.75
1319
1381
4.103785
GGGGAAGGAGATCAAATCAGATCA
59.896
45.833
6.70
0.00
45.39
2.92
1320
1382
5.398353
GGGGAAGGAGATCAAATCAGATCAA
60.398
44.000
6.70
0.00
45.39
2.57
1321
1383
6.125029
GGGAAGGAGATCAAATCAGATCAAA
58.875
40.000
6.70
0.00
45.39
2.69
1322
1384
6.039159
GGGAAGGAGATCAAATCAGATCAAAC
59.961
42.308
6.70
0.00
45.39
2.93
1323
1385
6.039159
GGAAGGAGATCAAATCAGATCAAACC
59.961
42.308
6.70
6.70
45.39
3.27
1621
1696
4.566907
GCCAAGAAAGGTACCAATACTCCA
60.567
45.833
15.94
0.00
0.00
3.86
1622
1697
5.566469
CCAAGAAAGGTACCAATACTCCAA
58.434
41.667
15.94
0.00
0.00
3.53
1632
1724
5.584551
ACCAATACTCCAACCTCTTTCTT
57.415
39.130
0.00
0.00
0.00
2.52
1678
1786
1.900498
GCTGCTTTGCCTGTCCACT
60.900
57.895
0.00
0.00
0.00
4.00
1684
1792
2.884639
GCTTTGCCTGTCCACTTCTTTA
59.115
45.455
0.00
0.00
0.00
1.85
1809
1966
4.746729
TGCCATGCTTGTGATTTCAATAC
58.253
39.130
0.00
0.00
0.00
1.89
1812
1969
5.682990
GCCATGCTTGTGATTTCAATACCAT
60.683
40.000
0.00
0.00
0.00
3.55
1813
1970
5.981315
CCATGCTTGTGATTTCAATACCATC
59.019
40.000
0.00
0.00
0.00
3.51
1814
1971
6.183360
CCATGCTTGTGATTTCAATACCATCT
60.183
38.462
0.00
0.00
0.00
2.90
1815
1972
6.198650
TGCTTGTGATTTCAATACCATCTG
57.801
37.500
0.00
0.00
0.00
2.90
1836
1995
4.780815
TGGAACAACTCATTCTCAACTGT
58.219
39.130
0.00
0.00
31.92
3.55
1837
1996
4.576053
TGGAACAACTCATTCTCAACTGTG
59.424
41.667
0.00
0.00
31.92
3.66
1839
1998
2.880890
ACAACTCATTCTCAACTGTGGC
59.119
45.455
0.00
0.00
0.00
5.01
1840
1999
2.880268
CAACTCATTCTCAACTGTGGCA
59.120
45.455
0.00
0.00
0.00
4.92
1841
2000
3.213206
ACTCATTCTCAACTGTGGCAA
57.787
42.857
0.00
0.00
0.00
4.52
1842
2001
3.144506
ACTCATTCTCAACTGTGGCAAG
58.855
45.455
0.00
0.00
0.00
4.01
1846
2024
4.937620
TCATTCTCAACTGTGGCAAGTATC
59.062
41.667
0.00
0.00
0.00
2.24
2425
2898
3.951680
CCTAGTCAAACTCTCTCCCTCTC
59.048
52.174
0.00
0.00
0.00
3.20
2426
2899
3.825908
AGTCAAACTCTCTCCCTCTCT
57.174
47.619
0.00
0.00
0.00
3.10
2427
2900
4.938575
AGTCAAACTCTCTCCCTCTCTA
57.061
45.455
0.00
0.00
0.00
2.43
2428
2901
5.466127
AGTCAAACTCTCTCCCTCTCTAT
57.534
43.478
0.00
0.00
0.00
1.98
2429
2902
5.445964
AGTCAAACTCTCTCCCTCTCTATC
58.554
45.833
0.00
0.00
0.00
2.08
2515
2988
2.209273
TGCGACCGTGATGATTATTGG
58.791
47.619
0.00
0.00
0.00
3.16
2593
3069
6.056428
TGATACTACTACATACAGCGTGTG
57.944
41.667
