>input_sequence_78186
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------------ATGTCCTTGTGCTCGGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGCCCGCCGCCT
GCCGGCGCCCCCGTCGTGCTTCCTGCTTAGGCGCCACGTGACCTTCGCCCCGTCGAACACGTCGACGACCGCCGTGCCGG
GGCGCAGGGCGAGCAGGACGTGCTCCGCACCAGCCCCGCGAGGCAGGCTGGCCTTCATCAGCGGCACGAACGGTGCCGCG
GCGAGGAGCGTGGAAACGTACGCCTTGGCCACCAAGAAGACACGGTTGTACAGGGTGCCGTCGAACTCCTCGATGAGCAC
GGCGTGGCGCCGGGCGGAGGCTGGCGGCAGGAGGAGCAACGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCC
GGCGCAGCAGCATGGCCGCGCCCAGCACGGAAGTTGCCGTCGTGACGGCGCTCTTGTACCGTTCCAGTGCTCTGCTGTTC
GGGGATGTCATGGCCATGGTCGGCTCCAACTGA-----------------------------------------------
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>chr3B_1_TraesCS3B01G260100
TCTAGCCGGTCTTTGTGGTTGGTGGTGAAGATGAGGATCCGCTCATGGCCGCTGCTGGACCAGAGGCCGTCCACCATGTT
GAGCAGCCCGGACAGAGTGACCTGGCAAGGCAACGCACAGCTTAGTTAATAGGAGTAGGTGACAATCGATTTGGAAACCA
CAGGAAATGAAGTGGCAACTGCTCTTGTTGGACAAACAACAGTAGCACGGCAACGACTATAGAGTTGTCGCCTGTACAGT
GACCCAGATCAGTGACTTGCTGGTACTTGAAGCAAACCAAATCAGTGCTGTCGTTTTCGTGTTCAGTGAGGGTGCGATAC
ACAGTCACCCAGAGTT----------------------------------------------------------------
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-------------------------------------------------------------------------TTGTTTG
ATTGTTTCAATGTCGGAGTACAGAGTAGTACTACTACTGGCAAGAATCGATTCAAGAAAAA-------------------
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----------------------------------------------------------------------GAAAATAGTA
CT-----GGTAAGAATA---------------------------------------------------------------
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-----------------------------------------GTCTAAAGGACTAAAGCAGTTTGTTCGTCGTCCATTGCA
ACTTG--------------------------------CAACATGAGTTGGATTA--GTACTA---AAACTAACCTTGTGA
TTCTTGGAAGCAGGGCTGCCCCCGTCGGAGCTTCCCGTCGCCTCTCTCCGTGGCGCCGTCGCCATGGCGCAGTCGACATC
TTCGACCAACAATATGGACCTGTTCTTCATCCGAATCAGCAGTTTCCTCAGCTCGGTGTTGGACCTGACGCCGCCGACGT
CGAGGTCATACACGTCGAAATGGAGGTGGTTGGAGATCGCGGCGACCAGGCTGGACTTGCCGGTGCCGGGCGGGCCGTGG
ACCAGGTAGCCCCTCTTCCACGCCCTCCCCGTCTGCCGGTAGTACTCCTTCCGGGTCAAGAACCTGTCCAGGTCGTCCAC
CACAGCCTGCCGCAGCGCGTCGTCCATGGCCACCGTCGCGAACGTCGAGGCGTTGCGGAGCCTCACTGTCCGCCACTTGC
CCCACTCGTTGCTGTACAGCTTGGTCTGCCTCTGCTCCTGGGACATGGCCTCCACGCGGGCCATGACGGCCGGCAGGTAG
GAGCCGAGCACCATGTCCTTGTGCTCGGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGCCCGCCGCCT
GCCGGCGCCCCCGTCGTGCTTCCTGCTTAGGCGCCACGTGACCTTCGCCCCGTCGAACACGTCGACGACCGCCGTGCCGG
GGCGCAGGGCGAGCAGGACGTGCTCCGCACCAGCCCCGCGAGGCAGGCTGGCCTTCATCAGCGGCACGAACGGTGCCGCG
