>input_sequence_52422
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----------------------------------------------------------------------------ATGT
ATGTACATGCATGCCCGGTCCGGTCGGTCACGGAGACGAAGCCAGGACCGGGACAGCGAGCGGCTCGATGGTCGTCATCA
TCTCTGGCTTGGCTTTCTCTACCTCCCCACCACACCAC-CCCCCACGAAACCAACACCATCCGCGGCGACCCCTTCTTCC
CTTCCCTGAGACACTTCTCCCCAAAGCG----AACCCAGCTGAAAAGAAGCGAGACGCGCCGCGCCGCACCGCGTTGCCT
TTGTATATCGTGGCTCTATTTAGCTCAAGAGGAGA----------GGAGAGGAGAGGCGCGCGGGGAGGGGAAGGAGAT-
---------CAAATCAGATCAAACCGTAGGAAACCATCGATTGATCGAGCAGCGGCGGCGACGC----------GGAAGC
AGGAGGGGAG-G--GGGGATGGCGGTGGCGTATCGCGCGGAGGAGGAGTACGACTACCTGTTCAAGGTAGTGCTGATCGG
GGACAGCGGCGTGGGCAAGTCCAACCTGCTGTCGCGCTTCGCCAGGGACGAGTTCAGCCTCGACACCAGGTCCACCATCG
GCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGGCAAGCTCGTCAAGGCGCAGATCTGGGACACCGCCGGCCAAGAA
AGGTACCAATACTCCAAC-----------------CTCTTTCTTTTTTG----------------CCCGCCACCTGTATG
AGATATTGCTGCTTTGCCTGTCCACTTCTTTATTTCTTCCACCGCTCGTCGTCGATTCAGTTTAGTTTAGCTTGATCGAT
CGATCAATC-------GTAGTAATTGACCAACTCAAGGACTTGCGATGACTCCTTTCCCGT-------------------
----------------------TGCC-ATGCTTGTGATTTCAATACCATCTGG--AACAACTCATTCTCAACTGTGGCAA
G-------------------TATCT-----------------------------TTAGCAATGCAATGTGCAT-------
--------------------------------------------------------------------------------
-------------CTTTCTGGTTGC-------------------------------------------------------
--------------------------------------------TTGTAACCGCATTTCCACATTGACA-----------
-------------------CC--------------------AGTACCAAGTTGGTTAATCACTT----TGCGTACGTGCG
TTGCACCTGCACTCGCGGCGCTCTC--T-----------GTGTGTAGGTACCGGGCCATCACCAGCGCGTACTACCGGGG
CGCCGTGGGCGCGCTCGTGGTGTACGACGTGACGCGCCACATCACGTTCGAGAACGCGGAGCGGTGGCTGACGGAGCTCC
GCGACCACACGGACGCCAACATCGTGGTGATGCTGGTCGGGAACAAGGCGGACCTGCGCCACCTGAGGGCCGTCTCGCCC
GAGGAGGCCAGGGCCTTCGCGGAGCGCCACCGCACCTTCTCCATGGAGACCTCCGCGCTGGAGGCCACCAACGTGGAGGA
CGCCTTCACCGAGGTGCTCGGCGAGATCTACCGCGTCGTCAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGC
CGCCTAGGGGCAAGACCATCGACGTTGGCGGCAAGGACGACGTCACCCCGGTGAACACGGGCGGCTGCTGCTCGGCCTAG
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---
>chr3B_1_TraesCS3B01G272300
CAGCTTTGTCTGCGGGTAGAAGAAGTGGATAACAAACAGGATTAAGCTTTATCAGTTATTTGCTTCCGACAAACATTCAG
ATCAATTTTGTACATAAGAAGCGGTAGACTATTCTGCTACCTGTATTTGTTGTTCACCTTGTTGTGATGGGGAGTAACTC
GGCTTCCAAAAACTGTACAGACATAACATTGATCGTTCTATTCAAATGTAGAATGTTTATAAATTACTCAGTTGGACATA
CAGTGTATCATATGGTGGATCTGAAGGTAACTCTTAGAGTGGCATCTCTAGAAACTACCCTGTATATATGTTGGTTACCC
TAAAACAAACAGAAACATGTGTTTTTTGTGTACATTATTAAATCTTAAGAGAACTGATAATTGTTTCTGTTATTGGAGAG
ATTGGTCTGATAGTGGCCAGCCGAGCACTGAGTTTTTCAGCATATGGCTTTGGACGACAATGTTCTGTACTGTATAATGG
ATGATTCAACTCCGTCGTGCAGTTTGGTCGAAACATAAGAAACAAAACCTCGAATCTGAACTCGCTCCTATTTGTGATGG
AATTTATCTTAATTTTATTGCATTTCATGTGTATTTTCTGTCATTGTTTTTGTATCTTTTTTTTGAGGGAAAAAAGGAAA
AAGAAAAAAGATAGTGTTTTCGTATCTTTTAAGGAGACATATATAGTGTTTTTGTTTTCTTAGTGGCTGTACCGTACAAG
CAAAAGATAGTTTTGCCCTAGAACTCTTCCCCTAATATTATAGCACTAGCTTGTGCGCCGTACTTGATCGAAATATTGCG
TTGCTGCCTTGAGAGAATCTTCCCTGAAGGATCTCTGCACCCATCCCCAGCTAACAAAACGTGATGAG------------
-----------------------CGAAAATGAAAGGAGAAACAAAAGAGAATGCTACTACTACTACTACATGAAGCCAAG
TCAAGCCTGGCACATGCTTATATTCGCAAATTCAATTTTGTACATATCGTTTTGCGAGAT-GAGAGTCGTTGACACATGT
ATGTACATGCATGCCCGGTCCGGTCGGTCACGGAGACGAAGCCAGGACCGGGACAGCGAGCGGCTCGATGGTCGTCATCA