4.45
4.45
0.00
3.82
2648
3127
4.858680
TTGCAACCACGGTCCGCA
62.859
61.111
12.28
8.73
35.56
5.69
2772
3278
3.342627
CGGCCGTCGTGCAGAAAA
61.343
61.111
19.50
0.00
0.00
2.29
2775
3281
1.154225
GCCGTCGTGCAGAAAATGG
60.154
57.895
0.00
0.00
0.00
3.16
2936
3481
6.086222
CCAAGTTTATTCATCAAAGTCCACG
58.914
40.000
0.00
0.00
0.00
4.94
2937
3482
5.880054
AGTTTATTCATCAAAGTCCACGG
57.120
39.130
0.00
0.00
0.00
4.94
2981
5019
2.414161
GGTTAACCAAGCAGTTGCGATC
60.414
50.000
20.12
0.00
40.25
3.69
3038
5076
3.389656
TGATCCACTTTACCAGACACACA
59.610
43.478
0.00
0.00
0.00
3.72
3052
5090
5.240183
CCAGACACACACTCTCATTTGAAAT
59.760
40.000
0.00
0.00
0.00
2.17
3074
5112
0.040058
TGCCTACGGGTAGAACCTCA
59.960
55.000
7.41
0.00
38.64
3.86
3134
5183
1.746171
GCCGGAGTACCCAAATTCCTC
60.746
57.143
5.05
0.00
34.14
3.71
3136
5185
2.629051
CGGAGTACCCAAATTCCTCAC
58.371
52.381
0.00
0.00
34.14
3.51
3137
5186
2.027561
CGGAGTACCCAAATTCCTCACA
60.028
50.000
0.00
0.00
34.14
3.58
3140
5189
4.254492
GAGTACCCAAATTCCTCACAGTC
58.746
47.826
0.00
0.00
0.00
3.51
3142
5191
1.780309
ACCCAAATTCCTCACAGTCCA
59.220
47.619
0.00
0.00
0.00
4.02
3150
5199
2.601666
TCACAGTCCAGCGAGGCT
60.602
61.111
0.00
0.00
40.77
4.58
3174
5223
1.003839
GTTGGGGCGTGAGTCATCA
60.004
57.895
0.00
0.00
37.54
3.07
3187
5236
4.214332
GTGAGTCATCAAGGTCCAGAAAAC
59.786
45.833
0.00
0.00
37.14
2.43
3192
5241
4.039973
TCATCAAGGTCCAGAAAACGTACT
59.960
41.667
0.00
0.00
0.00
2.73
3193
5242
5.244402
TCATCAAGGTCCAGAAAACGTACTA
59.756
40.000
0.00
0.00
0.00
1.82
3194
5243
5.733620
TCAAGGTCCAGAAAACGTACTAT
57.266
39.130
0.00
0.00
0.00
2.12
3195
5244
5.475719
TCAAGGTCCAGAAAACGTACTATG
58.524
41.667
0.00
0.00
0.00
2.23
3196
5245
5.011329
TCAAGGTCCAGAAAACGTACTATGT
59.989
40.000
0.00
0.00
0.00
2.29
3197
5246
6.209192
TCAAGGTCCAGAAAACGTACTATGTA
59.791
38.462
0.00
0.00
0.00
2.29
3198
5247
6.786967
AGGTCCAGAAAACGTACTATGTAT
57.213
37.500
0.00
0.00
0.00
2.29
3199
5248
7.886629
AGGTCCAGAAAACGTACTATGTATA
57.113
36.000
0.00
0.00
0.00
1.47
3200
5249
7.938715
AGGTCCAGAAAACGTACTATGTATAG
58.061
38.462
0.00
0.00
36.46
1.31
3201
5250
7.559170
AGGTCCAGAAAACGTACTATGTATAGT
59.441
37.037
9.31
9.31
45.08
2.12
3202
5251
7.646922
GGTCCAGAAAACGTACTATGTATAGTG
59.353
40.741
13.42
2.26
43.10
2.74
3203
5252
7.167136
GTCCAGAAAACGTACTATGTATAGTGC
