Multiple sequence alignment - TraesCS3B01G247000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G247000 chr3B 100.000 2969 0 0 1 2969 392975563 392978531 0.000000e+00 5483.0
1 TraesCS3B01G247000 chr3B 97.368 304 8 0 2665 2968 808661175 808660872 4.390000e-143 518.0
2 TraesCS3B01G247000 chr3B 90.909 176 14 2 2428 2601 808661352 808661177 4.950000e-58 235.0
3 TraesCS3B01G247000 chr3B 78.528 163 12 16 2731 2888 10409478 10409622 5.270000e-13 86.1
4 TraesCS3B01G247000 chr3B 89.062 64 7 0 567 630 762831533 762831596 2.450000e-11 80.5
5 TraesCS3B01G247000 chr3D 94.065 1668 41 6 804 2429 297912174 297910523 0.000000e+00 2479.0
6 TraesCS3B01G247000 chr3D 88.889 342 17 6 236 563 297912504 297912170 4.610000e-108 401.0
7 TraesCS3B01G247000 chr3D 92.241 116 8 1 120 234 297922293 297922178 2.370000e-36 163.0
8 TraesCS3B01G247000 chr3A 93.640 1651 51 16 820 2429 395555512 395553875 0.000000e+00 2418.0
9 TraesCS3B01G247000 chr2B 90.036 562 33 7 2429 2967 800066474 800065913 0.000000e+00 706.0
10 TraesCS3B01G247000 chr2B 94.545 110 5 1 1 109 254088361 254088470 5.090000e-38 169.0
11 TraesCS3B01G247000 chr2D 81.081 259 38 9 135 383 66833922 66833665 2.330000e-46 196.0
12 TraesCS3B01G247000 chr2D 83.333 72 10 2 2822 2891 139352369 139352298 6.870000e-07 65.8
13 TraesCS3B01G247000 chr5B 94.545 110 5 1 1 109 463247307 463247198 5.090000e-38 169.0
14 TraesCS3B01G247000 chr5B 74.708 257 54 5 567 813 507984910 507985165 1.460000e-18 104.0
15 TraesCS3B01G247000 chr6B 91.200 125 7 2 1 121 415638245 415638369 1.830000e-37 167.0
16 TraesCS3B01G247000 chr6B 93.636 110 6 1 1 109 270270941 270270832 2.370000e-36 163.0
17 TraesCS3B01G247000 chr6B 88.235 68 8 0 567 634 171808916 171808849 6.820000e-12 82.4
18 TraesCS3B01G247000 chr5A 91.129 124 7 1 1 120 670480364 670480241 6.580000e-37 165.0
19 TraesCS3B01G247000 chr6D 93.578 109 7 0 1 109 450311234 450311342 2.370000e-36 163.0
20 TraesCS3B01G247000 chr6D 92.174 115 8 1 1 115 300620643 300620756 8.520000e-36 161.0
21 TraesCS3B01G247000 chr6D 85.542 83 12 0 2529 2611 462227765 462227683 1.470000e-13 87.9
22 TraesCS3B01G247000 chr4A 91.525 118 6 4 1 114 636938770 636938887 3.060000e-35 159.0
23 TraesCS3B01G247000 chr5D 90.083 121 10 2 1 120 40192794 40192675 3.960000e-34 156.0
24 TraesCS3B01G247000 chr7A 89.855 69 7 0 561 629 199163403 199163471 4.080000e-14 89.8
25 TraesCS3B01G247000 chr2A 89.855 69 5 2 2822 2888 161645909 161645977 1.470000e-13 87.9
26 TraesCS3B01G247000 chr1B 85.333 75 11 0 560 634 662013541 662013615 8.820000e-11 78.7
27 TraesCS3B01G247000 chr1B 93.182 44 3 0 567 610 659084665 659084708 6.870000e-07 65.8
28 TraesCS3B01G247000 chr1B 93.182 44 3 0 567 610 659192477 659192520 6.870000e-07 65.8
29 TraesCS3B01G247000 chr1B 94.872 39 2 0 567 605 658971411 658971449 8.890000e-06 62.1
30 TraesCS3B01G247000 chr1B 94.872 39 2 0 567 605 659004998 659005036 8.890000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G247000 chr3B 392975563 392978531 2968 False 5483 5483 100.000 1 2969 1 chr3B.!!$F2 2968
