Multiple sequence alignment - TraesCS3B01G254100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G254100 chr3B 100.000 3893 0 0 1 3893 409543693 409547585 0.000000e+00 7190
1 TraesCS3B01G254100 chr3B 96.099 282 11 0 3612 3893 129123841 129124122 9.860000e-126 460
2 TraesCS3B01G254100 chr3B 96.099 282 11 0 3612 3893 226156001 226155720 9.860000e-126 460
3 TraesCS3B01G254100 chr3D 96.269 3404 93 13 1 3379 311669178 311665784 0.000000e+00 5552
4 TraesCS3B01G254100 chr3D 90.230 174 6 1 3403 3576 311664719 311664557 2.360000e-52 217
5 TraesCS3B01G254100 chr3D 87.970 133 11 1 242 369 172356570 172356702 6.740000e-33 152
6 TraesCS3B01G254100 chr3A 95.893 3409 96 18 1 3376 420739122 420742519 0.000000e+00 5480
7 TraesCS3B01G254100 chr3A 94.253 174 10 0 3403 3576 420743267 420743440 2.310000e-67 267
8 TraesCS3B01G254100 chr3A 91.270 126 6 2 249 369 169855801 169855926 2.410000e-37 167
9 TraesCS3B01G254100 chr6B 96.454 282 10 0 3612 3893 56478991 56478710 2.120000e-127 466
10 TraesCS3B01G254100 chr6B 96.113 283 9 2 3612 3893 515520506 515520787 9.860000e-126 460
11 TraesCS3B01G254100 chr7B 96.099 282 11 0 3612 3893 145142338 145142057 9.860000e-126 460
12 TraesCS3B01G254100 chr7B 96.099 282 11 0 3612 3893 413500051 413499770 9.860000e-126 460
13 TraesCS3B01G254100 chr5D 96.099 282 11 0 3612 3893 236191853 236192134 9.860000e-126 460
14 TraesCS3B01G254100 chr5D 88.550 131 10 1 251 376 412263451 412263321 1.870000e-33 154
15 TraesCS3B01G254100 chr2B 96.099 282 11 0 3612 3893 486084061 486083780 9.860000e-126 460
16 TraesCS3B01G254100 chr2B 88.148 135 10 2 250 379 572791182 572791049 5.210000e-34 156
17 TraesCS3B01G254100 chr5B 96.099 282 10 1 3612 3893 475814759 475814479 3.540000e-125 459
18 TraesCS3B01G254100 chr7A 91.200 125 6 1 250 369 498590258 498590382 8.650000e-37 165
19 TraesCS3B01G254100 chr7A 86.364 154 11 6 231 376 627236795 627236946 4.030000e-35 159
20 TraesCS3B01G254100 chr6A 90.400 125 7 1 250 369 352665670 352665794 4.030000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G254100 chr3B 409543693 409547585 3892 False 7190.0 7190 100.0000 1 3893 1 chr3B.!!$F2 3892
1 TraesCS3B01G254100 chr3D 311664557 311669178 4621 True 2884.5 5552 93.2495 1 3576 2 chr3D.!!$R1 3575
2 TraesCS3B01G254100 chr3A 420739122 420743440 4318 False 2873.5 5480 95.0730 1 3576 2 chr3A.!!$F2 3575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 615 2.158608 CCTGGTTGTGGTCTCCTTTTCT 60.159 50.000 0.00 0.0 0.00 2.52 F
1290 1297 0.167470 CAGCTTGTGCAATGTCTCCG 59.833 55.000 0.00 0.0 42.74 4.63 F
2403 2410 1.401552 TGCGCTATTTCTGATTGCACC 59.598 47.619 9.73 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2304 2311 0.182775 ACACTCCACCACCCTCAAAC 59.817 55.0 0.0 0.0 0.0 2.93 R
2868 2875 0.612744 TCCACGCCATCATGACAGAA 59.387 50.0 0.0 0.0 0.0 3.02 R
3464 4685 0.031994 AGGTTGCGTTTGACATTGGC 59.968 50.0 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 2.728013 ACCTGGCCATCTATAGGGTCTA 59.272 50.000 5.51 0.00 30.62 2.59
199 200 9.423061 GGCACTTACAGATCAACAAATAAAAAT 57.577 29.630 0.00 0.00 0.00 1.82
263 264 8.168725 TGTTATAATCTTATACTCCCTCCGTCT 58.831 37.037 0.00 0.00 0.00 4.18
460 466 8.126700 AGTCTGTTAAATTTACAAGTTGAACGG 58.873 33.333 10.54 6.83 0.00 4.44
487 493 8.514330 TTAGCATTAGGGTAAACCAACATTAG 57.486 34.615 0.81 0.00 43.89 1.73
522 528 7.730364 ATTATAAAGGCACCGACAATTCTAG 57.270 36.000 0.00 0.00 0.00 2.43
609 615 2.158608 CCTGGTTGTGGTCTCCTTTTCT 60.159 50.000 0.00 0.00 0.00 2.52
616 622 4.199310 TGTGGTCTCCTTTTCTCTTTGTG 58.801 43.478 0.00 0.00 0.00 3.33
714 720 6.524101 AGTTGAGACTTCCTAGATTCTCAC 57.476 41.667 10.36 7.56 43.23 3.51
722 728 8.010105 AGACTTCCTAGATTCTCACCTCATATT 58.990 37.037 0.00 0.00 0.00 1.28
749 756 6.737720 TTACTAATCAGCAGGATCATCACT 57.262 37.500 0.00 0.00 34.28 3.41
1058 1065 5.095691 AGCATCAACTCGTTAAACACTTG 57.904 39.130 0.00 0.00 0.00 3.16
1071 1078 6.371389 GTTAAACACTTGTCATTACCAGAGC 58.629 40.000 0.00 0.00 0.00 4.09
1100 1107 4.056740 CAACATACTGCTCAGCATAGAGG 58.943 47.826 0.00 0.00 38.13 3.69
1290 1297 0.167470 CAGCTTGTGCAATGTCTCCG 59.833 55.000 0.00 0.00 42.74 4.63
1591 1598 1.476833 GGGGTTTTGAGCACTCTGTGA 60.477 52.381 1.52 0.00 35.23 3.58
1693 1700 2.120232 CGCCAGTCATATCGTCAACTC 58.880 52.381 0.00 0.00 0.00 3.01
1842 1849 1.614711 CATAGCCCATGGTGGTGGT 59.385 57.895 11.73 3.19 37.57 4.16
1926 1933 3.934962 GGCGGAGGGAGGAGATGC 61.935 72.222 0.00 0.00 0.00 3.91
1986 1993 1.985662 CCACTGCATTGCCCATGGT 60.986 57.895 11.73 0.00 32.81 3.55
2082 2089 1.754226 GGTGGAAAAAGGTGTCAGCAA 59.246 47.619 4.59 0.00 0.00 3.91
2328 2335 4.660938 GGTGGTGGAGTGTGCCCC 62.661 72.222 0.00 0.00 0.00 5.80
2334 2341 2.360475 GGAGTGTGCCCCAAGAGC 60.360 66.667 0.00 0.00 0.00 4.09
2403 2410 1.401552 TGCGCTATTTCTGATTGCACC 59.598 47.619 9.73 0.00 0.00 5.01
2868 2875 2.338015 TAACTCGGAGAACGGCGCT 61.338 57.895 12.86 0.00 44.45 5.92
2990 3008 6.016276 ACATTTCACCAATTGTTGTCCTAGTC 60.016 38.462 4.43 0.00 0.00 2.59
3002 3020 2.960384 TGTCCTAGTCGTTTGGAAGTGA 59.040 45.455 0.00 0.00 32.33 3.41
3005 3023 5.105877 TGTCCTAGTCGTTTGGAAGTGATAG 60.106 44.000 0.00 0.00 32.33 2.08
3006 3024 4.401519 TCCTAGTCGTTTGGAAGTGATAGG 59.598 45.833 0.00 0.00 0.00 2.57
3053 3071 0.543410 TAAGGGAGAGCGTTGTGGGA 60.543 55.000 0.00 0.00 0.00 4.37
3122 3140 7.093992 GCCCTTGCTTTGTGTTTATTACAATA 58.906 34.615 0.00 0.00 37.81 1.90
3149 3167 5.921962 TGTAGTCTGATACTGCTTCACAT 57.078 39.130 0.00 0.00 41.10 3.21
3172 3190 5.860941 TTCCTACTTGGATGTCATCTCTC 57.139 43.478 12.54 0.00 45.68 3.20
3176 3194 1.137675 CTTGGATGTCATCTCTCCGCA 59.862 52.381 12.54 0.00 31.36 5.69
3190 3208 0.951558 TCCGCAGTTTGCTTTCCTTC 59.048 50.000 0.00 0.00 42.25 3.46
3214 3232 4.002982 TGTTTCTGGTAATAGTGCAGCAG 58.997 43.478 0.00 0.00 40.74 4.24
3221 3239 4.899457 TGGTAATAGTGCAGCAGGTAGTAT 59.101 41.667 0.00 0.00 30.03 2.12
3222 3240 6.072649 TGGTAATAGTGCAGCAGGTAGTATA 58.927 40.000 0.00 0.00 28.90 1.47