59.833
40.741
13.42
11.28
43.10
4.40
3204
5253
6.976349
CCAGAAAACGTACTATGTATAGTGCA
59.024
38.462
16.65
0.00
43.41
4.57
3205
5254
7.652105
CCAGAAAACGTACTATGTATAGTGCAT
59.348
37.037
16.65
2.70
43.41
3.96
3206
5255
8.480066
CAGAAAACGTACTATGTATAGTGCATG
58.520
37.037
16.65
6.68
43.41
4.06
3207
5256
7.652105
AGAAAACGTACTATGTATAGTGCATGG
59.348
37.037
16.65
6.50
43.41
3.66
3208
5257
4.806330
ACGTACTATGTATAGTGCATGGC
58.194
43.478
16.65
0.00
43.41
4.40
3209
5258
3.851969
CGTACTATGTATAGTGCATGGCG
59.148
47.826
16.65
7.98
43.41
5.69
3210
5259
3.319137
ACTATGTATAGTGCATGGCGG
57.681
47.619
3.84
0.00
41.77
6.13
3211
5260
2.897326
ACTATGTATAGTGCATGGCGGA
59.103
45.455
3.84
0.00
41.77
5.54
3212
5261
2.462456
ATGTATAGTGCATGGCGGAG
57.538
50.000
0.00
0.00
0.00
4.63
3232
5281
3.190878
GCCTCTTGTGGCGATTGG
58.809
61.111
0.00
0.00
43.74
3.16
3233
5282
2.409870
GCCTCTTGTGGCGATTGGG
61.410
63.158
0.00
0.00
43.74
4.12
3234
5283
1.750399
CCTCTTGTGGCGATTGGGG
60.750
63.158
0.00
0.00
0.00
4.96
3235
5284
1.750399
CTCTTGTGGCGATTGGGGG
60.750
63.158
0.00
0.00
0.00
5.40
3236
5285
2.196997
CTCTTGTGGCGATTGGGGGA
62.197
60.000
0.00
0.00
0.00
4.81
3237
5286
1.750399
CTTGTGGCGATTGGGGGAG
60.750
63.158
0.00
0.00
0.00
4.30
3238
5287
3.280938
TTGTGGCGATTGGGGGAGG
62.281
63.158
0.00
0.00
0.00
4.30
3239
5288
4.506255
GTGGCGATTGGGGGAGGG
62.506
72.222
0.00
0.00
0.00
4.30
3274
5469
0.033894
GGGGACGAGAGAGAGGAAGT
60.034
60.000
0.00
0.00
0.00
3.01
3289
5484
1.001406
GGAAGTATGGGGCTGAGATCG
59.999
57.143
0.00
0.00
0.00
3.69
3305
5501
0.982852
ATCGGACATGAGGAAGGCCA
60.983
55.000
5.01
0.00
36.29
5.36
3314
5510
1.202806
TGAGGAAGGCCAACTGAACAG
60.203
52.381
5.01
0.00
36.29
3.16
3317
5513
2.087646
GGAAGGCCAACTGAACAGATC
58.912
52.381
5.01
0.00
0.00
2.75
3318
5514
2.553028
GGAAGGCCAACTGAACAGATCA
60.553
50.000
5.01
0.00
36.38
2.92
3349
5545
1.595357
GAAGTGGTAGTGGGGGTCG
59.405
63.158
0.00
0.00
0.00
4.79
3360
5556
2.358247
GGGGTCGCGAAGAAGCAA
60.358
61.111
12.06
0.00
36.85
3.91
3369
5565
1.009829
CGAAGAAGCAAATCGGGAGG
58.990
55.000
0.00
0.00
33.15
4.30
3373
5569
1.839994
AGAAGCAAATCGGGAGGATCA
59.160
47.619
0.00
0.00
36.25
2.92
3374
5570
2.441001
AGAAGCAAATCGGGAGGATCAT
59.559
45.455
0.00
0.00
36.25
2.45
3405
5601
5.280062
GGGCCTATACCTAACCTTGAAGATC
60.280
48.000
0.84
0.00
0.00