1 TraesCS3B01G247000 chr3D 297910523 297912504 1981 True 1440 2479 91.477 236 2429 2 chr3D.!!$R2 2193
2 TraesCS3B01G247000 chr3A 395553875 395555512 1637 True 2418 2418 93.640 820 2429 1 chr3A.!!$R1 1609
3 TraesCS3B01G247000 chr2B 800065913 800066474 561 True 706 706 90.036 2429 2967 1 chr2B.!!$R1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.041833 AGCTAGGCAGAGGAGGACAA 59.958 55.0 0.0 0.0 0.0 3.18 F
325 326 0.253630 TGCTTCTATTCCCCACCCCT 60.254 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1270 1.504647 CGGCGGACGCTACTATGAGA 61.505 60.0 16.72 0.0 41.60 3.27 R
2237 2299 2.028112 TGTGAGGAAGGACAGCACATAC 60.028 50.0 0.00 0.0 34.85 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
90 91 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
91 92 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
92 93 4.505742 CCTCTAGGGCATATTTCCTTCACC 60.506 50.000 0.00 0.00 34.75 4.02
93 94 2.755952 AGGGCATATTTCCTTCACCC 57.244 50.000 0.00 0.00 36.04 4.61
94 95 1.217942 AGGGCATATTTCCTTCACCCC 59.782 52.381 0.00 0.00 36.47 4.95
95 96 1.704641 GGCATATTTCCTTCACCCCC 58.295 55.000 0.00 0.00 0.00 5.40
109 110 3.700350 CCCCCTCTGGACCCCTCT 61.700 72.222 0.00 0.00 35.39 3.69
110 111 2.456840 CCCCTCTGGACCCCTCTT 59.543 66.667 0.00 0.00 35.39 2.85
111 112 1.690985 CCCCTCTGGACCCCTCTTC 60.691 68.421 0.00 0.00 35.39 2.87
112 113 1.394151 CCCTCTGGACCCCTCTTCT 59.606 63.158 0.00 0.00 0.00 2.85
113 114 0.689412 CCCTCTGGACCCCTCTTCTC 60.689 65.000 0.00 0.00 0.00 2.87
114 115 1.040339 CCTCTGGACCCCTCTTCTCG 61.040 65.000 0.00 0.00 0.00 4.04
115 116 0.323908 CTCTGGACCCCTCTTCTCGT 60.324 60.000 0.00 0.00 0.00 4.18
116 117 0.114560 TCTGGACCCCTCTTCTCGTT 59.885 55.000 0.00 0.00 0.00 3.85
117 118 0.533032 CTGGACCCCTCTTCTCGTTC 59.467 60.000 0.00 0.00 0.00 3.95
118 119 0.903454 TGGACCCCTCTTCTCGTTCC 60.903 60.000 0.00 0.00 0.00 3.62
119 120 0.615261 GGACCCCTCTTCTCGTTCCT 60.615 60.000 0.00 0.00 0.00 3.36
120 121 1.268066 GACCCCTCTTCTCGTTCCTT 58.732 55.000 0.00 0.00 0.00 3.36
121 122 1.624312 GACCCCTCTTCTCGTTCCTTT 59.376 52.381 0.00 0.00 0.00 3.11
122 123 1.624312 ACCCCTCTTCTCGTTCCTTTC 59.376 52.381 0.00 0.00 0.00 2.62
123 124 1.623811 CCCCTCTTCTCGTTCCTTTCA 59.376 52.381 0.00 0.00 0.00 2.69
124 125 2.354203 CCCCTCTTCTCGTTCCTTTCAG 60.354 54.545 0.00 0.00 0.00 3.02
125 126 2.354203 CCCTCTTCTCGTTCCTTTCAGG 60.354 54.545 0.00 0.00 36.46 3.86
126 127 2.563179 CCTCTTCTCGTTCCTTTCAGGA 59.437 50.000 0.00 0.00 44.10 3.86
127 128 3.367910 CCTCTTCTCGTTCCTTTCAGGAG 60.368 52.174 0.00 0.00 46.73 3.69
128 129 2.563179 TCTTCTCGTTCCTTTCAGGAGG 59.437 50.000 0.00 0.00 46.73 4.30
129 130 0.608640 TCTCGTTCCTTTCAGGAGGC 59.391 55.000 0.00 0.00 46.73 4.70
130 131 0.737715 CTCGTTCCTTTCAGGAGGCG 60.738 60.000 10.70 10.70 46.73 5.52
131 132 1.183030 TCGTTCCTTTCAGGAGGCGA 61.183 55.000 13.91 13.91 46.73 5.54
132 133 0.737715 CGTTCCTTTCAGGAGGCGAG 60.738 60.000 11.23 0.00 46.73 5.03
