Multiple sequence alignment - TraesCS3B01G260100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G260100 chr3B 100.000 2501 0 0 1 2501 417958877 417956377 0.000000e+00 4619.0
1 TraesCS3B01G260100 chr3A 94.331 1376 45 13 417 1759 431072662 431071287 0.000000e+00 2078.0
2 TraesCS3B01G260100 chr3A 95.283 318 15 0 1 318 431074109 431073792 2.870000e-139 505.0
3 TraesCS3B01G260100 chr3A 88.095 168 14 2 4 171 668638388 668638227 7.060000e-46 195.0
4 TraesCS3B01G260100 chr3A 85.380 171 19 2 1 171 718741941 718742105 3.310000e-39 172.0
5 TraesCS3B01G260100 chr3D 94.087 1336 46 11 456 1759 303465132 303466466 0.000000e+00 1999.0
6 TraesCS3B01G260100 chr3D 92.874 435 20 6 1 432 303463589 303464015 2.730000e-174 621.0
7 TraesCS3B01G260100 chr3D 98.333 60 1 0 427 486 303465071 303465130 3.400000e-19 106.0
8 TraesCS3B01G260100 chr4D 81.529 471 50 19 2041 2501 66651453 66651896 1.100000e-93 353.0
9 TraesCS3B01G260100 chr4D 86.408 206 21 3 1760 1959 65099657 65099861 4.190000e-53 219.0
10 TraesCS3B01G260100 chr5D 84.530 362 41 5 2043 2394 422336311 422335955 6.620000e-91 344.0
11 TraesCS3B01G260100 chr5D 81.395 215 31 8 2161 2369 485202932 485203143 1.540000e-37 167.0
12 TraesCS3B01G260100 chr5D 75.000 268 65 2 615 881 510059061 510058795 3.380000e-24 122.0
13 TraesCS3B01G260100 chr5D 87.640 89 11 0 2393 2481 514144192 514144104 1.220000e-18 104.0
14 TraesCS3B01G260100 chr2D 88.517 209 16 5 1760 1961 629389417 629389210 1.920000e-61 246.0
15 TraesCS3B01G260100 chr2D 80.519 308 41 15 2043 2340 108913220 108912922 4.190000e-53 219.0
16 TraesCS3B01G260100 chr2D 74.916 299 71 4 577 873 196130548 196130844 1.560000e-27 134.0
17 TraesCS3B01G260100 chr2D 80.916 131 25 0 661 791 196224176 196224306 1.220000e-18 104.0
18 TraesCS3B01G260100 chr6D 88.152 211 15 4 1756 1959 456277693 456277486 2.490000e-60 243.0
19 TraesCS3B01G260100 chr6D 81.124 249 30 14 2049 2291 263236197 263235960 1.530000e-42 183.0
20 TraesCS3B01G260100 chr1B 79.348 368 49 16 2041 2394 361170501 361170855 1.500000e-57 233.0
21 TraesCS3B01G260100 chr1B 87.745 204 20 4 1760 1959 597105801 597105599 1.500000e-57 233.0
22 TraesCS3B01G260100 chr1A 86.634 202 21 6 1760 1959 13851444 13851247 4.190000e-53 219.0
23 TraesCS3B01G260100 chr1A 85.514 214 22 5 1760 1966 551528460 551528249 5.420000e-52 215.0
24 TraesCS3B01G260100 chr1A 85.294 204 22 5 1762 1959 463351961 463352162 1.170000e-48 204.0
25 TraesCS3B01G260100 chr1A 85.119 168 19 2 4 171 343963539 343963378 1.540000e-37 167.0
26 TraesCS3B01G260100 chr1A 80.909 220 27 12 2041 2257 9656325 9656118 2.570000e-35 159.0
27 TraesCS3B01G260100 chr7B 84.762 210 24 4 1757 1959 731102962 731103170 1.170000e-48 204.0
28 TraesCS3B01G260100 chr7B 80.734 218 29 11 2071 2285 25677311 25677518 9.260000e-35 158.0
29 TraesCS3B01G260100 chr7D 84.977 213 15 9 1761 1961 161536602 161536809 1.520000e-47 200.0
30 TraesCS3B01G260100 chr7D 82.833 233 26 12 2066 2294 482242545 482242323 1.960000e-46 196.0
31 TraesCS3B01G260100 chr4B 79.853 273 35 13 2029 2295 142039116 142039374 5.500000e-42 182.0
32 TraesCS3B01G260100 chr2A 85.714 168 18 2 4 171 469876551 469876390 3.310000e-39 172.0
33 TraesCS3B01G260100 chr2A 77.912 249 51 4 577 823 211694713 211694959 4.310000e-33 152.0
34 TraesCS3B01G260100 chr5B 80.503 159 29 2 615 772 641043456 641043299 1.220000e-23 121.0
35 TraesCS3B01G260100 chr2B 81.679 131 24 0 661 791 252976892 252977022 2.630000e-20 110.0
36 TraesCS3B01G260100 chrUn 93.478 46 2 1 716 761 99864155 99864111 1.610000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G260100 chr3B 417956377 417958877 2500 True 4619.000000 4619 100.000 1 2501 1 chr3B.!!$R1 2500
1 TraesCS3B01G260100 chr3A 431071287 431074109 2822 True 1291.500000 2078 94.807 1 1759 2 chr3A.!!$R2 1758
2 TraesCS3B01G260100 chr3D 303463589 303466466 2877 False 908.666667 1999 95.098 1 1759 3 chr3D.!!$F1 1758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 1.153353 GGCAACGCACAGCTTAGTTA 58.847 50.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 4193 0.029167 GACGCTCTAACCTAGTCGCC 59.971 60.0 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 1.153353 GGCAACGCACAGCTTAGTTA 58.847 50.000 0.00 0.00 0.00 2.24
128 129 1.533731 GGCAACGCACAGCTTAGTTAA 59.466 47.619 0.00 0.00 0.00 2.01
233 234 2.988343 CGACTATAGAGTTGTCGCCTG 58.012 52.381 6.78 0.00 45.88 4.85
334 335 1.819288 CGATACACAGTCACCCAGAGT 59.181 52.381 0.00 0.00 0.00 3.24
352 1050 6.593382 CCCAGAGTTTTGTTTGATTGTTTCAA 59.407 34.615 0.00 0.00 42.62 2.69
355 1053 8.658609 CAGAGTTTTGTTTGATTGTTTCAATGT 58.341 29.630 0.00 0.00 43.73 2.71
356 1054 8.872845 AGAGTTTTGTTTGATTGTTTCAATGTC 58.127 29.630 0.00 0.00 43.73 3.06
369 1067 5.242171 TGTTTCAATGTCGGAGTACAGAGTA 59.758 40.000 0.00 0.00 31.70 2.59
370 1068 5.562506 TTCAATGTCGGAGTACAGAGTAG 57.437 43.478 0.00 0.00 31.70 2.57
372 1070 5.737860 TCAATGTCGGAGTACAGAGTAGTA 58.262 41.667 0.00 0.00 31.70 1.82
392 1090 5.191426 AGTACTACTACTGGCAAGAATCGA 58.809 41.667 0.00 0.00 31.46 3.59
552 2685 3.453679 GAGCTTCCCGTCGCCTCT 61.454 66.667 0.00 0.00 0.00 3.69
659 2792 2.668550 GGTGTTGGACCTGACGCC 60.669 66.667 13.16 13.16 42.25 5.68
1014 3147 2.165380 CACCATGTCCTTGTGCTCG 58.835 57.895 0.00 0.00 0.00 5.03
1113 3246 2.775032 TTAGGCGCCACGTGACCTTC 62.775 60.000 31.54 8.42 33.60 3.46
1258 3391 1.962306 GAAACGTACGCCTTGGCCA 60.962 57.895 16.72 0.00 0.00 5.36
1283 3416 1.069668 GAAGACACGGTTGTACAGGGT 59.930 52.381 0.00 0.00 35.47 4.34
1455 3588 0.038526 CGCTCTTGTACCGTTCCAGT 60.039 55.000 0.00 0.00 0.00 4.00
1487 3620 1.231068 GGGATGTCATGGCCATGGT 59.769 57.895 38.81 26.90 39.24 3.55
1499 3632 1.746615 CCATGGTCGGCTCCAACTG 60.747 63.158 2.57 0.00 41.09 3.16
1562 3695 2.435372 TCAGGTGCTTGAGTTGGTTT 57.565 45.000 0.00 0.00 0.00 3.27
1563 3696 2.297701 TCAGGTGCTTGAGTTGGTTTC 58.702 47.619 0.00 0.00 0.00 2.78
1564 3697 2.092429 TCAGGTGCTTGAGTTGGTTTCT 60.092 45.455 0.00 0.00 0.00 2.52
1565 3698 3.135712 TCAGGTGCTTGAGTTGGTTTCTA 59.864 43.478 0.00 0.00 0.00 2.10
1566 3699 4.074970 CAGGTGCTTGAGTTGGTTTCTAT 58.925 43.478 0.00 0.00 0.00 1.98
1568 3701 3.191371 GGTGCTTGAGTTGGTTTCTATGG 59.809 47.826 0.00 0.00 0.00 2.74
1569 3702 4.072131 GTGCTTGAGTTGGTTTCTATGGA 58.928 43.478 0.00 0.00 0.00 3.41
1570 3703 4.154918 GTGCTTGAGTTGGTTTCTATGGAG 59.845 45.833 0.00 0.00 0.00 3.86
1571 3704 3.691609 GCTTGAGTTGGTTTCTATGGAGG 59.308 47.826 0.00 0.00 0.00 4.30
1573 3706 4.826274 TGAGTTGGTTTCTATGGAGGAG 57.174 45.455 0.00 0.00 0.00 3.69
1575 3708 4.223032 TGAGTTGGTTTCTATGGAGGAGTC 59.777 45.833 0.00 0.00 0.00 3.36
1576 3709 3.195825 AGTTGGTTTCTATGGAGGAGTCG 59.804 47.826 0.00 0.00 0.00 4.18
1577 3710 2.816411 TGGTTTCTATGGAGGAGTCGT 58.184 47.619 0.00 0.00 0.00 4.34
1584 3742 4.817517 TCTATGGAGGAGTCGTGAAAAAC 58.182 43.478 0.00 0.00 0.00 2.43
1598 3756 0.101579 AAAAACGCAAGGTCGGTTGG 59.898 50.000 0.00 0.00 38.58 3.77
1632 3794 2.938451 TGATTGACCATTCGCTGTGATC 59.062 45.455 0.00 0.00 0.00 2.92
1701 3863 1.605453 GGATGCGACCCCTTAACCA 59.395 57.895 0.00 0.00 0.00 3.67
1702 3864 0.463833 GGATGCGACCCCTTAACCAG 60.464 60.000 0.00 0.00 0.00 4.00
1759 3922 2.637025 CCACGGCGTCAAAAGTGG 59.363 61.111 10.85 2.06 46.52 4.00
1760 3923 2.637025 CACGGCGTCAAAAGTGGG 59.363 61.111 10.85 0.00 0.00 4.61
1761 3924 1.890041 CACGGCGTCAAAAGTGGGA 60.890 57.895 10.85 0.00 0.00 4.37
1762 3925 1.072505 ACGGCGTCAAAAGTGGGAT 59.927 52.632 6.77 0.00 0.00 3.85
1763 3926 0.953960 ACGGCGTCAAAAGTGGGATC 60.954 55.000 6.77 0.00 0.00 3.36
1764 3927 1.644786 CGGCGTCAAAAGTGGGATCC 61.645 60.000 1.92 1.92 0.00 3.36
1765 3928 1.644786 GGCGTCAAAAGTGGGATCCG 61.645 60.000 5.45 0.00 0.00 4.18
1766 3929 1.644786 GCGTCAAAAGTGGGATCCGG 61.645 60.000 5.45 0.00 0.00 5.14
1767 3930 1.644786 CGTCAAAAGTGGGATCCGGC 61.645 60.000 5.45 0.42 0.00 6.13
1768 3931 0.322546 GTCAAAAGTGGGATCCGGCT 60.323 55.000 5.45 3.09 0.00 5.52
1769 3932 0.404040 TCAAAAGTGGGATCCGGCTT 59.596 50.000 5.45 9.51 0.00 4.35
1770 3933 0.527565 CAAAAGTGGGATCCGGCTTG 59.472 55.000 16.88 7.86 0.00 4.01
1771 3934 1.250840 AAAAGTGGGATCCGGCTTGC 61.251 55.000 16.88 0.00 0.00 4.01
1772 3935 3.645268 AAGTGGGATCCGGCTTGCC 62.645 63.158 15.83 1.50 0.00 4.52
1773 3936 4.115199 GTGGGATCCGGCTTGCCT 62.115 66.667 14.28 0.00 0.00 4.75
1774 3937 4.113815 TGGGATCCGGCTTGCCTG 62.114 66.667 14.28 3.29 0.00 4.85
1776 3939 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
1777 3940 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
1778 3941 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
1782 3945 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
1783 3946 3.726144 GCTTGCCTGCTCCCTCCT 61.726 66.667 0.00 0.00 0.00 3.69