2.75
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
45
46
5.965918
GTCGGAAGCAAATAACTGATAAAGC
59.034
40.000
0.00
0.00
0.00
3.51
261
262
4.157246
TGCCACTCTAAGAGTTACCTTCA
58.843
43.478
0.00
0.00
41.37
3.02
415
416
3.890936
AACTCAGTGCTCGGCTGGC
62.891
63.158
0.00
0.00
34.89
4.85
516
517
6.318900
AGTTCAGATTCGAGGTTTTGTTTCTT
59.681
34.615
0.00
0.00
0.00
2.52
584
585
9.814899
AAAAACAATGACAGAAAATACACATGA
57.185
25.926
0.00
0.00
0.00
3.07
651
652
9.415544
GTCTCCTTAAAAGATACGAAAACACTA
57.584
33.333
0.00
0.00
0.00
2.74
652
653
7.929785
TGTCTCCTTAAAAGATACGAAAACACT
59.070
33.333
0.00
0.00
0.00
3.55
653
654
8.080083
TGTCTCCTTAAAAGATACGAAAACAC
57.920
34.615
0.00
0.00
0.00
3.32
654
655
8.842358
ATGTCTCCTTAAAAGATACGAAAACA
57.158
30.769
0.00
0.00
0.00
2.83
720
721
7.391833
AGAGTTCTAGGGCAAAACTATCTTTTG
59.608
37.037
1.88
1.88
41.09
2.44
763
764
1.445410
TACGGCGCACAAGCTAGTG
60.445
57.895
10.83
0.00
42.37
2.74
794
795
0.890542
TCTCAAGGCAGCAACGCAAT
60.891
50.000
0.00
0.00
0.00
3.56
885
921
9.245481
AGTAGTAGTAGTAGCATTCTCTTTTGT
57.755
33.333
0.00
0.00
0.00
2.83
890
926
9.496873
CATGTAGTAGTAGTAGTAGCATTCTCT
57.503
37.037
0.00
0.00
0.00
3.10
891
927
9.491675
TCATGTAGTAGTAGTAGTAGCATTCTC
57.508
37.037
0.00
0.00
0.00
2.87
892
928
9.848710
TTCATGTAGTAGTAGTAGTAGCATTCT
57.151
33.333
0.00
0.00
0.00
2.40
895
931
7.175293
GGCTTCATGTAGTAGTAGTAGTAGCAT
59.825
40.741
1.02
4.41
0.00
3.79
896
932
6.485984
GGCTTCATGTAGTAGTAGTAGTAGCA
59.514
42.308
1.02
2.76
0.00
3.49
897
933
6.485984
TGGCTTCATGTAGTAGTAGTAGTAGC
59.514
42.308
1.02
0.00
0.00
3.58
898
934
8.447924
TTGGCTTCATGTAGTAGTAGTAGTAG
57.552
38.462
1.02
0.00
0.00
2.57
899
935
8.051535
ACTTGGCTTCATGTAGTAGTAGTAGTA
58.948
37.037
1.02
0.00
0.00
1.82
900
936
6.890814
ACTTGGCTTCATGTAGTAGTAGTAGT
59.109
38.462
1.02
0.00
0.00
2.73
1225
1267
2.195123
ATACAAAGGCAACGCGGTGC
62.195
55.000
39.90
39.90
44.14
5.01
1226
1268
1.080298
TATACAAAGGCAACGCGGTG
58.920
50.000
22.40
22.40
46.39
4.94
1245
1287
4.342378
TCTTGAGCTAAATAGAGCCACGAT
59.658
41.667
0.00
0.00
43.97
3.73
1246
1288
3.699538
TCTTGAGCTAAATAGAGCCACGA
59.300
43.478
0.00
0.00
43.97
4.35
1251
1293
5.278957
CCTCTCCTCTTGAGCTAAATAGAGC
60.279
48.000
0.00
0.00
41.18
4.09
1294
1346
3.713764
TCTGATTTGATCTCCTTCCCCTC
59.286
47.826
0.00
0.00
0.00
4.30
