>input_sequence_41586
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----------------------------------------------ATGGACAAAACTTCTCATGGCCTTGGATTTGGTG
ATAGCATCAACTCGTTAAACACTTGTCATTACCAGAGCTCAGTCCAACATACTGCTCAGCATAGAGGCACTACACTTGAT
TCCACATCATACTCCAGCTTTTCATTCACTAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATGGCGGGAGCAGAAGG
TACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGTTCATCTGACAATAGCAAAGTAAGCTCTGCCACAG
CTTGTGCAATGTCTCCGTGCTCGCTAAAGGAGGCTGATGAGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCC
CTTGGCAATGATGTTGCACACTTCCAAAGGAAATCCTCTGCTGGTTTGGTGGCCAAATCTCCTAAACTGGATCTTCAGTT
GAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAATATGGTGTCACCAAATATTCATGATGGCTTGGACA
TACCAGTGACCTATTCATTACCAGCCATTATAGGGAATGGGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGATT
TCATCATCATATGCGTCTGAAGCAACATATGCCTTCCCATTTTCGAAGATACCCAGACAAGAGAATGGTACTTTGTCTTC
GCCAGTCATATCGTCAACTCTGCCAGCAAGTGTGAAGAGCTCGGTTGCCTGTACTTCGGTGGTAACTAACCCTCAGCAGC
GCAATCTTAACACTAAAACCTGCCAGTTCCCTGGATGTGGGAAAGGGGCAAGAGGTGCATCAGGGCATTGCATAGCCCAT
GGTGGTGGTAGGCGATGCCAGAAACCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGCAAGGCCCATGGCGG
AGGGAGGAGATGCGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGGCGCACCGACCACTGCATTGCCCATGGTGGTGGCC
GCCGGTGCAGTAATGATGGCTGCTCCCGTGCTGCCCGAGGAAGATCTGGCTTATGCATCAGGCATGGAGGTGGAAAAAGG
TGTCAGCAAGACAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGGAGGCGTTGCCA
ATTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAGGCGCACGGTGGAGGCAAGCGCTGCACTTTCT
TGGGCTGTACCAAAGGAGCTGAAGGCAGCACCCCTTACTGCAAGGGCCACGGAGGAGGCAAGCGCTGCTTGTTTGAGGGT
GGTGGAGTGTGCCCCAAGAGCGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGGGAAGAGGTGCGCTATTTC
TGATTGCACCAAGAGTGCTAGAGGGCGGACGGAGTACTGTGTGCGCCATGGTGGTGGCAAGAGATGCAGGTTCGACGGCT
GTGTGAAGAGTGCGCAGGGGAGCACTGATTTCTGCAAGGCGCACGGGGGAGGCAAGCGCTGCTCATGGGGCCTGCCGGAC
TCGAGCTTCGGTATTGGCACAGAGCAGTGTGATAAATTTGCTCGCAGCAAGACTGGCCTCTGTTCAGCTCACACCGCTCT
AGTCCAGGACCACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTGATCCACCACTTCGCCACAGATGTTAAACCCGACG
AGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTTCGATGCAGTCGGAGCCTCCATTGCCGGAGGGCAGGGTGCAT
GGCGGCGGGCTGCTGGCGCTGCTTTCTCGCGGCGGAAACCACACAGGCCCTGTTGGTAACTCGGAGAACGGCGCTTCTGT
CATGATGGCGTGGATGTGA-------------------------------------------------------------
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----
>chr3B_1_TraesCS3B01G254100
GTTATAAGATAATGGGGTGCTGGTATTCAAATAAACAACAGATGACAAATGTTTAATGCAGTTGGAACTGCAATATTGAA