1784 3947 2.588989 CTTGCCTGCTCCCTCCTC 59.411 66.667 0.00 0.00 0.00 3.71
1785 3948 2.203983 TTGCCTGCTCCCTCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
1786 3949 1.617536 TTGCCTGCTCCCTCCTCAT 60.618 57.895 0.00 0.00 0.00 2.90
1787 3950 1.918467 TTGCCTGCTCCCTCCTCATG 61.918 60.000 0.00 0.00 0.00 3.07
1788 3951 2.509916 CCTGCTCCCTCCTCATGC 59.490 66.667 0.00 0.00 0.00 4.06
1789 3952 2.071262 CCTGCTCCCTCCTCATGCT 61.071 63.158 0.00 0.00 0.00 3.79
1790 3953 1.633915 CCTGCTCCCTCCTCATGCTT 61.634 60.000 0.00 0.00 0.00 3.91
1791 3954 0.255318 CTGCTCCCTCCTCATGCTTT 59.745 55.000 0.00 0.00 0.00 3.51
1792 3955 0.254178 TGCTCCCTCCTCATGCTTTC 59.746 55.000 0.00 0.00 0.00 2.62
1793 3956 0.254178 GCTCCCTCCTCATGCTTTCA 59.746 55.000 0.00 0.00 0.00 2.69
1794 3957 1.133853 GCTCCCTCCTCATGCTTTCAT 60.134 52.381 0.00 0.00 0.00 2.57
1795 3958 2.686118 GCTCCCTCCTCATGCTTTCATT 60.686 50.000 0.00 0.00 0.00 2.57
1796 3959 3.212685 CTCCCTCCTCATGCTTTCATTC 58.787 50.000 0.00 0.00 0.00 2.67
1797 3960 1.945394 CCCTCCTCATGCTTTCATTCG 59.055 52.381 0.00 0.00 0.00 3.34
1798 3961 2.636830 CCTCCTCATGCTTTCATTCGT 58.363 47.619 0.00 0.00 0.00 3.85
1799 3962 2.353889 CCTCCTCATGCTTTCATTCGTG 59.646 50.000 0.00 0.00 0.00 4.35
1800 3963 3.005554 CTCCTCATGCTTTCATTCGTGT 58.994 45.455 0.00 0.00 0.00 4.49
1801 3964 3.411446 TCCTCATGCTTTCATTCGTGTT 58.589 40.909 0.00 0.00 0.00 3.32
1802 3965 3.436704 TCCTCATGCTTTCATTCGTGTTC 59.563 43.478 0.00 0.00 0.00 3.18
1803 3966 3.426695 CCTCATGCTTTCATTCGTGTTCC 60.427 47.826 0.00 0.00 0.00 3.62
1804 3967 2.487762 TCATGCTTTCATTCGTGTTCCC 59.512 45.455 0.00 0.00 0.00 3.97
1805 3968 1.974265 TGCTTTCATTCGTGTTCCCA 58.026 45.000 0.00 0.00 0.00 4.37
1806 3969 1.606668 TGCTTTCATTCGTGTTCCCAC 59.393 47.619 0.00 0.00 38.27 4.61
1807 3970 1.880027 GCTTTCATTCGTGTTCCCACT 59.120 47.619 0.00 0.00 39.55 4.00
1808 3971 2.293399 GCTTTCATTCGTGTTCCCACTT 59.707 45.455 0.00 0.00 39.55 3.16
1809 3972 3.609409 GCTTTCATTCGTGTTCCCACTTC 60.609 47.826 0.00 0.00 39.55 3.01
1810 3973 2.920724 TCATTCGTGTTCCCACTTCA 57.079 45.000 0.00 0.00 39.55 3.02
1811 3974 3.417069 TCATTCGTGTTCCCACTTCAT 57.583 42.857 0.00 0.00 39.55 2.57
1812 3975 3.750371 TCATTCGTGTTCCCACTTCATT 58.250 40.909 0.00 0.00 39.55 2.57
1813 3976 3.751175 TCATTCGTGTTCCCACTTCATTC 59.249 43.478 0.00 0.00 39.55 2.67
1814 3977 3.485463 TTCGTGTTCCCACTTCATTCT 57.515 42.857 0.00 0.00 39.55 2.40
1815 3978 4.610605 TTCGTGTTCCCACTTCATTCTA 57.389 40.909 0.00 0.00 39.55 2.10
1816 3979 3.921677 TCGTGTTCCCACTTCATTCTAC 58.078 45.455 0.00 0.00 39.55 2.59
1817 3980 2.666508 CGTGTTCCCACTTCATTCTACG 59.333 50.000 0.00 0.00 39.55 3.51
1818 3981 3.000727 GTGTTCCCACTTCATTCTACGG 58.999 50.000 0.00 0.00 38.61 4.02
1819 3982 2.007608 GTTCCCACTTCATTCTACGGC 58.992 52.381 0.00 0.00 0.00 5.68
1820 3983 1.568504 TCCCACTTCATTCTACGGCT 58.431 50.000 0.00 0.00 0.00 5.52
1821 3984 1.207089 TCCCACTTCATTCTACGGCTG 59.793 52.381 0.00 0.00 0.00 4.85
1822 3985 1.066143 CCCACTTCATTCTACGGCTGT 60.066 52.381 2.42 2.42 0.00 4.40
1823 3986 2.271800 CCACTTCATTCTACGGCTGTC 58.728 52.381 0.00 0.00 0.00 3.51
1824 3987 2.093973 CCACTTCATTCTACGGCTGTCT 60.094 50.000 0.00 0.00 0.00 3.41
1825 3988 3.589988 CACTTCATTCTACGGCTGTCTT 58.410 45.455 0.00 0.00 0.00 3.01
1826 3989 3.997021 CACTTCATTCTACGGCTGTCTTT 59.003 43.478 0.00 0.00 0.00 2.52
1827 3990 4.452455 CACTTCATTCTACGGCTGTCTTTT 59.548 41.667 0.00 0.00 0.00 2.27
1828 3991 5.049405 CACTTCATTCTACGGCTGTCTTTTT 60.049 40.000 0.00 0.00 0.00 1.94
1868 4031 3.688049 CCCCCATGATTTTAAGAGGGT 57.312 47.619 0.00 0.00 34.44 4.34
1869 4032 3.299503 CCCCCATGATTTTAAGAGGGTG 58.700 50.000 0.00 0.00 34.44 4.61
1870 4033 3.052944 CCCCCATGATTTTAAGAGGGTGA 60.053 47.826 0.00 0.00 34.44 4.02
1871 4034 4.210331 CCCCATGATTTTAAGAGGGTGAG 58.790 47.826 0.00 0.00 34.44 3.51
1872 4035 4.079787 CCCCATGATTTTAAGAGGGTGAGA 60.080 45.833 0.00 0.00 34.44 3.27
1873 4036 4.884164 CCCATGATTTTAAGAGGGTGAGAC 59.116 45.833 0.00 0.00 0.00 3.36
1874 4037 4.572389 CCATGATTTTAAGAGGGTGAGACG 59.428 45.833 0.00 0.00 0.00 4.18
1875 4038 4.202245 TGATTTTAAGAGGGTGAGACGG 57.798 45.455 0.00 0.00 0.00 4.79
1876 4039 3.581332 TGATTTTAAGAGGGTGAGACGGT 59.419 43.478 0.00 0.00 0.00 4.83
1877 4040 4.041198 TGATTTTAAGAGGGTGAGACGGTT 59.959 41.667 0.00 0.00 0.00 4.44
1878 4041 3.672767 TTTAAGAGGGTGAGACGGTTC 57.327 47.619 0.00 0.00 0.00 3.62
1879 4042 2.599408 TAAGAGGGTGAGACGGTTCT 57.401 50.000 0.00 0.00 33.37 3.01
1880 4043 1.718280 AAGAGGGTGAGACGGTTCTT 58.282 50.000 0.00 0.00 29.47 2.52
1881 4044 2.599408 AGAGGGTGAGACGGTTCTTA 57.401 50.000 0.00 0.00 29.47 2.10
1882 4045 3.103080 AGAGGGTGAGACGGTTCTTAT 57.897 47.619 0.00 0.00 29.47 1.73
1883 4046 3.442076 AGAGGGTGAGACGGTTCTTATT 58.558 45.455 0.00 0.00 29.47 1.40
1884 4047 3.838903 AGAGGGTGAGACGGTTCTTATTT 59.161 43.478 0.00 0.00 29.47 1.40
1885 4048 4.286291 AGAGGGTGAGACGGTTCTTATTTT 59.714 41.667 0.00 0.00 29.47 1.82
1886 4049 4.324267 AGGGTGAGACGGTTCTTATTTTG 58.676 43.478 0.00 0.00 29.47 2.44
1887 4050 4.070009 GGGTGAGACGGTTCTTATTTTGT 58.930 43.478 0.00 0.00 29.47 2.83
1888 4051 4.517832 GGGTGAGACGGTTCTTATTTTGTT 59.482 41.667 0.00 0.00 29.47 2.83
1889 4052 5.334646 GGGTGAGACGGTTCTTATTTTGTTC 60.335 44.000 0.00 0.00 29.47 3.18
1890 4053 5.334646 GGTGAGACGGTTCTTATTTTGTTCC 60.335 44.000 0.00 0.00 29.47 3.62
1891 4054 5.237779 GTGAGACGGTTCTTATTTTGTTCCA 59.762 40.000 0.00 0.00 29.47 3.53
1892 4055 5.823570 TGAGACGGTTCTTATTTTGTTCCAA 59.176 36.000 0.00 0.00 29.47 3.53
1893 4056 6.488683 TGAGACGGTTCTTATTTTGTTCCAAT 59.511 34.615 0.00 0.00 29.47 3.16
1894 4057 6.909909 AGACGGTTCTTATTTTGTTCCAATC 58.090 36.000 0.00 0.00 0.00 2.67
1895 4058 6.488683 AGACGGTTCTTATTTTGTTCCAATCA 59.511 34.615 0.00 0.00 0.00 2.57
1896 4059 7.013846 AGACGGTTCTTATTTTGTTCCAATCAA 59.986 33.333 0.00 0.00 0.00 2.57
1897 4060 7.493367 ACGGTTCTTATTTTGTTCCAATCAAA 58.507 30.769 0.00 0.00 33.76 2.69
1898 4061 8.147704 ACGGTTCTTATTTTGTTCCAATCAAAT 58.852 29.630 0.00 0.00 35.25 2.32
1899 4062 8.647226 CGGTTCTTATTTTGTTCCAATCAAATC 58.353 33.333 0.00 0.00 35.25 2.17
1900 4063 9.487790 GGTTCTTATTTTGTTCCAATCAAATCA 57.512 29.630 0.00 0.00 35.25 2.57
1903 4066 9.206870 TCTTATTTTGTTCCAATCAAATCAAGC 57.793 29.630 0.00 0.00 35.25 4.01
1904 4067 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
1905 4068 4.952071 TTGTTCCAATCAAATCAAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
1906 4069 4.255833 TGTTCCAATCAAATCAAGCCAC 57.744 40.909 0.00 0.00 0.00 5.01
1907 4070 3.244976 GTTCCAATCAAATCAAGCCACG 58.755 45.455 0.00 0.00 0.00 4.94
1908 4071 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
1909 4072 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
1910 4073 3.438781 TCCAATCAAATCAAGCCACGTAC 59.561 43.478 0.00 0.00 0.00 3.67
1911 4074 3.416277 CAATCAAATCAAGCCACGTACG 58.584 45.455 15.01 15.01 0.00 3.67
1912 4075 0.793861 TCAAATCAAGCCACGTACGC 59.206 50.000 16.72 0.00 0.00 4.42
1913 4076 0.518355 CAAATCAAGCCACGTACGCG 60.518 55.000 16.72 3.53 44.93 6.01
1914 4077 1.632046 AAATCAAGCCACGTACGCGG 61.632 55.000 17.94 17.94 43.45 6.46
1915 4078 4.728102 TCAAGCCACGTACGCGGG 62.728 66.667 22.89 20.94 43.45 6.13
1916 4079 4.728102 CAAGCCACGTACGCGGGA 62.728 66.667 25.61 0.00 45.97 5.14
1917 4080 4.430765 AAGCCACGTACGCGGGAG 62.431 66.667 25.61 2.82 45.97 4.30
1929 4092 3.770040 CGGGAGCACGGATGGACA 61.770 66.667 0.00 0.00 0.00 4.02
1930 4093 2.125106 GGGAGCACGGATGGACAC 60.125 66.667 0.00 0.00 0.00 3.67
1931 4094 2.662596 GGAGCACGGATGGACACA 59.337 61.111 0.00 0.00 0.00 3.72
1932 4095 1.741770 GGAGCACGGATGGACACAC 60.742 63.158 0.00 0.00 0.00 3.82
1933 4096 2.048222 AGCACGGATGGACACACG 60.048 61.111 0.00 0.00 0.00 4.49
1934 4097 3.788766 GCACGGATGGACACACGC 61.789 66.667 0.00 0.00 0.00 5.34
1935 4098 3.478394 CACGGATGGACACACGCG 61.478 66.667 3.53 3.53 0.00 6.01
1936 4099 4.735132 ACGGATGGACACACGCGG 62.735 66.667 12.47 1.27 0.00 6.46
1938 4101 4.077184 GGATGGACACACGCGGGA 62.077 66.667 19.19 0.00 0.00 5.14
1939 4102 2.509336 GATGGACACACGCGGGAG 60.509 66.667 19.19 10.92 0.00 4.30
1940 4103 4.082523 ATGGACACACGCGGGAGG 62.083 66.667 19.19 9.72 0.00 4.30
1942 4105 4.436998 GGACACACGCGGGAGGAG 62.437 72.222 19.19 4.06 0.00 3.69
1951 4114 3.710722 CGGGAGGAGCAGGCAAGT 61.711 66.667 0.00 0.00 0.00 3.16
1952 4115 2.270527 GGGAGGAGCAGGCAAGTC 59.729 66.667 0.00 0.00 0.00 3.01
1953 4116 2.297129 GGGAGGAGCAGGCAAGTCT 61.297 63.158 0.00 0.00 0.00 3.24
1954 4117 1.220477 GGAGGAGCAGGCAAGTCTC 59.780 63.158 0.00 0.00 0.00 3.36
1955 4118 1.153667 GAGGAGCAGGCAAGTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
1956 4119 1.882989 GAGGAGCAGGCAAGTCTCGT 61.883 60.000 0.00 0.00 0.00 4.18