TCTCTGGCTTGGCTTTCTCTACCTCCCCACCACACCAC-CCCCCACGAAACCAACACCATCCGCGGCGACCCCTTCTTCC
CTTCCCTGAGACACTTCTCCCCAAAGCG----AACCCAGCTGAAAAGAAGCGAGACGCGCCGCGCCGCACCGCGTTGCCT
TTGTATATCGTGGCTCTATTTAGCTCAAGAGGAGA----------GGAGAGGAGAGGCGCGCGGGGAGGGGAAGGAGAT-
---------CAAATCAGATCAAACCGTAGGAAACCATCGATTGATCGAGCAGCGGCGGCGACGC----------GGAAGC
AGGAGGGGAG-G--GGGGATGGCGGTGGCGTATCGCGCGGAGGAGGAGTACGACTACCTGTTCAAGGTAGTGCTGATCGG
GGACAGCGGCGTGGGCAAGTCCAACCTGCTGTCGCGCTTCGCCAGGGACGAGTTCAGCCTCGACACCAGGTCCACCATCG
GCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGGCAAGCTCGTCAAGGCGCAGATCTGGGACACCGCCGGCCAAGAA
AGGTACCAATACTCCAAC-----------------CTCTTTCTTTTTTG----------------CCCGCCACCTGTATG
AGATATTGCTGCTTTGCCTGTCCACTTCTTTATTTCTTCCACCGCTCGTCGTCGATTCAGTTTAGTTTAGCTTGATCGAT
CGATCAATC-------GTAGTAATTGACCAACTCAAGGACTTGCGATGACTCCTTTCCCGT-------------------
----------------------TGCC-ATGCTTGTGATTTCAATACCATCTGG--AACAACTCATTCTCAACTGTGGCAA
G-------------------TATCT-----------------------------TTAGCAATGCAATGTGCAT-------
--------------------------------------------------------------------------------
-------------CTTTCTGGTTGC-------------------------------------------------------
--------------------------------------------TTGTAACCGCATTTCCACATTGACA-----------
-------------------CC--------------------AGTACCAAGTTGGTTAATCACTT----TGCGTACGTGCG
TTGCACCTGCACTCGCGGCGCTCTC--T-----------GTGTGTAGGTACCGGGCCATCACCAGCGCGTACTACCGGGG
CGCCGTGGGCGCGCTCGTGGTGTACGACGTGACGCGCCACATCACGTTCGAGAACGCGGAGCGGTGGCTGACGGAGCTCC
GCGACCACACGGACGCCAACATCGTGGTGATGCTGGTCGGGAACAAGGCGGACCTGCGCCACCTGAGGGCCGTCTCGCCC
GAGGAGGCCAGGGCCTTCGCGGAGCGCCACCGCACCTTCTCCATGGAGACCTCCGCGCTGGAGGCCACCAACGTGGAGGA
CGCCTTCACCGAGGTGCTCGGCGAGATCTACCGCGTCGTCAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGC
CGCCTAGGGGCAAGACCATCGACGTTGGCGGCAAGGACGACGTCACCCCGGTGAACACGGGCGGCTGCTGCTCGGCCTAG
TCAAACTCTCTCCCTCTCTATCTCTCTCTGCCGGAGACGGTGGTAGGTGATGCCGTGTGTGTGCGTGCTAGGGTGTAACA
GGCATGTTGCGACCGTGATGATTATTGGTTATTGGTCAAAACGCTCTGGGGGTGGTTGATACCTTGATATCATATGCTTG
ATTGATACTAC---TACATACAGCGTGTGG---TACCGGGAGAAGACGTCGTGCGTGTGATGTTGCAAGTTGCAACCACG
GTCCGCATCTGTGTT---------------------------CAGTTCAGGTCCAAAAAAACGCGTTAGGGTGTGACAAT
TTTCGGTCAAGGCGCTTCATCATCAGGTAAAAAATAGAAGCGACTCCGATGAAGACGAAACGGCCGTCGTGCAGAAAATG
GATATGCCGGCGATGTCCGCGTCGGAACACGGCCGCGGAAGGATATGCATAATTTAAGAACATGATTATGCGTTGACGCA
AGCCCTACCAGCGCAGGACGGCCGCAGAACGCT---------------------------------------TTTTTTTA
GGGATATACGTAAAAGCCAAGTTTATTCATCAAAGTCCACGG--------------------------------------
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------------------------------------------------------------GGGGAGATCAGATGGGCTTT
AAGGTTAACCAAGCAGTTGCG-----------------------------------ATCAGATGAGGGCAGTGGACCAAT
GTAACTAGGCGTGTGATCCACTTTACCAGACACACACTCTCATTTGAAATCGTGCCTACGGGTAGAACCTCAAGGCGTTC
CCCTAGGGTT-----------TCTCTTCCTCCGGGCGACTGCGCCGGAGTACCCAAATTCCTCACAGTCCAGCGAGGCTT
TCCCGTTGGGGCGTGAGTCATCAAGGTCCAGAAAACGTACTATGTATAGTGCATGGCGGAGCCGCCTCTTGTGGCGATTG
GGGGAGGGGGGAAGCA----------------------------------------------------------------
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--TGGTTCTGGGGACGAGAGAGAGGAAGTATGGGGCTGAGATCGGACATGAGGA-AGGCCAACTGAACAGATCAGGGAAG
ATGGAGGAAGTGGTAGTGGGGGTCGCGAAGAAGCAAATCGGGAGGATCATACTTGGGGGCCTATACCTAACCTTGAAGAT
CGT
>chr3A_1