3248 3275 1.063166 GGCGGGTAGAAGTACGTCG 59.937 63.158 3.05 0.00 32.79 5.12
3250 3277 0.247854 GCGGGTAGAAGTACGTCGTC 60.248 60.000 0.00 1.18 32.46 4.20
3339 3366 2.795175 TCGGATAATTCTCTGTCGCC 57.205 50.000 0.09 0.00 0.00 5.54
3345 3379 4.212214 GGATAATTCTCTGTCGCCATGAAC 59.788 45.833 0.00 0.00 0.00 3.18
3355 3389 0.794229 CGCCATGAACGTTGATGCAC 60.794 55.000 20.63 13.86 0.00 4.57
3358 3393 2.521996 CCATGAACGTTGATGCACATG 58.478 47.619 20.63 17.48 36.10 3.21
3376 3411 5.582269 GCACATGTCATTGCTAGAAACTCTA 59.418 40.000 0.00 0.00 35.74 2.43
3379 3414 8.759641 CACATGTCATTGCTAGAAACTCTATAC 58.240 37.037 0.00 0.00 0.00 1.47
3380 3415 7.928706 ACATGTCATTGCTAGAAACTCTATACC 59.071 37.037 0.00 0.00 0.00 2.73
3381 3416 7.418337 TGTCATTGCTAGAAACTCTATACCA 57.582 36.000 0.00 0.00 0.00 3.25
3382 3417 7.847096 TGTCATTGCTAGAAACTCTATACCAA 58.153 34.615 0.00 0.00 0.00 3.67
3383 3418 7.764443 TGTCATTGCTAGAAACTCTATACCAAC 59.236 37.037 0.00 0.00 0.00 3.77
3384 3419 7.224949 GTCATTGCTAGAAACTCTATACCAACC 59.775 40.741 0.00 0.00 0.00 3.77
3385 3420 6.614694 TTGCTAGAAACTCTATACCAACCA 57.385 37.500 0.00 0.00 0.00 3.67
3386 3421 6.614694 TGCTAGAAACTCTATACCAACCAA 57.385 37.500 0.00 0.00 0.00 3.67
3388 3423 7.455058 TGCTAGAAACTCTATACCAACCAAAA 58.545 34.615 0.00 0.00 0.00 2.44
3391 3426 7.506328 AGAAACTCTATACCAACCAAAACAC 57.494 36.000 0.00 0.00 0.00 3.32
3392 3427 6.489022 AGAAACTCTATACCAACCAAAACACC 59.511 38.462 0.00 0.00 0.00 4.16
3396 3431 4.828387 TCTATACCAACCAAAACACCAACC 59.172 41.667 0.00 0.00 0.00 3.77
3397 3432 1.645710 ACCAACCAAAACACCAACCA 58.354 45.000 0.00 0.00 0.00 3.67
3398 3433 1.978580 ACCAACCAAAACACCAACCAA 59.021 42.857 0.00 0.00 0.00 3.67
3400 3435 3.006247 CCAACCAAAACACCAACCAAAG 58.994 45.455 0.00 0.00 0.00 2.77
3401 3436 3.307059 CCAACCAAAACACCAACCAAAGA 60.307 43.478 0.00 0.00 0.00 2.52
3422 4643 2.192263 GACCCTGGGAATCTGACTTCT 58.808 52.381 22.23 0.00 0.00 2.85
3482 4714 1.274798 CGCCAATGTCAAACGCAACC 61.275 55.000 0.00 0.00 0.00 3.77
3483 4715 0.031994 GCCAATGTCAAACGCAACCT 59.968 50.000 0.00 0.00 0.00 3.50
3484 4716 1.930371 GCCAATGTCAAACGCAACCTC 60.930 52.381 0.00 0.00 0.00 3.85
3485 4717 1.662876 CCAATGTCAAACGCAACCTCG 60.663 52.381 0.00 0.00 0.00 4.63
3486 4718 1.262950 CAATGTCAAACGCAACCTCGA 59.737 47.619 0.00 0.00 0.00 4.04
3487 4719 1.808411 ATGTCAAACGCAACCTCGAT 58.192 45.000 0.00 0.00 0.00 3.59
3488 4720 1.588674 TGTCAAACGCAACCTCGATT 58.411 45.000 0.00 0.00 0.00 3.34
3489 4721 1.262950 TGTCAAACGCAACCTCGATTG 59.737 47.619 0.00 0.00 41.53 2.67
3529 4761 2.096980 CAGCACGCAACATGAATGATCT 59.903 45.455 0.00 0.00 0.00 2.75
3576 4808 5.925509 TGCAGTTAACTCAAGAGTAAAGGT 58.074 37.500 4.77 0.00 41.58 3.50
3577 4809 6.354130 TGCAGTTAACTCAAGAGTAAAGGTT 58.646 36.000 4.77 0.00 41.58 3.50
3578 4810 7.502696 TGCAGTTAACTCAAGAGTAAAGGTTA 58.497 34.615 4.77 0.00 41.58 2.85
3579 4811 7.988599 TGCAGTTAACTCAAGAGTAAAGGTTAA 59.011 33.333 4.77 0.00 41.58 2.01
3580 4812 9.000486 GCAGTTAACTCAAGAGTAAAGGTTAAT 58.000 33.333 4.77 0.00 41.58 1.40
3586 4818 8.494016 ACTCAAGAGTAAAGGTTAATATGCAC 57.506 34.615 0.00 0.00 40.43 4.57
3587 4819 8.100791 ACTCAAGAGTAAAGGTTAATATGCACA 58.899 33.333 0.00 0.00 40.43 4.57
3588 4820 9.113838 CTCAAGAGTAAAGGTTAATATGCACAT 57.886 33.333 0.00 0.00 0.00 3.21
3589 4821 8.892723 TCAAGAGTAAAGGTTAATATGCACATG 58.107 33.333 0.00 0.00 0.00 3.21
3590 4822 8.677300 CAAGAGTAAAGGTTAATATGCACATGT 58.323 33.333 0.00 0.00 0.00 3.21
3591 4823 9.899661 AAGAGTAAAGGTTAATATGCACATGTA 57.100 29.630 0.00 0.00 0.00 2.29
3592 4824 9.547753 AGAGTAAAGGTTAATATGCACATGTAG 57.452 33.333 0.00 0.00 0.00 2.74
3593 4825 8.154649 AGTAAAGGTTAATATGCACATGTAGC 57.845 34.615 0.00 5.65 0.00 3.58
3594 4826 5.673337 AAGGTTAATATGCACATGTAGCG 57.327 39.130 0.00 0.00 33.85 4.26
3595 4827 4.956085 AGGTTAATATGCACATGTAGCGA 58.044 39.130 0.00 0.00 33.85 4.93
3596 4828 4.750098 AGGTTAATATGCACATGTAGCGAC 59.250 41.667 0.00 0.00 33.85 5.19
3597 4829 4.084013 GGTTAATATGCACATGTAGCGACC 60.084 45.833 0.00 4.56 33.85 4.79
3598 4830 2.908688 ATATGCACATGTAGCGACCA 57.091 45.000 0.00 0.00 33.85 4.02
3599 4831 2.223537 TATGCACATGTAGCGACCAG 57.776 50.000 0.00 0.00 33.85 4.00
3600 4832 0.536724 ATGCACATGTAGCGACCAGA 59.463 50.000 0.00 0.00 33.85 3.86
3601 4833 0.536724 TGCACATGTAGCGACCAGAT 59.463 50.000 0.00 0.00 33.85 2.90
3602 4834 1.212616 GCACATGTAGCGACCAGATC 58.787 55.000 0.00 0.00 0.00 2.75
3603 4835 1.202463 GCACATGTAGCGACCAGATCT 60.202 52.381 0.00 0.00 0.00 2.75
3604 4836 2.736978 CACATGTAGCGACCAGATCTC 58.263 52.381 0.00 0.00 0.00 2.75
3605 4837 2.099756 CACATGTAGCGACCAGATCTCA 59.900 50.000 0.00 0.00 0.00 3.27
3606 4838 2.360483 ACATGTAGCGACCAGATCTCAG 59.640 50.000 0.00 0.00 0.00 3.35
3607 4839 2.420058 TGTAGCGACCAGATCTCAGA 57.580 50.000 0.00 0.00 0.00 3.27
3608 4840 2.017782 TGTAGCGACCAGATCTCAGAC 58.982 52.381 0.00 0.00 0.00 3.51
3609 4841 2.017782 GTAGCGACCAGATCTCAGACA 58.982 52.381 0.00 0.00 0.00 3.41
3610 4842 1.102154 AGCGACCAGATCTCAGACAG 58.898 55.000 0.00 0.00 0.00 3.51
3611 4843 0.102120 GCGACCAGATCTCAGACAGG 59.898 60.000 0.00 0.00 0.00 4.00
3612 4844 0.743688 CGACCAGATCTCAGACAGGG 59.256 60.000 0.00 0.00 0.00 4.45
3613 4845 1.683319 CGACCAGATCTCAGACAGGGA 60.683 57.143 0.00 0.00 0.00 4.20
3614 4846 2.676748 GACCAGATCTCAGACAGGGAT 58.323 52.381 0.00 0.00 0.00 3.85
3615 4847 2.627699 GACCAGATCTCAGACAGGGATC 59.372 54.545 0.00 0.00 36.92 3.36
3616 4848 1.612950 CCAGATCTCAGACAGGGATCG 59.387 57.143 2.34 0.00 40.28 3.69
3617 4849 1.612950 CAGATCTCAGACAGGGATCGG 59.387 57.143 2.34 0.00 40.28 4.18
3618 4850 1.216678 AGATCTCAGACAGGGATCGGT 59.783 52.381 2.34 0.00 40.28 4.69
3619 4851 2.443632 AGATCTCAGACAGGGATCGGTA 59.556 50.000 2.34 0.00 40.28 4.02
3620 4852 2.820728 TCTCAGACAGGGATCGGTAA 57.179 50.000 0.00 0.00 0.00 2.85
3621 4853 3.314307 TCTCAGACAGGGATCGGTAAT 57.686 47.619 0.00 0.00 0.00 1.89