133 134 0.608640 GTTCCTTTCAGGAGGCGAGA 59.391 55.000 0.00 0.00 46.73 4.04
134 135 1.002087 GTTCCTTTCAGGAGGCGAGAA 59.998 52.381 0.00 0.00 46.73 2.87
135 136 1.573108 TCCTTTCAGGAGGCGAGAAT 58.427 50.000 0.00 0.00 40.06 2.40
136 137 1.208052 TCCTTTCAGGAGGCGAGAATG 59.792 52.381 0.00 0.00 40.06 2.67
137 138 1.065854 CCTTTCAGGAGGCGAGAATGT 60.066 52.381 0.00 0.00 37.67 2.71
138 139 2.275318 CTTTCAGGAGGCGAGAATGTC 58.725 52.381 0.00 0.00 0.00 3.06
139 140 1.266178 TTCAGGAGGCGAGAATGTCA 58.734 50.000 0.00 0.00 0.00 3.58
140 141 0.820226 TCAGGAGGCGAGAATGTCAG 59.180 55.000 0.00 0.00 0.00 3.51
141 142 0.179089 CAGGAGGCGAGAATGTCAGG 60.179 60.000 0.00 0.00 0.00 3.86
142 143 1.522580 GGAGGCGAGAATGTCAGGC 60.523 63.158 0.00 0.00 0.00 4.85
143 144 1.519719 GAGGCGAGAATGTCAGGCT 59.480 57.895 0.00 0.00 37.32 4.58
144 145 0.529555 GAGGCGAGAATGTCAGGCTC 60.530 60.000 9.05 9.05 40.96 4.70
145 146 1.522580 GGCGAGAATGTCAGGCTCC 60.523 63.158 0.00 0.00 0.00 4.70
146 147 1.219124 GCGAGAATGTCAGGCTCCA 59.781 57.895 0.00 0.00 0.00 3.86
147 148 0.391661 GCGAGAATGTCAGGCTCCAA 60.392 55.000 0.00 0.00 0.00 3.53
148 149 1.649664 CGAGAATGTCAGGCTCCAAG 58.350 55.000 0.00 0.00 0.00 3.61
149 150 1.741732 CGAGAATGTCAGGCTCCAAGG 60.742 57.143 0.00 0.00 0.00 3.61
150 151 0.622665 AGAATGTCAGGCTCCAAGGG 59.377 55.000 0.00 0.00 0.00 3.95
151 152 0.329596 GAATGTCAGGCTCCAAGGGT 59.670 55.000 0.00 0.00 0.00 4.34
152 153 0.329596 AATGTCAGGCTCCAAGGGTC 59.670 55.000 0.00 0.00 0.00 4.46
153 154 0.842030 ATGTCAGGCTCCAAGGGTCA 60.842 55.000 0.00 0.00 0.00 4.02
154 155 0.842030 TGTCAGGCTCCAAGGGTCAT 60.842 55.000 0.00 0.00 0.00 3.06
155 156 0.393537 GTCAGGCTCCAAGGGTCATG 60.394 60.000 0.00 0.00 0.00 3.07
156 157 0.547471 TCAGGCTCCAAGGGTCATGA 60.547 55.000 0.00 0.00 0.00 3.07
157 158 0.393537 CAGGCTCCAAGGGTCATGAC 60.394 60.000 17.91 17.91 0.00 3.06
171 172 5.359194 GGTCATGACCCTCTTCTAAATCA 57.641 43.478 31.37 0.00 45.68 2.57
172 173 5.363939 GGTCATGACCCTCTTCTAAATCAG 58.636 45.833 31.37 0.00 45.68 2.90
173 174 5.363939 GTCATGACCCTCTTCTAAATCAGG 58.636 45.833 15.31 0.00 0.00 3.86
174 175 3.914426 TGACCCTCTTCTAAATCAGGC 57.086 47.619 0.00 0.00 0.00 4.85
175 176 2.505819 TGACCCTCTTCTAAATCAGGCC 59.494 50.000 0.00 0.00 0.00 5.19
176 177 2.505819 GACCCTCTTCTAAATCAGGCCA 59.494 50.000 5.01 0.00 0.00 5.36
177 178 3.126453 ACCCTCTTCTAAATCAGGCCAT 58.874 45.455 5.01 0.00 0.00 4.40
178 179 3.137360 ACCCTCTTCTAAATCAGGCCATC 59.863 47.826 5.01 0.00 0.00 3.51
179 180 3.393941 CCCTCTTCTAAATCAGGCCATCT 59.606 47.826 5.01 0.00 0.00 2.90
180 181 4.504689 CCCTCTTCTAAATCAGGCCATCTC 60.505 50.000 5.01 0.00 0.00 2.75
181 182 4.305769 CTCTTCTAAATCAGGCCATCTCG 58.694 47.826 5.01 0.00 0.00 4.04
182 183 3.960755 TCTTCTAAATCAGGCCATCTCGA 59.039 43.478 5.01 0.00 0.00 4.04
183 184 4.590647 TCTTCTAAATCAGGCCATCTCGAT 59.409 41.667 5.01 0.00 0.00 3.59
184 185 4.263018 TCTAAATCAGGCCATCTCGATG 57.737 45.455 5.01 0.00 38.51 3.84