TTACACCTGGCCATCTATAGGGTCTAAGATTTGTTGTCCCCTCAACTGATATAGTACATGTGTAATCAATCTTTCTGATC
TTTGATCTGTGTAGGCACTTACAGATCAACAAATAAAAATGATACATATAGACTCATCTCAAAACAATGCTATGCAATGT
TATAATCTTATACTCCCTCCGTCTCGAATTACTTGTCTTACATTTGTCTAGATACGGATGTATCTAGACACGTTTTAGTG
TTTGATACATCCGTATC-----AAATCTAAGACAAGTAATTTGGGACGGAGGTACTAATATCTTGAGAGAATATGATTAT
AAAAGCTAATTATTGAAGTCACTACAAAATTCTAAACAGAGTCTGTTAAATTTACAAGTTGAACGGTTTAGCATTAGGGT
AAACCAACATTAGTTTGTTTTGAATTATAAAGGCACCGACAATTCTAGGATCTGTTGATCATGACAGAAGTGGACATGTC
ATGACTGTGCTCTCCTTTTAGTAGATAGCTGCTCCTGGTTGTGGTCTCCTTTTCTCTTTGTGTGCAATTTTTATGACCCT
TTAATGTTAAGTAGCCTTTTATGGATCTATTTTTATTTTTGCTGCATGAGCTTTGTAGTTGAGACTTCCTAGATTCTCAC
CTCATATTTTTTTA-CTAATCAGCAGGATCATCACTTTCTGTTTGGCCTGAACTGTGGAAGTTTCTAAGTAGAAACTGAG
GGTCAGTTCAAAACTTCATCCCACTCACCCCATACATACTGGCGAGAAATGGATCGTGATGATGTATCTGGCTTTGTTAG
CGGGGGTTGCAAGCTGTTCTGAGTTTTCTAACCTAGTAGAAGTTAATAAATAAAGTTATGATACCAGGAAGTCAGTCAAC
TGGTGGTTCTTTTCATTTACTAATTGGTTGATGTTTCCGAATTGGAATGGACAAAACTTCTCATGGCCTTGGATTTGGTG
ATAGCATCAACTCGTTAAACACTTGTCATTACCAGAGCTCAGTCCAACATACTGCTCAGCATAGAGGCACTACACTTGAT
TCCACATCATACTCCAGCTTTTCATTCACTAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATGGCGGGAGCAGAAGG
TACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGTTCATCTGACAATAGCAAAGTAAGCTCTGCCACAG
CTTGTGCAATGTCTCCGTGCTCGCTAAAGGAGGCTGATGAGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCC
CTTGGCAATGATGTTGCACACTTCCAAAGGAAATCCTCTGCTGGTTTGGTGGCCAAATCTCCTAAACTGGATCTTCAGTT
GAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAATATGGTGTCACCAAATATTCATGATGGCTTGGACA
TACCAGTGACCTATTCATTACCAGCCATTATAGGGAATGGGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGATT
TCATCATCATATGCGTCTGAAGCAACATATGCCTTCCCATTTTCGAAGATACCCAGACAAGAGAATGGTACTTTGTCTTC
GCCAGTCATATCGTCAACTCTGCCAGCAAGTGTGAAGAGCTCGGTTGCCTGTACTTCGGTGGTAACTAACCCTCAGCAGC
GCAATCTTAACACTAAAACCTGCCAGTTCCCTGGATGTGGGAAAGGGGCAAGAGGTGCATCAGGGCATTGCATAGCCCAT
GGTGGTGGTAGGCGATGCCAGAAACCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGCAAGGCCCATGGCGG
AGGGAGGAGATGCGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGGCGCACCGACCACTGCATTGCCCATGGTGGTGGCC
GCCGGTGCAGTAATGATGGCTGCTCCCGTGCTGCCCGAGGAAGATCTGGCTTATGCATCAGGCATGGAGGTGGAAAAAGG
TGTCAGCAAGACAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGGAGGCGTTGCCA
ATTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAGGCGCACGGTGGAGGCAAGCGCTGCACTTTCT
TGGGCTGTACCAAAGGAGCTGAAGGCAGCACCCCTTACTGCAAGGGCCACGGAGGAGGCAAGCGCTGCTTGTTTGAGGGT
GGTGGAGTGTGCCCCAAGAGCGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGGGAAGAGGTGCGCTATTTC
TGATTGCACCAAGAGTGCTAGAGGGCGGACGGAGTACTGTGTGCGCCATGGTGGTGGCAAGAGATGCAGGTTCGACGGCT
GTGTGAAGAGTGCGCAGGGGAGCACTGATTTCTGCAAGGCGCACGGGGGAGGCAAGCGCTGCTCATGGGGCCTGCCGGAC
TCGAGCTTCGGTATTGGCACAGAGCAGTGTGATAAATTTGCTCGCAGCAAGACTGGCCTCTGTTCAGCTCACACCGCTCT
AGTCCAGGACCACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTGATCCACCACTTCGCCACAGATGTTAAACCCGACG
AGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTTCGATGCAGTCGGAGCCTCCATTGCCGGAGGGCAGGGTGCAT
GGCGGCGGGCTGCTGGCGCTGCTTTCTCGCGGCGGAAACCACACAGGCCCTGTTGGTAACTCGGAGAACGGCGCTTCTGT
CATGATGGCGTGGATGTGAGTGGGCGGACATTCTCATCAAGAATTGGTTGCTTCAAGTTTTGATCTGTTTCCAGAGCTAA
TGCTGTGA-----------TCCACATTTCACCAATTGTTGTCCTAGTCGTTTGGAAGTGATAGGGGACATATATCCTCCG
TGTAGAATAAATAAGGGAGAGCGTTGTGGGATTCTCTGTTATTGTAATTAATTAATTATTAATGTCGTCAAACTGCCCTT
GCTTTGTGTTTATTACAATATATATGTAGTCTGATACTGCTTCACATTTCCTACTTGGATGTCATCTCTCCGCAGTTTGC
TTTCCTTCGTGTTTCTGGTAATAGTGCAGCAGGTAGTATAAT-TTTTTGG--------CGGGTAGAAGTACGTCGTCTAT
TGATCGGATGAGGGTTATTTGGTTATCGATTATTCATCAGATAATTCTCTTTTTTTTTGCGAGTCATCGGATAATTCTCT
GTCGCC-------ATGAACGTTGATGCACA-TGTCATTGCTAGAAACTCTATACCAACCAAAACACCAACCAAAGA----
--------------------------------------------------------------------------------
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--------------------------------------------------------------GACCCTGGGAATCTGACT
TCTAGGTGGTGGTTTCCTCCAGAAATTCCATATAGGCGTCCTGCGCCAATGTCAAACGCA-----------ACCTCGATT
GCACTGGTTCTTCCTTAACCAGCACGCAACATGAATGATCTCCGAAAAGGAAAAGGAGATGATATGCAGTTAACTCAAGA
GTAAAGGTTAATATGCACATGTAGCGACCAGATCTCAGACAGGGATCGGTAATGCTGATACGCGCAGTACTTGAAGAATT
TATAATAGAGTAGCAATCACACACTTATTACATTGAATGTCTCAAAAGAGAACTTATTACAATAAATATGGCTTAAGGCC
ATCTAATAACGATAACAGCGGAAAGCTTGGAAGATAAGTGAGTCCATCAACTCCAACGACATCACTGAGTATAAGATCAC
GACCTAAGACACCTTACTCGTCGTCTGAAAAGTCTGCAACATGAACGTTGCAGCCCGAAAACGGGTCAGCACATGGAATA
TGCT
>chr3D_1
GTTATAAGATAATGTGGTGCTGGTATTCAAATAAACAACAGATGGCAAATGTTTAATACAGTTGGAACTGCAATATTGAA
TTACACCTGGCCATCTATAGGTTCTGAGATTTGTTGTCCCCTCAGCTGATATAGTACATGTGTAATCAATCTTTCTGATC
TTTGATCTGTGTAGGCACTTACAGATCAACAAATAAAAACGGTACATATAGACTCATCTCAAAACAATGCTATGCAATGT
TATAATCTTATACTTCCTCCGTCCCGAATTACTTGTCTTACATTTGTCTAGATACGAATGTATCTAGACAGGTTTTAGTG
TTAGATACATCCGTATCTAGACAAATCTAAGACAGGTAATTTGGGACGGAGGTACTAATATCTTGAGAGAATATGATTAT
AAAAGCTAACTATTGAAGTCACTACAAAATTATAAACAGAGTCTGTTAAATTTACAAGTTGAAAGATTTAGCATTAGTGT
AAACCAACATTATTTTGTTTTGAATTATAAAGGCACCGACAATTCTAAGATCTCTTGATCATGACAGAAGTGGACATGTC
ATGACTGTGCTCTCCTTTTAGTAGATAGCTGCTCCTGGTTGTGGTCTTCTTTTCCCTTTGTATGCAATTTTTATGACCCT