GCGAGGAGCGTGGAAACGTACGCCTTGGCCACCAAGAAGACACGGTTGTACAGGGTGCCGTCGAACTCCTCGATGAGCAC
GGCGTGGCGCCGGGCGGAGGCTGGCGGCAGGAGGAGCAACGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCC
GGCGCAGCAGCATGGCCGCGCCCAGCACGGAAGTTGCCGTCGTGACGGCGCTCTTGTACCGTTCCAGTGCTCTGCTGTTC
GGGGATGTCATGGCCATGGTCGGCTCCAACTGACGCTGTAGCAGTGGGGGTTTGCTTAAGGTTTCGATCTTCTAATCAGG
TGCTTGAGTTGGTTTCTATGGAGGAGTCGTG-------------------------AAAAACGCAAGGTCGGTTGGAATG
GGGATTGATGATTGACCATTCGC----TGTGATCGGTGTTTGCAACTTCACAAAGGAGATTAGTAGGTTCCACGTGGAGA
CCACGGATGCGACCCCTTAACCAGGTGACTGGTTTCTTCGAAACTTCAATCGACCGCCCCACACCAC-GGCGTCAAAAGT
GGGATCCGGCTTGCCTGCTCCCTCCTCATGCTTTCATTCGTGTTCCCACTTCATTCTACGGCTGTCTTTTTTTTCTAATC
TAATCATTTCCCCCCATGATTTTAAGAGGGTGAGACGGTTCTTATTTTGTTCCAATCAAATCAAGCCACGTACGCGGGAG
CACGGATGGACACACGCGGGAGGAGCAGGCAAGTCTCGTCCATCAAGGCTTTGTTGGGCCACCAATTGAGCACGCCCTCG
TGGCATTTTTTTCATGCACAGACGACTCCCAAGGCGACTAGGTTAGAGCGTCTCCAGCCGTTCGCCTCCCTAGGGCTTGA
AATAGAGCCGCCTGGGGGCGCTCCCTGTCGGCGAAATTATCGGCATGGGGCGATCGGTTTCCCAACCGCCGCCCCAAGCT
CACCCCAGCCGACGTTTTTTGAAAAATAAACTCGGTCAAAATTCGGCCAAACACGACACATATTCGGTCAAACTAGGCGA
TTTCATTGATATTTGTACATAAAAACTTAAAAACATATTTAAAAACATAACTAAAACTATTGCGCCACCGTCCGCTGCCC
CTTCTACAGGCCGTAGAGCATGCCGAAGGCGCTGTTGTCGCTGCCGTCGTCCTCCTCCTTCTTCACGCCGTCGCCGCCGT
CGTCCTCCTACTTCTTCACGCCGTCGCCGTCCTTGCTACACACCTGCCCTGGGGCGCCTTGGCGGACGAGTTTGGTTGGC
GGCAGTGGTGCATCGTCGTCACT
>chr3A_1
TCTAGCCTGTCCTTGTGGTTGGTGGTGAAGATGAGGATCCGCTCATGGCCGCTGCTGGACCAAAGGCCGTCCACCATGTT
GAGCAGCCCCGACAGAGTGACCTGGCAAGGCAACGCACAGCTTAGTTGGTAGGAGTAGGTGACAACCGATTTGGAAACCA
CAGGAAATGAAGCGGCAACTGCTCTTGTTGGACAAACAAGAGTAGCACGGCAACGATTATAGAGTTGTTGCCTATACAGT
GACCCAGATCAGTGACTTGCTGGTACTTGAAGCAAACTAAATCAGTGCTGTCGTTTTCGTGTTTGGTGAGGGTGCGATCA
GGGCCGGTCCTGAGATTTCGGGGGCCCGGGGCGAAGTCAAGACTTGGGGCCTTTTTAATATTGGTTATCAGTTTTCATGG
AAAATCACATGGGGGGTGTGGCATAGGGTTTTTTATAGATAGCGAATTGGAGACATACCTTCTCTAGTTTGCGCGATCTG
TTCTCGGTGATGCATGGCAGAGTGGGCCTAGCAATGGGGCGTCTCCGTCTAGGGTGCACATGACATCAAGCGGTAGTGAC
ACCATCACAAGTAGGGCGCACAAGAGATCAATCTCAAGGGTGAACTGTGCTAGGAAGGCAATGTTGCTGCATGGTGGTGC
TGTGTGACAAATAGTTCAGACATGGACGATTGCTTAACAGTATGAACATTAGTGCTGCACATATGTAAATTGGTTCACGA
AATGCCATGTCAAAGGAACTATTCAGATTTAGTACTCTACAAAAAAACAAGATTTAGAACTCAAGGTTTAGGCGATGAAA
GATTTTCAACAGTTGCATCAATTTATTTTGTTTTGTAGTATAGGACTCAATTTGTATCTTGGACCACGATTACCTTAATC
TTTACAAGAAAATGTTGATGAGCTGAAAGTGCAGATCAAGAAACCTTATCATTTTATGTCCAGGAGTCTAATTAATAAAA
TCCAAAATTGCCAATGGGTATACAACACGGTTCTTCACTAGAAAATATTCTGTGAATCCGGATGGTGCTTTTCTTGTTTT
TCATTATTAGTACATGGGAACAAAGGTTTTCCTTTGAATCAATTGTATATGACAACAAAGTAGTCAAAAGAATACATGCT
AGGTAAAGAAAGAACAACCACAGATATTTGACAAACCGAGATTGATTTTGTTCAGGATCCATCGAGCAGAACTTCTGGGA