3622 4854 2.959030 TCTCAGACAGGGATCGGTAATG 59.041 50.000 0.00 0.00 0.00 1.90
3623 4855 1.412710 TCAGACAGGGATCGGTAATGC 59.587 52.381 0.00 0.00 0.00 3.56
3624 4856 1.414181 CAGACAGGGATCGGTAATGCT 59.586 52.381 0.00 0.00 0.00 3.79
3625 4857 1.414181 AGACAGGGATCGGTAATGCTG 59.586 52.381 0.00 0.00 0.00 4.41
3626 4858 1.412710 GACAGGGATCGGTAATGCTGA 59.587 52.381 0.00 0.00 36.82 4.26
3627 4859 2.037772 GACAGGGATCGGTAATGCTGAT 59.962 50.000 0.00 0.00 45.41 2.90
3628 4860 3.239449 ACAGGGATCGGTAATGCTGATA 58.761 45.455 0.00 0.00 42.93 2.15
3629 4861 3.006967 ACAGGGATCGGTAATGCTGATAC 59.993 47.826 0.00 0.00 42.93 2.24
3630 4862 2.231478 AGGGATCGGTAATGCTGATACG 59.769 50.000 0.00 0.00 43.39 3.06
3631 4863 1.993370 GGATCGGTAATGCTGATACGC 59.007 52.381 0.00 0.00 42.93 4.42
3632 4864 1.649171 GATCGGTAATGCTGATACGCG 59.351 52.381 3.53 3.53 42.93 6.01
3633 4865 0.937699 TCGGTAATGCTGATACGCGC 60.938 55.000 5.73 0.00 0.00 6.86
3634 4866 1.212455 CGGTAATGCTGATACGCGCA 61.212 55.000 5.73 0.00 40.87 6.09
3635 4867 0.508641 GGTAATGCTGATACGCGCAG 59.491 55.000 5.73 6.98 39.82 5.18
3636 4868 1.209128 GTAATGCTGATACGCGCAGT 58.791 50.000 5.73 9.29 39.82 4.40
3637 4869 2.390938 GTAATGCTGATACGCGCAGTA 58.609 47.619 5.73 11.41 39.82 2.74
3638 4870 1.209128 AATGCTGATACGCGCAGTAC 58.791 50.000 5.73 6.62 39.82 2.73
3639 4871 0.385751 ATGCTGATACGCGCAGTACT 59.614 50.000 5.73 0.00 39.82 2.73
3640 4872 0.172578 TGCTGATACGCGCAGTACTT 59.827 50.000 5.73 0.00 38.29 2.24
3641 4873 0.572590 GCTGATACGCGCAGTACTTG 59.427 55.000 5.73 5.77 38.29 3.16
3642 4874 1.797713 GCTGATACGCGCAGTACTTGA 60.798 52.381 5.73 0.00 38.29 3.02
3643 4875 2.526077 CTGATACGCGCAGTACTTGAA 58.474 47.619 5.73 0.00 38.29 2.69
3644 4876 2.526077 TGATACGCGCAGTACTTGAAG 58.474 47.619 5.73 0.00 38.29 3.02
3645 4877 2.162809 TGATACGCGCAGTACTTGAAGA 59.837 45.455 5.73 0.00 38.29 2.87
3646 4878 2.710220 TACGCGCAGTACTTGAAGAA 57.290 45.000 5.73 0.00 0.00 2.52
3647 4879 2.080286 ACGCGCAGTACTTGAAGAAT 57.920 45.000 5.73 0.00 0.00 2.40
3648 4880 2.413837 ACGCGCAGTACTTGAAGAATT 58.586 42.857 5.73 0.00 0.00 2.17
3649 4881 2.806244 ACGCGCAGTACTTGAAGAATTT 59.194 40.909 5.73 0.00 0.00 1.82
3650 4882 3.991773 ACGCGCAGTACTTGAAGAATTTA 59.008 39.130 5.73 0.00 0.00 1.40
3651 4883 4.630069 ACGCGCAGTACTTGAAGAATTTAT 59.370 37.500 5.73 0.00 0.00 1.40
3652 4884 5.808540 ACGCGCAGTACTTGAAGAATTTATA 59.191 36.000 5.73 0.00 0.00 0.98
3653 4885 6.311935 ACGCGCAGTACTTGAAGAATTTATAA 59.688 34.615 5.73 0.00 0.00 0.98
3654 4886 7.011109 ACGCGCAGTACTTGAAGAATTTATAAT 59.989 33.333 5.73 0.00 0.00 1.28
3655 4887 8.484799 CGCGCAGTACTTGAAGAATTTATAATA 58.515 33.333 8.75 0.00 0.00 0.98
3656 4888 9.798885 GCGCAGTACTTGAAGAATTTATAATAG 57.201 33.333 0.30 0.00 0.00 1.73
3679 4911 9.751542 ATAGAGTAGCAATCACACACTTATTAC 57.248 33.333 0.00 0.00 0.00 1.89
3680 4912 7.611770 AGAGTAGCAATCACACACTTATTACA 58.388 34.615 0.00 0.00 0.00 2.41
3681 4913 8.260818 AGAGTAGCAATCACACACTTATTACAT 58.739 33.333 0.00 0.00 0.00 2.29
3682 4914 8.792830 AGTAGCAATCACACACTTATTACATT 57.207 30.769 0.00 0.00 0.00 2.71
3683 4915 8.668353 AGTAGCAATCACACACTTATTACATTG 58.332 33.333 0.00 0.00 0.00 2.82
3684 4916 7.686438 AGCAATCACACACTTATTACATTGA 57.314 32.000 0.00 0.00 0.00 2.57
3685 4917 8.109705 AGCAATCACACACTTATTACATTGAA 57.890 30.769 0.00 0.00 0.00 2.69
3686 4918 8.742777 AGCAATCACACACTTATTACATTGAAT 58.257 29.630 0.00 0.00 0.00 2.57
3687 4919 8.800972 GCAATCACACACTTATTACATTGAATG 58.199 33.333 3.16 3.16 0.00 2.67
3688 4920 9.844790 CAATCACACACTTATTACATTGAATGT 57.155 29.630 15.80 15.80 46.92 2.71
3690 4922 8.846943 TCACACACTTATTACATTGAATGTCT 57.153 30.769 14.91 6.33 43.67 3.41
3691 4923 8.935844 TCACACACTTATTACATTGAATGTCTC 58.064 33.333 14.91 0.00 43.67 3.36
3692 4924 8.720562 CACACACTTATTACATTGAATGTCTCA 58.279 33.333 14.91 0.67 43.67 3.27
3743 4975 7.900782 GCTTAAGGCCATCTAATAACGATAA 57.099 36.000 5.01 0.00 34.27 1.75
3744 4976 7.740246 GCTTAAGGCCATCTAATAACGATAAC 58.260 38.462 5.01 0.00 34.27 1.89
3745 4977 7.386848 GCTTAAGGCCATCTAATAACGATAACA 59.613 37.037 5.01 0.00 34.27 2.41
3746 4978 8.827177 TTAAGGCCATCTAATAACGATAACAG 57.173 34.615 5.01 0.00 0.00 3.16
3747 4979 5.238583 AGGCCATCTAATAACGATAACAGC 58.761 41.667 5.01 0.00 0.00 4.40
3748 4980 4.091509 GGCCATCTAATAACGATAACAGCG 59.908 45.833 0.00 0.00 0.00 5.18
3749 4981 4.091509 GCCATCTAATAACGATAACAGCGG 59.908 45.833 0.00 0.00 0.00 5.52
3750 4982 5.466819 CCATCTAATAACGATAACAGCGGA 58.533 41.667 0.00 0.00 0.00 5.54
3751 4983 5.924254 CCATCTAATAACGATAACAGCGGAA 59.076 40.000 0.00 0.00 0.00 4.30
3752 4984 6.422701 CCATCTAATAACGATAACAGCGGAAA 59.577 38.462 0.00 0.00 0.00 3.13
3753 4985 7.359264 CCATCTAATAACGATAACAGCGGAAAG 60.359 40.741 0.00 0.00 0.00 2.62
3766 4998 3.682372 GCGGAAAGCTTGGAAGATAAG 57.318 47.619 0.00 0.00 44.04 1.73
3767 4999 3.010420 GCGGAAAGCTTGGAAGATAAGT 58.990 45.455 0.00 0.00 44.04 2.24
3768 5000 3.181506 GCGGAAAGCTTGGAAGATAAGTG 60.182 47.826 0.00 0.00 44.04 3.16
3769 5001 4.253685 CGGAAAGCTTGGAAGATAAGTGA 58.746 43.478 0.00 0.00 0.00 3.41
3770 5002 4.331168 CGGAAAGCTTGGAAGATAAGTGAG 59.669 45.833 0.00 0.00 0.00 3.51
3771 5003 5.249420 GGAAAGCTTGGAAGATAAGTGAGT 58.751 41.667 0.00 0.00 0.00 3.41
3772 5004 5.352846 GGAAAGCTTGGAAGATAAGTGAGTC 59.647 44.000 0.00 0.00 0.00 3.36
3773 5005 4.479786 AGCTTGGAAGATAAGTGAGTCC 57.520 45.455 0.00 0.00 0.00 3.85
3774 5006 3.840666 AGCTTGGAAGATAAGTGAGTCCA 59.159 43.478 0.00 0.00 36.59 4.02
3775 5007 4.472833 AGCTTGGAAGATAAGTGAGTCCAT 59.527 41.667 0.00 0.00 38.16 3.41
3776 5008 4.813697 GCTTGGAAGATAAGTGAGTCCATC 59.186 45.833 0.00 0.00 38.16 3.51
3777 5009 5.627735 GCTTGGAAGATAAGTGAGTCCATCA 60.628 44.000 0.00 0.00 38.16 3.07
3778 5010 6.373005 TTGGAAGATAAGTGAGTCCATCAA 57.627 37.500 0.00 0.00 40.43 2.57
3779 5011 5.734720 TGGAAGATAAGTGAGTCCATCAAC 58.265 41.667 0.00 0.00 40.43 3.18
3780 5012 5.485353 TGGAAGATAAGTGAGTCCATCAACT 59.515 40.000 0.00 0.00 40.43 3.16