194 195 2.538512 CATCTCGATGGAATGAGCCA 57.461 50.000 0.00 0.00 43.23 4.75
202 203 3.947612 ATGGAATGAGCCATGAGACTT 57.052 42.857 0.00 0.00 46.62 3.01
203 204 2.995283 TGGAATGAGCCATGAGACTTG 58.005 47.619 0.00 0.00 31.66 3.16
204 205 2.295885 GGAATGAGCCATGAGACTTGG 58.704 52.381 0.00 0.00 37.31 3.61
205 206 2.295885 GAATGAGCCATGAGACTTGGG 58.704 52.381 0.00 0.00 34.66 4.12
207 208 1.067295 TGAGCCATGAGACTTGGGTT 58.933 50.000 9.13 0.00 44.68 4.11
208 209 1.425066 TGAGCCATGAGACTTGGGTTT 59.575 47.619 9.13 0.00 44.68 3.27
209 210 1.815003 GAGCCATGAGACTTGGGTTTG 59.185 52.381 9.13 0.00 44.68 2.93
210 211 0.890683 GCCATGAGACTTGGGTTTGG 59.109 55.000 0.00 0.00 34.66 3.28
211 212 0.890683 CCATGAGACTTGGGTTTGGC 59.109 55.000 0.00 0.00 0.00 4.52
212 213 0.890683 CATGAGACTTGGGTTTGGCC 59.109 55.000 0.00 0.00 0.00 5.36
221 222 2.959372 GGTTTGGCCCAGTTACGC 59.041 61.111 0.00 0.00 0.00 4.42
222 223 2.559330 GTTTGGCCCAGTTACGCG 59.441 61.111 3.53 3.53 0.00 6.01
223 224 1.962306 GTTTGGCCCAGTTACGCGA 60.962 57.895 15.93 0.00 0.00 5.87
224 225 1.227883 TTTGGCCCAGTTACGCGAA 60.228 52.632 15.93 0.00 0.00 4.70
225 226 0.606944 TTTGGCCCAGTTACGCGAAT 60.607 50.000 15.93 0.00 0.00 3.34
226 227 0.249676 TTGGCCCAGTTACGCGAATA 59.750 50.000 15.93 0.00 0.00 1.75
227 228 0.179094 TGGCCCAGTTACGCGAATAG 60.179 55.000 15.93 0.00 0.00 1.73
228 229 0.878961 GGCCCAGTTACGCGAATAGG 60.879 60.000 15.93 7.79 0.00 2.57
229 230 1.496403 GCCCAGTTACGCGAATAGGC 61.496 60.000 15.93 13.50 0.00 3.93
230 231 0.179094 CCCAGTTACGCGAATAGGCA 60.179 55.000 15.93 0.00 0.00 4.75
231 232 1.647346 CCAGTTACGCGAATAGGCAA 58.353 50.000 15.93 0.00 0.00 4.52
232 233 2.004017 CCAGTTACGCGAATAGGCAAA 58.996 47.619 15.93 0.00 0.00 3.68
233 234 2.417239 CCAGTTACGCGAATAGGCAAAA 59.583 45.455 15.93 0.00 0.00 2.44
234 235 3.485216 CCAGTTACGCGAATAGGCAAAAG 60.485 47.826 15.93 0.00 0.00 2.27
255 256 8.678199 CAAAAGGTTTATAAAGGAGAAGCTAGG 58.322 37.037 0.00 0.00 30.47 3.02
268 269 0.041833 AGCTAGGCAGAGGAGGACAA 59.958 55.000 0.00 0.00 0.00 3.18
279 280 4.697352 CAGAGGAGGACAACGAATTGATTT 59.303 41.667 0.00 0.00 39.30 2.17
282 283 4.827284 AGGAGGACAACGAATTGATTTGTT 59.173 37.500 3.96 3.96 43.34 2.83
314 315 4.080129 TCAGCTTCCCATCTTTGCTTCTAT 60.080 41.667 0.00 0.00 0.00 1.98
315 316 4.643784 CAGCTTCCCATCTTTGCTTCTATT 59.356 41.667 0.00 0.00 0.00 1.73
318 319 4.170468 TCCCATCTTTGCTTCTATTCCC 57.830 45.455 0.00 0.00 0.00 3.97
321 322 3.633986 CCATCTTTGCTTCTATTCCCCAC 59.366 47.826 0.00 0.00 0.00 4.61
322 323 3.366052 TCTTTGCTTCTATTCCCCACC 57.634 47.619 0.00 0.00 0.00 4.61
323 324 2.025321 TCTTTGCTTCTATTCCCCACCC 60.025 50.000 0.00 0.00 0.00 4.61
324 325 0.629058 TTGCTTCTATTCCCCACCCC 59.371 55.000 0.00 0.00 0.00 4.95
325 326 0.253630 TGCTTCTATTCCCCACCCCT 60.254 55.000 0.00 0.00 0.00 4.79
326 327 0.474614 GCTTCTATTCCCCACCCCTC 59.525 60.000 0.00 0.00 0.00 4.30
327 328 1.141185 CTTCTATTCCCCACCCCTCC 58.859 60.000 0.00 0.00 0.00 4.30
351 352 0.842635 GGATCCCTCTCATGCCTTGT 59.157 55.000 0.00 0.00 0.00 3.16