1314
1376
4.514401
GATGGTTTCCTACGGTTTGATCT
58.486
43.478
0.00
0.00
0.00
2.75
1315
1377
3.308866
CGATGGTTTCCTACGGTTTGATC
59.691
47.826
0.00
0.00
0.00
2.92
1316
1378
3.055675
TCGATGGTTTCCTACGGTTTGAT
60.056
43.478
0.00
0.00
0.00
2.57
1317
1379
2.299582
TCGATGGTTTCCTACGGTTTGA
59.700
45.455
0.00
0.00
0.00
2.69
1318
1380
2.690786
TCGATGGTTTCCTACGGTTTG
58.309
47.619
0.00
0.00
0.00
2.93
1319
1381
3.622166
ATCGATGGTTTCCTACGGTTT
57.378
42.857
0.00
0.00
0.00
3.27
1320
1382
3.055675
TCAATCGATGGTTTCCTACGGTT
60.056
43.478
0.00
0.00
30.27
4.44
1321
1383
2.498481
TCAATCGATGGTTTCCTACGGT
59.502
45.455
0.00
0.00
0.00
4.83
1322
1384
3.173668
TCAATCGATGGTTTCCTACGG
57.826
47.619
0.00
0.00
0.00
4.02
1323
1385
4.974103
GATCAATCGATGGTTTCCTACG
57.026
45.455
0.00
0.00
29.66
3.51
1338
1400
2.963854
CGCCGCTGCTCGATCAAT
60.964
61.111
0.00
0.00
41.67
2.57
1434
1509
3.303189
CTGTCCCCGATCAGCACT
58.697
61.111
0.00
0.00
0.00
4.40
1632
1724
0.540830
ATACAGGTGGCGGGCAAAAA
60.541
50.000
5.57
0.00
0.00
1.94
1678
1786
3.682858
CGAGCGGTGGAAGAAATAAAGAA
59.317
43.478
0.00
0.00
0.00
2.52
1684
1792
0.736325
CGACGAGCGGTGGAAGAAAT
60.736
55.000
2.87
0.00
36.03
2.17
1754
1869
2.158449
GTCATCGCAAGTCCTTGAGTTG
59.842
50.000
11.12
12.06
43.49
3.16
1809
1966
4.582869
TGAGAATGAGTTGTTCCAGATGG
58.417
43.478
0.00
0.00
0.00
3.51
1812
1969
5.059161
CAGTTGAGAATGAGTTGTTCCAGA
58.941
41.667
0.00
0.00
0.00
3.86
1813
1970
4.818546
ACAGTTGAGAATGAGTTGTTCCAG
59.181
41.667
0.00
0.00
0.00
3.86
1814
1971
4.576053
CACAGTTGAGAATGAGTTGTTCCA
59.424
41.667
0.00
0.00
0.00
3.53
1815
1972
4.023707
CCACAGTTGAGAATGAGTTGTTCC
60.024
45.833
0.00
0.00
0.00
3.62
1836
1995
4.015764
TGCATTGCTAAAGATACTTGCCA
58.984
39.130
10.49
0.00
0.00
4.92
1837
1996
4.637483
TGCATTGCTAAAGATACTTGCC
57.363
40.909
10.49
0.00
0.00
4.52
1839
1998
6.020121
GCACATTGCATTGCTAAAGATACTTG
60.020
38.462
10.49
0.00
44.26
3.16
1840
1999
6.038356
GCACATTGCATTGCTAAAGATACTT
58.962
36.000
10.49
0.00
44.26
2.24
1841
2000
5.585390
GCACATTGCATTGCTAAAGATACT
58.415
37.500
10.49
0.00
44.26
2.12
1842
2001
5.878261
GCACATTGCATTGCTAAAGATAC
57.122
39.130
10.49
0.00
44.26
2.24
1919
2375
2.159947
CGCACGTACGCAAAGTGATTAA
60.160
45.455
16.72
0.00
39.66
1.40
1960
2420
1.132643
CGGTACCTACACACAGAGAGC
59.867
57.143
10.90
0.00
0.00
4.09
2332