CAGCTTTGTCTGCGGGTAGAAGAAGTTGATAACAAACAGGATTAATCTTTATCAGTTATTTGCTT--GACAAACATTCAG
ATCAATTTTGTACATAAGAAGCGGTAGACTATTCTGCTACCTGTATTTGTTGTTCACCTTGTGATT---GGGAGTAACTC
GGCTTCCAAAAACTGTACAGACATAACATTGATCGTTCTATTCAAATGTAGAATGTTTATAAATTACTCAGTTGGACATA
CAGTGTATCATATGGTGGATCCGAAGGTAACTCTTAGAGTGGCATCTCTAGAAACTACCCTGTATATATGTTGGTTACCC
TAAAACAAACAGAAACATGTGTTTTTTACATTATTTATT-AATCTTAAGAGAACTGATAATTGTTTCTGTTATTGGAGAG
ATTGATCTGAGAGTGCCCAGCCGAGCAC-GAGTTTTTCAGCATATGGCTTTGGACGACAATGTTCTGTATTGTATAATGG
ATTATTCAACTCCGTCGTGCAGTTTGGTTGAAACATGAGAAACAAAACCTCGAATCTGAACTCGCTCGTGTTTATGATGG
GCTTTGCCTTAATTTTATTGCATTATATTTGTATTTTCTGCCATTGTTTTCATATCTTTTAATAAGGGGAC---------
----------------------------------------ATATGGTGTTTTTGTTTTCTTAGTGGCTGTACCGTACAAG
TAAAAGATAGTTTTGCCCTAGAACTCTTCCCCTAATATTATAG------CTTGTGCGCCGTACT----------------
----TGCCTTGAGAGAATCTTCCCTGAAGGATCTCTGCACCCATCCCCAGGTAACAAAACGTGATGAAGGAAGGCCAGTC
GCGCCAACTGCCAAATGAGCACACGAAAATGAAAGGAGAAGCAAAGAGAATG----CTACTACTACTACATGAAGCCAAG
TCAAGCCTGGCACATGCTTATATTCGCAAATTCAATTTTGTACATATCGTTTTGCGAGAT-GAGAGTCGTTGACACATGT
ATGTACAGAGATGCATGC-CCGGTCGGTCACGGAGACGAAGCCAGGACCGGGACAACGAGCGGCTCGATGGTCGTCATCA
TCTCTCGCTTGGCTTTCTCTACCTCCCCACCAC------CCCCCACGAAACCAACGCCATCCGCGGCGACCCCTTCTTCC
CTTACCTGAGACACTTCTCCCCAAAGCGAACCAACCCAGCTGAAAAGAAGCGAGACGCGCCGC-----ACCGCGTTGCCT
TTGTAT--CGTGCCTCTATTTAGCTCAAGAGGAGAGGATAGGAGAGGAGAGGAGAGGCGCGCGGGAAGGGGAAGGAGAT-
---------CAAATC----------TTAGGAAACCATCGGTTGATCGAGCAGCGGCGGCGACGCAGAAGCAGCAGGAAGC
AGGAGGGGAG-G--GGG-ATGGCGGTGGCGTATCGCGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGG
GGACAGCGGCGTGGGCAAGTCCAACCTGCTGTCGCGCTTCGCCAGGGACGAGTTCAGCCTCGACACCAGGTCCACCATCG
GCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGGCAAGCTCGTCAAGGCGCAGATCTGGGACACCGCCGGCCAAGAA
AGGTACCAATACTCT----------CCACCTCCTGCTCCTTCTCTTTTG----------------CCCGCCACCTGTATG
AGATATTGCTGCTTTGCCTGTCCACCTCTTTCTTTCTCCCACCGCTTGCCGTCGATTCAGTTTAGTTCAGCTTGATCGAT
CGATCGATCGATCGTAGTAATTGATGACTAACCCAAGGACTTGCGATGACTCCTTTCCCGT-------------------
----------------------TGCC-ATGCTTGTGATTTCAATAGCAATCTGTAAACAACTCACTCTGAACTGCAGATG
TCCTTCGAAA-TAGGAGTATCTTTA-----------------------------TTAGCAATACAATGTGCAT-------
--------------------------------------------------------------------------------
-------------CTTTCTGGTTGC-------------------------------------------------------
--------------------------------------------GTGTAACCGCATTTCCACATTGACA-----------
-------------------CC--------------------AGTACCAAGTTGGCTAATCACTTTACGTACGTGCGTGCG
TTGCACTCGCACCCGCGGCTCTCTCTAT-----------GTGTGTAGGTACCGGGCCATCACCAGCGCCTACTACCGGGG
CGCCGTGGGCGCGCTCGTGGTGTACGATGTGACGCGCCACATCACGTTCGAGAACGCGGAGCGGTGGCTGACGGAGCTCC
GCGACCACACGGACGCCAACATCGTGGTGATGCTGGTCGGGAACAAGGCGGACCTGCGCCACCTCAGGGCCGTCTCGCCC
GAGGAGGCCAGGGCCTTCGCGGAGCGCCACCGCACCTTCTCCATGGAGACGTCCGCGCTGGAGGCCACCAACGTGGAGGA
CGCCTTCACGGAGGTGCTCGGCGAGATCTACCGCGTCGTCAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGC
CGCCCAGGGGCAAGACCATCGACGTCGGCGGCAAGGACGACGTCACCCCGGTGAACACGGGCGGCTGCTGCTCGGCCTAG
TCAAACTCTCTCCCTCTT----TCTCTCTGCCGGAGACGGTGGTAGGTGATGCCGTGTGTGTGCGTGCTAGGGTGTAACA
GGCATGTCGCGACCGTGATGATTATTGATTATTGGTCAAAACGCTCTGGGGGTGGTTGATACCTTGATATCATATGCTTG
ATTGATACGTACTATACATACAGCGTGTAGTACTACCGGGAGAAGACGTCGTGCGTGTGTTGTTGCAAGTTGCAAGCACG
GTCCGCGTCCGTGTTCACTCCATTTCATTGGTCTGTTTGGTGCAGTTCAGGTCCAAAAAAACGCGTTAGGGTGTGACAAT