382 384 1.444836 CCCGACCTTTGTATTCGCAA 58.555 50.000 0.00 0.00 0.00 4.85
393 395 9.077885 ACCTTTGTATTCGCAATTTATATCCAT 57.922 29.630 0.00 0.00 0.00 3.41
405 407 9.520204 GCAATTTATATCCATATATGTTGGTGC 57.480 33.333 11.73 5.15 35.64 5.01
416 418 7.094634 CCATATATGTTGGTGCTAATCCAGTTC 60.095 40.741 11.73 0.00 36.28 3.01
420 422 2.972625 TGGTGCTAATCCAGTTCTTCG 58.027 47.619 0.00 0.00 0.00 3.79
502 517 3.933861 GGTAAGGATGACCAATGGAGT 57.066 47.619 6.16 0.00 40.46 3.85
567 582 2.880443 ACGGGTAGTGACCTAAGAACA 58.120 47.619 0.00 0.00 46.09 3.18
568 583 3.438183 ACGGGTAGTGACCTAAGAACAT 58.562 45.455 0.00 0.00 46.09 2.71
569 584 3.194968 ACGGGTAGTGACCTAAGAACATG 59.805 47.826 0.00 0.00 46.09 3.21
570 585 3.194968 CGGGTAGTGACCTAAGAACATGT 59.805 47.826 0.00 0.00 46.09 3.21
571 586 4.400251 CGGGTAGTGACCTAAGAACATGTA 59.600 45.833 0.00 0.00 46.09 2.29
572 587 5.658468 GGGTAGTGACCTAAGAACATGTAC 58.342 45.833 0.00 0.00 46.09 2.90
573 588 5.186409 GGGTAGTGACCTAAGAACATGTACA 59.814 44.000 0.00 0.00 46.09 2.90
574 589 6.295462 GGGTAGTGACCTAAGAACATGTACAA 60.295 42.308 0.00 0.00 46.09 2.41
575 590 7.328737 GGTAGTGACCTAAGAACATGTACAAT 58.671 38.462 0.00 0.00 43.16 2.71
576 591 7.277981 GGTAGTGACCTAAGAACATGTACAATG 59.722 40.741 0.00 1.63 43.16 2.82
577 592 6.173339 AGTGACCTAAGAACATGTACAATGG 58.827 40.000 0.00 2.10 0.00 3.16
578 593 5.938125 GTGACCTAAGAACATGTACAATGGT 59.062 40.000 0.00 5.61 0.00 3.55
579 594 5.937540 TGACCTAAGAACATGTACAATGGTG 59.062 40.000 14.66 0.00 0.00 4.17
580 595 4.700213 ACCTAAGAACATGTACAATGGTGC 59.300 41.667 0.00 0.00 0.00 5.01
581 596 4.943705 CCTAAGAACATGTACAATGGTGCT 59.056 41.667 0.00 0.00 0.00 4.40
582 597 6.112734 CCTAAGAACATGTACAATGGTGCTA 58.887 40.000 0.00 0.00 0.00 3.49
583 598 6.767902 CCTAAGAACATGTACAATGGTGCTAT 59.232 38.462 0.00 0.00 0.00 2.97
584 599 6.683974 AAGAACATGTACAATGGTGCTATC 57.316 37.500 0.00 0.00 0.00 2.08
585 600 5.994250 AGAACATGTACAATGGTGCTATCT 58.006 37.500 0.00 0.00 0.00 1.98
586 601 6.418101 AGAACATGTACAATGGTGCTATCTT 58.582 36.000 0.00 0.00 0.00 2.40
587 602 7.564793 AGAACATGTACAATGGTGCTATCTTA 58.435 34.615 0.00 0.00 0.00 2.10
588 603 7.712639 AGAACATGTACAATGGTGCTATCTTAG 59.287 37.037 0.00 0.00 0.00 2.18
589 604 6.291377 ACATGTACAATGGTGCTATCTTAGG 58.709 40.000 0.00 0.00 0.00 2.69
590 605 5.950544 TGTACAATGGTGCTATCTTAGGT 57.049 39.130 0.00 0.00 0.00 3.08
591 606 5.670485 TGTACAATGGTGCTATCTTAGGTG 58.330 41.667 0.00 0.00 0.00 4.00
592 607 4.844349 ACAATGGTGCTATCTTAGGTGT 57.156 40.909 0.00 0.00 0.00 4.16
593 608 4.517285 ACAATGGTGCTATCTTAGGTGTG 58.483 43.478 0.00 0.00 0.00 3.82
594 609 2.691409 TGGTGCTATCTTAGGTGTGC 57.309 50.000 0.00 0.00 0.00 4.57
595 610 1.209504 TGGTGCTATCTTAGGTGTGCC 59.790 52.381 0.00 0.00 0.00 5.01
596 611 1.209504 GGTGCTATCTTAGGTGTGCCA 59.790 52.381 0.00 0.00 37.19 4.92
597 612 2.280628 GTGCTATCTTAGGTGTGCCAC 58.719 52.381 0.00 0.00 37.19 5.01
598 613 1.905894 TGCTATCTTAGGTGTGCCACA 59.094 47.619 0.00 0.00 35.86 4.17