3781 5013 6.045955 GGAAGATAAGTGAGTCCATCAACTC 58.954 44.000 0.00 0.00 44.87 3.01
3782 5014 5.606348 AGATAAGTGAGTCCATCAACTCC 57.394 43.478 1.88 0.00 44.17 3.85
3783 5015 5.026121 AGATAAGTGAGTCCATCAACTCCA 58.974 41.667 1.88 0.00 44.17 3.86
3784 5016 5.485353 AGATAAGTGAGTCCATCAACTCCAA 59.515 40.000 1.88 0.00 44.17 3.53
3785 5017 3.409026 AGTGAGTCCATCAACTCCAAC 57.591 47.619 1.88 0.00 44.17 3.77
3786 5018 2.069273 GTGAGTCCATCAACTCCAACG 58.931 52.381 1.88 0.00 44.17 4.10
3787 5019 1.967779 TGAGTCCATCAACTCCAACGA 59.032 47.619 0.00 0.00 44.17 3.85
3788 5020 2.288825 TGAGTCCATCAACTCCAACGAC 60.289 50.000 0.00 0.00 44.17 4.34
3789 5021 1.691976 AGTCCATCAACTCCAACGACA 59.308 47.619 0.00 0.00 0.00 4.35
3790 5022 2.303022 AGTCCATCAACTCCAACGACAT 59.697 45.455 0.00 0.00 0.00 3.06
3791 5023 2.673368 GTCCATCAACTCCAACGACATC 59.327 50.000 0.00 0.00 0.00 3.06
3792 5024 2.301583 TCCATCAACTCCAACGACATCA 59.698 45.455 0.00 0.00 0.00 3.07
3793 5025 2.416547 CCATCAACTCCAACGACATCAC 59.583 50.000 0.00 0.00 0.00 3.06
3794 5026 3.329386 CATCAACTCCAACGACATCACT 58.671 45.455 0.00 0.00 0.00 3.41
3795 5027 2.754472 TCAACTCCAACGACATCACTG 58.246 47.619 0.00 0.00 0.00 3.66
3796 5028 2.364002 TCAACTCCAACGACATCACTGA 59.636 45.455 0.00 0.00 0.00 3.41
3797 5029 2.732412 ACTCCAACGACATCACTGAG 57.268 50.000 0.00 0.00 0.00 3.35
3798 5030 1.964223 ACTCCAACGACATCACTGAGT 59.036 47.619 0.00 0.00 0.00 3.41
3799 5031 3.154710 ACTCCAACGACATCACTGAGTA 58.845 45.455 0.00 0.00 30.35 2.59
3800 5032 3.764434 ACTCCAACGACATCACTGAGTAT 59.236 43.478 0.00 0.00 30.35 2.12
3801 5033 4.948004 ACTCCAACGACATCACTGAGTATA 59.052 41.667 0.00 0.00 30.35 1.47
3802 5034 5.417894 ACTCCAACGACATCACTGAGTATAA 59.582 40.000 0.00 0.00 30.35 0.98
3803 5035 5.891451 TCCAACGACATCACTGAGTATAAG 58.109 41.667 0.00 0.00 0.00 1.73
3804 5036 5.650703 TCCAACGACATCACTGAGTATAAGA 59.349 40.000 0.00 0.00 0.00 2.10
3805 5037 6.321435 TCCAACGACATCACTGAGTATAAGAT 59.679 38.462 0.00 0.00 0.00 2.40
3806 5038 6.638873 CCAACGACATCACTGAGTATAAGATC 59.361 42.308 0.00 0.00 0.00 2.75
3807 5039 6.944234 ACGACATCACTGAGTATAAGATCA 57.056 37.500 0.00 0.00 0.00 2.92
3808 5040 6.730175 ACGACATCACTGAGTATAAGATCAC 58.270 40.000 0.00 0.00 0.00 3.06
3809 5041 5.848559 CGACATCACTGAGTATAAGATCACG 59.151 44.000 0.00 0.00 0.00 4.35
3810 5042 6.292919 CGACATCACTGAGTATAAGATCACGA 60.293 42.308 0.00 0.00 0.00 4.35
3811 5043 6.730175 ACATCACTGAGTATAAGATCACGAC 58.270 40.000 0.00 0.00 0.00 4.34
3812 5044 5.752892 TCACTGAGTATAAGATCACGACC 57.247 43.478 0.00 0.00 0.00 4.79
3813 5045 5.437946 TCACTGAGTATAAGATCACGACCT 58.562 41.667 0.00 0.00 0.00 3.85
3814 5046 6.589135 TCACTGAGTATAAGATCACGACCTA 58.411 40.000 0.00 0.00 0.00 3.08
3815 5047 7.052248 TCACTGAGTATAAGATCACGACCTAA 58.948 38.462 0.00 0.00 0.00 2.69
3816 5048 7.226918 TCACTGAGTATAAGATCACGACCTAAG 59.773 40.741 0.00 0.00 0.00 2.18
3817 5049 7.226918 CACTGAGTATAAGATCACGACCTAAGA 59.773 40.741 0.00 0.00 0.00 2.10
3818 5050 7.227116 ACTGAGTATAAGATCACGACCTAAGAC 59.773 40.741 0.00 0.00 0.00 3.01
3819 5051 7.052248 TGAGTATAAGATCACGACCTAAGACA 58.948 38.462 0.00 0.00 0.00 3.41
3820 5052 7.012138 TGAGTATAAGATCACGACCTAAGACAC 59.988 40.741 0.00 0.00 0.00 3.67
3821 5053 3.870633 AAGATCACGACCTAAGACACC 57.129 47.619 0.00 0.00 0.00 4.16
3822 5054 3.088789 AGATCACGACCTAAGACACCT 57.911 47.619 0.00 0.00 0.00 4.00
3823 5055 3.432378 AGATCACGACCTAAGACACCTT 58.568 45.455 0.00 0.00 36.43 3.50
3824 5056 4.597004 AGATCACGACCTAAGACACCTTA 58.403 43.478 0.00 0.00 33.94 2.69
3825 5057 4.398673 AGATCACGACCTAAGACACCTTAC 59.601 45.833 0.00 0.00 33.94 2.34
3826 5058 3.759581 TCACGACCTAAGACACCTTACT 58.240 45.455 0.00 0.00 33.94 2.24
3827 5059 3.755378 TCACGACCTAAGACACCTTACTC 59.245 47.826 0.00 0.00 33.94 2.59
3828 5060 2.746362 ACGACCTAAGACACCTTACTCG 59.254 50.000 0.00 0.00 36.72 4.18
3829 5061 2.746362 CGACCTAAGACACCTTACTCGT 59.254 50.000 0.00 0.00 31.57 4.18
3830 5062 3.181512 CGACCTAAGACACCTTACTCGTC 60.182 52.174 0.00 0.00 31.57 4.20
3831 5063 2.746362 ACCTAAGACACCTTACTCGTCG 59.254 50.000 0.00 0.00 34.80 5.12
3832 5064 2.746362 CCTAAGACACCTTACTCGTCGT 59.254 50.000 0.00 0.00 34.80 4.34
3833 5065 2.985406 AAGACACCTTACTCGTCGTC 57.015 50.000 0.00 0.00 34.80 4.20
3834 5066 2.181954 AGACACCTTACTCGTCGTCT 57.818 50.000 0.00 0.00 34.80 4.18
3835 5067 1.805345 AGACACCTTACTCGTCGTCTG 59.195 52.381 0.00 0.00 32.70 3.51
3836 5068 1.802960 GACACCTTACTCGTCGTCTGA 59.197 52.381 0.00 0.00 0.00 3.27
3837 5069 2.224606 ACACCTTACTCGTCGTCTGAA 58.775 47.619 0.00 0.00 0.00 3.02
3838 5070 2.620115 ACACCTTACTCGTCGTCTGAAA 59.380 45.455 0.00 0.00 0.00 2.69
3839 5071 3.067180 ACACCTTACTCGTCGTCTGAAAA 59.933 43.478 0.00 0.00 0.00 2.29
3840 5072 3.669122 CACCTTACTCGTCGTCTGAAAAG 59.331 47.826 0.00 0.00 0.00 2.27
3841 5073 3.317430 ACCTTACTCGTCGTCTGAAAAGT 59.683 43.478 0.00 0.00 0.00 2.66
3842 5074 3.913163 CCTTACTCGTCGTCTGAAAAGTC 59.087 47.826 0.00 0.00 0.00 3.01
3843 5075 4.320348 CCTTACTCGTCGTCTGAAAAGTCT 60.320 45.833 0.00 0.00 0.00 3.24
3844 5076 3.001395 ACTCGTCGTCTGAAAAGTCTG 57.999 47.619 0.00 0.00 0.00 3.51
3845 5077 1.716581 CTCGTCGTCTGAAAAGTCTGC 59.283 52.381 0.00 0.00 0.00 4.26
3846 5078 1.066454 TCGTCGTCTGAAAAGTCTGCA 59.934 47.619 0.00 0.00 0.00 4.41
3847 5079 1.858458 CGTCGTCTGAAAAGTCTGCAA 59.142 47.619 0.00 0.00 0.00 4.08
3848 5080 2.347661 CGTCGTCTGAAAAGTCTGCAAC 60.348 50.000 0.00 0.00 0.00 4.17
3849 5081 2.607635 GTCGTCTGAAAAGTCTGCAACA 59.392 45.455 0.00 0.00 0.00 3.33
3850 5082 3.248602 GTCGTCTGAAAAGTCTGCAACAT 59.751 43.478 0.00 0.00 0.00 2.71
3851 5083 3.248363 TCGTCTGAAAAGTCTGCAACATG 59.752 43.478 0.00 0.00 0.00 3.21
3852 5084 3.248363 CGTCTGAAAAGTCTGCAACATGA 59.752 43.478 0.00 0.00 0.00 3.07
3853 5085 4.260743 CGTCTGAAAAGTCTGCAACATGAA 60.261 41.667 0.00 0.00 0.00 2.57
3854 5086 4.972440 GTCTGAAAAGTCTGCAACATGAAC 59.028 41.667 0.00 0.00 0.00 3.18
3855 5087 3.951306 TGAAAAGTCTGCAACATGAACG 58.049 40.909 0.00 0.00 0.00 3.95