TTTCGGTCAAGGCGCTTCATCATCAGGTAAAAAATAGAAGCGACTCCGATGAAGACGAAACGGCCGTCGTGCAGAAAGTG
CATATGCCGGCGATGTCCGCGTCGGAACACGGCCGCGGAAGGATATGCATAATTTAAGAACACTATTATGCGTTGACGCA
AGCCCTACCAGCTCAGGACGGCGGGTGGGATCGGAGAAGGATATTGCAAAATGCCTAGCATCTTTTTTTAGCTTCTTTAA
GGGATA----TAAAAGCCAAGTTTATTTATCAAAGTCTACATGGTGTGGGATACAACTCCGATCATGTGAAACTGGGCTT
TAAGGTTAACAGAAGAGGTCATATTTGATGAGTGGGAAATGGACAAAAAATTAACATTTGAGAAGATGCATGTATCTCAA
ATTGTGTCACTAGAAAAATTATAACGCCTAAGG-GGGGCATCTGTTAACTGAGG-AGATGATCTCACTGATCCTGCCTCC
AACAATTGGGATGAACACCTAATCAGATAAACTATGTGGCCCATTGATGCACAACGGATTCTTTCAGTTTCACTCTCGCA
ACATGATATGCCAGATTTCATTGTTTGGAGTTATACGAAAAATGGTATATTCTCGGTTCGACCAGCTTATTCCGTGGAGT
GGGACCATCAGTATGGCAGCAAATTAAAATACTCTAATGGGATGGGACGAACCACAGTTAACCCTATTTGAAACAAGATA
TGGAAGTTATCTTGTCCGACAAAAGTTATTTTTTTTATATGGCGTACACTATATGGAACACTCCCCCACCGGGTTACGCT
CGCTAATAGACATATGAAGGTCTCGCCCATTTGTCCCACTTGCTTTGAGGGCTTAGAAGATACGAAGCATATGCTTTTCC
GTTGTAGTAAAGAAAATGGGGTTTGGGAAAGGCTGGGGATGGATGATATTATTGATAAAGCTTGCGAGATTGACCATTCT
GGAGAGGCAGTGTTAAAGTACTTACTACTTCTTCCGGGCCAAGGTTTGAGGATAATGGATTACCACAATGTGCGTGAGAT
GATTGCTGTCTCAGCATGGTATTTATGGTGGGAAAGACGAAAGTTGATGCACAAGGAGAAAACTCAAAATGCACTTCAGA
TTTCAATGGGGGTTCTAGCCCTTACCACAAACTTCATAAATGCATTGTCCCCCAAGGCTTCTAC---GAAGGAGGATGGT
CTTGTCCCCCCAGAGCTTTTGTGAAACTTAACACTGATGCTTCTTTTGACCATGACCTGCTTAGGGGAACAATGGGGGGC
AG---------------------ATTTATTGCTAGAGGGATTGGAAAGATTGACTATTGCGTGGATGTGTTGATGGCGGA
AGCTTTAGCCCTCAAGTTTGGTCTAACACTAGCGCAAAGGGCGGGATGTAATCGTCTTATTATTAACTCAGACAACATGA
AGGTGATTGATACTATGCAGGATGGAGGACAGTCAGCAAGCACGACAACAACAATCTTCGACGA-TTGTTTTCATTATGC
ATGTGATTTCATTACTACTAGATTTGAACATTGTAATAGAGAAGCAAATAAAGTAGCTCATGAGCTCGCTAGATTAGCTA
GATTTTCTTTGACTTCTGTTTGGTTTGAGGAACCATTAAATGAAATTGTAATGCTCCTCGCAAACGATGTACTATTTATC
TCTAATGAATAAGACTTCGGTGTTTTTTTAAAGAGTTGTGATCAGTTTTTTATTTTTTGAGGGGAGATCAGATGGGCTTT
AAGGTTAACCAAGTAGTTGCGATCAAATG---------------------------------------------------
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>chr3D_1
CAGCTTTGTCTGCGGGTAGAAGAAGTGGATAACAAACAGGATTAATCTTTATCAGTTATTTGCTTCCGACAAACATTCAG
ATCAATTTTGTACATAAGAAGCGGTAGACTATTCTGCTACCTGTATTTGTTGTTCACCTTGTTGTGATGGGGAGTAACTC
GGCTTCCAAAAACTGTACAGACATAACATTGATCGTTCTATTCAAATGTAGAATGTTTATAAATTACTCAGTTGGACATA
CAGTGTATCATATGGTGGATCGGAAGGTAACTCTTAGAGTGGCATCTCTAGAAACTACCCTGTATATATGTTGGTTACCC
TAAAACAAACAGAAACATGTGTTTTT-GTGTACATTATTAAATCTTAAGAGAACTGATAATTGTTTCTGTTATTGGAGAG
ATTGGTCTGATAGTGCCCAGCCGAGCAC-GAGTTTTTCAGCATATGGTTTTGGACGACAATGTTCTGCACTGTATAATGG
ATGATTAAACTCCGTCGTGCAGTTTGGTCGAAACATGAGAAAAAAACCTCGTATCTCCTA-----------TTGTGACGG
GATTTGTCTTAATTTCATTGCA---CATGTGTATTTTCTGTCATTGTTTTCGTATCTTTTAAGGAGGC------------
------------------------------------------ATAGTGTTTTTGTTTTCTTAGTGGCTGTACCGTACAAG
TAAAAAATAGTTTTGCCCTAGAACTCTTCCCCTGATATTATAGTACTAGCTTGTGCGCCGTGCTTGATCGAAATGTTGCG
TTGCTGCCTTGAGAGAATCTTCCCTGAAGGATCTCTGCACCCATCCCCAGCTAACAAAACGTGATGAG------------
-----------------------CGAAAATGAAAGGAGAAGCAAAGAGAATG----CTACTACTACATGAAGCCAG---G
TCAAGGCTGGCACATGCTTATATTCGCAAATTCAATTTTCTA-ATATCGTTTTGTGAGATAGAGAGTCGTTGACACATGT
ATGCACAGAGATGCATGC-CCGGTCGGTCACGGAGACGAAGCCAGGACCGGGACAACGAGCGGCTCGATGGTCGTCATCA
TCTCTGGCTTGGCTTTCTCTACCTCCCCACCACACCACCCCCCAACGAAACCAACACCATCCGCGGCGACCCCTTCTTCC
CTTCCCTGAGACACTTCTCCCCAAAGCGAACCAACCCAGCTGAAAAGAAGCGAGACGCGCCGC-----ACCGCGTTGCCT