599 614 2.505407 TGCTATCTTAGGTGTGCCACAT 59.495 45.455 0.00 3.21 35.86 3.21
600 615 3.709141 TGCTATCTTAGGTGTGCCACATA 59.291 43.478 0.00 2.33 35.86 2.29
601 616 4.347876 TGCTATCTTAGGTGTGCCACATAT 59.652 41.667 0.00 0.00 35.86 1.78
602 617 4.692625 GCTATCTTAGGTGTGCCACATATG 59.307 45.833 0.00 0.00 35.86 1.78
603 618 5.511373 GCTATCTTAGGTGTGCCACATATGA 60.511 44.000 10.38 13.66 38.45 2.15
604 619 5.573380 ATCTTAGGTGTGCCACATATGAT 57.427 39.130 10.38 15.80 39.15 2.45
605 620 6.686484 ATCTTAGGTGTGCCACATATGATA 57.314 37.500 10.38 0.00 40.77 2.15
606 621 6.493189 TCTTAGGTGTGCCACATATGATAA 57.507 37.500 10.38 0.00 32.68 1.75
607 622 7.078249 TCTTAGGTGTGCCACATATGATAAT 57.922 36.000 10.38 0.00 32.68 1.28
608 623 7.517320 TCTTAGGTGTGCCACATATGATAATT 58.483 34.615 10.38 0.00 32.68 1.40
609 624 7.445096 TCTTAGGTGTGCCACATATGATAATTG 59.555 37.037 10.38 0.00 32.68 2.32
610 625 4.279169 AGGTGTGCCACATATGATAATTGC 59.721 41.667 10.38 3.21 35.86 3.56
611 626 4.279169 GGTGTGCCACATATGATAATTGCT 59.721 41.667 10.38 0.00 35.86 3.91
612 627 5.217393 GTGTGCCACATATGATAATTGCTG 58.783 41.667 10.38 0.00 34.08 4.41
613 628 5.008911 GTGTGCCACATATGATAATTGCTGA 59.991 40.000 10.38 0.00 34.08 4.26
614 629 5.239963 TGTGCCACATATGATAATTGCTGAG 59.760 40.000 10.38 0.00 0.00 3.35
615 630 4.763279 TGCCACATATGATAATTGCTGAGG 59.237 41.667 10.38 0.00 0.00 3.86
616 631 4.763793 GCCACATATGATAATTGCTGAGGT 59.236 41.667 10.38 0.00 0.00 3.85
617 632 5.335426 GCCACATATGATAATTGCTGAGGTG 60.335 44.000 10.38 0.00 0.00 4.00
618 633 5.182570 CCACATATGATAATTGCTGAGGTGG 59.817 44.000 10.38 0.00 35.49 4.61
619 634 5.999600 CACATATGATAATTGCTGAGGTGGA 59.000 40.000 10.38 0.00 0.00 4.02
620 635 6.657966 CACATATGATAATTGCTGAGGTGGAT 59.342 38.462 10.38 0.00 0.00 3.41
621 636 6.657966 ACATATGATAATTGCTGAGGTGGATG 59.342 38.462 10.38 0.00 0.00 3.51
622 637 4.776435 TGATAATTGCTGAGGTGGATGA 57.224 40.909 0.00 0.00 0.00 2.92
623 638 4.711399 TGATAATTGCTGAGGTGGATGAG 58.289 43.478 0.00 0.00 0.00 2.90
624 639 4.409901 TGATAATTGCTGAGGTGGATGAGA 59.590 41.667 0.00 0.00 0.00 3.27
625 640 3.278668 AATTGCTGAGGTGGATGAGAG 57.721 47.619 0.00 0.00 0.00 3.20
626 641 1.942776 TTGCTGAGGTGGATGAGAGA 58.057 50.000 0.00 0.00 0.00 3.10
627 642 1.482954 TGCTGAGGTGGATGAGAGAG 58.517 55.000 0.00 0.00 0.00 3.20
628 643 1.006400 TGCTGAGGTGGATGAGAGAGA 59.994 52.381 0.00 0.00 0.00 3.10
629 644 2.106566 GCTGAGGTGGATGAGAGAGAA 58.893 52.381 0.00 0.00 0.00 2.87
630 645 2.699846 GCTGAGGTGGATGAGAGAGAAT 59.300 50.000 0.00 0.00 0.00 2.40
631 646 3.134442 GCTGAGGTGGATGAGAGAGAATT 59.866 47.826 0.00 0.00 0.00 2.17
632 647 4.740334 GCTGAGGTGGATGAGAGAGAATTC 60.740 50.000 0.00 0.00 0.00 2.17
633 648 4.356436 TGAGGTGGATGAGAGAGAATTCA 58.644 43.478 8.44 0.00 0.00 2.57
634 649 4.161189 TGAGGTGGATGAGAGAGAATTCAC 59.839 45.833 8.44 0.74 32.37 3.18
635 650 4.360889 AGGTGGATGAGAGAGAATTCACT 58.639 43.478 8.44 6.67 33.49 3.41
636 651 4.782156 AGGTGGATGAGAGAGAATTCACTT 59.218 41.667 8.44 0.00 33.49 3.16