TTAATGTTAAGTAGCCTTTTATGGATCTCTTTTTACTTTTGCTGCATGAGCTTTGTAGTTGAGACTTCCTATGTTCTCAT
CTCATATATTTTTTGCTAATCAGCAGGATCATCACCTTCTGTTTGGCCTGAACTGTGGAAGTTTCTAAGTAGAAACTGAG
GGTCAGTTCAAAACTTCATCCCACTCACCCCATACATACTGGCGAGAAATGGACCGTGATGATGTATCTGGCTTTGTTAG
CGGGGGTTGCAAGCTGTTCTGAGTTTTCTAACCTAGTAGAAGTTCATAAATAAAGTTATGATACCAGGAAGTCAGTCAAC
TGGTGGTTCTTTTCATTTACTAATTGGTTGATGTTTCCGAATTGGAATGGACAAAACTTCTCATGGCCTTGGATTTGGTG
ATAGCATCAACTCGTTAAACACTTCTCAGTACCAGAGTTCAGTCCAACATACTGCTCAGCATAGAGACACTACACTTGAT
TCCACATCATACTCCAGCTTTTCATTCACTAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATGGCGGGAGCAGAAGG
TACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGTTCATCTGACGATAGCAAAGTAAGCTCTGCCACAG
CTTGTGCAATGTCTCCATGCTCGCTAAAGGAGGCTGATGAGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCC
CTTGGCAATGATGTTGCACACTTCCAACGGAAATCCTCTGCTGGTTTGGTGGCCAAATCTCCTAAACTGGATCTTCAGTT
GAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAATATGGTGTCACCAAATATTCATGATGGCTTGGACA
TACCAGTGACCTATTCATTACCAGCCATTATAGGGAATGGGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGGTT
TCATCATCATATGCGTCTGAAGCAACATATGCCTTTCCATTTTCGAAGATACCCAGACAAGAGAATGGTACTTTGTCTTC
GCCAGTCATATCGTCAACTATGCCAGCAAGTGTGAAGAGCTCGGTTGCCTGTACTTCGGTGGTAACTAACCCTCAGCAGC
GCAATCTTAACACTAAAACCTGCCAATTCCCTGGATGTGGGAAAGGGGCAAGAGGTGCATCAGGGCATTGCATAGCCCAT
GGTGGTGGCAGGCGATGCCAGAAACCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGCAAGGCCCATGGTGG
AGGGAGGAGATGTGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGGCGCACCGACCACTGCATTGCCCATGGCGGTGGCC
GCCGGTGCAGTAATGATGGCTGCTCCCGTGCTGCCCGAGGAAGATCTGGCTTATGCATCAGGCATGGAGGTGGAAAAAGA
TGTCAGCAGGAGAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGGAGGCGTTGCCA
GTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAGGCGCATGGTGGAGGCAAGCGCTGCACTTTCT
TGGGCTGTACCAAAGGAGCTGAAGGCAGCACCCCTTACTGCAAGGGCCACGGAGGAGGCAAGCGCTGCTTATTTGAGGGT
GGTGGAGTGTGCCCGAAGAGTGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGGGAAGAGGTGCGCTATTTC
TGATTGCACTAAGAGTGCTAGAGGGCGGACGGAGTACTGTGTGCGCCATGGTGGTGGCAAGAGATGCAGGTTCGACGGCT
GTGTGAAGAGTGCACAGGGGAGCACTGATTTCTGCAAGGCGCACGGGGGAGGCAAGCGCTGCTCATGGGGCCTGCCGGAC
TCGAGCTTCGGTATTGGCACAGAGCAGTGTGATAAATTTGCTCGCAGCAAGACTGGCCTCTGTTCAGCTCACACCGCTCT
AGTCCAGGACCACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTGATCCACCACTTCGCCACAGATGTTAAACCCGACG
AGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTTCGATGCAGTCGGAGCCTCCATTGCCGGAGGGCAGGGTGCAT
GGCGGCGGGCTGCTGGCGCTGCTTTCTCGCGGCGGAAACCACACAGGCCCTGTTGGTAACTTGGAGAACGGCGCCTCTGT