3856 5088 3.376859 TGAAAAGTCTGCAACATGAACGT 59.623 39.130 0.00 0.00 0.00 3.99
3857 5089 4.142491 TGAAAAGTCTGCAACATGAACGTT 60.142 37.500 0.00 0.00 0.00 3.99
3863 5095 2.800096 CAACATGAACGTTGCAGCC 58.200 52.632 5.00 0.00 39.82 4.85
3864 5096 0.664166 CAACATGAACGTTGCAGCCC 60.664 55.000 5.00 0.00 39.82 5.19
3865 5097 2.128853 AACATGAACGTTGCAGCCCG 62.129 55.000 5.00 0.00 0.00 6.13
3866 5098 2.031919 ATGAACGTTGCAGCCCGA 59.968 55.556 5.00 0.00 0.00 5.14
3867 5099 1.599518 ATGAACGTTGCAGCCCGAA 60.600 52.632 5.00 0.00 0.00 4.30
3868 5100 1.169661 ATGAACGTTGCAGCCCGAAA 61.170 50.000 5.00 0.00 0.00 3.46
3869 5101 1.357334 GAACGTTGCAGCCCGAAAA 59.643 52.632 5.00 0.00 0.00 2.29
3870 5102 0.933047 GAACGTTGCAGCCCGAAAAC 60.933 55.000 5.00 0.00 0.00 2.43
3871 5103 2.426752 CGTTGCAGCCCGAAAACG 60.427 61.111 1.06 1.06 39.35 3.60
3872 5104 2.050442 GTTGCAGCCCGAAAACGG 60.050 61.111 0.00 0.00 0.00 4.44
3879 5111 2.281208 CCCGAAAACGGGTCAGCA 60.281 61.111 18.03 0.00 43.90 4.41
3880 5112 2.613506 CCCGAAAACGGGTCAGCAC 61.614 63.158 18.03 0.00 43.90 4.40
3881 5113 1.890041 CCGAAAACGGGTCAGCACA 60.890 57.895 0.00 0.00 0.00 4.57
3882 5114 1.234615 CCGAAAACGGGTCAGCACAT 61.235 55.000 0.00 0.00 0.00 3.21
3883 5115 0.110238 CGAAAACGGGTCAGCACATG 60.110 55.000 0.00 0.00 0.00 3.21
3884 5116 0.240945 GAAAACGGGTCAGCACATGG 59.759 55.000 0.00 0.00 0.00 3.66
3885 5117 0.179004 AAAACGGGTCAGCACATGGA 60.179 50.000 0.00 0.00 0.00 3.41
3886 5118 0.179004 AAACGGGTCAGCACATGGAA 60.179 50.000 0.00 0.00 0.00 3.53
3887 5119 0.038166 AACGGGTCAGCACATGGAAT 59.962 50.000 0.00 0.00 0.00 3.01
3888 5120 0.908910 ACGGGTCAGCACATGGAATA 59.091 50.000 0.00 0.00 0.00 1.75
3889 5121 1.490490 ACGGGTCAGCACATGGAATAT 59.510 47.619 0.00 0.00 0.00 1.28
3890 5122 1.875514 CGGGTCAGCACATGGAATATG 59.124 52.381 0.00 0.00 0.00 1.78
3891 5123 1.610522 GGGTCAGCACATGGAATATGC 59.389 52.381 0.00 0.00 39.74 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.652994 TGTTTATTTGAATACCAGCACCC 57.347 39.130 0.00 0.00 0.00 4.61
263 264 8.827177 AGACAAATGTAAGACAAGTAATTCGA 57.173 30.769 0.00 0.00 0.00 3.71
349 355 3.447950 AGTACCTCCGTCCCAAATTACT 58.552 45.455 0.00 0.00 0.00 2.24
458 464 4.263435 TGGTTTACCCTAATGCTAAACCG 58.737 43.478 13.66 0.00 46.81 4.44
460 466 6.578163 TGTTGGTTTACCCTAATGCTAAAC 57.422 37.500 0.00 0.00 34.29 2.01
487 493 7.382759 TCGGTGCCTTTATAATTCAAAACAAAC 59.617 33.333 0.00 0.00 0.00 2.93
609 615 5.988561 GGGTCATAAAAATTGCACACAAAGA 59.011 36.000 0.00 0.00 39.77 2.52
616 622 8.546597 ACATTAAAGGGTCATAAAAATTGCAC 57.453 30.769 0.00 0.00 0.00 4.57
728 734 5.627182 AAGTGATGATCCTGCTGATTAGT 57.373 39.130 0.00 0.00 32.41 2.24
749 756 2.426738 CACAGTTCAGGCCAAACAGAAA 59.573 45.455 19.60 0.00 0.00 2.52
1058 1065 2.497675 TGGACTGAGCTCTGGTAATGAC 59.502 50.000 22.75 6.55 0.00 3.06
1071 1078 3.519579 CTGAGCAGTATGTTGGACTGAG 58.480 50.000 6.96 0.00 46.01 3.35
1100 1107 4.002982 TGATGTGGAATCAAGTGTAGTGC 58.997 43.478 0.00 0.00 0.00 4.40
1290 1297 1.086634 CAGCCTCCTTTAGCGAGCAC 61.087 60.000 0.00 0.00 0.00 4.40
1591 1598 6.348295 GCTTCAGACGCATATGATGATGAAAT 60.348 38.462 6.97 0.00 0.00 2.17
1629 1636 3.877508 GTCTGGGTATCTTCGAAAATGGG 59.122 47.826 0.00 0.00 0.00 4.00
1693 1700 0.873054 CTCTTCACACTTGCTGGCAG 59.127 55.000 10.94 10.94 0.00 4.85
1911 1918 2.519541 TCGCATCTCCTCCCTCCG 60.520 66.667 0.00 0.00 0.00 4.63
1926 1933 5.389935 GCTCTTTGTACATCCAAGAAACTCG 60.390 44.000 9.23 0.66 0.00 4.18
2082 2089 0.882042 CGCTCTTGGTGCACTTGTCT 60.882 55.000 17.98 0.00 0.00 3.41
2154 2161 3.007182 CACCCTTTGCACATTCTGGAAAT 59.993 43.478 0.00 0.00 39.27 2.17
2304 2311 0.182775 ACACTCCACCACCCTCAAAC 59.817 55.000 0.00 0.00 0.00 2.93
2328 2335 4.170062 CCGCCATGCACGCTCTTG 62.170 66.667 6.09 0.00 0.00 3.02
2403 2410 1.142748 CCGCCCTCTAGCACTCTTG 59.857 63.158 0.00 0.00 0.00 3.02
2868 2875 0.612744 TCCACGCCATCATGACAGAA 59.387 50.000 0.00 0.00 0.00 3.02
2961 2968 5.511202 GGACAACAATTGGTGAAATGTGGAT 60.511 40.000 29.74 3.68 35.97 3.41
2990 3008 2.027561 TGTCCCCTATCACTTCCAAACG 60.028 50.000 0.00 0.00 0.00 3.60
3002 3020 4.016479 ACACGGAGGATATATGTCCCCTAT 60.016 45.833 14.45 4.87 39.17 2.57
3005 3023 2.537143 ACACGGAGGATATATGTCCCC 58.463 52.381 14.45 13.60 39.17 4.81
3006 3024 4.597004 TCTACACGGAGGATATATGTCCC 58.403 47.826 14.45 6.65 39.17 4.46
3077 3095 5.885912 AGGGCAGTTTGACGACATTAATAAT 59.114 36.000 0.00 0.00 0.00 1.28
3078 3096 5.250200 AGGGCAGTTTGACGACATTAATAA 58.750 37.500 0.00 0.00 0.00 1.40
3079 3097 4.839121 AGGGCAGTTTGACGACATTAATA 58.161 39.130 0.00 0.00 0.00 0.98
3122 3140 9.301897 TGTGAAGCAGTATCAGACTACATATAT 57.698 33.333 0.00 0.00 35.64 0.86
3124 3142 7.588497 TGTGAAGCAGTATCAGACTACATAT 57.412 36.000 0.00 0.00 35.64 1.78
3126 3144 5.921962 TGTGAAGCAGTATCAGACTACAT 57.078 39.130 0.00 0.00 35.64 2.29
3128 3146 6.256757 GGAAATGTGAAGCAGTATCAGACTAC 59.743 42.308 0.00 0.00 35.64 2.73
3129 3147 6.155221 AGGAAATGTGAAGCAGTATCAGACTA 59.845 38.462 0.00 0.00 35.64 2.59
3130 3148 5.046014 AGGAAATGTGAAGCAGTATCAGACT 60.046 40.000 0.00 0.00 39.82 3.24
3131 3149 5.181748 AGGAAATGTGAAGCAGTATCAGAC 58.818 41.667 0.00 0.00 0.00 3.51
3176 3194 3.694566 AGAAACACGAAGGAAAGCAAACT 59.305 39.130 0.00 0.00 0.00 2.66
3190 3208 3.181520 GCTGCACTATTACCAGAAACACG 60.182 47.826 0.00 0.00 0.00 4.49
3232 3259 1.363744 AGACGACGTACTTCTACCCG 58.636 55.000 0.00 0.00 0.00 5.28
3243 3270 2.876550 TCATCCGATCAATAGACGACGT 59.123 45.455 0.00 0.00 0.00 4.34
3244 3271 3.483734 CTCATCCGATCAATAGACGACG 58.516 50.000 0.00 0.00 0.00 5.12
3248 3275 4.608948 AACCCTCATCCGATCAATAGAC 57.391 45.455 0.00 0.00 0.00 2.59
3250 3277 6.372659 CCAAATAACCCTCATCCGATCAATAG 59.627 42.308 0.00 0.00 0.00 1.73
3339 3366 3.165890 GACATGTGCATCAACGTTCATG 58.834 45.455 18.53 18.53 38.65 3.07
3345 3379 1.915350 GCAATGACATGTGCATCAACG 59.085 47.619 1.15 0.00 40.58 4.10
3355 3389 7.928167 TGGTATAGAGTTTCTAGCAATGACATG 59.072 37.037 0.00 0.00 31.67 3.21