1957 4120 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
1958 4121 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
1959 4122 2.159819 GAGCAGGCAAGTCTCGTCCA 62.160 60.000 0.00 0.00 0.00 4.02
1960 4123 1.078848 GCAGGCAAGTCTCGTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
1961 4124 1.086634 GCAGGCAAGTCTCGTCCATC 61.087 60.000 0.00 0.00 0.00 3.51
1962 4125 0.247460 CAGGCAAGTCTCGTCCATCA 59.753 55.000 0.00 0.00 0.00 3.07
1963 4126 0.976641 AGGCAAGTCTCGTCCATCAA 59.023 50.000 0.00 0.00 0.00 2.57
1964 4127 1.066573 AGGCAAGTCTCGTCCATCAAG 60.067 52.381 0.00 0.00 0.00 3.02
1965 4128 1.363744 GCAAGTCTCGTCCATCAAGG 58.636 55.000 0.00 0.00 39.47 3.61
1966 4129 1.363744 CAAGTCTCGTCCATCAAGGC 58.636 55.000 0.00 0.00 37.29 4.35
1967 4130 1.066573 CAAGTCTCGTCCATCAAGGCT 60.067 52.381 0.00 0.00 37.29 4.58
1968 4131 1.270907 AGTCTCGTCCATCAAGGCTT 58.729 50.000 0.00 0.00 37.29 4.35
1969 4132 1.625818 AGTCTCGTCCATCAAGGCTTT 59.374 47.619 0.00 0.00 37.29 3.51
1970 4133 1.734465 GTCTCGTCCATCAAGGCTTTG 59.266 52.381 1.35 1.35 37.29 2.77
1971 4134 1.347707 TCTCGTCCATCAAGGCTTTGT 59.652 47.619 8.56 0.00 37.29 2.83
1972 4135 2.154462 CTCGTCCATCAAGGCTTTGTT 58.846 47.619 8.56 0.00 37.29 2.83
1973 4136 1.879380 TCGTCCATCAAGGCTTTGTTG 59.121 47.619 8.56 10.26 37.29 3.33
1975 4138 1.273327 GTCCATCAAGGCTTTGTTGGG 59.727 52.381 28.54 18.91 46.91 4.12
1976 4139 0.037046 CCATCAAGGCTTTGTTGGGC 60.037 55.000 24.16 0.00 44.82 5.36
1977 4140 3.379608 CCATCAAGGCTTTGTTGGGCC 62.380 57.143 24.16 0.00 44.82 5.80
1981 4144 2.841988 GGCTTTGTTGGGCCACCA 60.842 61.111 5.23 0.85 46.84 4.17
1989 4152 2.525075 TGGGCCACCAATTGAGCA 59.475 55.556 0.00 0.00 45.87 4.26
1990 4153 1.907807 TGGGCCACCAATTGAGCAC 60.908 57.895 0.00 8.62 45.87 4.40
1991 4154 2.568090 GGCCACCAATTGAGCACG 59.432 61.111 7.12 0.00 0.00 5.34
1992 4155 2.126346 GCCACCAATTGAGCACGC 60.126 61.111 7.12 0.00 0.00 5.34
1993 4156 2.568090 CCACCAATTGAGCACGCC 59.432 61.111 7.12 0.00 0.00 5.68
1994 4157 2.568090 CACCAATTGAGCACGCCC 59.432 61.111 7.12 0.00 0.00 6.13
1995 4158 1.973281 CACCAATTGAGCACGCCCT 60.973 57.895 7.12 0.00 0.00 5.19
1996 4159 1.675641 ACCAATTGAGCACGCCCTC 60.676 57.895 7.12 0.00 0.00 4.30
1997 4160 2.753966 CCAATTGAGCACGCCCTCG 61.754 63.158 7.12 0.00 42.43 4.63
2025 4188 3.878086 TTTTTCATGCACAGACGACTC 57.122 42.857 0.00 0.00 0.00 3.36
2026 4189 1.795768 TTTCATGCACAGACGACTCC 58.204 50.000 0.00 0.00 0.00 3.85
2027 4190 0.037326 TTCATGCACAGACGACTCCC 60.037 55.000 0.00 0.00 0.00 4.30
2028 4191 1.184970 TCATGCACAGACGACTCCCA 61.185 55.000 0.00 0.00 0.00 4.37
2029 4192 0.320683 CATGCACAGACGACTCCCAA 60.321 55.000 0.00 0.00 0.00 4.12
2030 4193 0.036952 ATGCACAGACGACTCCCAAG 60.037 55.000 0.00 0.00 0.00 3.61
2031 4194 1.374758 GCACAGACGACTCCCAAGG 60.375 63.158 0.00 0.00 0.00 3.61
2032 4195 1.374758 CACAGACGACTCCCAAGGC 60.375 63.158 0.00 0.00 0.00 4.35
2039 4202 1.817209 GACTCCCAAGGCGACTAGG 59.183 63.158 0.00 0.00 42.68 3.02
2040 4203 0.971447 GACTCCCAAGGCGACTAGGT 60.971 60.000 7.13 0.00 42.68 3.08
2041 4204 0.544595 ACTCCCAAGGCGACTAGGTT 60.545 55.000 7.13 0.00 42.68 3.50
2042 4205 1.272872 ACTCCCAAGGCGACTAGGTTA 60.273 52.381 7.13 0.00 42.68 2.85
2043 4206 1.409427 CTCCCAAGGCGACTAGGTTAG 59.591 57.143 7.13 0.00 42.68 2.34
2044 4207 1.006281 TCCCAAGGCGACTAGGTTAGA 59.994 52.381 7.13 0.00 42.68 2.10
2045 4208 1.409427 CCCAAGGCGACTAGGTTAGAG 59.591 57.143 0.00 0.00 42.68 2.43
2046 4209 1.202428 CCAAGGCGACTAGGTTAGAGC 60.202 57.143 0.00 0.00 42.68 4.09
2047 4210 0.739561 AAGGCGACTAGGTTAGAGCG 59.260 55.000 0.00 0.00 42.68 5.03
2048 4211 0.394080 AGGCGACTAGGTTAGAGCGT 60.394 55.000 0.00 0.00 40.61 5.07
2049 4212 0.029167 GGCGACTAGGTTAGAGCGTC 59.971 60.000 0.00 0.00 35.21 5.19
2050 4213 1.015868 GCGACTAGGTTAGAGCGTCT 58.984 55.000 0.00 0.00 32.70 4.18
2051 4214 1.003652 GCGACTAGGTTAGAGCGTCTC 60.004 57.143 0.00 0.00 32.70 3.36
2052 4215 1.598601 CGACTAGGTTAGAGCGTCTCC 59.401 57.143 0.00 0.00 0.00 3.71
2053 4216 2.641305 GACTAGGTTAGAGCGTCTCCA 58.359 52.381 0.00 0.00 0.00 3.86
2054 4217 2.614983 GACTAGGTTAGAGCGTCTCCAG 59.385 54.545 0.00 0.00 0.00 3.86
2055 4218 1.335496 CTAGGTTAGAGCGTCTCCAGC 59.665 57.143 3.66 1.91 0.00 4.85
2056 4219 1.142097 GGTTAGAGCGTCTCCAGCC 59.858 63.158 3.66 0.00 34.64 4.85
2057 4220 1.226717 GTTAGAGCGTCTCCAGCCG 60.227 63.158 3.66 0.00 34.64 5.52
2058 4221 1.677966 TTAGAGCGTCTCCAGCCGT 60.678 57.895 3.66 0.00 34.64 5.68
2059 4222 1.248785 TTAGAGCGTCTCCAGCCGTT 61.249 55.000 3.66 0.00 34.64 4.44
2060 4223 1.654954 TAGAGCGTCTCCAGCCGTTC 61.655 60.000 3.66 0.00 34.98 3.95
2061 4224 4.421479 AGCGTCTCCAGCCGTTCG 62.421 66.667 0.00 0.00 34.64 3.95
2064 4227 4.070552 GTCTCCAGCCGTTCGCCT 62.071 66.667 0.00 0.00 38.78 5.52
2065 4228 3.760035 TCTCCAGCCGTTCGCCTC 61.760 66.667 0.00 0.00 38.78 4.70
2066 4229 4.821589 CTCCAGCCGTTCGCCTCC 62.822 72.222 0.00 0.00 38.78 4.30
2069 4232 3.458163 CAGCCGTTCGCCTCCCTA 61.458 66.667 0.00 0.00 38.78 3.53
2070 4233 3.148279 AGCCGTTCGCCTCCCTAG 61.148 66.667 0.00 0.00 38.78 3.02
2071 4234 4.222847 GCCGTTCGCCTCCCTAGG 62.223 72.222 0.06 0.06 46.76 3.02
2072 4235 3.537874 CCGTTCGCCTCCCTAGGG 61.538 72.222 23.22 23.22 43.87 3.53
2073 4236 4.222847 CGTTCGCCTCCCTAGGGC 62.223 72.222 24.42 10.79 43.87 5.19
2074 4237 2.764547 GTTCGCCTCCCTAGGGCT 60.765 66.667 24.42 0.00 46.73 5.19
2075 4238 2.040606 TTCGCCTCCCTAGGGCTT 59.959 61.111 24.42 0.00 46.73 4.35
2076 4239 2.367202 TTCGCCTCCCTAGGGCTTG 61.367 63.158 24.42 14.26 46.73 4.01
2077 4240 2.764128 CGCCTCCCTAGGGCTTGA 60.764 66.667 24.42 4.66 46.73 3.02
2078 4241 2.367202 CGCCTCCCTAGGGCTTGAA 61.367 63.158 24.42 4.23 46.73 2.69
2079 4242 1.910580 CGCCTCCCTAGGGCTTGAAA 61.911 60.000 24.42 3.40 46.73 2.69
2080 4243 0.553333 GCCTCCCTAGGGCTTGAAAT 59.447 55.000 24.42 0.00 45.57 2.17
2081 4244 1.774856 GCCTCCCTAGGGCTTGAAATA 59.225 52.381 24.42 1.74 45.57 1.40
2082 4245 2.224646 GCCTCCCTAGGGCTTGAAATAG 60.225 54.545 24.42 12.24 45.57 1.73
2083 4246 3.318313 CCTCCCTAGGGCTTGAAATAGA 58.682 50.000 24.42 0.11 39.48 1.98
2084 4247 3.326297 CCTCCCTAGGGCTTGAAATAGAG 59.674 52.174 24.42 10.74 39.48 2.43
2085 4248 2.706190 TCCCTAGGGCTTGAAATAGAGC 59.294 50.000 24.42 0.00 38.17 4.09
2090 4253 3.086733 GCTTGAAATAGAGCCGCCT 57.913 52.632 0.00 0.00 32.80 5.52
2091 4254 0.659957 GCTTGAAATAGAGCCGCCTG 59.340 55.000 0.00 0.00 32.80 4.85
2092 4255 1.303309 CTTGAAATAGAGCCGCCTGG 58.697 55.000 0.00 0.00 38.77 4.45
2093 4256 0.107214 TTGAAATAGAGCCGCCTGGG 60.107 55.000 0.00 0.00 39.58 4.45
2094 4257 1.227973 GAAATAGAGCCGCCTGGGG 60.228 63.158 3.33 3.33 35.78 4.96
2095 4258 2.682582 GAAATAGAGCCGCCTGGGGG 62.683 65.000 24.52 24.52 38.76 5.40
2114 4277 2.125106 GCTCCCTGTCGGCGAAAT 60.125 61.111 12.92 0.00 0.00 2.17
2115 4278 1.745489 GCTCCCTGTCGGCGAAATT 60.745 57.895 12.92 0.00 0.00 1.82
2116 4279 0.461339 GCTCCCTGTCGGCGAAATTA 60.461 55.000 12.92 0.00 0.00 1.40
2117 4280 1.810412 GCTCCCTGTCGGCGAAATTAT 60.810 52.381 12.92 0.00 0.00 1.28
2118 4281 2.135933 CTCCCTGTCGGCGAAATTATC 58.864 52.381 12.92 0.00 0.00 1.75
2136 4299 4.875713 GGCATGGGGCGATCGGTT 62.876 66.667 18.30 0.00 46.16 4.44
2137 4300 2.828549 GCATGGGGCGATCGGTTT 60.829 61.111 18.30 0.00 0.00 3.27
2138 4301 2.834618 GCATGGGGCGATCGGTTTC 61.835 63.158 18.30 0.00 0.00 2.78
2139 4302 2.186826 CATGGGGCGATCGGTTTCC 61.187 63.158 18.30 9.14 0.00 3.13
2140 4303 3.415650 ATGGGGCGATCGGTTTCCC 62.416 63.158 18.30 17.83 38.03 3.97
2141 4304 4.104183 GGGGCGATCGGTTTCCCA 62.104 66.667 24.31 0.00 40.53 4.37
2142 4305 2.045731 GGGCGATCGGTTTCCCAA 60.046 61.111 19.95 0.00 38.62 4.12
2143 4306 2.404186 GGGCGATCGGTTTCCCAAC 61.404 63.158 19.95 0.00 38.62 3.77
2165 4328 4.748144 GCCCCAAGCTCACCCCAG 62.748 72.222 0.00 0.00 38.99 4.45
2166 4329 4.748144 CCCCAAGCTCACCCCAGC 62.748 72.222 0.00 0.00 39.99 4.85
2167 4330 4.748144 CCCAAGCTCACCCCAGCC 62.748 72.222 0.00 0.00 40.65 4.85
2169 4332 4.020617 CAAGCTCACCCCAGCCGA 62.021 66.667 0.00 0.00 40.65 5.54
2170 4333 4.021925 AAGCTCACCCCAGCCGAC 62.022 66.667 0.00 0.00 40.65 4.79
2173 4336 4.003788 CTCACCCCAGCCGACGTT 62.004 66.667 0.00 0.00 0.00 3.99
2174 4337 3.530910 CTCACCCCAGCCGACGTTT 62.531 63.158 0.00 0.00 0.00 3.60
2175 4338 2.593436 CACCCCAGCCGACGTTTT 60.593 61.111 0.00 0.00 0.00 2.43
2176 4339 2.190841 CACCCCAGCCGACGTTTTT 61.191 57.895 0.00 0.00 0.00 1.94
2202 4365 8.276060 TGAAAAATAAACTCGGTCAAAATTCG 57.724 30.769 0.00 0.00 0.00 3.34
2203 4366 7.380065 TGAAAAATAAACTCGGTCAAAATTCGG 59.620 33.333 0.00 0.00 0.00 4.30
2204 4367 2.699251 AAACTCGGTCAAAATTCGGC 57.301 45.000 0.00 0.00 0.00 5.54
2205 4368 0.879090 AACTCGGTCAAAATTCGGCC 59.121 50.000 0.00 0.00 0.00 6.13
2206 4369 0.250553 ACTCGGTCAAAATTCGGCCA 60.251 50.000 2.24 0.00 0.00 5.36