TTGTAT--CGTGCCTCTATTTAGCTCAAGAG---------GGAGAGGATAGGAGAGGCGCGCGGGAAGGGGAAGGAGATA
AAATCAGATCAAATC----------GTAGGAAACCATCGGTTGATCGAGCAGCGGCGGCGGCGCAGAAGCAGCAGGAAGC
AGGAGGGGAG-G--GGGGATGGCGGTGGCGTATCGCGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGG
GGACAGCGGCGTGGGCAAGTCCAACCTGCTGTCGCGCTTCGCCAGGGACGAGTTCAGCCTCGACACCAGGTCCACCATCG
GCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGGCAAGCTCGTCAAGGCGCAGATCTGGGACACCGCCGGCCAAGAA
AGGTACCAATACTCT----------CCACCTCTTGCTCTTTCTCTTTTG----------------CCCGCCACCTGTATG
AGATATTGCTGCTTTGCCTGTCCACCTCTTTCTTCTTTCCACCGCTCGCCGTCGATTCAGTTTAGTTTAGCTTGATCGAT
CATACA----------GTAGTAATTGACTAACTCAAGGACTTGCGATGATTCCTTTCCCGT-------------------
----------------------TGCC-ATGCTTGTGATTTCAATAGCAATCTGTAAATAACTCATTCTCAACTGCAGATG
TCCTTCGCAAGTAGGGGTATCTTTTTTTTTTTGATCTACGCAAGTAGGGTTATCTTAGCAATACAATGTGCAT-------
--------------------------------------------------------------------------------
-------------CTTTCTGGTTGC-------------------------------------------------------
--------------------------------------------TTGTAACCGCATTTCCACATTGACA-----------
-------------------CC--------------------AGTACCAAGTTGGCTAATCACTT----TACGTACGTGCG
CTGCACTTGCACCCGCGGCTCTTTCTC-------------TCTGTAGGTACCGGGCCATCACCAGCGCGTACTACCGGGG
CGCCGTGGGCGCGCTCGTGGTGTACGACGTGACGCGCCACATCACGTTCGAGAACGCGGAGCGGTGGCTGACGGAGCTCC
GCGACCACACGGACGCCAACATCGTGGTGATGCTGGTCGGGAACAAGGCGGACCTGCGCCACCTGAGGGCCGTCTCGCCC
GAGGAGGCCAGGGCCTTCGCGGAGCGCCACCGCACCTTCTCTATGGAGACGTCCGCGCTGGAGGCCACCAACGTGGAGGA
TGCCTTCACGGAGGTGCTCGGCGAGATCTACCGCGTCGTCAGCAAGAAGGCCCTCGACATTGGCGACGACCCCGCCGCGC
CGCCCAGGGGCAAGACCATCGACGTTGGTGGCAAGGACGACGTCACCCCAGTGAACACGGGTGGCTGCTGCTCGGCCTAG
TCAAACTCTCTC--------------TCTGCCGGAGACGGTGGTAGGTGATGCCGTGTGTGTGCGTGCTAGGGTGTAACA
GGCATGTTGCGACCGTGATGATTACTGATTATTGGTCAAAACGCTCTGGGGGTGGTTGATACCTTGATATCATATGCTTG
ATTGATAC---------ATACAGCGTGTAGTACTACCGAGAGAAGACGTCGTGCGTGTGCTGTTGCAAGTTGCAACCATG
GTCCGCGTCTGTGTTCACTCCATTTCATTGGTCTGTTTGGTGCAGTTCAGGTCCAAAAAAACGCGTCAGGCTGTCACAAT
TTTCGGTCAAGGCGCTTCATCATCAGGTAAAAATTAGAAGCGACTCCGATGAAGACGAAACGGCCGTCGTGCAGAAAGTG
CATATGCCGGCGATGTCCGCGTCGGAACACGGCCGCGGAAGGATACGCATAATTTAAGAACATGATTATGCGTTGGCGCA
AGCCCTACCAGCGCGGGACGACGGGTGGG-----AGAAGGATATTGCAAAATGCCTAGCATCTTTTTTTAGCTTTTTTTA
GGGATA----TAAAAGCCAACTTTATTCATCAAAGTCCACATGGTGTGGGATACAACTCCGATCATGTGAAGCTGGGCTT
TAAGGTTAACCAAAGAGGTCATATTTGGCGAGTGGGGAATGAACAAAAAATTAACATTTGAGAAGATGCATGGATCCCAA
AGTATGCCACTAGAAAAATTGTAACGTCTAAGGAGGGACATCTGTTAACTAAGGTAGATGATCTCATTGATCCTGCCTCC
AACAATTGGGATGAACACCTAATCAGACAAACTATGTGGCCCATTGATGTACAACAGATTCTTTTAGTTCCACTCTCGCA
ACATGATATGCCAGATTTCATTGCTTGGAGTTATACGAAAAATGGTATGTTCTCGGTTCGACCAGCTTATTCCGTGGAGT
GGGACCACCAGTATGACAGCAAATTAAAATACTCTAATGGGATGGGACGAACCACAGTTAACCCTATTTGGAACAAGATA
TGGAAGTTATCTTGTCTGACAAAAGTTAATTTTTTTATATGGCGTACACTACATGGAACACTCCCCTGCCGGGTTACGCT
CGCTAATAGACATATGAAGGTCTCGCCCATTTGTCCCACTTGCTTTGAGGGCTTAGAAGATACGAAGCATATGCTTTTCC
GTTGTAGTAAAGCAAAGGGGGTTTGGGAAAGGCTGGGGATGAACGATATTATTGATAAAGCTTGCGAGATTGACCATTCT
GGAGAGGCAATGTTGGAGTACT---TACTACTTCCGGACCAAGATTTGAGGATAATGGATTACCACAATGTGCGTGAGAT
GATTGCTGTCTCGGCATGGTATTTATGGTGGGAAAGACGGAAGTTGGTGCACAGGGAGAAAACTCAAAATGCACTTCAGA
TTTCAATGGGGTTTCTAGCCCTTACCACAAACTTCGTAAATGCATCGTCCCCCAAGGCTTCTACGAAGAAGGAGGATGGT
CTTGTCCCCCCAGAGGTTTTGTGAAACTTAACATTGATGCTTTTTTTGACCATGACCTGCTTAGGGGCATGATAGGGGCG