CATGATGGCGTGGATGTGAGTGGGCGGACATTCTCATCAAGAATTGGTTGCTTCAAGTTTTGATCTGTTTCCAGAGCTAA
TGCTGTGGCGGGATGAAGTTCCACATTTCACCAATTGTTGTCCTAGTTGTTTGGAAGTGGTA--GGACATATATCCTCCG
TGTAGAATAAATAAGGGAGAGCGTTGTGGGCTTCTCTGTTATTGTAATTAATTA---ATTAATGTCGTCAAACTGCCCTT
GCTTTGTGTTTATTACAGTTTGTGTAA--TCTGATACTATTTCACACTTCCTACTTGGATGTCATCTCTTCGCTGTTTGC
TTTGCTTTGTGTTTCTGGTAATAGTGCAGCATGTAGTACGATATTTTTGG--------TGGGTAGAAGTCTGTCTTATAT
TGATCGGATGAGGGTTATTTTGTTATCGATTATTCATCAGATAATTCTTCTTTTTGC--CGAGTCATCAGATAATTCTCA
GTCGCGTCAAGAGATGAATGTTGATGCATA-TATCATTTCTAGAAACTCTCTAGATTTAGTACCATGAATGTCAAGAGAA
GAATGTTGATGCGCATATCATTGCTAGAATCTCTCTAGAT-TTTTTTGGAACTTGTGGCACAC---TCAAATCAAGTACT
TGTTACATCACTGACAAGTTCAGCTAGGATAATCTACGAAGGATCACCCTCATCCTCCCAAGAAACTACATAAC------
--------------------------------------------------------------------------------
-------------------TATAATCATAGGAAATCCTAGCAAGCTTGTGTGCCACCTTGTTCCCCTAAGTGAGAGGAAA
ATACCCAATACTTTGAGCTAAATGAAAACACTTCGTTCAGAGTAGTAGAATAA-AATGAAACTCTAGATTTAGTACCATG
AACATCAAGAGATGAATGTTGATGCCCATGTCATTGCTAGAATTTTCTCAACAACAAAAAAATCGTTGCTAGAAACTCTC
TAGATTTAGTACCAGACCGCCATGTATGGC-TTTTGAGGCCCGGGCTACGTAAAATATGTTATCATTGATCAATAAAGCT
TGGGAGTTACGCTAAAAAAGAAG------------------------------AGATGTGAGGCAGGTTCCAGGGAAGCT
TGTGGTCAGGCAC----TAGCCAGGGTACCAAATGTTACAATTGTGTCGAATTATTGGGCTAGAGTTAGACTTGGAGTAT
ACGAAGGGTTAGATGTTTGAGTCTAACACGTGTTACAGGTCACTGTGGATAGCAGAAATAAACGACATAAGATCAGGCCT
GCCATGGCAAGGATGGCCGGAGCGCTGTTTGGTAGCCTTATCGTCAATCTGTATCATGTGATACATGATGATATGTGCCT
TGTAATTATGCTCCAGGGATTGGCCGCGATGGTGAACCTCATTAACAAAACATCACGTGTTCACATCTACCCCTTCCGTT
CCTAAATATAAGTCTTTCAGAGATTCCATCTGTTTCTAAATATAAGTTTTTCAAAGATTTCAATGAAGACTACAAACGGA
GCAAAATGAGTGAATCTACACTCTAAACTATGTCTATATACATATGTATGTAGTCCCTATTAGAATATCTAGAAAAACTT
ATATTTAGGAACAGAGGGAGTACTTTTCTGCAATGATCTATCACGTATTTTCTGATACCAACGACCCTGGGAATCTGACT
TCCAGGTGGTGGTTTCCTCCAGAAATTCCATATAGGCGTCCTGCACCAGTGTCAAACGCA-----------AC-------
----TGGTTCTTCCTTAACCAACACGCAACATGAATGATCCCCGAAAAGGAAAAGGAGATGTTATGCAGTTAACTCAAGA
GTAAAGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>chr3A_1
GTTATAAGATAATGTAGTGCTGGTATTCAAATAAACAACAGATGACAAATGTTTAATACAGTTGGAACTGCGATATTGAA
TTACACCT-GCCATCTATAGGGTCTGAGATTTGTTGTCCCCTCAACTGATATAGTACATGTGTAATCAATCTTTCTGATC
TTTGATCTGTGTAGGCACTTACAGATCAACAAATAAAAACGATAGATATAGACTCATCTCAAAACAATGTTATGCAATGT
TATAATCTTATACTCCCTCCGTCCTGAATTACTTGTCTTACATTTGTCTAGATACGGATGTATCTAGACACGTTTTAGTG
TTAGATACATCCGTATCTAGACAAATCTAAGAGAGGTAATTTGGGACGGAGGTACTAATATCTTGGGAGAATATGATTAT
GAAAGCTAACTATTGAAGTCACTACAAAATTATAAACAGAGTCTGTTAAATTTACGAGTTGAAAGATTTAGCATTAGGGT