GAGAACTGGCGCGGTGTTACTTTTGATTGCTAGATCTTGTGTTCTTGGAGAGTAAGGAGTAGCCGGCGTATTGGAGAAGA
ACTAGAAAACCTAGATACATAATTTGGAAAACTGGGGAGAGAAAGATCGAGCGTTTGTTTTCTGTGCGAGAAACCTCGGC
GGCTATACGATGCATCAGATCGCTAACCTAGACGCTTTCCTTTTCCCGAGTTAACCAGGCCGATGGACATGAAAATAGTA
CTGGTCAGGTAAGAATA---------------------------------------------------------------
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-----------------------------------------GCCTAAAGGACTAAAGCAGTTTGTTCGTCGTCCATTGCA
ACTTG--------------------------------CAACATGAGTTGGATTA--GTACTACTAAAACTAACCTTGTGA
TTCTTGGAAACAGGGTTGCCCCCGTCGGAGCTTCCCGTCGCTTCCCTCCGTGGCGCCGTCGCCAGGGCGCAATCGACATC
TTCGACCAACAATATGGACCTGTTCTTCATCCGAATCAGCAGTTTCCTCAGCTCGGTGTTGGACCTGACGCTGCCGACGT
CGAGATCATACACGTCGAAATGGAGGTGGTTGGAGATCGCGGCGACCAAGCTGGACTTGCCGGTGCCGGGCGGGCCGTGG
ATCAGGTAGCCCCTCTTCCACGCCCTCCCCGTCTGCCGGTAGTACTCCTTCCGGGTCAAGAACCTGTCCAGGTCGTCTAC
CACGGCCTGCCGCAGCGCGTCGTCCATGGCCACCGTCGCGAACGTCGAGGCGTTGCGGAGCCTCACGGTCCGCCACTTGC
CCCACTCGTTGCTGTACAGCTTGGTCTGCCTCTGCTCCTGGGACATGGCCTCCACGCGGGCCATGACGGCCGGCAGGTAG
GAGCCGAGCACCATGTCCTTGTGCTCCGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGTCCGCCGCCT
GCCGGCGCCCCCATCGTGCTTCCTGCTTAGGCGCCACGTGACCTTTGCCCCGTCGAACACGTCGACGACCGCCGTGCCGG
GGCGGAGGGCGAGCAGGACGTGCTCCGCACCGGCCCCGCGCGGCAGGCTGGCCTTCATCAGCGGCACGGACGGTGCCGCG
GCGAGGAGCGTGGAAACGTACGCCTTGGCCGCCAAGAAGACGCGGTTGTGCAGGGCGCCGTCGAACTCCTCGATGAGCAC
GGCGTGGCGCCGGGCGGAGGCTGGCGGCAGGAGGAGCAGCGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCC
GGCGCAGCAGCATGGCCGCGCCCAGCACGGAAGTTGCCGTCGTGACGGCGCTCTTGTACCGTTCCAGCGCTCTGCTGTTG
GGGGATGTCATGGCCATGGCCGGCTCCAACTAACGCTGTAGCAGTGGGGGTTTGCTTAAGGTCTCGATCTTCTAATCAGG
TGCTTGAGTTGGTTCTGTGGAGCAACTGAGGAGAGCCTTTAATTGGAGCCGTAAAAAAAAATGCAAGGTCGGTTGCAACG
GGGATTGATGATTGACCATTCGCTGTGTGTGATTGGTGTTTGCAACTTCACAAAGGAGATTAGTAGGTTCCACGTGGAGA
CCAGGGATGCGACCCGTTAACCTAGTGAGTGGTTTCTTCGAAACTTCAATCGACCGCCCCACACCGAGGGCGTCAAAAGT
G-------------------------------------------------------------------------------
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>chr3D_1
TCGAGCCGGTCCCTGTGGTTGGTGGTGAAGATGAGGATCCGCTCATGGCCGCTGCTGGACCAGAGGCCGTCCACCATGTT
GAGCAGCCCGGACAGAGTGACCTGGCAAGGCAACGCCCAGCTTAGTTGGTAGGAGTAGGTGACAATCGATTTGGAAACCA
CATGAAATGAAGTGGCAACTGCTCTTGTTGGACAAACAACAGTAGCACGGCAACGACTATAGAGTGGTTGCCTATACAGT
GACCCAGATCAGTGACTTGCTGGTACTTGAAGCAAACCAAACCAGTGCTGTCGTTTTCGTGTTCAGTGAGGGTGCGATAC
A--GTCACCCAGAGCT----------------------------------------------------------------
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-------------------------------------------------------------------------TTGTTTG