GTCCTGAGATATGACAAAGGCATATTTATTGCTGGAGGGAATGGGAAGATTGACTATTGCGCGGATGTGTTGACGGCGGA
AGCTTTAGCCCTCAAGTTTGATCTAACACTAGCGCAAAGGGCGGGATGTAATCGCCTTATTATTAACTCGGACAACATGG
AGGTGATTGATACTATGCAGGATGGAGGACAGTCAGCGAGCGTGGCAGCAACAATCTTCGACGATTTGTTTTCATTATGC
ATGTGATTTCATTGCTACTAGATTTGAACATTGTAATAGAGAAGCAAATAAAGTAGCTCATGAGCTCGCTAGATTAGCTA
GATTTTCTTTGACTTATGTTTGGTTCGAGGAACCGTTAAATGAAATTGTAATGCTCCTCACAAACGATGTACTATTTATC
TCTAATGAATAAAGCTTCGGTGTTTTTCTAAAGAGTTGCGATCAGTTTTTTATTTTTTGAGGGGAGATCAGATGGGCTTT
AAGGTTAACCAAGCAGTTGCGATCAGATGGGCTTTAAGGTTAACCAAGCAATCGCTATTAGATGGGGGCAGTGGACCAAT
GTAACTAGGCGTGTGATCCACTTTACCAGACACACCCTCTCATTTGAAACCGTGCCTACGGGTAGAACCTCGAGGCGTTC
CCCTAGGGTTCCTCTAGGGGTTCTCTTCCTCCGGGCGACTGCACTGGAGTACCCAAATTCCTGATGGTTCGGCGAGGCCT
TCCCGTTGGGGCTTGAGTCATCGAGGTCCAGAAAATGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGGTTCTGGGGACGAGAGAGAGGAAGGATGGGGCTGAGATCAGACATGAGGAGAGGCCGACTGAACATATTGGGGAGG
ATGGAGGAAGTGGTAGTGGGGGTCACGAAGAAGCAGATCGGGAGAATCGAACTTGGGGGCCTATACCTAACCTTGAAGAT
TGT
>chr1D_1358
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----------------------------------------------------------CGACGA----------GGAAGA
AGAAGGCGGCCGGAGGGGAGGGAGATGGCGTACAGGGCGGAGGACGACTACGACTACCTGTTCAAGGTGGTGCTGATCGG
GGACTCGGGGGTGGGCAAGTCCAACCTGCTCACCCGCTTCACCCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCG
GCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAG
AGGTAACCCATCCCCCCATCCATTCCAACCCCCAGATCCATTCCTCCCCTCCCTGCCCTGCCGTTACAGCAGCCGCTGTG
TCATGTGGA---------------------TCTCATGGCCCCTTGTTGTCGGCGATCCTTGGATGCTGCTGCT-----GC
AGCAGCACACGCTGCTGTGTTCGATTCAAATGCTCCACTGAATGTCGAGATTCGGTTTGGCATTGCCTCGATCCATACAT
AGCTTTCCATGGCTGAGCAGCCTGACCATGCTTC-----AGGTTCAGGGTATCA--------------------------
--------------------CATTT-----------------------------TTAGCAATGTGCTGTTGCAACTGAAG
ATTGTGTAGGGCCAGGAGATGACCCTGATATAG----ACTGTACATGCAATCCAGCTGTTAGAGAGTAGAGCATATGTGC
TTTGGGGAACATGCTTGCTGGTTGACGAGGAAACATCTTGTAGCCATCAATTACAACTCCTGTGCTGAACAATTTGCAAT
CATCAATTAGACA----CAGGAACCTTTTAATTGAGAGCGACTAATTTAACTGCCTGGGTTCAGTGAGA-----------
-------------------GCGACCATACATGCTCATTTGCTGTTAAACTGCT---------------------------
----ACCCGCACCGGCGACTGATCAT------------CGTCTGCAGGTACCGGGCGATCACAAGCGCGTACTACCGCGG
GGCGGTGGGCGCCCTGGTGGTCTACGACGTCACGAGGCACGTCACCTTCGAGAACGTCGAGAGGTGGCTGAGGGAGCTCA
AGGACCACACGGACGCCAACATCGTGATCATGCTCGTGGGGAACAAGGCGGACCTGCGCCACCTCAGGACCGTCCCGTCC
GAGGACGCCAAGGCCTTCGCCGAGCGCGAGAACACCTTCTTCATGGAGACGTCCGCCCTCGAGGCGATGAACGTCGAGGA
CGCCTTCACCGAGGTGCTCTCGCAGATCTACCGCGTGGTGAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGC
CCCCCAAGGGCAAGACCATCAACGTCGGCTCCAAGGACGACGTGTCCGCGGTGAA-------------------------
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>chr1A_1371
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-GGAGGGGAGAG--GGAGAGGGAGATGGCTTACAGGGCGGAGGACGACTACGACTACCTGTTCAAGGTGGTGCTGATCGG
GGACTCGGGGGTGGGCAAGTCCAACCTGCTCACCCGCTTCACCCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCG
GCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAG
AGGTACCCAT----CCCCCCCATTCCAGTCCCCAGATCCA--CCCCCCCTCCCTCCCCTGTCGTTACAGCAGCCGGTGTG
CCATGTGGA---------------------TCTCATGACCCCTTG--------GATGCTTGGAA------GCT-----GC
AGAAGCATACACTGCTGTGTTCGATTGAAATGCTTCACTGGATGTTGAGATTTGATTTGGCATTGTGTCGATCCATACAT
AGCTTCCCATGATTGGGCGACCTGCC-ATGCTTCACTGAAGGTTCAGGGTATCA--------------------------