AAACCAACATAATTTTGTTTTGAATTATAAAGACACCGACAATTCTAAGATATGTTGATCATGACAGAAGTGGACATGTC
ATGACTGTGCTCTCCTTTTAGTAGATAGCTGCTCCTGGTTGTGGTCTCCTTTTCCCTTTGTATGCAATTTTTATGACCCT
TTAATGTTAAGTAGCCTTTTATGGATCTCTTTTTACTTTTGCTGCATGAGCTTTGTAGTTGAGACTTCCTAGATTCTCAT
CTCATAT-TTTTTTGCTAATCAGCAGGATCATCACCTTCTGTTTGGCCTGAACTGTGGAAGTTTCTAAGTAGAAACTGAG
GGTCAGTTCAAAACTTCATCCCACTCACCCCATACATACTGGCGAGAAATGGATCGTGATGATGTATCTGGCTTTGTTAG
CGGGGGTTGCAAGCTGTTCTGAGTTTTCTAACCTAGTAGAAGTTCATAAATAAAGTTATGATACCAGGAAGTCAGTCAAC
TGGTGGTTCTTTTCATTTACTAATTGGTTGATGTTTCCGAATTGGAATGGACAAAACTTCTCATGGCCTTGGATTTGGTG
ATAGAATCAACTCGGTGAACACTTCTCATTACCAGAGTTCAGTTGAACATACTGCTCAGCATAGAGA---TACACTTGAT
TCCACATCATACTCCAGCTTTTCATTCACTAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATGGCGGGAGCAGAAGG
TACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGTTCATCTGACAATAGCAAAGTAAGCTCTGCCACAG
CTTGTGCAATGTCTCCATGCTCGCTAAAGGAGGCTGATGAGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCC
CTTGGCAATGATGTTGCACACTTCCAAAGGAAATCCTCTGCTGCTTTGGTGGCCAAATCTCCTAAACTGGATCTTCAGTT
GAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAATATGGTGTCACCAAATATTCATGATGGCTTGGACA
TACCAGTGACCTATTCATTACCAGCCATTATAGGGAATGGGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGGTT
TCATCATCATATGCGTCTGAAGCAACATATGCCTTTCCATTTTCGAAGATACCCAGACAAGAGAATGGTGCTTTAGCTTC
GCCAGTCATATCGTCAACTATGCCAGCAAGTGTGAAGAGCTCGGTTGCCTCTACTTCGGTGGTAACTAACCCTCAGCAGC
GCAATCTTAACACTAAAACCTGCCAGTTCCCTGGATGTGGGAAAGGGGCAAGAGGTGCATCAGGGCATTGCATAGCCCAT
GGTGGTGGCAGGCGATGCCAGAAACCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGCAAGGCCCATGGTGG
AGGGAGGAGATGTGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGGCGCACCGACCACTGCATTGCCCATGGCGGTGGCC
GCCGGTGCAGTAATGATGGCTGCTCCCGTGCTGCCCGAGGAAGATCTGGCTTATGCATCAGGCATGGAGGTGGAAAAAGG
TGTCAGCAGGAGAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGGAGGCGATGCCA
GTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAGGCGCATGGTGGAGGCAAGCGCTGCACTTTCT
TGGGCTGTACCAAAGGAGCTGAAGGCAGCACCCCTTACTGCAAGGGCCACGGAGGAGGCAAGCGCTGCTTATTTGAGGGT
GGTGGAGTGTGCCCGAAGAGTGTGCATGGCGGGACGCAGTACTGTGTTGCGCATGGTGGTGGGAAGAGGTGCGCTATTTC
CGATTGCACTAAGAGTGCTAGAGGGCGGACGGAGTACTGTGTGCGCCATGGTGGTGGCAAGAGATGCAGGTTCGACGGCT
GTGTGAAGAGTGCGCAGGGGAGCACTGATTTCTGCAAGGCGCACGGGGGAGGCAAGCGCTGCTCATGGGGCCTGCCGGAC
TCGAGCTTCGGTATTGGCACAGAGCAGTGTGATAAATTTGCTCGCAGCAAGACTGGCCTCTGTTCAGCTCACACCGCTCT
AGTCCAGGACCACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTGATCCACCACTTCGCCACAGATGTTAAACCGGACG