2207 4370 0.878416 CTCGGTCAAAATTCGGCCAA 59.122 50.000 2.24 0.00 0.00 4.52
2208 4371 1.268352 CTCGGTCAAAATTCGGCCAAA 59.732 47.619 2.24 0.00 0.00 3.28
2209 4372 1.001158 TCGGTCAAAATTCGGCCAAAC 60.001 47.619 2.24 0.00 0.00 2.93
2210 4373 1.269309 CGGTCAAAATTCGGCCAAACA 60.269 47.619 2.24 0.00 0.00 2.83
2211 4374 2.131972 GGTCAAAATTCGGCCAAACAC 58.868 47.619 2.24 0.00 0.00 3.32
2212 4375 1.784283 GTCAAAATTCGGCCAAACACG 59.216 47.619 2.24 0.00 0.00 4.49
2213 4376 1.676529 TCAAAATTCGGCCAAACACGA 59.323 42.857 2.24 0.00 37.33 4.35
2214 4377 1.784283 CAAAATTCGGCCAAACACGAC 59.216 47.619 2.24 0.00 39.04 4.34
2215 4378 1.025812 AAATTCGGCCAAACACGACA 58.974 45.000 2.24 0.00 39.04 4.35
2216 4379 0.309612 AATTCGGCCAAACACGACAC 59.690 50.000 2.24 0.00 39.04 3.67
2217 4380 0.816018 ATTCGGCCAAACACGACACA 60.816 50.000 2.24 0.00 39.04 3.72
2218 4381 0.816018 TTCGGCCAAACACGACACAT 60.816 50.000 2.24 0.00 39.04 3.21
2219 4382 0.033642 TCGGCCAAACACGACACATA 59.966 50.000 2.24 0.00 33.69 2.29
2220 4383 1.083489 CGGCCAAACACGACACATAT 58.917 50.000 2.24 0.00 0.00 1.78
2221 4384 1.466950 CGGCCAAACACGACACATATT 59.533 47.619 2.24 0.00 0.00 1.28
2222 4385 2.475519 CGGCCAAACACGACACATATTC 60.476 50.000 2.24 0.00 0.00 1.75
2223 4386 2.475519 GGCCAAACACGACACATATTCG 60.476 50.000 0.00 0.00 42.36 3.34
2224 4387 2.475519 GCCAAACACGACACATATTCGG 60.476 50.000 0.00 0.00 40.92 4.30
2225 4388 2.739913 CCAAACACGACACATATTCGGT 59.260 45.455 0.00 0.00 40.92 4.69
2226 4389 3.181524 CCAAACACGACACATATTCGGTC 60.182 47.826 0.00 0.00 40.92 4.79
2227 4390 3.306917 AACACGACACATATTCGGTCA 57.693 42.857 0.00 0.00 40.92 4.02
2228 4391 3.306917 ACACGACACATATTCGGTCAA 57.693 42.857 0.00 0.00 40.92 3.18
2229 4392 3.655486 ACACGACACATATTCGGTCAAA 58.345 40.909 0.00 0.00 40.92 2.69
2230 4393 3.430895 ACACGACACATATTCGGTCAAAC 59.569 43.478 0.00 0.00 40.92 2.93
2231 4394 3.678072 CACGACACATATTCGGTCAAACT 59.322 43.478 0.00 0.00 40.92 2.66
2232 4395 4.860352 CACGACACATATTCGGTCAAACTA 59.140 41.667 0.00 0.00 40.92 2.24
2233 4396 5.004440 CACGACACATATTCGGTCAAACTAG 59.996 44.000 0.00 0.00 40.92 2.57
2234 4397 4.503007 CGACACATATTCGGTCAAACTAGG 59.497 45.833 0.00 0.00 32.66 3.02
2235 4398 4.189231 ACACATATTCGGTCAAACTAGGC 58.811 43.478 0.00 0.00 0.00 3.93
2236 4399 3.245284 CACATATTCGGTCAAACTAGGCG 59.755 47.826 0.00 0.00 0.00 5.52
2237 4400 3.131577 ACATATTCGGTCAAACTAGGCGA 59.868 43.478 0.00 0.00 0.00 5.54
2238 4401 2.981859 ATTCGGTCAAACTAGGCGAT 57.018 45.000 0.00 0.00 0.00 4.58
2239 4402 2.754946 TTCGGTCAAACTAGGCGATT 57.245 45.000 0.00 0.00 0.00 3.34
2240 4403 2.754946 TCGGTCAAACTAGGCGATTT 57.245 45.000 0.00 0.00 0.00 2.17
2241 4404 2.613691 TCGGTCAAACTAGGCGATTTC 58.386 47.619 0.00 0.00 0.00 2.17
2242 4405 2.028839 TCGGTCAAACTAGGCGATTTCA 60.029 45.455 0.00 0.00 0.00 2.69
2243 4406 2.936498 CGGTCAAACTAGGCGATTTCAT 59.064 45.455 0.00 0.00 0.00 2.57
2244 4407 3.374058 CGGTCAAACTAGGCGATTTCATT 59.626 43.478 0.00 0.00 0.00 2.57
2245 4408 4.662145 GGTCAAACTAGGCGATTTCATTG 58.338 43.478 0.00 0.00 0.00 2.82
2246 4409 4.394920 GGTCAAACTAGGCGATTTCATTGA 59.605 41.667 0.00 0.00 0.00 2.57
2247 4410 5.066505 GGTCAAACTAGGCGATTTCATTGAT 59.933 40.000 0.00 0.00 0.00 2.57
2248 4411 6.260050 GGTCAAACTAGGCGATTTCATTGATA 59.740 38.462 0.00 0.00 0.00 2.15
2249 4412 7.041098 GGTCAAACTAGGCGATTTCATTGATAT 60.041 37.037 0.00 0.00 0.00 1.63
2250 4413 8.345565 GTCAAACTAGGCGATTTCATTGATATT 58.654 33.333 0.00 0.00 0.00 1.28
2251 4414 8.902806 TCAAACTAGGCGATTTCATTGATATTT 58.097 29.630 0.00 0.00 0.00 1.40
2252 4415 8.961092 CAAACTAGGCGATTTCATTGATATTTG 58.039 33.333 0.00 0.00 0.00 2.32
2253 4416 7.807977 ACTAGGCGATTTCATTGATATTTGT 57.192 32.000 0.00 0.00 0.00 2.83
2254 4417 8.902540 ACTAGGCGATTTCATTGATATTTGTA 57.097 30.769 0.00 0.00 0.00 2.41
2255 4418 8.774586 ACTAGGCGATTTCATTGATATTTGTAC 58.225 33.333 0.00 0.00 0.00 2.90
2256 4419 7.566760 AGGCGATTTCATTGATATTTGTACA 57.433 32.000 0.00 0.00 0.00 2.90
2257 4420 8.169977 AGGCGATTTCATTGATATTTGTACAT 57.830 30.769 0.00 0.00 0.00 2.29
2258 4421 9.283768 AGGCGATTTCATTGATATTTGTACATA 57.716 29.630 0.00 0.00 0.00 2.29
2259 4422 9.891828 GGCGATTTCATTGATATTTGTACATAA 57.108 29.630 0.00 0.00 0.00 1.90
2303 4466 7.806149 AAAACATAACTAAAACTATTGCGCC 57.194 32.000 4.18 0.00 0.00 6.53
2304 4467 6.503589 AACATAACTAAAACTATTGCGCCA 57.496 33.333 4.18 0.00 0.00 5.69
2305 4468 5.875930 ACATAACTAAAACTATTGCGCCAC 58.124 37.500 4.18 0.00 0.00 5.01
2306 4469 3.842732 AACTAAAACTATTGCGCCACC 57.157 42.857 4.18 0.00 0.00 4.61
2307 4470 1.735571 ACTAAAACTATTGCGCCACCG 59.264 47.619 4.18 0.00 37.57 4.94
2308 4471 1.735571 CTAAAACTATTGCGCCACCGT 59.264 47.619 4.18 0.00 36.67 4.83
2309 4472 0.519961 AAAACTATTGCGCCACCGTC 59.480 50.000 4.18 0.00 36.67 4.79
2310 4473 1.303091 AAACTATTGCGCCACCGTCC 61.303 55.000 4.18 0.00 36.67 4.79
2311 4474 3.261951 CTATTGCGCCACCGTCCG 61.262 66.667 4.18 0.00 36.67 4.79
2323 4486 3.458163 CGTCCGCTGCCCCTTCTA 61.458 66.667 0.00 0.00 0.00 2.10
2324 4487 2.187163 GTCCGCTGCCCCTTCTAC 59.813 66.667 0.00 0.00 0.00 2.59
2325 4488 2.284331 TCCGCTGCCCCTTCTACA 60.284 61.111 0.00 0.00 0.00 2.74
2326 4489 2.187946 CCGCTGCCCCTTCTACAG 59.812 66.667 0.00 0.00 34.48 2.74
2327 4490 2.187946 CGCTGCCCCTTCTACAGG 59.812 66.667 0.00 0.00 43.49 4.00
2329 4492 2.592308 CTGCCCCTTCTACAGGCC 59.408 66.667 0.00 0.00 46.55 5.19
2330 4493 3.391665 CTGCCCCTTCTACAGGCCG 62.392 68.421 0.00 0.00 46.55 6.13
2331 4494 3.400054 GCCCCTTCTACAGGCCGT 61.400 66.667 0.00 0.49 42.29 5.68
2332 4495 2.062177 GCCCCTTCTACAGGCCGTA 61.062 63.158 0.00 1.87 42.29 4.02
2341 4504 2.590007 CAGGCCGTAGAGCATGCC 60.590 66.667 15.66 6.03 44.35 4.40
2343 4506 4.221422 GGCCGTAGAGCATGCCGA 62.221 66.667 15.66 0.00 33.59 5.54
2344 4507 2.202878 GCCGTAGAGCATGCCGAA 60.203 61.111 15.66 0.00 0.00 4.30
2345 4508 2.240500 GCCGTAGAGCATGCCGAAG 61.241 63.158 15.66 4.78 0.00 3.79
2357 4520 3.777925 CCGAAGGCGCTGTTGTCG 61.778 66.667 7.64 9.39 46.14 4.35
2365 4528 4.077188 GCTGTTGTCGCTGCCGTC 62.077 66.667 0.00 0.00 35.54 4.79
2366 4529 3.767230 CTGTTGTCGCTGCCGTCG 61.767 66.667 0.00 0.00 35.54 5.12
2367 4530 4.578898 TGTTGTCGCTGCCGTCGT 62.579 61.111 0.00 0.00 35.54 4.34
2368 4531 3.764049 GTTGTCGCTGCCGTCGTC 61.764 66.667 0.00 0.00 35.54 4.20
2374 4537 4.500116 GCTGCCGTCGTCCTCCTC 62.500 72.222 0.00 0.00 0.00 3.71
2375 4538 3.827898 CTGCCGTCGTCCTCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
2376 4539 4.361971 TGCCGTCGTCCTCCTCCT 62.362 66.667 0.00 0.00 0.00 3.69
2377 4540 3.069318 GCCGTCGTCCTCCTCCTT 61.069 66.667 0.00 0.00 0.00 3.36
2378 4541 3.066233 GCCGTCGTCCTCCTCCTTC 62.066 68.421 0.00 0.00 0.00 3.46
2379 4542 1.378778 CCGTCGTCCTCCTCCTTCT 60.379 63.158 0.00 0.00 0.00 2.85
2380 4543 0.966370 CCGTCGTCCTCCTCCTTCTT 60.966 60.000 0.00 0.00 0.00 2.52
2381 4544 0.452585 CGTCGTCCTCCTCCTTCTTC 59.547 60.000 0.00 0.00 0.00 2.87
2382 4545 1.546961 GTCGTCCTCCTCCTTCTTCA 58.453 55.000 0.00 0.00 0.00 3.02
2383 4546 1.202817 GTCGTCCTCCTCCTTCTTCAC 59.797 57.143 0.00 0.00 0.00 3.18
2384 4547 0.171455 CGTCCTCCTCCTTCTTCACG 59.829 60.000 0.00 0.00 0.00 4.35
2385 4548 0.108567 GTCCTCCTCCTTCTTCACGC 60.109 60.000 0.00 0.00 0.00 5.34
2386 4549 1.219393 CCTCCTCCTTCTTCACGCC 59.781 63.158 0.00 0.00 0.00 5.68
2387 4550 1.153745 CTCCTCCTTCTTCACGCCG 60.154 63.158 0.00 0.00 0.00 6.46
2388 4551 1.878656 CTCCTCCTTCTTCACGCCGT 61.879 60.000 0.00 0.00 0.00 5.68
2389 4552 1.446272 CCTCCTTCTTCACGCCGTC 60.446 63.158 0.00 0.00 0.00 4.79
2390 4553 1.801913 CTCCTTCTTCACGCCGTCG 60.802 63.158 0.00 0.00 42.43 5.12
2391 4554 3.479269 CCTTCTTCACGCCGTCGC 61.479 66.667 0.00 0.00 39.84 5.19
2392 4555 3.479269 CTTCTTCACGCCGTCGCC 61.479 66.667 0.00 0.00 39.84 5.54
2408 4571 3.885521 CCGCCGTCGTCCTCCTAC 61.886 72.222 0.00 0.00 0.00 3.18
2409 4572 2.823147 CGCCGTCGTCCTCCTACT 60.823 66.667 0.00 0.00 0.00 2.57
2410 4573 2.404995 CGCCGTCGTCCTCCTACTT 61.405 63.158 0.00 0.00 0.00 2.24
2411 4574 1.432657 GCCGTCGTCCTCCTACTTC 59.567 63.158 0.00 0.00 0.00 3.01
2412 4575 1.031029 GCCGTCGTCCTCCTACTTCT 61.031 60.000 0.00 0.00 0.00 2.85
2413 4576 1.461559 CCGTCGTCCTCCTACTTCTT 58.538 55.000 0.00 0.00 0.00 2.52
2414 4577 1.401199 CCGTCGTCCTCCTACTTCTTC 59.599 57.143 0.00 0.00 0.00 2.87
2415 4578 2.082231 CGTCGTCCTCCTACTTCTTCA 58.918 52.381 0.00 0.00 0.00 3.02
2416 4579 2.159544 CGTCGTCCTCCTACTTCTTCAC 60.160 54.545 0.00 0.00 0.00 3.18
2417 4580 2.082231 TCGTCCTCCTACTTCTTCACG 58.918 52.381 0.00 0.00 0.00 4.35
2418 4581 1.467713 CGTCCTCCTACTTCTTCACGC 60.468 57.143 0.00 0.00 0.00 5.34
2419 4582 1.135053 GTCCTCCTACTTCTTCACGCC 60.135 57.143 0.00 0.00 0.00 5.68
2420 4583 0.179134 CCTCCTACTTCTTCACGCCG 60.179 60.000 0.00 0.00 0.00 6.46