ATTGTTTCAGTGCTGGAGTACAGAGTTCTGCC------GGCAAGAATCGTTTCTAGAAAAA-------------------
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----------------------------------------------------------------------GAAAATACTA
CT-----AGTAATAAGAATAGTCTAACGAAAACACTAACGCCCACACGTGTGACGTTAGACAACTCACCCACACGCCTCC
ATCATCGTCCAACGCCTTTTGCACGAATTTTGGCATGAAAAGGCTGATTTTGTGTGCCACGTAGGACAACTCGTGTGTGT
GGGTGTGAGGGAGTTCGCCCGCACGCCGGTTTCTCTCCGCGGTCAATGTTTCGCCAGTCGGGCGTGCGATGAAACTGCTG
TCGCGCCCGCACGCCGCGCACCACTTCTGTTCCCCATCTCCTACGACTGCCCATTCTCCCACTCTCCCACACCCAAGCTG
TCATTTGCCATGTTTTTGAATGGTACATGGCAACTGCCCTATTTGTGAGCATGAGCAGATGGCAACTCTCTTTTTACCCG
AAACATGTTATTGTTGCCACGTCTGTTTGTAGCGCTACATGGCAACTGTCTAGTGTTAGTAGGTGGCAACTCCTAAAGAT
ACCACCATCGCCCACATGCCCGTCTCCTCTCCCACACACCAAAAGCTATCAGTTGCCATGTTTTTTGCAGGGTACATGGC
AACTGCCCTAGCGTGCTTGTAAGCAGATGACAACTCTTTTTTTACCGAAATATGTTTTTTAGTGCTACATGGCAACTGTC
CAGTGTTAGTAGGTGGCAACTCCTAAAATTTTTCAAATCATGGTAACTGTAGTAGACCAGACCATACATGGCAACAGCTG
CAGTTGCCAAAAAGGCATCCGGCACTTGACCTAAGATGGCAACTGCAGTTGAGCAACCATGGCAACTGTAGTTCAGCAAC
ATGGCAACTGCAGTTCAGCAACATGGCAACATGGCAACCGAAGAGGTCCGGACCATGGCAATCGCGGCGGACGCGTGGTT
ACTGACACGCGGGGTGTGTGGCTCGCAGGCGGGGAGGGGCGACGGCCGAGACGGGTCGTGCGGGCCGCGCGCTCGCTCGC
CCGGACGTGCGGGCTGTGGCTGCGCGCGCCCGTACGCGATCGTGCGGGCGGGGACGTCTCCGTGCCACACAGGACGTGCG
GCACAACCACCTGATACACCACACGTGTGGCAGTTATCGGCGTCCAAAGGACTAAAGCAGTTTGTTCGTCGTCCATTGCA
ACTTGCAACATGAGTTGGATTTGTCCATTACAACTTGCAACATGAGTTGGATTATAGTACTACTAAAACTAACCTTGTGA
TTCTTGGAAGCAGGGCTGCCCCCGTCGGAGCTTCCCGTCGCTTCCCTCCGTGGTGCCGTCGCCACGGCGCAATCGACATC
TTCGACCAACAGTATGGACCTGTTCTTCATCCGAATCAGCAGTTTCCTAAGCTCGGTGTTGGACCTGACGCTGCCGACGT
CGAGATCATACACGTCGAAATGGAGGTGGTTGGAGATCGCGGCGACCAGACTGGACTTGCCGGTGCCGGGCGGGCCGTGG
ATCAGGTAGCCCCTCTTCCACGCCCTCCCCGTCTGCCGGTAGTACTCCTTCCGGGTCAAGAACCTGTCCAGGTCGTCCAC
CACGGCCTGCCGCAGCGCGGCGTCCATGGCCACCGTCGCGAACGTCGAGGCGTTGCGGAGCCTCACGGTCCGCCACTTGC
CCCACTCGTTGCTGTACAGCTTGGTCTGCCTCTGCTCCTGGGACATGGCCTCCACGCGGGCCATGACGGCCGGCAGGTAG
GAGCCGAGCACCATGTCCTTGTGCTCCGCGTCGAAGCTGAGCTTGAACACCTCGCGCGCGTCCTCCGTGGTCCGCCGCCT
GCCGGCGCCCCCGTCGTGCTTCCTGCTCAGGCGCCACGTGACCTTTGCCCCGTCGAACACGTCGACGACCGCCGTGCCGG
GGCGCAGGGCGAGCAGGACGTGCTCCGCATCGGCCCCGCGAGGCAGGCTGGCCTTCATCAGCGGCACGGACGGTGCCGCG
GCGAGCAGCGTGGAAACGTACGCCTTGGCCGCCAAGAAGACGCGGTTGTACAGGGCGCCGTCGAACTCCTCGATGAGCAC
GGCGTGGCGCCGGGCGGAGGCTGGCGGCAGGAGGAGCAGCGCGCCGAGGGCCGTGCCTGGGAGGACGTCGGCGAGCACCC
GGCGCAGCAGCATGGCCGCGCCCAGCACGGAAGTTGCCGTCGTTACGGCGCTCTTGTACCGTTCGAGCGCTCTGCTGCTC
GGGGATGTCATGGCCATGGCCGGCTCCAACTCACGCTGTAGCGGTGGGGGTTTGCTTAAGGTTTCGATCTTCTAATCAGG