3358 3393 7.224949 GGTTGGTATAGAGTTTCTAGCAATGAC 59.775 40.741 0.00 0.00 35.88 3.06
3376 3411 3.375699 TGGTTGGTGTTTTGGTTGGTAT 58.624 40.909 0.00 0.00 0.00 2.73
3379 3414 2.770164 TTGGTTGGTGTTTTGGTTGG 57.230 45.000 0.00 0.00 0.00 3.77
3380 3415 3.931578 TCTTTGGTTGGTGTTTTGGTTG 58.068 40.909 0.00 0.00 0.00 3.77
3381 3416 3.835395 TCTCTTTGGTTGGTGTTTTGGTT 59.165 39.130 0.00 0.00 0.00 3.67
3382 3417 3.194755 GTCTCTTTGGTTGGTGTTTTGGT 59.805 43.478 0.00 0.00 0.00 3.67
3383 3418 3.430236 GGTCTCTTTGGTTGGTGTTTTGG 60.430 47.826 0.00 0.00 0.00 3.28
3384 3419 3.430236 GGGTCTCTTTGGTTGGTGTTTTG 60.430 47.826 0.00 0.00 0.00 2.44
3385 3420 2.764010 GGGTCTCTTTGGTTGGTGTTTT 59.236 45.455 0.00 0.00 0.00 2.43
3386 3421 2.024369 AGGGTCTCTTTGGTTGGTGTTT 60.024 45.455 0.00 0.00 0.00 2.83
3388 3423 1.133792 CAGGGTCTCTTTGGTTGGTGT 60.134 52.381 0.00 0.00 0.00 4.16
3391 3426 0.251341 CCCAGGGTCTCTTTGGTTGG 60.251 60.000 0.00 0.00 0.00 3.77
3392 3427 0.771127 TCCCAGGGTCTCTTTGGTTG 59.229 55.000 5.01 0.00 0.00 3.77
3396 3431 2.573462 TCAGATTCCCAGGGTCTCTTTG 59.427 50.000 5.01 0.00 0.00 2.77
3397 3432 2.573915 GTCAGATTCCCAGGGTCTCTTT 59.426 50.000 5.01 0.00 0.00 2.52
3398 3433 2.192263 GTCAGATTCCCAGGGTCTCTT 58.808 52.381 5.01 0.00 0.00 2.85
3400 3435 1.872773 AGTCAGATTCCCAGGGTCTC 58.127 55.000 5.01 3.59 0.00 3.36
3401 3436 2.192263 GAAGTCAGATTCCCAGGGTCT 58.808 52.381 5.01 0.00 0.00 3.85
3422 4643 1.132657 TCTGGAGGAAACCACCACCTA 60.133 52.381 3.01 0.00 40.49 3.08
3464 4685 0.031994 AGGTTGCGTTTGACATTGGC 59.968 50.000 0.00 0.00 0.00 4.52
3468 4689 1.808411 ATCGAGGTTGCGTTTGACAT 58.192 45.000 0.00 0.00 0.00 3.06
3482 4714 1.734465 GGAAGAACCAGTGCAATCGAG 59.266 52.381 0.00 0.00 38.79 4.04
3483 4715 1.347707 AGGAAGAACCAGTGCAATCGA 59.652 47.619 0.00 0.00 42.04 3.59
3484 4716 1.813513 AGGAAGAACCAGTGCAATCG 58.186 50.000 0.00 0.00 42.04 3.34
3485 4717 4.082733 GGTTAAGGAAGAACCAGTGCAATC 60.083 45.833 0.00 0.00 44.92 2.67
3486 4718 3.826729 GGTTAAGGAAGAACCAGTGCAAT 59.173 43.478 0.00 0.00 44.92 3.56
3487 4719 3.219281 GGTTAAGGAAGAACCAGTGCAA 58.781 45.455 0.00 0.00 44.92 4.08
3488 4720 2.858745 GGTTAAGGAAGAACCAGTGCA 58.141 47.619 0.00 0.00 44.92 4.57
3510 4742 2.540361 GGAGATCATTCATGTTGCGTGC 60.540 50.000 0.00 0.00 0.00 5.34
3529 4761 4.634012 TCATCTCCTTTTCCTTTTCGGA 57.366 40.909 0.00 0.00 41.06 4.55
3576 4808 4.698575 TGGTCGCTACATGTGCATATTAA 58.301 39.130 9.11 0.00 0.00 1.40
3577 4809 4.038642 TCTGGTCGCTACATGTGCATATTA 59.961 41.667 9.11 0.00 0.00 0.98
3578 4810 3.133691 CTGGTCGCTACATGTGCATATT 58.866 45.455 9.11 0.00 0.00 1.28
3579 4811 2.365293 TCTGGTCGCTACATGTGCATAT 59.635 45.455 9.11 0.00 0.00 1.78
3580 4812 1.754226 TCTGGTCGCTACATGTGCATA 59.246 47.619 9.11 0.00 0.00 3.14
3581 4813 0.536724 TCTGGTCGCTACATGTGCAT 59.463 50.000 9.11 0.00 0.00 3.96
3582 4814 0.536724 ATCTGGTCGCTACATGTGCA 59.463 50.000 9.11 0.00 0.00 4.57
3583 4815 1.202463 AGATCTGGTCGCTACATGTGC 60.202 52.381 9.11 9.29 0.00 4.57
3584 4816 2.099756 TGAGATCTGGTCGCTACATGTG 59.900 50.000 9.11 0.00 0.00 3.21
3585 4817 2.360483 CTGAGATCTGGTCGCTACATGT 59.640 50.000 0.00 2.69 0.00 3.21
3586 4818 2.620585 TCTGAGATCTGGTCGCTACATG 59.379 50.000 0.00 0.00 0.00 3.21
3587 4819 2.621055 GTCTGAGATCTGGTCGCTACAT 59.379 50.000 0.00 0.00 0.00 2.29
3588 4820 2.017782 GTCTGAGATCTGGTCGCTACA 58.982 52.381 0.00 0.00 0.00 2.74
3589 4821 2.017782 TGTCTGAGATCTGGTCGCTAC 58.982 52.381 0.00 0.00 0.00 3.58
3590 4822 2.293170 CTGTCTGAGATCTGGTCGCTA 58.707 52.381 0.00 0.00 0.00 4.26
3591 4823 1.102154 CTGTCTGAGATCTGGTCGCT 58.898 55.000 0.00 0.00 0.00 4.93
3592 4824 0.102120 CCTGTCTGAGATCTGGTCGC 59.898 60.000 0.00 0.00 0.00 5.19
3593 4825 0.743688 CCCTGTCTGAGATCTGGTCG 59.256 60.000 0.00 0.00 0.00 4.79
3594 4826 2.151502 TCCCTGTCTGAGATCTGGTC 57.848 55.000 0.00 0.00 0.00 4.02
3595 4827 2.676748 GATCCCTGTCTGAGATCTGGT 58.323 52.381 0.00 0.00 34.78 4.00
3596 4828 1.612950 CGATCCCTGTCTGAGATCTGG 59.387 57.143 0.00 0.00 35.34 3.86
3597 4829 1.612950 CCGATCCCTGTCTGAGATCTG 59.387 57.143 0.00 0.00 35.34 2.90
3598 4830 1.216678 ACCGATCCCTGTCTGAGATCT 59.783 52.381 0.00 0.00 35.34 2.75
3599 4831 1.698506 ACCGATCCCTGTCTGAGATC 58.301 55.000 0.00 0.00 34.37 2.75
3600 4832 3.314307 TTACCGATCCCTGTCTGAGAT 57.686 47.619 0.00 0.00 0.00 2.75
3601 4833 2.820728 TTACCGATCCCTGTCTGAGA 57.179 50.000 0.00 0.00 0.00 3.27
3602 4834 2.546795 GCATTACCGATCCCTGTCTGAG 60.547 54.545 0.00 0.00 0.00 3.35
3603 4835 1.412710 GCATTACCGATCCCTGTCTGA 59.587 52.381 0.00 0.00 0.00 3.27
3604 4836 1.414181 AGCATTACCGATCCCTGTCTG 59.586 52.381 0.00 0.00 0.00 3.51
3605 4837 1.414181 CAGCATTACCGATCCCTGTCT 59.586 52.381 0.00 0.00 0.00 3.41
3606 4838 1.412710 TCAGCATTACCGATCCCTGTC 59.587 52.381 0.00 0.00 0.00 3.51
3607 4839 1.496060 TCAGCATTACCGATCCCTGT 58.504 50.000 0.00 0.00 0.00 4.00
3608 4840 2.847327 ATCAGCATTACCGATCCCTG 57.153 50.000 0.00 0.00 0.00 4.45
3609 4841 2.231478 CGTATCAGCATTACCGATCCCT 59.769 50.000 0.00 0.00 0.00 4.20
3610 4842 2.607187 CGTATCAGCATTACCGATCCC 58.393 52.381 0.00 0.00 0.00 3.85
3611 4843 1.993370 GCGTATCAGCATTACCGATCC 59.007 52.381 0.00 0.00 37.05 3.36
3612 4844 1.649171 CGCGTATCAGCATTACCGATC 59.351 52.381 0.00 0.00 36.85 3.69
3613 4845 1.698165 CGCGTATCAGCATTACCGAT 58.302 50.000 0.00 0.00 36.85 4.18
3614 4846 0.937699 GCGCGTATCAGCATTACCGA 60.938 55.000 8.43 0.00 36.85 4.69
3615 4847 1.212455 TGCGCGTATCAGCATTACCG 61.212 55.000 8.43 0.00 38.59 4.02
3616 4848 0.508641 CTGCGCGTATCAGCATTACC 59.491 55.000 8.43 0.00 42.95 2.85
3617 4849 1.209128 ACTGCGCGTATCAGCATTAC 58.791 50.000 8.43 0.00 42.95 1.89
3618 4850 2.034179 AGTACTGCGCGTATCAGCATTA 59.966 45.455 8.43 0.00 42.95 1.90
3619 4851 1.202417 AGTACTGCGCGTATCAGCATT 60.202 47.619 8.43 0.00 42.95 3.56
3620 4852 0.385751 AGTACTGCGCGTATCAGCAT 59.614 50.000 8.43 0.00 42.95 3.79
3621 4853 0.172578 AAGTACTGCGCGTATCAGCA 59.827 50.000 8.43 0.00 41.55 4.41