2421 4584 0.526662 CTCCTACTTCTTCACGCCGT 59.473 55.000 0.00 0.00 0.00 5.68
2422 4585 0.524862 TCCTACTTCTTCACGCCGTC 59.475 55.000 0.00 0.00 0.00 4.79
2423 4586 0.797249 CCTACTTCTTCACGCCGTCG 60.797 60.000 0.00 0.00 42.43 5.12
2424 4587 1.403972 CTACTTCTTCACGCCGTCGC 61.404 60.000 0.00 0.00 39.84 5.19
2425 4588 2.807631 TACTTCTTCACGCCGTCGCC 62.808 60.000 0.00 0.00 39.84 5.54
2435 4598 4.124351 CCGTCGCCGTCCTTGCTA 62.124 66.667 0.00 0.00 0.00 3.49
2436 4599 2.879462 CGTCGCCGTCCTTGCTAC 60.879 66.667 0.00 0.00 0.00 3.58
2437 4600 2.260434 GTCGCCGTCCTTGCTACA 59.740 61.111 0.00 0.00 0.00 2.74
2438 4601 2.092882 GTCGCCGTCCTTGCTACAC 61.093 63.158 0.00 0.00 0.00 2.90
2439 4602 2.048597 CGCCGTCCTTGCTACACA 60.049 61.111 0.00 0.00 0.00 3.72
2440 4603 2.380410 CGCCGTCCTTGCTACACAC 61.380 63.158 0.00 0.00 0.00 3.82
2441 4604 2.033194 GCCGTCCTTGCTACACACC 61.033 63.158 0.00 0.00 0.00 4.16
2442 4605 1.671742 CCGTCCTTGCTACACACCT 59.328 57.895 0.00 0.00 0.00 4.00
2443 4606 0.670546 CCGTCCTTGCTACACACCTG 60.671 60.000 0.00 0.00 0.00 4.00
2444 4607 1.291877 CGTCCTTGCTACACACCTGC 61.292 60.000 0.00 0.00 0.00 4.85
2445 4608 0.955919 GTCCTTGCTACACACCTGCC 60.956 60.000 0.00 0.00 0.00 4.85
2446 4609 1.675641 CCTTGCTACACACCTGCCC 60.676 63.158 0.00 0.00 0.00 5.36
2447 4610 1.376466 CTTGCTACACACCTGCCCT 59.624 57.895 0.00 0.00 0.00 5.19
2448 4611 0.957395 CTTGCTACACACCTGCCCTG 60.957 60.000 0.00 0.00 0.00 4.45
2449 4612 2.045926 GCTACACACCTGCCCTGG 60.046 66.667 0.00 0.00 0.00 4.45
2450 4613 2.671070 CTACACACCTGCCCTGGG 59.329 66.667 8.86 8.86 0.00 4.45
2451 4614 2.933287 TACACACCTGCCCTGGGG 60.933 66.667 16.03 4.75 36.37 4.96
2470 4633 2.668550 GCCTTGGCGGACGAGTTT 60.669 61.111 0.00 0.00 33.16 2.66
2471 4634 2.966309 GCCTTGGCGGACGAGTTTG 61.966 63.158 0.00 0.00 33.16 2.93
2472 4635 2.325082 CCTTGGCGGACGAGTTTGG 61.325 63.158 0.00 0.00 33.16 3.28
2473 4636 1.597027 CTTGGCGGACGAGTTTGGT 60.597 57.895 0.00 0.00 0.00 3.67
2474 4637 1.153127 TTGGCGGACGAGTTTGGTT 60.153 52.632 0.00 0.00 0.00 3.67
2475 4638 1.440938 TTGGCGGACGAGTTTGGTTG 61.441 55.000 0.00 0.00 0.00 3.77
2476 4639 2.613506 GGCGGACGAGTTTGGTTGG 61.614 63.158 0.00 0.00 0.00 3.77
2477 4640 2.943653 CGGACGAGTTTGGTTGGC 59.056 61.111 0.00 0.00 0.00 4.52
2478 4641 2.943653 GGACGAGTTTGGTTGGCG 59.056 61.111 0.00 0.00 0.00 5.69
2479 4642 2.613506 GGACGAGTTTGGTTGGCGG 61.614 63.158 0.00 0.00 0.00 6.13
2480 4643 3.249973 GACGAGTTTGGTTGGCGGC 62.250 63.158 0.00 0.00 0.00 6.53
2481 4644 3.283684 CGAGTTTGGTTGGCGGCA 61.284 61.111 7.97 7.97 0.00 5.69
2482 4645 2.644992 GAGTTTGGTTGGCGGCAG 59.355 61.111 12.87 0.00 0.00 4.85
2483 4646 2.123897 AGTTTGGTTGGCGGCAGT 60.124 55.556 12.87 0.00 0.00 4.40
2484 4647 2.027460 GTTTGGTTGGCGGCAGTG 59.973 61.111 12.87 0.00 0.00 3.66
2485 4648 3.222855 TTTGGTTGGCGGCAGTGG 61.223 61.111 12.87 0.00 0.00 4.00
2486 4649 4.514585 TTGGTTGGCGGCAGTGGT 62.515 61.111 12.87 0.00 0.00 4.16
2497 4660 3.463505 CAGTGGTGCATCGTCGTC 58.536 61.111 0.00 0.00 0.00 4.20
2498 4661 1.372872 CAGTGGTGCATCGTCGTCA 60.373 57.895 0.00 0.00 0.00 4.35
2499 4662 1.372997 AGTGGTGCATCGTCGTCAC 60.373 57.895 0.00 0.00 0.00 3.67
2500 4663 1.372997 GTGGTGCATCGTCGTCACT 60.373 57.895 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.516227 TCTTCACCACCAACCACAAA 57.484 45.000 0.00 0.00 0.00 2.83
127 128 6.732896 AATCGATTGTCACCTACTCCTATT 57.267 37.500 10.50 0.00 0.00 1.73
128 129 6.463049 CCAAATCGATTGTCACCTACTCCTAT 60.463 42.308 12.25 0.00 37.32 2.57
228 229 1.079819 CTGGGTCACTGTACAGGCG 60.080 63.158 26.12 16.65 0.00 5.52
233 234 2.826128 TCACTGATCTGGGTCACTGTAC 59.174 50.000 1.40 0.00 0.00 2.90
321 322 3.694072 TCAAACAAAACTCTGGGTGACTG 59.306 43.478 0.00 0.00 0.00 3.51
322 323 3.963129 TCAAACAAAACTCTGGGTGACT 58.037 40.909 0.00 0.00 0.00 3.41
369 1067 5.191426 TCGATTCTTGCCAGTAGTAGTACT 58.809 41.667 8.14 8.14 40.38 2.73
370 1068 5.496133 TCGATTCTTGCCAGTAGTAGTAC 57.504 43.478 0.00 0.00 0.00 2.73
372 1070 5.127194 TGAATCGATTCTTGCCAGTAGTAGT 59.873 40.000 32.08 0.00 37.67 2.73
374 1072 5.592104 TGAATCGATTCTTGCCAGTAGTA 57.408 39.130 32.08 10.32 37.67 1.82
375 1073 4.471904 TGAATCGATTCTTGCCAGTAGT 57.528 40.909 32.08 0.00 37.67 2.73
376 1074 5.111989 TCTTGAATCGATTCTTGCCAGTAG 58.888 41.667 32.08 17.85 37.67 2.57
378 1076 3.942829 TCTTGAATCGATTCTTGCCAGT 58.057 40.909 32.08 0.00 37.67 4.00
379 1077 4.952262 TTCTTGAATCGATTCTTGCCAG 57.048 40.909 32.08 20.89 37.67 4.85
380 1078 5.703978 TTTTCTTGAATCGATTCTTGCCA 57.296 34.783 32.08 14.68 37.67 4.92
572 2705 1.446099 GAAGATGTCGACTGCGCCA 60.446 57.895 17.92 0.00 37.46 5.69
659 2792 2.816360 TATGACCTCGACGTCGGCG 61.816 63.158 35.05 26.38 44.93 6.46
672 2805 2.858344 CCTCCATTTCGACGTGTATGAC 59.142 50.000 0.00 0.00 0.00 3.06
1014 3147 2.433318 AAGCTCAGCTTCGACGCC 60.433 61.111 5.91 0.00 46.77 5.68
1258 3391 2.168936 TGTACAACCGTGTCTTCTTGGT 59.831 45.455 0.00 0.00 39.30 3.67
1269 3402 2.428622 GGCACCCTGTACAACCGT 59.571 61.111 0.00 0.00 0.00 4.83
1455 3588 2.293318 ATCCCCGAACAGCAGAGCA 61.293 57.895 0.00 0.00 0.00 4.26
1487 3620 3.303135 AGCGTCAGTTGGAGCCGA 61.303 61.111 0.00 0.00 0.00 5.54
1499 3632 2.125512 CCCCACTGCTACAGCGTC 60.126 66.667 0.00 0.00 45.83 5.19
1562 3695 4.817517 GTTTTTCACGACTCCTCCATAGA 58.182 43.478 0.00 0.00 0.00 1.98
1576 3709 0.379316 ACCGACCTTGCGTTTTTCAC 59.621 50.000 0.00 0.00 0.00 3.18
1577 3710 1.096416 AACCGACCTTGCGTTTTTCA 58.904 45.000 0.00 0.00 0.00 2.69
1584 3742 1.501741 CATTCCAACCGACCTTGCG 59.498 57.895 0.00 0.00 0.00 4.85
1598 3756 4.217510 TGGTCAATCATCAATCCCCATTC 58.782 43.478 0.00 0.00 0.00 2.67
1701 3863 3.118371 AGTTTCGAAGAAACCAGTCACCT 60.118 43.478 18.51 0.00 45.90 4.00
1702 3864 3.203716 AGTTTCGAAGAAACCAGTCACC 58.796 45.455 18.51 0.00 45.90 4.02
1745 3907 1.644786 GGATCCCACTTTTGACGCCG 61.645 60.000 0.00 0.00 0.00 6.46
1759 3922 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
1760 3923 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
1761 3924 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
1765 3928 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
1766 3929 3.695747 GAGGAGGGAGCAGGCAAGC 62.696 68.421 0.00 0.00 0.00 4.01
1767 3930 1.633915 ATGAGGAGGGAGCAGGCAAG 61.634 60.000 0.00 0.00 0.00 4.01
1768 3931 1.617536 ATGAGGAGGGAGCAGGCAA 60.618 57.895 0.00 0.00 0.00 4.52
1769 3932 2.041762 ATGAGGAGGGAGCAGGCA 59.958 61.111 0.00 0.00 0.00 4.75
1770 3933 2.509916 CATGAGGAGGGAGCAGGC 59.490 66.667 0.00 0.00 0.00 4.85
1771 3934 1.633915 AAGCATGAGGAGGGAGCAGG 61.634 60.000 0.00 0.00 0.00 4.85
1772 3935 0.255318 AAAGCATGAGGAGGGAGCAG 59.745 55.000 0.00 0.00 0.00 4.24
1773 3936 0.254178 GAAAGCATGAGGAGGGAGCA 59.746 55.000 0.00 0.00 0.00 4.26
1774 3937 0.254178 TGAAAGCATGAGGAGGGAGC 59.746 55.000 0.00 0.00 0.00 4.70
1775 3938 3.212685 GAATGAAAGCATGAGGAGGGAG 58.787 50.000 0.00 0.00 34.26 4.30
1776 3939 2.420547 CGAATGAAAGCATGAGGAGGGA 60.421 50.000 0.00 0.00 34.26 4.20
1777 3940 1.945394 CGAATGAAAGCATGAGGAGGG 59.055 52.381 0.00 0.00 34.26 4.30
1778 3941 2.353889 CACGAATGAAAGCATGAGGAGG 59.646 50.000 0.00 0.00 34.26 4.30
1779 3942 3.005554 ACACGAATGAAAGCATGAGGAG 58.994 45.455 0.00 0.00 34.26 3.69
1780 3943 3.057969 ACACGAATGAAAGCATGAGGA 57.942 42.857 0.00 0.00 34.26 3.71
1781 3944 3.426695 GGAACACGAATGAAAGCATGAGG 60.427 47.826 0.00 0.00 34.26 3.86
1782 3945 3.426695 GGGAACACGAATGAAAGCATGAG 60.427 47.826 0.00 0.00 34.26 2.90
1783 3946 2.487762 GGGAACACGAATGAAAGCATGA 59.512 45.455 0.00 0.00 34.26 3.07
1784 3947 2.228582 TGGGAACACGAATGAAAGCATG 59.771 45.455 0.00 0.00 32.00 4.06
1785 3948 2.513753 TGGGAACACGAATGAAAGCAT 58.486 42.857 0.00 0.00 32.77 3.79
1786 3949 1.974265 TGGGAACACGAATGAAAGCA 58.026 45.000 0.00 0.00 33.40 3.91
1798 3961 2.614481 GCCGTAGAATGAAGTGGGAACA 60.614 50.000 0.00 0.00 38.70 3.18
1799 3962 2.007608 GCCGTAGAATGAAGTGGGAAC 58.992 52.381 0.00 0.00 0.00 3.62
1800 3963 1.906574 AGCCGTAGAATGAAGTGGGAA 59.093 47.619 0.00 0.00 0.00 3.97
1801 3964 1.207089 CAGCCGTAGAATGAAGTGGGA 59.793 52.381 0.00 0.00 0.00 4.37
1802 3965 1.066143 ACAGCCGTAGAATGAAGTGGG 60.066 52.381 0.00 0.00 0.00 4.61
1803 3966 2.093973 AGACAGCCGTAGAATGAAGTGG 60.094 50.000 0.00 0.00 0.00 4.00
1804 3967 3.238108 AGACAGCCGTAGAATGAAGTG 57.762 47.619 0.00 0.00 0.00 3.16
1805 3968 3.963428 AAGACAGCCGTAGAATGAAGT 57.037 42.857 0.00 0.00 0.00 3.01
1806 3969 5.613358 AAAAAGACAGCCGTAGAATGAAG 57.387 39.130 0.00 0.00 0.00 3.02
1848 4011 3.052944 TCACCCTCTTAAAATCATGGGGG 60.053 47.826 0.00 0.00 39.38 5.40
1849 4012 4.079787 TCTCACCCTCTTAAAATCATGGGG 60.080 45.833 0.00 0.00 38.94 4.96
1850 4013 4.884164 GTCTCACCCTCTTAAAATCATGGG 59.116 45.833 0.00 0.00 40.37 4.00