2805
1.672854
CGTCGATGGTCTTGCCCCTA
61.673
60.000
0.00
0.00
36.04
3.53
2515
2988
3.365969
CCCAGAGCGTTTTGACCAATAAC
60.366
47.826
0.00
0.00
0.00
1.89
2576
3049
3.378112
GGTACCACACGCTGTATGTAGTA
59.622
47.826
7.15
0.00
0.00
1.82
2577
3050
2.165030
GGTACCACACGCTGTATGTAGT
59.835
50.000
7.15
0.00
0.00
2.73
2578
3051
2.793585
CGGTACCACACGCTGTATGTAG
60.794
54.545
13.54
0.00
0.00
2.74
2593
3069
1.805910
GACGTCTTCTCCCGGTACC
59.194
63.158
8.70
0.16
0.00
3.34
2648
3127
2.705658
TGGACCTGAACTGAACACAGAT
59.294
45.455
0.00
0.00
35.80
2.90
2772
3278
0.391661
GACATCGCCGGCATATCCAT
60.392
55.000
28.98
3.98
34.01
3.41
2775
3281
3.876300
GGACATCGCCGGCATATC
58.124
61.111
28.98
16.94
0.00
1.63
2902
3447
8.325421
TGATGAATAAACTTGGCTTTTACGTA
57.675
30.769
0.00
0.00
0.00
3.57
2903
3448
7.209471
TGATGAATAAACTTGGCTTTTACGT
57.791
32.000
0.00
0.00
0.00
3.57
2904
3449
8.514136
TTTGATGAATAAACTTGGCTTTTACG
57.486
30.769
0.00
0.00
0.00
3.18
2905
3450
9.476202
ACTTTGATGAATAAACTTGGCTTTTAC
57.524
29.630
0.00
0.00
0.00
2.01
2937
3482
1.064824
AAGCCCATCTGATCTCCCCC
61.065
60.000
0.00
0.00
0.00
5.40
2981
5019
1.222936
GGTCCACTGCCCTCATCTG
59.777
63.158
0.00
0.00
0.00
2.90
2987
5025
1.072266
TTACATTGGTCCACTGCCCT
58.928
50.000
9.07
0.00
0.00
5.19
3038
5076
3.679389
AGGCACGATTTCAAATGAGAGT
58.321
40.909
0.00
0.00
0.00
3.24
3114
5163
0.255033
AGGAATTTGGGTACTCCGGC
59.745
55.000
0.00
0.00
38.76
6.13
3116
5165
2.027561
TGTGAGGAATTTGGGTACTCCG
60.028
50.000
0.00
0.00
38.76
4.63
3134
5183
1.294659
GAAAGCCTCGCTGGACTGTG
61.295
60.000
0.00
0.00
39.62
3.66
3136
5185
1.743252
GGAAAGCCTCGCTGGACTG
60.743
63.158
0.00
0.00
39.62
3.51
3137
5186
2.665603
GGAAAGCCTCGCTGGACT
59.334
61.111
0.00
0.00
39.62
3.85
3140
5189
3.901797
AACGGGAAAGCCTCGCTGG
62.902
63.158
0.00
0.00
39.62
4.85
3142
5191
2.358737
CAACGGGAAAGCCTCGCT
60.359
61.111
0.00
0.00
42.56
4.93
3164
5213
3.685139
TTCTGGACCTTGATGACTCAC
57.315
47.619
0.00
0.00
0.00
3.51
3174
5223
5.479124
ACATAGTACGTTTTCTGGACCTT
57.521
39.130
0.00
0.00
0.00
3.50
3187
5236
3.851969
CGCCATGCACTATACATAGTACG
59.148
47.826
1.64
0.00
41.44
3.67
3192
5241
2.353704
GCTCCGCCATGCACTATACATA
60.354
50.000
0.00
0.00
0.00
2.29
3193
5242
1.609061
GCTCCGCCATGCACTATACAT
60.609
52.381
0.00
0.00
0.00
2.29
3194
5243
0.249868
GCTCCGCCATGCACTATACA