TGCTTGAGTTGGTTCTGTGGAGCAACTGAGGAGATCCTCTAATTAGAGTCGGAAAAAAAAAATCGAGGTCGGTTCTAATG
GGGATTGATGATTGACCATTCGCTGTGATCGGTGTC----TGCAACTTCACAAAGGAGATTAGTAGGTTCCAGGTGGAGA
CCACGGATGCGACCCCTTAACCTAGTGACTGGTTTCTTCGAAACTTCAACCGACCGCCCCACACCAAGGGCGTCAAAAGT
G-------------------------------------------------------------------------------
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>SNPs
-----------S--------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
--------------------------------------------------------------------S----S------
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-SS-----------S-----------------------------------------------------------------
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---------S--SS------------SS-S-SSS-SSS-----------S------------------------------
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-----------------------------------------S--S-------------------S------S--------
-----------------------------------------------------------------------S--------
----S---------------------------------------------------------------------------
-S------------------------------------------------------------------------------
---S--------------------------------------------------------------S-------------
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--------------------------S-------------------------------------------S---------
---------------------------------------------S----------------------------------
-------------------------------S------------------------------------S-----------
------------------------------S----------S-------------S------------------------
--------------------------------------S-----------------------------------------
-------------------------------------------------------------------S------------
-------------------S-----------S------------------------------------------------
--------------SSSSS-SSSS-S-SSS-------------------------------S-------------S----
---------------------------------S----------------------------------------------
----------------------SS------------------------------------------S-------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_128
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----------------------------GGCAACGCACAGCTTAGTTA--------------------------------
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>reverse_4193
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--------------------------------GGCGACTAGGTTAGAGCGTC----------------------------
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