1851 4014 4.572389 CGTCTCACCCTCTTAAAATCATGG 59.428 45.833 0.00 0.00 0.00 3.66
1852 4015 4.572389 CCGTCTCACCCTCTTAAAATCATG 59.428 45.833 0.00 0.00 0.00 3.07
1853 4016 4.225267 ACCGTCTCACCCTCTTAAAATCAT 59.775 41.667 0.00 0.00 0.00 2.45
1854 4017 3.581332 ACCGTCTCACCCTCTTAAAATCA 59.419 43.478 0.00 0.00 0.00 2.57
1855 4018 4.203654 ACCGTCTCACCCTCTTAAAATC 57.796 45.455 0.00 0.00 0.00 2.17
1856 4019 4.286291 AGAACCGTCTCACCCTCTTAAAAT 59.714 41.667 0.00 0.00 0.00 1.82
1857 4020 3.644738 AGAACCGTCTCACCCTCTTAAAA 59.355 43.478 0.00 0.00 0.00 1.52
1858 4021 3.236896 AGAACCGTCTCACCCTCTTAAA 58.763 45.455 0.00 0.00 0.00 1.52
1859 4022 2.885616 AGAACCGTCTCACCCTCTTAA 58.114 47.619 0.00 0.00 0.00 1.85
1860 4023 2.599408 AGAACCGTCTCACCCTCTTA 57.401 50.000 0.00 0.00 0.00 2.10
1861 4024 1.718280 AAGAACCGTCTCACCCTCTT 58.282 50.000 0.00 0.00 30.70 2.85
1862 4025 2.599408 TAAGAACCGTCTCACCCTCT 57.401 50.000 0.00 0.00 30.70 3.69
1863 4026 3.889520 AATAAGAACCGTCTCACCCTC 57.110 47.619 0.00 0.00 30.70 4.30
1864 4027 4.202430 ACAAAATAAGAACCGTCTCACCCT 60.202 41.667 0.00 0.00 30.70 4.34
1865 4028 4.070009 ACAAAATAAGAACCGTCTCACCC 58.930 43.478 0.00 0.00 30.70 4.61
1866 4029 5.334646 GGAACAAAATAAGAACCGTCTCACC 60.335 44.000 0.00 0.00 30.70 4.02
1867 4030 5.237779 TGGAACAAAATAAGAACCGTCTCAC 59.762 40.000 0.00 0.00 31.92 3.51
1868 4031 5.369833 TGGAACAAAATAAGAACCGTCTCA 58.630 37.500 0.00 0.00 31.92 3.27
1869 4032 5.934935 TGGAACAAAATAAGAACCGTCTC 57.065 39.130 0.00 0.00 31.92 3.36
1885 4048 3.305267 CGTGGCTTGATTTGATTGGAACA 60.305 43.478 0.00 0.00 0.00 3.18
1886 4049 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
1887 4050 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
1888 4051 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
1889 4052 3.727673 CGTACGTGGCTTGATTTGATTGG 60.728 47.826 7.22 0.00 0.00 3.16
1890 4053 3.416277 CGTACGTGGCTTGATTTGATTG 58.584 45.455 7.22 0.00 0.00 2.67
1891 4054 2.159572 GCGTACGTGGCTTGATTTGATT 60.160 45.455 17.90 0.00 0.00 2.57
1892 4055 1.396996 GCGTACGTGGCTTGATTTGAT 59.603 47.619 17.90 0.00 0.00 2.57
1893 4056 0.793861 GCGTACGTGGCTTGATTTGA 59.206 50.000 17.90 0.00 0.00 2.69
1894 4057 0.518355 CGCGTACGTGGCTTGATTTG 60.518 55.000 20.84 0.00 33.53 2.32
1895 4058 1.632046 CCGCGTACGTGGCTTGATTT 61.632 55.000 32.68 0.00 39.06 2.17
1896 4059 2.098233 CCGCGTACGTGGCTTGATT 61.098 57.895 32.68 0.00 39.06 2.57
1897 4060 2.508439 CCGCGTACGTGGCTTGAT 60.508 61.111 32.68 0.00 39.06 2.57
1898 4061 4.728102 CCCGCGTACGTGGCTTGA 62.728 66.667 36.56 0.00 43.94 3.02
1899 4062 4.728102 TCCCGCGTACGTGGCTTG 62.728 66.667 36.56 25.05 43.94 4.01
1900 4063 4.430765 CTCCCGCGTACGTGGCTT 62.431 66.667 36.56 0.00 43.94 4.35
1907 4070 4.203076 ATCCGTGCTCCCGCGTAC 62.203 66.667 4.92 0.00 43.11 3.67
1908 4071 4.201679 CATCCGTGCTCCCGCGTA 62.202 66.667 4.92 0.00 43.11 4.42
1912 4075 3.770040 TGTCCATCCGTGCTCCCG 61.770 66.667 0.00 0.00 0.00 5.14
1913 4076 2.125106 GTGTCCATCCGTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
1914 4077 1.741770 GTGTGTCCATCCGTGCTCC 60.742 63.158 0.00 0.00 0.00 4.70
1915 4078 2.094659 CGTGTGTCCATCCGTGCTC 61.095 63.158 0.00 0.00 0.00 4.26
1916 4079 2.048222 CGTGTGTCCATCCGTGCT 60.048 61.111 0.00 0.00 0.00 4.40
1917 4080 3.788766 GCGTGTGTCCATCCGTGC 61.789 66.667 0.00 0.00 0.00 5.34
1918 4081 3.478394 CGCGTGTGTCCATCCGTG 61.478 66.667 0.00 0.00 0.00 4.94
1919 4082 4.735132 CCGCGTGTGTCCATCCGT 62.735 66.667 4.92 0.00 0.00 4.69
1921 4084 4.077184 TCCCGCGTGTGTCCATCC 62.077 66.667 4.92 0.00 0.00 3.51
1922 4085 2.509336 CTCCCGCGTGTGTCCATC 60.509 66.667 4.92 0.00 0.00 3.51
1923 4086 4.082523 CCTCCCGCGTGTGTCCAT 62.083 66.667 4.92 0.00 0.00 3.41
1925 4088 4.436998 CTCCTCCCGCGTGTGTCC 62.437 72.222 4.92 0.00 0.00 4.02
1934 4097 3.672295 GACTTGCCTGCTCCTCCCG 62.672 68.421 0.00 0.00 0.00 5.14
1935 4098 2.250741 GAGACTTGCCTGCTCCTCCC 62.251 65.000 0.00 0.00 0.00 4.30
1936 4099 1.220477 GAGACTTGCCTGCTCCTCC 59.780 63.158 0.00 0.00 0.00 4.30
1937 4100 1.153667 CGAGACTTGCCTGCTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
1938 4101 1.882989 GACGAGACTTGCCTGCTCCT 61.883 60.000 0.00 0.00 0.00 3.69
1939 4102 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
1940 4103 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
1941 4104 1.548357 ATGGACGAGACTTGCCTGCT 61.548 55.000 0.00 0.00 0.00 4.24
1942 4105 1.078848 ATGGACGAGACTTGCCTGC 60.079 57.895 0.00 0.00 0.00 4.85
1943 4106 0.247460 TGATGGACGAGACTTGCCTG 59.753 55.000 0.00 0.00 0.00 4.85
1944 4107 0.976641 TTGATGGACGAGACTTGCCT 59.023 50.000 0.00 0.00 0.00 4.75
1945 4108 1.363744 CTTGATGGACGAGACTTGCC 58.636 55.000 0.00 0.00 31.94 4.52
1946 4109 1.363744 CCTTGATGGACGAGACTTGC 58.636 55.000 0.00 0.00 38.35 4.01
1947 4110 1.066573 AGCCTTGATGGACGAGACTTG 60.067 52.381 0.00 0.00 38.35 3.16
1948 4111 1.270907 AGCCTTGATGGACGAGACTT 58.729 50.000 0.00 0.00 38.35 3.01
1949 4112 1.270907 AAGCCTTGATGGACGAGACT 58.729 50.000 0.00 0.00 38.35 3.24
1950 4113 1.734465 CAAAGCCTTGATGGACGAGAC 59.266 52.381 0.00 0.00 38.35 3.36
1951 4114 1.347707 ACAAAGCCTTGATGGACGAGA 59.652 47.619 1.09 0.00 38.35 4.04
1952 4115 1.813513 ACAAAGCCTTGATGGACGAG 58.186 50.000 1.09 0.00 38.35 4.18
1953 4116 1.879380 CAACAAAGCCTTGATGGACGA 59.121 47.619 1.09 0.00 38.35 4.20
1954 4117 2.336554 CAACAAAGCCTTGATGGACG 57.663 50.000 1.09 0.00 38.35 4.79
1958 4121 0.037046 GGCCCAACAAAGCCTTGATG 60.037 55.000 1.09 0.00 46.14 3.07
1959 4122 2.365410 GGCCCAACAAAGCCTTGAT 58.635 52.632 1.09 0.00 46.14 2.57
1960 4123 3.869481 GGCCCAACAAAGCCTTGA 58.131 55.556 1.09 0.00 46.14 3.02
1964 4127 2.439104 TTGGTGGCCCAACAAAGCC 61.439 57.895 12.88 0.00 45.93 4.35
1965 4128 3.225235 TTGGTGGCCCAACAAAGC 58.775 55.556 12.88 0.00 45.93 3.51
1972 4135 1.907807 GTGCTCAATTGGTGGCCCA 60.908 57.895 5.42 0.00 39.65 5.36
1973 4136 2.973082 GTGCTCAATTGGTGGCCC 59.027 61.111 5.42 0.00 0.00 5.80
1974 4137 2.568090 CGTGCTCAATTGGTGGCC 59.432 61.111 5.42 0.00 0.00 5.36
1975 4138 2.126346 GCGTGCTCAATTGGTGGC 60.126 61.111 5.42 8.57 0.00 5.01
1976 4139 2.568090 GGCGTGCTCAATTGGTGG 59.432 61.111 5.42 0.00 0.00 4.61
1977 4140 1.926511 GAGGGCGTGCTCAATTGGTG 61.927 60.000 5.42 0.31 0.00 4.17
1978 4141 1.675641 GAGGGCGTGCTCAATTGGT 60.676 57.895 5.42 0.00 0.00 3.67
1979 4142 2.753966 CGAGGGCGTGCTCAATTGG 61.754 63.158 5.42 0.00 0.00 3.16
1980 4143 2.787249 CGAGGGCGTGCTCAATTG 59.213 61.111 0.00 0.00 0.00 2.32
2005 4168 2.548057 GGAGTCGTCTGTGCATGAAAAA 59.452 45.455 0.00 0.00 0.00 1.94
2006 4169 2.143122 GGAGTCGTCTGTGCATGAAAA 58.857 47.619 0.00 0.00 0.00 2.29
2007 4170 1.608025 GGGAGTCGTCTGTGCATGAAA 60.608 52.381 0.00 0.00 0.00 2.69
2008 4171 0.037326 GGGAGTCGTCTGTGCATGAA 60.037 55.000 0.00 0.00 0.00 2.57
2009 4172 1.184970 TGGGAGTCGTCTGTGCATGA 61.185 55.000 0.00 0.00 0.00 3.07
2010 4173 0.320683 TTGGGAGTCGTCTGTGCATG 60.321 55.000 0.00 0.00 0.00 4.06
2011 4174 0.036952 CTTGGGAGTCGTCTGTGCAT 60.037 55.000 0.00 0.00 0.00 3.96
2012 4175 1.367471 CTTGGGAGTCGTCTGTGCA 59.633 57.895 0.00 0.00 0.00 4.57
2013 4176 1.374758 CCTTGGGAGTCGTCTGTGC 60.375 63.158 0.00 0.00 0.00 4.57
2014 4177 1.374758 GCCTTGGGAGTCGTCTGTG 60.375 63.158 0.00 0.00 0.00 3.66
2015 4178 2.932234 CGCCTTGGGAGTCGTCTGT 61.932 63.158 0.00 0.00 0.00 3.41
2016 4179 2.125912 CGCCTTGGGAGTCGTCTG 60.126 66.667 0.00 0.00 0.00 3.51
2017 4180 2.282958 TCGCCTTGGGAGTCGTCT 60.283 61.111 0.00 0.00 0.00 4.18
2018 4181 1.310933 TAGTCGCCTTGGGAGTCGTC 61.311 60.000 0.00 0.00 30.87 4.20
2019 4182 1.303888 TAGTCGCCTTGGGAGTCGT 60.304 57.895 0.00 0.00 30.87 4.34
2020 4183 1.433879 CTAGTCGCCTTGGGAGTCG 59.566 63.158 0.00 0.00 30.87 4.18
2021 4184 0.971447 ACCTAGTCGCCTTGGGAGTC 60.971 60.000 0.00 0.00 37.84 3.36
2022 4185 0.544595 AACCTAGTCGCCTTGGGAGT 60.545 55.000 0.00 0.00 37.84 3.85
2023 4186 1.409427 CTAACCTAGTCGCCTTGGGAG 59.591 57.143 0.00 0.00 37.84 4.30
2024 4187 1.006281 TCTAACCTAGTCGCCTTGGGA 59.994 52.381 0.00 0.00 37.84 4.37
2025 4188 1.409427 CTCTAACCTAGTCGCCTTGGG 59.591 57.143 0.00 0.00 37.84 4.12
2026 4189 1.202428 GCTCTAACCTAGTCGCCTTGG 60.202 57.143 0.00 0.00 39.25 3.61
2027 4190 1.534175 CGCTCTAACCTAGTCGCCTTG 60.534 57.143 0.00 0.00 0.00 3.61
2028 4191 0.739561 CGCTCTAACCTAGTCGCCTT 59.260 55.000 0.00 0.00 0.00 4.35
2029 4192 0.394080 ACGCTCTAACCTAGTCGCCT 60.394 55.000 0.00 0.00 0.00 5.52
2030 4193 0.029167 GACGCTCTAACCTAGTCGCC 59.971 60.000 0.00 0.00 0.00 5.54
2031 4194 1.003652 GAGACGCTCTAACCTAGTCGC 60.004 57.143 0.37 0.00 36.97 5.19
2032 4195 1.598601 GGAGACGCTCTAACCTAGTCG 59.401 57.143 6.78 0.00 36.97 4.18
2033 4196 2.614983 CTGGAGACGCTCTAACCTAGTC 59.385 54.545 6.78 0.00 0.00 2.59
2034 4197 2.645802 CTGGAGACGCTCTAACCTAGT 58.354 52.381 6.78 0.00 0.00 2.57