3622 4854 0.572590 CAAGTACTGCGCGTATCAGC 59.427 55.000 8.43 0.00 35.04 4.26
3623 4855 2.188837 TCAAGTACTGCGCGTATCAG 57.811 50.000 8.43 9.49 37.56 2.90
3624 4856 2.162809 TCTTCAAGTACTGCGCGTATCA 59.837 45.455 8.43 0.00 0.00 2.15
3625 4857 2.793933 TCTTCAAGTACTGCGCGTATC 58.206 47.619 8.43 8.71 0.00 2.24
3626 4858 2.933495 TCTTCAAGTACTGCGCGTAT 57.067 45.000 8.43 0.00 0.00 3.06
3627 4859 2.710220 TTCTTCAAGTACTGCGCGTA 57.290 45.000 8.43 0.71 0.00 4.42
3628 4860 2.080286 ATTCTTCAAGTACTGCGCGT 57.920 45.000 8.43 6.51 0.00 6.01
3629 4861 3.455619 AAATTCTTCAAGTACTGCGCG 57.544 42.857 0.00 0.00 0.00 6.86
3630 4862 9.798885 CTATTATAAATTCTTCAAGTACTGCGC 57.201 33.333 0.00 0.00 0.00 6.09
3653 4885 9.751542 GTAATAAGTGTGTGATTGCTACTCTAT 57.248 33.333 0.00 0.00 0.00 1.98
3654 4886 8.745590 TGTAATAAGTGTGTGATTGCTACTCTA 58.254 33.333 0.00 0.00 0.00 2.43
3655 4887 7.611770 TGTAATAAGTGTGTGATTGCTACTCT 58.388 34.615 0.00 0.00 0.00 3.24
3656 4888 7.827819 TGTAATAAGTGTGTGATTGCTACTC 57.172 36.000 0.00 0.00 0.00 2.59
3657 4889 8.668353 CAATGTAATAAGTGTGTGATTGCTACT 58.332 33.333 0.00 0.00 0.00 2.57
3658 4890 8.664798 TCAATGTAATAAGTGTGTGATTGCTAC 58.335 33.333 0.00 0.00 0.00 3.58
3659 4891 8.785329 TCAATGTAATAAGTGTGTGATTGCTA 57.215 30.769 0.00 0.00 0.00 3.49
3660 4892 7.686438 TCAATGTAATAAGTGTGTGATTGCT 57.314 32.000 0.00 0.00 0.00 3.91
3661 4893 8.800972 CATTCAATGTAATAAGTGTGTGATTGC 58.199 33.333 0.00 0.00 0.00 3.56
3662 4894 9.844790 ACATTCAATGTAATAAGTGTGTGATTG 57.155 29.630 0.00 0.00 42.78 2.67
3664 4896 9.453572 AGACATTCAATGTAATAAGTGTGTGAT 57.546 29.630 2.04 0.00 45.03 3.06
3665 4897 8.846943 AGACATTCAATGTAATAAGTGTGTGA 57.153 30.769 2.04 0.00 45.03 3.58
3666 4898 8.720562 TGAGACATTCAATGTAATAAGTGTGTG 58.279 33.333 2.04 0.00 45.03 3.82
3667 4899 8.846943 TGAGACATTCAATGTAATAAGTGTGT 57.153 30.769 2.04 0.00 45.03 3.72
3719 4951 7.386848 TGTTATCGTTATTAGATGGCCTTAAGC 59.613 37.037 3.32 0.00 42.60 3.09
3720 4952 8.827177 TGTTATCGTTATTAGATGGCCTTAAG 57.173 34.615 3.32 0.00 0.00 1.85
3721 4953 7.386848 GCTGTTATCGTTATTAGATGGCCTTAA 59.613 37.037 3.32 0.49 0.00 1.85
3722 4954 6.872020 GCTGTTATCGTTATTAGATGGCCTTA 59.128 38.462 3.32 0.00 0.00 2.69
3723 4955 5.701290 GCTGTTATCGTTATTAGATGGCCTT 59.299 40.000 3.32 0.00 0.00 4.35
3724 4956 5.238583 GCTGTTATCGTTATTAGATGGCCT 58.761 41.667 3.32 0.00 0.00 5.19
3725 4957 4.091509 CGCTGTTATCGTTATTAGATGGCC 59.908 45.833 0.00 0.00 0.00 5.36
3726 4958 4.091509 CCGCTGTTATCGTTATTAGATGGC 59.908 45.833 0.00 0.00 0.00 4.40
3727 4959 5.466819 TCCGCTGTTATCGTTATTAGATGG 58.533 41.667 0.00 0.00 0.00 3.51
3728 4960 7.402811 TTTCCGCTGTTATCGTTATTAGATG 57.597 36.000 0.00 0.00 0.00 2.90
3729 4961 6.145696 GCTTTCCGCTGTTATCGTTATTAGAT 59.854 38.462 0.00 0.00 35.14 1.98
3730 4962 5.461078 GCTTTCCGCTGTTATCGTTATTAGA 59.539 40.000 0.00 0.00 35.14 2.10
3731 4963 5.667175 GCTTTCCGCTGTTATCGTTATTAG 58.333 41.667 0.00 0.00 35.14 1.73
3732 4964 5.646467 GCTTTCCGCTGTTATCGTTATTA 57.354 39.130 0.00 0.00 35.14 0.98
3733 4965 4.531659 GCTTTCCGCTGTTATCGTTATT 57.468 40.909 0.00 0.00 35.14 1.40
3746 4978 3.010420 ACTTATCTTCCAAGCTTTCCGC 58.990 45.455 0.00 0.00 39.57 5.54
3747 4979 4.253685 TCACTTATCTTCCAAGCTTTCCG 58.746 43.478 0.00 0.00 0.00 4.30
3748 4980 5.249420 ACTCACTTATCTTCCAAGCTTTCC 58.751 41.667 0.00 0.00 0.00 3.13
3749 4981 5.352846 GGACTCACTTATCTTCCAAGCTTTC 59.647 44.000 0.00 0.00 0.00 2.62
3750 4982 5.221925 TGGACTCACTTATCTTCCAAGCTTT 60.222 40.000 0.00 0.00 33.31 3.51
3751 4983 4.287067 TGGACTCACTTATCTTCCAAGCTT 59.713 41.667 0.00 0.00 33.31 3.74
3752 4984 3.840666 TGGACTCACTTATCTTCCAAGCT 59.159 43.478 0.00 0.00 33.31 3.74
3753 4985 4.207891 TGGACTCACTTATCTTCCAAGC 57.792 45.455 0.00 0.00 33.31 4.01
3754 4986 5.982356 TGATGGACTCACTTATCTTCCAAG 58.018 41.667 0.00 0.00 39.77 3.61
3755 4987 6.013379 AGTTGATGGACTCACTTATCTTCCAA 60.013 38.462 0.00 0.00 39.77 3.53
3756 4988 5.485353 AGTTGATGGACTCACTTATCTTCCA 59.515 40.000 0.00 0.00 40.61 3.53
3757 4989 5.983540 AGTTGATGGACTCACTTATCTTCC 58.016 41.667 0.00 0.00 32.17 3.46
3758 4990 6.045955 GGAGTTGATGGACTCACTTATCTTC 58.954 44.000 7.27 0.00 46.21 2.87
3759 4991 5.485353 TGGAGTTGATGGACTCACTTATCTT 59.515 40.000 7.27 0.00 46.21 2.40
3760 4992 5.026121 TGGAGTTGATGGACTCACTTATCT 58.974 41.667 7.27 0.00 46.21 1.98
3761 4993 5.344743 TGGAGTTGATGGACTCACTTATC 57.655 43.478 7.27 0.00 46.21 1.75
3762 4994 5.491982 GTTGGAGTTGATGGACTCACTTAT 58.508 41.667 7.27 0.00 46.21 1.73
3763 4995 4.560716 CGTTGGAGTTGATGGACTCACTTA 60.561 45.833 7.27 0.00 46.21 2.24
3764 4996 3.744660 GTTGGAGTTGATGGACTCACTT 58.255 45.455 7.27 0.00 46.21 3.16
3765 4997 2.289072 CGTTGGAGTTGATGGACTCACT 60.289 50.000 7.27 0.00 46.21 3.41
3766 4998 2.069273 CGTTGGAGTTGATGGACTCAC 58.931 52.381 7.27 0.00 46.21 3.51
3767 4999 1.967779 TCGTTGGAGTTGATGGACTCA 59.032 47.619 7.27 0.00 46.21 3.41
3768 5000 2.288825 TGTCGTTGGAGTTGATGGACTC 60.289 50.000 0.00 0.00 44.20 3.36
3769 5001 1.691976 TGTCGTTGGAGTTGATGGACT 59.308 47.619 0.00 0.00 0.00 3.85
3770 5002 2.163818 TGTCGTTGGAGTTGATGGAC 57.836 50.000 0.00 0.00 0.00 4.02
3771 5003 2.301583 TGATGTCGTTGGAGTTGATGGA 59.698 45.455 0.00 0.00 0.00 3.41
3772 5004 2.416547 GTGATGTCGTTGGAGTTGATGG 59.583 50.000 0.00 0.00 0.00 3.51
3773 5005 3.124128 CAGTGATGTCGTTGGAGTTGATG 59.876 47.826 0.00 0.00 0.00 3.07
3774 5006 3.006859 TCAGTGATGTCGTTGGAGTTGAT 59.993 43.478 0.00 0.00 0.00 2.57
3775 5007 2.364002 TCAGTGATGTCGTTGGAGTTGA 59.636 45.455 0.00 0.00 0.00 3.18
3776 5008 2.733552 CTCAGTGATGTCGTTGGAGTTG 59.266 50.000 0.00 0.00 0.00 3.16
3777 5009 2.365617 ACTCAGTGATGTCGTTGGAGTT 59.634 45.455 0.00 0.00 30.53 3.01
3778 5010 1.964223 ACTCAGTGATGTCGTTGGAGT 59.036 47.619 0.00 0.00 0.00 3.85
3779 5011 2.732412 ACTCAGTGATGTCGTTGGAG 57.268 50.000 0.00 0.00 0.00 3.86
3780 5012 5.650703 TCTTATACTCAGTGATGTCGTTGGA 59.349 40.000 0.00 0.00 0.00 3.53
3781 5013 5.891451 TCTTATACTCAGTGATGTCGTTGG 58.109 41.667 0.00 0.00 0.00 3.77