637 652 5.960811 AGGTGGATGAGAGAGAATTCACTTA 59.039 40.000 8.44 1.70 33.49 2.24
638 653 6.614906 AGGTGGATGAGAGAGAATTCACTTAT 59.385 38.462 8.44 6.31 33.49 1.73
639 654 7.127032 AGGTGGATGAGAGAGAATTCACTTATT 59.873 37.037 8.44 0.00 33.49 1.40
640 655 7.772757 GGTGGATGAGAGAGAATTCACTTATTT 59.227 37.037 8.44 0.00 33.49 1.40
641 656 9.823647 GTGGATGAGAGAGAATTCACTTATTTA 57.176 33.333 8.44 0.00 30.77 1.40
673 688 8.486210 TGATATCTTAGCCCAATATATGTCACC 58.514 37.037 3.98 0.00 0.00 4.02
674 689 6.702449 ATCTTAGCCCAATATATGTCACCA 57.298 37.500 0.00 0.00 0.00 4.17
675 690 6.702449 TCTTAGCCCAATATATGTCACCAT 57.298 37.500 0.00 0.00 34.97 3.55
676 691 7.806680 TCTTAGCCCAATATATGTCACCATA 57.193 36.000 0.00 0.00 37.92 2.74
677 692 8.213489 TCTTAGCCCAATATATGTCACCATAA 57.787 34.615 0.00 0.00 37.12 1.90
678 693 8.835734 TCTTAGCCCAATATATGTCACCATAAT 58.164 33.333 0.00 0.00 37.12 1.28
679 694 9.466497 CTTAGCCCAATATATGTCACCATAATT 57.534 33.333 0.00 0.00 37.12 1.40
680 695 9.821240 TTAGCCCAATATATGTCACCATAATTT 57.179 29.630 0.00 0.00 37.12 1.82
681 696 8.725606 AGCCCAATATATGTCACCATAATTTT 57.274 30.769 0.00 0.00 37.12 1.82
682 697 8.587608 AGCCCAATATATGTCACCATAATTTTG 58.412 33.333 0.00 0.00 37.12 2.44
683 698 7.818930 GCCCAATATATGTCACCATAATTTTGG 59.181 37.037 12.84 12.84 42.82 3.28
684 699 9.087871 CCCAATATATGTCACCATAATTTTGGA 57.912 33.333 20.29 0.00 39.83 3.53
691 706 7.716799 TGTCACCATAATTTTGGAAATAGCT 57.283 32.000 20.29 0.00 39.25 3.32
692 707 8.815565 TGTCACCATAATTTTGGAAATAGCTA 57.184 30.769 20.29 0.00 39.25 3.32
693 708 8.902806 TGTCACCATAATTTTGGAAATAGCTAG 58.097 33.333 20.29 0.00 39.25 3.42
694 709 8.903820 GTCACCATAATTTTGGAAATAGCTAGT 58.096 33.333 20.29 0.00 39.25 2.57
695 710 9.474313 TCACCATAATTTTGGAAATAGCTAGTT 57.526 29.630 20.29 6.06 39.25 2.24
723 738 9.377238 TCTTAGATAAGATTAAGAGGTAACCCC 57.623 37.037 0.00 0.00 37.40 4.95
724 739 9.382307 CTTAGATAAGATTAAGAGGTAACCCCT 57.618 37.037 0.00 0.00 40.12 4.79
725 740 9.739737 TTAGATAAGATTAAGAGGTAACCCCTT 57.260 33.333 0.00 0.00 46.51 3.95
726 741 8.035448 AGATAAGATTAAGAGGTAACCCCTTG 57.965 38.462 0.00 0.00 46.51 3.61
727 742 7.628101 AGATAAGATTAAGAGGTAACCCCTTGT 59.372 37.037 0.00 0.00 46.51 3.16
728 743 5.437191 AGATTAAGAGGTAACCCCTTGTG 57.563 43.478 0.00 0.00 46.51 3.33
729 744 4.850386 AGATTAAGAGGTAACCCCTTGTGT 59.150 41.667 0.00 0.00 46.51 3.72
730 745 6.027482 AGATTAAGAGGTAACCCCTTGTGTA 58.973 40.000 0.00 0.00 46.51 2.90
731 746 5.488262 TTAAGAGGTAACCCCTTGTGTAC 57.512 43.478 0.00 0.00 46.51 2.90
732 747 2.980548 AGAGGTAACCCCTTGTGTACA 58.019 47.619 0.00 0.00 46.51 2.90
733 748 3.527937 AGAGGTAACCCCTTGTGTACAT 58.472 45.455 0.00 0.00 46.51 2.29
734 749 3.263425 AGAGGTAACCCCTTGTGTACATG 59.737 47.826 0.00 0.00 46.51 3.21
735 750 2.983898 AGGTAACCCCTTGTGTACATGT 59.016 45.455 2.69 2.69 42.73 3.21
736 751 3.396611 AGGTAACCCCTTGTGTACATGTT 59.603 43.478 2.30 0.00 42.73 2.71
737 752 3.504520 GGTAACCCCTTGTGTACATGTTG 59.495 47.826 2.30 0.00 0.00 3.33