2035 4198 1.335496 GCTGGAGACGCTCTAACCTAG 59.665 57.143 6.78 0.00 0.00 3.02
2036 4199 1.390565 GCTGGAGACGCTCTAACCTA 58.609 55.000 6.78 0.00 0.00 3.08
2037 4200 1.324005 GGCTGGAGACGCTCTAACCT 61.324 60.000 6.78 0.00 0.00 3.50
2038 4201 1.142097 GGCTGGAGACGCTCTAACC 59.858 63.158 6.78 2.76 0.00 2.85
2039 4202 1.226717 CGGCTGGAGACGCTCTAAC 60.227 63.158 6.78 0.00 40.91 2.34
2040 4203 3.197614 CGGCTGGAGACGCTCTAA 58.802 61.111 6.78 0.00 40.91 2.10
2054 4217 4.222847 CCTAGGGAGGCGAACGGC 62.223 72.222 12.58 12.58 35.54 5.68
2055 4218 3.537874 CCCTAGGGAGGCGAACGG 61.538 72.222 24.99 0.00 42.21 4.44
2056 4219 4.222847 GCCCTAGGGAGGCGAACG 62.223 72.222 33.21 1.27 42.21 3.95
2062 4225 3.318313 TCTATTTCAAGCCCTAGGGAGG 58.682 50.000 33.21 18.83 43.33 4.30
2063 4226 3.244387 GCTCTATTTCAAGCCCTAGGGAG 60.244 52.174 33.21 19.51 37.50 4.30
2064 4227 2.706190 GCTCTATTTCAAGCCCTAGGGA 59.294 50.000 33.21 9.86 37.50 4.20
2065 4228 3.133141 GCTCTATTTCAAGCCCTAGGG 57.867 52.381 24.89 24.89 38.57 3.53
2072 4235 0.659957 CAGGCGGCTCTATTTCAAGC 59.340 55.000 9.32 0.00 37.80 4.01
2073 4236 1.303309 CCAGGCGGCTCTATTTCAAG 58.697 55.000 9.32 0.00 0.00 3.02
2074 4237 0.107214 CCCAGGCGGCTCTATTTCAA 60.107 55.000 9.32 0.00 0.00 2.69
2075 4238 1.526887 CCCAGGCGGCTCTATTTCA 59.473 57.895 9.32 0.00 0.00 2.69
2076 4239 1.227973 CCCCAGGCGGCTCTATTTC 60.228 63.158 9.32 0.00 0.00 2.17
2077 4240 2.757124 CCCCCAGGCGGCTCTATTT 61.757 63.158 9.32 0.00 0.00 1.40
2078 4241 3.171388 CCCCCAGGCGGCTCTATT 61.171 66.667 9.32 0.00 0.00 1.73
2097 4260 0.461339 TAATTTCGCCGACAGGGAGC 60.461 55.000 0.00 0.00 38.87 4.70
2098 4261 2.135933 GATAATTTCGCCGACAGGGAG 58.864 52.381 0.00 0.00 38.87 4.30
2099 4262 1.537348 CGATAATTTCGCCGACAGGGA 60.537 52.381 0.00 0.00 41.69 4.20
2100 4263 0.859232 CGATAATTTCGCCGACAGGG 59.141 55.000 0.00 0.00 41.69 4.45
2101 4264 0.859232 CCGATAATTTCGCCGACAGG 59.141 55.000 0.00 0.00 46.71 4.00
2102 4265 0.232303 GCCGATAATTTCGCCGACAG 59.768 55.000 0.00 0.00 46.71 3.51
2103 4266 0.460459 TGCCGATAATTTCGCCGACA 60.460 50.000 0.00 0.00 46.71 4.35
2104 4267 0.865769 ATGCCGATAATTTCGCCGAC 59.134 50.000 0.00 0.00 46.71 4.79
2105 4268 0.865111 CATGCCGATAATTTCGCCGA 59.135 50.000 5.00 0.00 46.71 5.54
2106 4269 0.110238 CCATGCCGATAATTTCGCCG 60.110 55.000 5.00 0.00 46.71 6.46
2107 4270 0.240945 CCCATGCCGATAATTTCGCC 59.759 55.000 5.00 0.00 46.71 5.54
2108 4271 0.240945 CCCCATGCCGATAATTTCGC 59.759 55.000 5.00 0.00 46.71 4.70
2110 4273 0.240945 CGCCCCATGCCGATAATTTC 59.759 55.000 0.00 0.00 36.24 2.17
2111 4274 0.179004 TCGCCCCATGCCGATAATTT 60.179 50.000 0.00 0.00 36.24 1.82
2112 4275 0.038166 ATCGCCCCATGCCGATAATT 59.962 50.000 10.96 0.00 36.24 1.40
2113 4276 0.392998 GATCGCCCCATGCCGATAAT 60.393 55.000 12.16 0.00 34.75 1.28
2114 4277 1.003839 GATCGCCCCATGCCGATAA 60.004 57.895 12.16 0.00 34.75 1.75
2115 4278 2.662596 GATCGCCCCATGCCGATA 59.337 61.111 12.16 0.00 34.75 2.92
2116 4279 4.687215 CGATCGCCCCATGCCGAT 62.687 66.667 0.26 12.06 36.42 4.18
2119 4282 4.875713 AACCGATCGCCCCATGCC 62.876 66.667 10.32 0.00 36.24 4.40
2120 4283 2.828549 AAACCGATCGCCCCATGC 60.829 61.111 10.32 0.00 0.00 4.06
2121 4284 2.186826 GGAAACCGATCGCCCCATG 61.187 63.158 10.32 0.00 0.00 3.66
2122 4285 2.192175 GGAAACCGATCGCCCCAT 59.808 61.111 10.32 0.00 0.00 4.00
2123 4286 4.104183 GGGAAACCGATCGCCCCA 62.104 66.667 20.73 0.00 43.64 4.96
2148 4311 4.748144 CTGGGGTGAGCTTGGGGC 62.748 72.222 0.00 0.00 42.19 5.80
2149 4312 4.748144 GCTGGGGTGAGCTTGGGG 62.748 72.222 0.00 0.00 35.95 4.96
2150 4313 4.748144 GGCTGGGGTGAGCTTGGG 62.748 72.222 0.00 0.00 39.11 4.12
2152 4315 4.020617 TCGGCTGGGGTGAGCTTG 62.021 66.667 0.00 0.00 39.11 4.01
2153 4316 4.021925 GTCGGCTGGGGTGAGCTT 62.022 66.667 0.00 0.00 39.11 3.74
2156 4319 3.530910 AAACGTCGGCTGGGGTGAG 62.531 63.158 0.00 0.00 0.00 3.51
2157 4320 2.612095 AAAAACGTCGGCTGGGGTGA 62.612 55.000 0.00 0.00 0.00 4.02
2158 4321 2.190841 AAAAACGTCGGCTGGGGTG 61.191 57.895 0.00 0.00 0.00 4.61
2159 4322 2.193786 AAAAACGTCGGCTGGGGT 59.806 55.556 0.00 0.00 0.00 4.95
2176 4339 8.747666 CGAATTTTGACCGAGTTTATTTTTCAA 58.252 29.630 0.00 0.00 0.00 2.69
2177 4340 7.380065 CCGAATTTTGACCGAGTTTATTTTTCA 59.620 33.333 0.00 0.00 0.00 2.69
2178 4341 7.618547 GCCGAATTTTGACCGAGTTTATTTTTC 60.619 37.037 0.00 0.00 0.00 2.29
2179 4342 6.144886 GCCGAATTTTGACCGAGTTTATTTTT 59.855 34.615 0.00 0.00 0.00 1.94
2180 4343 5.631929 GCCGAATTTTGACCGAGTTTATTTT 59.368 36.000 0.00 0.00 0.00 1.82
2181 4344 5.158494 GCCGAATTTTGACCGAGTTTATTT 58.842 37.500 0.00 0.00 0.00 1.40
2182 4345 4.380128 GGCCGAATTTTGACCGAGTTTATT 60.380 41.667 0.00 0.00 0.00 1.40
2183 4346 3.128068 GGCCGAATTTTGACCGAGTTTAT 59.872 43.478 0.00 0.00 0.00 1.40
2184 4347 2.485038 GGCCGAATTTTGACCGAGTTTA 59.515 45.455 0.00 0.00 0.00 2.01
2185 4348 1.268625 GGCCGAATTTTGACCGAGTTT 59.731 47.619 0.00 0.00 0.00 2.66
2186 4349 0.879090 GGCCGAATTTTGACCGAGTT 59.121 50.000 0.00 0.00 0.00 3.01
2187 4350 0.250553 TGGCCGAATTTTGACCGAGT 60.251 50.000 0.00 0.00 0.00 4.18
2188 4351 0.878416 TTGGCCGAATTTTGACCGAG 59.122 50.000 0.00 0.00 0.00 4.63
2189 4352 1.001158 GTTTGGCCGAATTTTGACCGA 60.001 47.619 9.15 0.00 0.00 4.69
2190 4353 1.269309 TGTTTGGCCGAATTTTGACCG 60.269 47.619 9.15 0.00 0.00 4.79
2191 4354 2.131972 GTGTTTGGCCGAATTTTGACC 58.868 47.619 9.15 0.00 0.00 4.02
2192 4355 1.784283 CGTGTTTGGCCGAATTTTGAC 59.216 47.619 9.15 0.00 0.00 3.18
2193 4356 1.676529 TCGTGTTTGGCCGAATTTTGA 59.323 42.857 9.15 2.37 0.00 2.69
2194 4357 1.784283 GTCGTGTTTGGCCGAATTTTG 59.216 47.619 9.15 0.00 34.47 2.44
2195 4358 1.405821 TGTCGTGTTTGGCCGAATTTT 59.594 42.857 9.15 0.00 34.47 1.82
2196 4359 1.025812 TGTCGTGTTTGGCCGAATTT 58.974 45.000 9.15 0.00 34.47 1.82
2197 4360 0.309612 GTGTCGTGTTTGGCCGAATT 59.690 50.000 9.15 0.00 34.47 2.17
2198 4361 0.816018 TGTGTCGTGTTTGGCCGAAT 60.816 50.000 9.15 0.00 34.47 3.34
2199 4362 0.816018 ATGTGTCGTGTTTGGCCGAA 60.816 50.000 0.00 0.00 34.47 4.30
2200 4363 0.033642 TATGTGTCGTGTTTGGCCGA 59.966 50.000 0.00 0.00 0.00 5.54
2201 4364 1.083489 ATATGTGTCGTGTTTGGCCG 58.917 50.000 0.00 0.00 0.00 6.13
2202 4365 2.475519 CGAATATGTGTCGTGTTTGGCC 60.476 50.000 0.00 0.00 33.80 5.36
2203 4366 2.475519 CCGAATATGTGTCGTGTTTGGC 60.476 50.000 0.00 0.00 36.77 4.52
2204 4367 2.739913 ACCGAATATGTGTCGTGTTTGG 59.260 45.455 4.07 4.07 36.77 3.28
2205 4368 3.430556 TGACCGAATATGTGTCGTGTTTG 59.569 43.478 0.00 0.00 36.77 2.93
2206 4369 3.655486 TGACCGAATATGTGTCGTGTTT 58.345 40.909 0.00 0.00 36.77 2.83
2207 4370 3.306917 TGACCGAATATGTGTCGTGTT 57.693 42.857 0.00 0.00 36.77 3.32
2208 4371 3.306917 TTGACCGAATATGTGTCGTGT 57.693 42.857 0.00 0.00 36.77 4.49
2209 4372 3.678072 AGTTTGACCGAATATGTGTCGTG 59.322 43.478 0.00 0.00 36.77 4.35
2210 4373 3.921677 AGTTTGACCGAATATGTGTCGT 58.078 40.909 0.00 0.00 36.77 4.34
2211 4374 4.503007 CCTAGTTTGACCGAATATGTGTCG 59.497 45.833 0.00 0.00 38.24 4.35
2212 4375 4.270325 GCCTAGTTTGACCGAATATGTGTC 59.730 45.833 0.00 0.00 0.00 3.67
2213 4376 4.189231 GCCTAGTTTGACCGAATATGTGT 58.811 43.478 0.00 0.00 0.00 3.72
2214 4377 3.245284 CGCCTAGTTTGACCGAATATGTG 59.755 47.826 0.00 0.00 0.00 3.21
2215 4378 3.131577 TCGCCTAGTTTGACCGAATATGT 59.868 43.478 0.00 0.00 0.00 2.29
2216 4379 3.713288 TCGCCTAGTTTGACCGAATATG 58.287 45.455 0.00 0.00 0.00 1.78
2217 4380 4.602340 ATCGCCTAGTTTGACCGAATAT 57.398 40.909 0.00 0.00 0.00 1.28
2218 4381 4.395959 AATCGCCTAGTTTGACCGAATA 57.604 40.909 0.00 0.00 0.00 1.75
2219 4382 2.981859 ATCGCCTAGTTTGACCGAAT 57.018 45.000 0.00 0.00 0.00 3.34
2220 4383 2.754946 AATCGCCTAGTTTGACCGAA 57.245 45.000 0.00 0.00 0.00 4.30
2221 4384 2.028839 TGAAATCGCCTAGTTTGACCGA 60.029 45.455 0.00 0.00 0.00 4.69
2222 4385 2.343101 TGAAATCGCCTAGTTTGACCG 58.657 47.619 0.00 0.00 0.00 4.79
2223 4386 4.394920 TCAATGAAATCGCCTAGTTTGACC 59.605 41.667 0.00 0.00 0.00 4.02
2224 4387 5.545658 TCAATGAAATCGCCTAGTTTGAC 57.454 39.130 0.00 0.00 0.00 3.18
2225 4388 8.450578 AATATCAATGAAATCGCCTAGTTTGA 57.549 30.769 0.00 0.00 0.00 2.69
2226 4389 8.961092 CAAATATCAATGAAATCGCCTAGTTTG 58.039 33.333 0.00 0.00 0.00 2.93
2227 4390 8.686334 ACAAATATCAATGAAATCGCCTAGTTT 58.314 29.630 0.00 0.00 0.00 2.66
2228 4391 8.225603 ACAAATATCAATGAAATCGCCTAGTT 57.774 30.769 0.00 0.00 0.00 2.24
2229 4392 7.807977 ACAAATATCAATGAAATCGCCTAGT 57.192 32.000 0.00 0.00 0.00 2.57
2230 4393 8.773645 TGTACAAATATCAATGAAATCGCCTAG 58.226 33.333 0.00 0.00 0.00 3.02
2231 4394 8.669946 TGTACAAATATCAATGAAATCGCCTA 57.330 30.769 0.00 0.00 0.00 3.93
2232 4395 7.566760 TGTACAAATATCAATGAAATCGCCT 57.433 32.000 0.00 0.00 0.00 5.52
2233 4396 9.891828 TTATGTACAAATATCAATGAAATCGCC 57.108 29.630 0.00 0.00 0.00 5.54
2277 4440 9.344309 GGCGCAATAGTTTTAGTTATGTTTTTA 57.656 29.630 10.83 0.00 0.00 1.52