3782 5014 7.166638 GTGATCTTATACTCAGTGATGTCGTTG 59.833 40.741 0.00 0.00 0.00 4.10
3783 5015 7.197017 GTGATCTTATACTCAGTGATGTCGTT 58.803 38.462 0.00 0.00 0.00 3.85
3784 5016 6.511929 CGTGATCTTATACTCAGTGATGTCGT 60.512 42.308 0.00 0.00 0.00 4.34
3785 5017 5.848559 CGTGATCTTATACTCAGTGATGTCG 59.151 44.000 0.00 0.00 0.00 4.35
3786 5018 6.853872 GTCGTGATCTTATACTCAGTGATGTC 59.146 42.308 0.00 0.00 0.00 3.06
3787 5019 6.238786 GGTCGTGATCTTATACTCAGTGATGT 60.239 42.308 0.00 0.00 0.00 3.06
3788 5020 6.016693 AGGTCGTGATCTTATACTCAGTGATG 60.017 42.308 0.00 0.00 0.00 3.07
3789 5021 6.065374 AGGTCGTGATCTTATACTCAGTGAT 58.935 40.000 0.00 0.00 0.00 3.06
3790 5022 5.437946 AGGTCGTGATCTTATACTCAGTGA 58.562 41.667 0.00 0.00 0.00 3.41
3791 5023 5.759506 AGGTCGTGATCTTATACTCAGTG 57.240 43.478 0.00 0.00 0.00 3.66
3792 5024 7.227116 GTCTTAGGTCGTGATCTTATACTCAGT 59.773 40.741 0.00 0.00 0.00 3.41
3793 5025 7.226918 TGTCTTAGGTCGTGATCTTATACTCAG 59.773 40.741 0.00 0.00 0.00 3.35
3794 5026 7.012138 GTGTCTTAGGTCGTGATCTTATACTCA 59.988 40.741 0.00 0.00 0.00 3.41
3795 5027 7.354257 GTGTCTTAGGTCGTGATCTTATACTC 58.646 42.308 0.00 0.00 0.00 2.59
3796 5028 6.262720 GGTGTCTTAGGTCGTGATCTTATACT 59.737 42.308 0.00 0.00 0.00 2.12
3797 5029 6.262720 AGGTGTCTTAGGTCGTGATCTTATAC 59.737 42.308 0.00 0.00 0.00 1.47
3798 5030 6.363065 AGGTGTCTTAGGTCGTGATCTTATA 58.637 40.000 0.00 0.00 0.00 0.98
3799 5031 5.202004 AGGTGTCTTAGGTCGTGATCTTAT 58.798 41.667 0.00 0.00 0.00 1.73
3800 5032 4.597004 AGGTGTCTTAGGTCGTGATCTTA 58.403 43.478 0.00 0.00 0.00 2.10
3801 5033 3.432378 AGGTGTCTTAGGTCGTGATCTT 58.568 45.455 0.00 0.00 0.00 2.40
3802 5034 3.088789 AGGTGTCTTAGGTCGTGATCT 57.911 47.619 0.00 0.00 0.00 2.75
3803 5035 3.870633 AAGGTGTCTTAGGTCGTGATC 57.129 47.619 0.00 0.00 0.00 2.92
3804 5036 4.342359 AGTAAGGTGTCTTAGGTCGTGAT 58.658 43.478 0.00 0.00 36.27 3.06
3805 5037 3.755378 GAGTAAGGTGTCTTAGGTCGTGA 59.245 47.826 0.00 0.00 36.27 4.35
3806 5038 3.425892 CGAGTAAGGTGTCTTAGGTCGTG 60.426 52.174 0.00 0.00 37.82 4.35
3807 5039 2.746362 CGAGTAAGGTGTCTTAGGTCGT 59.254 50.000 0.00 0.00 37.82 4.34
3808 5040 2.746362 ACGAGTAAGGTGTCTTAGGTCG 59.254 50.000 12.46 12.46 42.69 4.79
3809 5041 3.181512 CGACGAGTAAGGTGTCTTAGGTC 60.182 52.174 0.00 0.00 36.27 3.85
3810 5042 2.746362 CGACGAGTAAGGTGTCTTAGGT 59.254 50.000 0.00 0.00 36.27 3.08
3811 5043 2.746362 ACGACGAGTAAGGTGTCTTAGG 59.254 50.000 0.00 0.00 36.27 2.69
3812 5044 3.683822 AGACGACGAGTAAGGTGTCTTAG 59.316 47.826 0.00 0.00 36.27 2.18
3813 5045 3.434641 CAGACGACGAGTAAGGTGTCTTA 59.565 47.826 0.00 0.00 34.67 2.10
3814 5046 2.225963 CAGACGACGAGTAAGGTGTCTT 59.774 50.000 0.00 0.00 34.67 3.01
3815 5047 1.805345 CAGACGACGAGTAAGGTGTCT 59.195 52.381 0.00 0.00 37.17 3.41
3816 5048 1.802960 TCAGACGACGAGTAAGGTGTC 59.197 52.381 0.00 0.00 0.00 3.67
3817 5049 1.888215 TCAGACGACGAGTAAGGTGT 58.112 50.000 0.00 0.00 0.00 4.16
3818 5050 2.983402 TTCAGACGACGAGTAAGGTG 57.017 50.000 0.00 0.00 0.00 4.00
3819 5051 3.317430 ACTTTTCAGACGACGAGTAAGGT 59.683 43.478 0.00 0.00 0.00 3.50
3820 5052 3.898529 ACTTTTCAGACGACGAGTAAGG 58.101 45.455 0.00 0.00 0.00 2.69
3821 5053 4.613448 CAGACTTTTCAGACGACGAGTAAG 59.387 45.833 0.00 0.00 0.00 2.34
3822 5054 4.534168 CAGACTTTTCAGACGACGAGTAA 58.466 43.478 0.00 0.00 0.00 2.24
3823 5055 3.608707 GCAGACTTTTCAGACGACGAGTA 60.609 47.826 0.00 0.00 0.00 2.59
3824 5056 2.859032 GCAGACTTTTCAGACGACGAGT 60.859 50.000 0.00 0.00 0.00 4.18
3825 5057 1.716581 GCAGACTTTTCAGACGACGAG 59.283 52.381 0.00 0.00 0.00 4.18
3826 5058 1.066454 TGCAGACTTTTCAGACGACGA 59.934 47.619 0.00 0.00 0.00 4.20
3827 5059 1.487482 TGCAGACTTTTCAGACGACG 58.513 50.000 0.00 0.00 0.00 5.12
3828 5060 2.607635 TGTTGCAGACTTTTCAGACGAC 59.392 45.455 0.00 0.00 0.00 4.34
3829 5061 2.899976 TGTTGCAGACTTTTCAGACGA 58.100 42.857 0.00 0.00 0.00 4.20
3830 5062 3.248363 TCATGTTGCAGACTTTTCAGACG 59.752 43.478 0.00 0.00 0.00 4.18
3831 5063 4.818534 TCATGTTGCAGACTTTTCAGAC 57.181 40.909 0.00 0.00 0.00 3.51
3832 5064 4.260743 CGTTCATGTTGCAGACTTTTCAGA 60.261 41.667 0.00 0.00 0.00 3.27
3833 5065 3.970610 CGTTCATGTTGCAGACTTTTCAG 59.029 43.478 0.00 0.00 0.00 3.02
3834 5066 3.376859 ACGTTCATGTTGCAGACTTTTCA 59.623 39.130 0.00 0.00 0.00 2.69
3835 5067 3.952535 ACGTTCATGTTGCAGACTTTTC 58.047 40.909 0.00 0.00 0.00 2.29
3836 5068 4.104776 CAACGTTCATGTTGCAGACTTTT 58.895 39.130 0.00 0.00 42.34 2.27
3837 5069 3.694734 CAACGTTCATGTTGCAGACTTT 58.305 40.909 0.00 0.00 42.34 2.66
3838 5070 3.338818 CAACGTTCATGTTGCAGACTT 57.661 42.857 0.00 0.00 42.34 3.01
3846 5078 1.659794 GGGCTGCAACGTTCATGTT 59.340 52.632 0.00 0.00 0.00 2.71
3847 5079 2.616330 CGGGCTGCAACGTTCATGT 61.616 57.895 0.00 0.00 0.00 3.21
3848 5080 1.851021 TTCGGGCTGCAACGTTCATG 61.851 55.000 14.05 0.00 0.00 3.07
3849 5081 1.169661 TTTCGGGCTGCAACGTTCAT 61.170 50.000 14.05 0.00 0.00 2.57
3850 5082 1.377366 TTTTCGGGCTGCAACGTTCA 61.377 50.000 14.05 0.00 0.00 3.18
3851 5083 0.933047 GTTTTCGGGCTGCAACGTTC 60.933 55.000 14.05 0.00 0.00 3.95
3852 5084 1.065109 GTTTTCGGGCTGCAACGTT 59.935 52.632 14.05 0.00 0.00 3.99
3853 5085 2.719354 GTTTTCGGGCTGCAACGT 59.281 55.556 14.05 0.00 0.00 3.99
3854 5086 2.426752 CGTTTTCGGGCTGCAACG 60.427 61.111 13.80 13.80 39.94 4.10
3864 5096 0.110238 CATGTGCTGACCCGTTTTCG 60.110 55.000 0.00 0.00 43.67 3.46
3865 5097 0.240945 CCATGTGCTGACCCGTTTTC 59.759 55.000 0.00 0.00 0.00 2.29
3866 5098 0.179004 TCCATGTGCTGACCCGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
3867 5099 0.179004 TTCCATGTGCTGACCCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
3868 5100 0.038166 ATTCCATGTGCTGACCCGTT 59.962 50.000 0.00 0.00 0.00 4.44
3869 5101 0.908910 TATTCCATGTGCTGACCCGT 59.091 50.000 0.00 0.00 0.00 5.28
3870 5102 1.875514 CATATTCCATGTGCTGACCCG 59.124 52.381 0.00 0.00 0.00 5.28
3871 5103 1.610522 GCATATTCCATGTGCTGACCC 59.389 52.381 0.00 0.00 43.11 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.