--------------------TATTT-----------------------------TTAGCAATGTGCTGCTGCAACTGAAG
ATTGTGTAGGGCCAGGAGCTGACCCTGATATAG----GCTTTACATGCAGTCCAACTGTTAGAGCATA----ATATGGGG
TTTGGGGAACATGCTTGCTAGTTGACGAGGAAACATCTTGTAGCCATCAATTACAACTCCTGTGCTGAACAATTTGTAAT
CATCAATTGGGCAA------------------TGAGAGTGACTATTTTAATTGCCTGTGTTCAGTGAGA-----------
-------------------GC--------------------TGTTCAACTGTT---------------------------
----ACCTGCGCCAGCGACTGATCGTCGATTTGCGCTGCGTCCGCAGGTACCGGGCAATCACGAGCGCGTACTATCGCGG
GGCGGTGGGCGCCCTGGTCGTCTACGACGTCACGAGGCACGTCACCTTCGAGAACGTCGAGAGGTGGCTGAGGGAGCTCA
AGGACCACACGGATGCCAACATCGTGATCATGCTCGTGGGGAACAAGGCGGACCTGCGCCACCTCAGGGCCGTCCCGTCC
GAGGACGCCAAGGCCTTCGCCGAGCGGGAGAACACCTTCTTCATGGAGACGTCCGCCCTCGAGGCGATGAACGTCGAGGA
CGCCTTCACCGAGGTGCTCTCCCAGATCTACCGCGTGGTGAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGC
CCCCCAAGGGCAAGACCATCAACGTCGGCTCCAAGGACGACGTCTCCGCGGTGAA-------------------------
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>chr1B_1392
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-------------------------TGGCGTACAGGGCGGAGGACGACTACGACTACCTGTTCAAGGTGGTGCTGATCGG
GGACTCCGGGGTGGGCAAGTCCAACCTGCTCACCCGCTTCACCCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCG
GCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAG
AGGTAAACCCTA----CCCCCATTCCAACCCCCAGATCCATTCCTCGTC----------------ACAGCAGCTGGTGTG
GCATGTGGA---------------------TCTCATGGCCCCTTGTCGTCGGCGATTCTTGGATGATGCTGCAGGCCAGC
AGCAGCACACGCTGCTGCGTTCGGTTGAAATGCTTCACTGAATGTTGAGATTTGATTTGGCATTGCCTCGATCCATACAT
AGCTTTCCATGGCTGAGCAGCCTGAC-ATGCTTC-----AGGTTCAGGGTATCA--------------------------
--------------------CATTT-----------------------------TTAGCAATGCGCTGTTGCAGCTGAAG
ATTGTGTAGGGCCAGGAGCTGACCCTGATATAGACTGACTGTACATGCAATCCTGTGCT---------------------
------GAACATGCTTGGAAC--------------TCTTGTAGCCATCAATTACAACTCCTGTGCTGAACAATTTGTAAT
CAGAGGTCGATTAGACGCAGGAACCTTTTAATTGAGAGCGACTAATTTAACTGCCCATGTTCATCAATGAGAGCGACCAT
ACATGATACATGCCCATTTGC--------------------TGTTCAGCTGTT---------------------------
----ACCCGCGCCGGCGACTGATCGTCGGTTTGCGCTGCGTCCGCAGGTACCGGGCGATCACGAGCGCGTACTACCGCGG
GGCGGTCGGCGCCCTGGTGGTCTACGACGTCACGAGGCACGTCACCTTCGAGAACGTCGAGAGGTGGCTGAGGGAGCTCA
AGGACCACACGGACGCCAACATCGTGATCATGCTCGTGGGGAACAAGGCCGACCTGCGCCACCTCAGGGTCGTCCCGTCC
GAGGACGCCAAGGCCTTTGCCGAGCGCGAGAACACCTTCTTCATGGAGACGTCCGCCCTCGAGGCGATGAACGTCGAGGA
CGCCTTCACCGAGGTGCTCTCCCAGATCTACCGCGTGGTGAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGC
CCCCCAAGGGCAAGACCATCAACGTCGGCTCCAAGGACGACGTCTCCGCGGTGAA-------------------------
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---
>SNPs
---------------------------------------------S----------------------------------
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---------------------S----------------------------------------------------------
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---------------S------------S---------------------------------------------------
------------------------------------S------------------------------S-S----------
S----S------------------S-------------------------S---------SS-SSS----SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
S------------------------------------------S------------------------------S-----
--------------------------------------------------------------------------------