2278 4441 7.868415 TGGCGCAATAGTTTTAGTTATGTTTTT 59.132 29.630 10.83 0.00 0.00 1.94
2279 4442 7.327518 GTGGCGCAATAGTTTTAGTTATGTTTT 59.672 33.333 10.83 0.00 0.00 2.43
2280 4443 6.804783 GTGGCGCAATAGTTTTAGTTATGTTT 59.195 34.615 10.83 0.00 0.00 2.83
2281 4444 6.319399 GTGGCGCAATAGTTTTAGTTATGTT 58.681 36.000 10.83 0.00 0.00 2.71
2282 4445 5.163693 GGTGGCGCAATAGTTTTAGTTATGT 60.164 40.000 10.83 0.00 0.00 2.29
2283 4446 5.270853 GGTGGCGCAATAGTTTTAGTTATG 58.729 41.667 10.83 0.00 0.00 1.90
2284 4447 4.034742 CGGTGGCGCAATAGTTTTAGTTAT 59.965 41.667 10.83 0.00 0.00 1.89
2285 4448 3.371591 CGGTGGCGCAATAGTTTTAGTTA 59.628 43.478 10.83 0.00 0.00 2.24
2286 4449 2.160813 CGGTGGCGCAATAGTTTTAGTT 59.839 45.455 10.83 0.00 0.00 2.24
2287 4450 1.735571 CGGTGGCGCAATAGTTTTAGT 59.264 47.619 10.83 0.00 0.00 2.24
2288 4451 1.735571 ACGGTGGCGCAATAGTTTTAG 59.264 47.619 10.83 0.00 0.00 1.85
2289 4452 1.733360 GACGGTGGCGCAATAGTTTTA 59.267 47.619 10.83 0.00 0.00 1.52
2290 4453 0.519961 GACGGTGGCGCAATAGTTTT 59.480 50.000 10.83 0.00 0.00 2.43
2291 4454 1.303091 GGACGGTGGCGCAATAGTTT 61.303 55.000 10.83 0.00 0.00 2.66
2292 4455 1.743995 GGACGGTGGCGCAATAGTT 60.744 57.895 10.83 0.00 0.00 2.24
2293 4456 2.125269 GGACGGTGGCGCAATAGT 60.125 61.111 10.83 1.43 0.00 2.12
2294 4457 3.261951 CGGACGGTGGCGCAATAG 61.262 66.667 10.83 0.00 0.00 1.73
2306 4469 3.458163 TAGAAGGGGCAGCGGACG 61.458 66.667 0.00 0.00 0.00 4.79
2307 4470 2.187163 GTAGAAGGGGCAGCGGAC 59.813 66.667 0.00 0.00 0.00 4.79
2308 4471 2.284331 TGTAGAAGGGGCAGCGGA 60.284 61.111 0.00 0.00 0.00 5.54
2309 4472 2.187946 CTGTAGAAGGGGCAGCGG 59.812 66.667 0.00 0.00 0.00 5.52
2310 4473 2.187946 CCTGTAGAAGGGGCAGCG 59.812 66.667 0.00 0.00 43.15 5.18
2322 4485 1.441729 GCATGCTCTACGGCCTGTA 59.558 57.895 11.37 4.13 32.00 2.74
2323 4486 2.187946 GCATGCTCTACGGCCTGT 59.812 61.111 11.37 2.95 32.00 4.00
2324 4487 2.590007 GGCATGCTCTACGGCCTG 60.590 66.667 18.92 0.00 43.09 4.85
2325 4488 4.227134 CGGCATGCTCTACGGCCT 62.227 66.667 18.92 0.00 44.23 5.19
2326 4489 3.733344 TTCGGCATGCTCTACGGCC 62.733 63.158 18.92 0.00 42.98 6.13
2327 4490 2.202878 TTCGGCATGCTCTACGGC 60.203 61.111 18.92 0.00 0.00 5.68
2328 4491 1.592669 CCTTCGGCATGCTCTACGG 60.593 63.158 18.92 8.30 0.00 4.02
2329 4492 4.018609 CCTTCGGCATGCTCTACG 57.981 61.111 18.92 12.71 0.00 3.51
2339 4502 4.090057 GACAACAGCGCCTTCGGC 62.090 66.667 2.29 0.00 46.75 5.54
2340 4503 3.777925 CGACAACAGCGCCTTCGG 61.778 66.667 2.29 0.00 35.95 4.30
2348 4511 4.077188 GACGGCAGCGACAACAGC 62.077 66.667 0.00 0.00 0.00 4.40
2349 4512 3.767230 CGACGGCAGCGACAACAG 61.767 66.667 0.00 0.00 0.00 3.16
2350 4513 4.578898 ACGACGGCAGCGACAACA 62.579 61.111 0.00 0.00 0.00 3.33
2351 4514 3.764049 GACGACGGCAGCGACAAC 61.764 66.667 0.00 0.00 0.00 3.32
2357 4520 4.500116 GAGGAGGACGACGGCAGC 62.500 72.222 1.63 0.00 0.00 5.25
2358 4521 3.827898 GGAGGAGGACGACGGCAG 61.828 72.222 1.63 0.00 0.00 4.85
2359 4522 3.881019 AAGGAGGAGGACGACGGCA 62.881 63.158 1.63 0.00 0.00 5.69
2360 4523 3.066233 GAAGGAGGAGGACGACGGC 62.066 68.421 0.00 0.00 0.00 5.68
2361 4524 0.966370 AAGAAGGAGGAGGACGACGG 60.966 60.000 0.00 0.00 0.00 4.79
2362 4525 0.452585 GAAGAAGGAGGAGGACGACG 59.547 60.000 0.00 0.00 0.00 5.12
2363 4526 1.202817 GTGAAGAAGGAGGAGGACGAC 59.797 57.143 0.00 0.00 0.00 4.34
2364 4527 1.546961 GTGAAGAAGGAGGAGGACGA 58.453 55.000 0.00 0.00 0.00 4.20
2365 4528 0.171455 CGTGAAGAAGGAGGAGGACG 59.829 60.000 0.00 0.00 0.00 4.79
2366 4529 0.108567 GCGTGAAGAAGGAGGAGGAC 60.109 60.000 0.00 0.00 0.00 3.85
2367 4530 1.258445 GGCGTGAAGAAGGAGGAGGA 61.258 60.000 0.00 0.00 0.00 3.71
2368 4531 1.219393 GGCGTGAAGAAGGAGGAGG 59.781 63.158 0.00 0.00 0.00 4.30
2369 4532 1.153745 CGGCGTGAAGAAGGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
2370 4533 1.874345 GACGGCGTGAAGAAGGAGGA 61.874 60.000 21.19 0.00 0.00 3.71
2371 4534 1.446272 GACGGCGTGAAGAAGGAGG 60.446 63.158 21.19 0.00 0.00 4.30
2372 4535 1.801913 CGACGGCGTGAAGAAGGAG 60.802 63.158 21.19 0.00 0.00 3.69
2373 4536 2.257371 CGACGGCGTGAAGAAGGA 59.743 61.111 21.19 0.00 0.00 3.36
2374 4537 3.479269 GCGACGGCGTGAAGAAGG 61.479 66.667 21.19 0.00 40.36 3.46
2375 4538 3.479269 GGCGACGGCGTGAAGAAG 61.479 66.667 21.19 2.40 41.24 2.85
2391 4554 3.885521 GTAGGAGGACGACGGCGG 61.886 72.222 18.49 0.00 43.17 6.13
2392 4555 2.320339 GAAGTAGGAGGACGACGGCG 62.320 65.000 10.39 10.39 44.79 6.46
2393 4556 1.031029 AGAAGTAGGAGGACGACGGC 61.031 60.000 0.00 0.00 0.00 5.68
2394 4557 1.401199 GAAGAAGTAGGAGGACGACGG 59.599 57.143 0.00 0.00 0.00 4.79
2395 4558 2.082231 TGAAGAAGTAGGAGGACGACG 58.918 52.381 0.00 0.00 0.00 5.12
2396 4559 2.159544 CGTGAAGAAGTAGGAGGACGAC 60.160 54.545 0.00 0.00 0.00 4.34
2397 4560 2.082231 CGTGAAGAAGTAGGAGGACGA 58.918 52.381 0.00 0.00 0.00 4.20
2398 4561 1.467713 GCGTGAAGAAGTAGGAGGACG 60.468 57.143 0.00 0.00 0.00 4.79
2399 4562 1.135053 GGCGTGAAGAAGTAGGAGGAC 60.135 57.143 0.00 0.00 0.00 3.85
2400 4563 1.183549 GGCGTGAAGAAGTAGGAGGA 58.816 55.000 0.00 0.00 0.00 3.71
2401 4564 0.179134 CGGCGTGAAGAAGTAGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
2402 4565 0.526662 ACGGCGTGAAGAAGTAGGAG 59.473 55.000 13.76 0.00 0.00 3.69
2403 4566 0.524862 GACGGCGTGAAGAAGTAGGA 59.475 55.000 21.19 0.00 0.00 2.94
2404 4567 0.797249 CGACGGCGTGAAGAAGTAGG 60.797 60.000 21.19 0.00 0.00 3.18
2405 4568 1.403972 GCGACGGCGTGAAGAAGTAG 61.404 60.000 21.19 0.00 40.36 2.57
2406 4569 1.443194 GCGACGGCGTGAAGAAGTA 60.443 57.895 21.19 0.00 40.36 2.24
2407 4570 2.733593 GCGACGGCGTGAAGAAGT 60.734 61.111 21.19 0.00 40.36 3.01
2408 4571 3.479269 GGCGACGGCGTGAAGAAG 61.479 66.667 21.19 2.40 41.24 2.85
2420 4583 2.092882 GTGTAGCAAGGACGGCGAC 61.093 63.158 16.62 7.58 37.39 5.19
2421 4584 2.260434 GTGTAGCAAGGACGGCGA 59.740 61.111 16.62 0.00 36.08 5.54
2422 4585 2.048597 TGTGTAGCAAGGACGGCG 60.049 61.111 4.80 4.80 36.08 6.46
2423 4586 2.033194 GGTGTGTAGCAAGGACGGC 61.033 63.158 0.00 0.00 0.00 5.68
2424 4587 0.670546 CAGGTGTGTAGCAAGGACGG 60.671 60.000 0.00 0.00 0.00 4.79
2425 4588 1.291877 GCAGGTGTGTAGCAAGGACG 61.292 60.000 0.00 0.00 0.00 4.79
2426 4589 0.955919 GGCAGGTGTGTAGCAAGGAC 60.956 60.000 0.00 0.00 0.00 3.85
2427 4590 1.374947 GGCAGGTGTGTAGCAAGGA 59.625 57.895 0.00 0.00 0.00 3.36
2428 4591 1.675641 GGGCAGGTGTGTAGCAAGG 60.676 63.158 0.00 0.00 0.00 3.61
2429 4592 0.957395 CAGGGCAGGTGTGTAGCAAG 60.957 60.000 0.00 0.00 0.00 4.01
2430 4593 1.073025 CAGGGCAGGTGTGTAGCAA 59.927 57.895 0.00 0.00 0.00 3.91
2431 4594 2.749682 CAGGGCAGGTGTGTAGCA 59.250 61.111 0.00 0.00 0.00 3.49
2432 4595 2.045926 CCAGGGCAGGTGTGTAGC 60.046 66.667 0.00 0.00 0.00 3.58
2433 4596 2.671070 CCCAGGGCAGGTGTGTAG 59.329 66.667 0.00 0.00 0.00 2.74
2434 4597 2.933287 CCCCAGGGCAGGTGTGTA 60.933 66.667 0.00 0.00 0.00 2.90
2453 4616 2.668550 AAACTCGTCCGCCAAGGC 60.669 61.111 0.00 0.00 40.77 4.35
2454 4617 2.325082 CCAAACTCGTCCGCCAAGG 61.325 63.158 0.00 0.00 42.97 3.61
2455 4618 1.164041 AACCAAACTCGTCCGCCAAG 61.164 55.000 0.00 0.00 0.00 3.61
2456 4619 1.153127 AACCAAACTCGTCCGCCAA 60.153 52.632 0.00 0.00 0.00 4.52
2457 4620 1.890041 CAACCAAACTCGTCCGCCA 60.890 57.895 0.00 0.00 0.00 5.69
2458 4621 2.613506 CCAACCAAACTCGTCCGCC 61.614 63.158 0.00 0.00 0.00 6.13
2459 4622 2.943653 CCAACCAAACTCGTCCGC 59.056 61.111 0.00 0.00 0.00 5.54
2460 4623 2.943653 GCCAACCAAACTCGTCCG 59.056 61.111 0.00 0.00 0.00 4.79
2461 4624 2.613506 CCGCCAACCAAACTCGTCC 61.614 63.158 0.00 0.00 0.00 4.79
2462 4625 2.943653 CCGCCAACCAAACTCGTC 59.056 61.111 0.00 0.00 0.00 4.20
2463 4626 3.284449 GCCGCCAACCAAACTCGT 61.284 61.111 0.00 0.00 0.00 4.18
2464 4627 3.254014 CTGCCGCCAACCAAACTCG 62.254 63.158 0.00 0.00 0.00 4.18
2465 4628 2.193536 ACTGCCGCCAACCAAACTC 61.194 57.895 0.00 0.00 0.00 3.01
2466 4629 2.123897 ACTGCCGCCAACCAAACT 60.124 55.556 0.00 0.00 0.00 2.66
2467 4630 2.027460 CACTGCCGCCAACCAAAC 59.973 61.111 0.00 0.00 0.00 2.93
2468 4631 3.222855 CCACTGCCGCCAACCAAA 61.223 61.111 0.00 0.00 0.00 3.28
2469 4632 4.514585 ACCACTGCCGCCAACCAA 62.515 61.111 0.00 0.00 0.00 3.67
2473 4636 4.972733 ATGCACCACTGCCGCCAA 62.973 61.111 0.00 0.00 43.51 4.52
2477 4640 3.490759 GACGATGCACCACTGCCG 61.491 66.667 0.00 0.00 43.51 5.69
2478 4641 3.490759 CGACGATGCACCACTGCC 61.491 66.667 0.00 0.00 43.51 4.85
2479 4642 2.730672 GACGACGATGCACCACTGC 61.731 63.158 0.00 0.00 44.52 4.40
2480 4643 1.372872 TGACGACGATGCACCACTG 60.373 57.895 0.00 0.00 0.00 3.66
2481 4644 1.372997 GTGACGACGATGCACCACT 60.373 57.895 0.00 0.00 0.00 4.00
2482 4645 1.372997 AGTGACGACGATGCACCAC 60.373 57.895 0.00 0.00 33.14 4.16
2483 4646 3.047735 AGTGACGACGATGCACCA 58.952 55.556 0.00 0.00 33.14 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.