60.250
55.000
0.00
0.00
0.00
2.29
3195
5244
2.533318
GCTCCGCCATGCACTATAC
58.467
57.895
0.00
0.00
0.00
1.47
3216
5265
1.750399
CCCCAATCGCCACAAGAGG
60.750
63.158
0.00
0.00
0.00
3.69
3217
5266
1.750399
CCCCCAATCGCCACAAGAG
60.750
63.158
0.00
0.00
0.00
2.85
3218
5267
2.196997
CTCCCCCAATCGCCACAAGA
62.197
60.000
0.00
0.00
0.00
3.02
3219
5268
1.750399
CTCCCCCAATCGCCACAAG
60.750
63.158
0.00
0.00
0.00
3.16
3220
5269
2.354729
CTCCCCCAATCGCCACAA
59.645
61.111
0.00
0.00
0.00
3.33
3221
5270
3.727258
CCTCCCCCAATCGCCACA
61.727
66.667
0.00
0.00
0.00
4.17
3222
5271
4.506255
CCCTCCCCCAATCGCCAC
62.506
72.222
0.00
0.00
0.00
5.01
3238
5287
1.380380
CCAGAACCATGCTTCCCCC
60.380
63.158
0.00
0.00
0.00
5.40
3239
5288
1.380380
CCCAGAACCATGCTTCCCC
60.380
63.158
0.00
0.00
0.00
4.81
3240
5289
1.380380
CCCCAGAACCATGCTTCCC
60.380
63.158
0.00
0.00
0.00
3.97
3241
5290
0.681243
GTCCCCAGAACCATGCTTCC
60.681
60.000
0.00
0.00
0.00
3.46
3242
5291
1.026718
CGTCCCCAGAACCATGCTTC
61.027
60.000
0.00
0.00
0.00
3.86
3243
5292
1.002134
CGTCCCCAGAACCATGCTT
60.002
57.895
0.00
0.00
0.00
3.91
3244
5293
1.903877
CTCGTCCCCAGAACCATGCT
61.904
60.000
0.00
0.00
0.00
3.79
3245
5294
1.450312
CTCGTCCCCAGAACCATGC
60.450
63.158
0.00
0.00
0.00
4.06
3246
5295
0.176680
CTCTCGTCCCCAGAACCATG
59.823
60.000
0.00
0.00
0.00
3.66
3247
5296
0.041238
TCTCTCGTCCCCAGAACCAT
59.959
55.000
0.00
0.00
0.00
3.55
3274
5469
0.105709
TGTCCGATCTCAGCCCCATA
60.106
55.000
0.00
0.00
0.00
2.74
3289
5484
0.329596
AGTTGGCCTTCCTCATGTCC
59.670
55.000
3.32
0.00
0.00
4.02
3314
5510
3.044894
ACTTCCTCCATCTTCCCTGATC
58.955
50.000
0.00
0.00
0.00
2.92
3317
5513
1.211457
CCACTTCCTCCATCTTCCCTG
59.789
57.143
0.00
0.00
0.00
4.45
3318
5514
1.203492
ACCACTTCCTCCATCTTCCCT
60.203
52.381
0.00
0.00
0.00
4.20
3323
5519
2.472029
CCACTACCACTTCCTCCATCT
58.528
52.381
0.00
0.00
0.00
2.90
3349
5545
0.375106
CTCCCGATTTGCTTCTTCGC
59.625
55.000
0.00
0.00
0.00
4.70
3360
5556
2.639839
CCCAAGTATGATCCTCCCGATT
59.360
50.000
0.00
0.00
0.00
3.34
3369
5565
3.200165
GGTATAGGCCCCCAAGTATGATC
59.800
52.174
0.00
0.00
0.00
2.92
3373
5569
4.173594
GTTAGGTATAGGCCCCCAAGTAT
58.826
47.826
0.00
0.00
0.00
2.12
3374
5570
3.590714
GTTAGGTATAGGCCCCCAAGTA
58.409
50.000
0.00
0.00
0.00
2.24
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.