----------------------------------------S----SSSS-SSSSSS------------------------
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-------SSS----SS-SS------------------------------------S------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------SSSSS------------
------SS----S----------------------------------------------------S--------------
---------------SSSSSSSSSS--------------S----------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
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---------------SS--------------------------S------------------------------------
-------------------------S-----S------------------------------------------------
----------------------------S---------------------------------------------------
---------------------------------------------S--SSSS----------------------SS-SSS
S----------------------S--------------------------------------------------------
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------------------------------------------------------S--------------S----------
------------S------S------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-----------------SSSSS----------------------------------------------------------
---------------------------S----------------------------------------------------
--------SSS-----------------S------------------------------S--------------------
------S-------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
S-------------------------------------------------------------------------------
----------------------S-SS-SSSS-S-----------------------------------------------
------SSSS------------------------------SS--------------------------------------
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----------------------------------------------------------S-----S---------------
-----------------------------------S-------------S---------------------S--------
------------------------------------------S-S-----------------S-SS--S-S-------S-
------------S---------S------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S--------------S----------------S--------S--SS----S-
------------------------S----------S--------S---SS------------------------------
S--
>forward_721
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-------------------------------------------------------------AGTGGCTGTACCGTACAAG
C-------------------------------------------------------------------------------
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---
>reverse_1724
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-------------------------------------------TTTTTGCCCGCCACCTGTAT-----------------
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---
>forward_1059
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-------------------------------------------------------------------------------T
ATGTACATGCATGCCCGGT-------------------------------------------------------------
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---
>reverse_3278
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-----------------------------------------------------------------------------ATG
GATATGCCGGCGATGTC---------------------------------------------------------------
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---