AGATGGAAATTGCTGCGGCAGTGAAGGTTGATCCTGTTTCGATGCAGTCGGAGCCTCCATTGCCGGAGGGCAGGGTGCAT
GGCGGCGGGCTGCTGGCGCTGCTTTCTCGCGGCGGAAACCACACAGGCCCTGTTGGTAACTCGGAGAACGGGGCCTCTGT
CATGATGGCGTGGATGTGAGTGGGCGGACATTCTCATCAAGAATTGGTTGCTTCAAGTTTTGATCTGTTTCCAGAGCTAA
TGCTGTGGCGGGATGAAGTTCAACATTTCACCAATTGTTGTCCTAGTTGTTTGGAAGTGGTA--GGACATATATCCTCCG
TGTAGAATAAATAAGGGAGAGCGTTGTGGGCTTCTCTGTTATTGTAATTAATTA---ATTAATGTCGTCAAACTGCCCTT
GCTTTGTGTTTATTACAATTTGTGTAA--TCTGATACTATTTCACAGTTCCTACTTGGATGTCGTCTCTTCGCTGTTTGC
TTTCCTTTGTGTTTCTGGTAATAGTGCAGCATGTAGTACGATATTTTTTGGTGGGTACTGGGTAGAAGTCTGTCCTATAT
TGGTCGGATGAGGGTTATTTGGTTATCGATTATTCATCAGATAATTCTCTTTTTTTTTGTGAGCCATCAGATAATTCTCA
GTCGCGTCAAGAGATGAATGTTGATGCATATTATCATTGCTAGAAACTCTCTAGATTTAGTACCATGAACGTCGAGAGAT
GAATGTTGATGCACATATCATTGCTAGAATCTCTCTAGATTTTTTCTGAAACCTGTGGCACACTATTCAAATCAAATACT
TGTTACATCACTAACAAGTTCAACTAGGATAATCTACGAAGGATCAG------CCTCCCAAGAAACTACAGCATTACTCC
CTCCGTTTCGAATTACTCGTCATAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATACCTGCGACAAG
TAATTCGAAACAGAGGGAGTAGAATCATAGGAATTCCTAGCAAACTTGTGTGCCACCTTGTTCCCCTAAGTGAGAGGAAA
AGGACAAATACTTTGAGCTAAATGAAAACACTT-GTTCAGAGTAGTAGAATAAGAATGAAACTCTAGATTTAGTACCATG
AACGTCAAGAGATGAATGTTGATGCCCATATATCAAA-----------------------------TGCTAGAAACTCTC
TAGATTTGGTACCAGACCGCCATGTATGGCTTTTGGAGGCCCGGGCTATGTAAAATATGTTATCATTGATCAATAAAGCT
CGGGAGTTTCGCTAAAAAAGAAGAGATGTTGCTTCAAAGAAAAAAGAAAGAAGAGATGTGAGGCAGGTTCCAGGGAAGCT
TGTGGCCAGGCACAAGATAGCCAGGGTACCAAATGTTACAATTGTGTCGAATTATTGGGCTAGAGTTAGACTTGGAGTAT
GCAAAGGGTTAGATGTTTGAGCCTAACAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CAACGACCCTGGGAATCTGACT
TCCAGGTGGTGGTTTCCTCCAGAAATTCCATATAGGCGTCCTGCACCAGTGTCAAACGAAACCTCTAGTGCAC-------
----TGGTTCTTCCTGAACCAACACGCAACATGAATGATCCCCGACAAGGAAAAGGAGATGATATGCAGTTAACTCAAGA
GTAAAGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>SNPs
--------------S------------------------------------------S----------------------
-------------------------S------------------------------------------------------
---------------------------------------S----------------------------------------
-----------------------S--------------------------------------------------------
--S-------------------------------S---------------------------------------------
---------S---------------------S-------------------------------S-S--------------
------------S----------------------------------S--------------------------------
------------------------------------------------------S------S------------------
----------------------------S------S-------------------------------------------S
-------S-----S---------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
------------------------S------------S----------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-----------------------------------S--------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------S--------------------------------------------------------------------S--
------------S-----------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------S--S--------------------------------------------------------------------
S-----------------------------------------------------S-------------------------
----------------------------------------------------------------------S---------
--------------S-----S-----------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------S---------------------------------------S-----------S--SS----------------
------------------------------S-----------------------SSS-----------------------
-------------------S-S-S-SSSS---------SS------S----------------------S---S------
-------S-----------------------S------SS------------------S----------SS---S-S---
--------------------------------------------------------------------S----------S
-----S------------S---------S---S-----------------S--SSSSSSSS-S--SS---SSS-SS----
--------------------------------------------------------------------------------
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--S-----------------------------------------S---S------------------------SSSSSSS
SSSS-----------------S------------------S---------------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_615
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---------------------------------CCTGGTTGTGGTCTCCTTTTCT-------------------------
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----
>reverse_2311
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTTTGAGGGT
GGTGGAGTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1297
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAG
CTTGTGCAATGTCTCCG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_2875
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTCTGT
CATGATGGCGTGGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_2410
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TGCGCTATTTC
TGATTGCACC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_4685
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GCCAATGTCAAACGCAACCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