738 753 1.616159 ACCCCTTGTGTACATGTTGC 58.384 50.000 2.30 0.00 0.00 4.17
739 754 1.133637 ACCCCTTGTGTACATGTTGCA 60.134 47.619 2.30 0.57 0.00 4.08
740 755 2.170166 CCCCTTGTGTACATGTTGCAT 58.830 47.619 2.30 0.00 0.00 3.96
741 756 2.562298 CCCCTTGTGTACATGTTGCATT 59.438 45.455 2.30 0.00 0.00 3.56
742 757 3.577667 CCCTTGTGTACATGTTGCATTG 58.422 45.455 2.30 0.00 0.00 2.82
743 758 2.988493 CCTTGTGTACATGTTGCATTGC 59.012 45.455 2.30 0.46 0.00 3.56
744 759 2.721274 TGTGTACATGTTGCATTGCC 57.279 45.000 2.30 0.00 0.00 4.52
745 760 1.959282 TGTGTACATGTTGCATTGCCA 59.041 42.857 2.30 0.00 0.00 4.92
746 761 2.561858 TGTGTACATGTTGCATTGCCAT 59.438 40.909 2.30 0.21 0.00 4.40
747 762 3.181397 GTGTACATGTTGCATTGCCATC 58.819 45.455 2.30 0.00 0.00 3.51
748 763 3.090790 TGTACATGTTGCATTGCCATCT 58.909 40.909 2.30 0.00 0.00 2.90
749 764 3.510753 TGTACATGTTGCATTGCCATCTT 59.489 39.130 2.30 0.00 0.00 2.40
750 765 3.688694 ACATGTTGCATTGCCATCTTT 57.311 38.095 6.12 0.00 0.00 2.52
751 766 4.804868 ACATGTTGCATTGCCATCTTTA 57.195 36.364 6.12 0.00 0.00 1.85
752 767 5.149973 ACATGTTGCATTGCCATCTTTAA 57.850 34.783 6.12 0.00 0.00 1.52
753 768 5.549347 ACATGTTGCATTGCCATCTTTAAA 58.451 33.333 6.12 0.00 0.00 1.52
754 769 6.174760 ACATGTTGCATTGCCATCTTTAAAT 58.825 32.000 6.12 0.00 0.00 1.40
755 770 6.655848 ACATGTTGCATTGCCATCTTTAAATT 59.344 30.769 6.12 0.00 0.00 1.82
756 771 7.823310 ACATGTTGCATTGCCATCTTTAAATTA 59.177 29.630 6.12 0.00 0.00 1.40
757 772 7.593875 TGTTGCATTGCCATCTTTAAATTAC 57.406 32.000 6.12 0.00 0.00 1.89
758 773 7.157347 TGTTGCATTGCCATCTTTAAATTACA 58.843 30.769 6.12 0.00 0.00 2.41
759 774 7.823310 TGTTGCATTGCCATCTTTAAATTACAT 59.177 29.630 6.12 0.00 0.00 2.29
760 775 7.773864 TGCATTGCCATCTTTAAATTACATG 57.226 32.000 6.12 0.00 0.00 3.21
761 776 6.258287 TGCATTGCCATCTTTAAATTACATGC 59.742 34.615 6.12 0.00 0.00 4.06
762 777 6.258287 GCATTGCCATCTTTAAATTACATGCA 59.742 34.615 0.00 0.00 0.00 3.96
763 778 7.201626 GCATTGCCATCTTTAAATTACATGCAA 60.202 33.333 0.00 10.40 0.00 4.08
764 779 7.830940 TTGCCATCTTTAAATTACATGCAAG 57.169 32.000 0.00 0.00 0.00 4.01
765 780 6.339730 TGCCATCTTTAAATTACATGCAAGG 58.660 36.000 0.00 0.00 0.00 3.61
766 781 6.070881 TGCCATCTTTAAATTACATGCAAGGT 60.071 34.615 0.00 0.00 32.53 3.50
767 782 6.818142 GCCATCTTTAAATTACATGCAAGGTT 59.182 34.615 0.00 0.00 28.09 3.50
768 783 7.334171 GCCATCTTTAAATTACATGCAAGGTTT 59.666 33.333 0.00 0.00 28.09 3.27
769 784 9.868277 CCATCTTTAAATTACATGCAAGGTTTA 57.132 29.630 0.00 0.00 28.09 2.01
778 793 9.533253 AATTACATGCAAGGTTTATGATAAAGC 57.467 29.630 16.89 16.89 28.09 3.51
779 794 6.780457 ACATGCAAGGTTTATGATAAAGCT 57.220 33.333 20.41 20.41 39.38 3.74
780 795 7.880160 ACATGCAAGGTTTATGATAAAGCTA 57.120 32.000 24.65 13.34 37.03 3.32
781 796 8.469309 ACATGCAAGGTTTATGATAAAGCTAT 57.531 30.769 24.65 14.73 37.03 2.97
782 797 8.571336 ACATGCAAGGTTTATGATAAAGCTATC 58.429 33.333 24.65 19.45 37.03 2.08
783 798 8.570488 CATGCAAGGTTTATGATAAAGCTATCA 58.430 33.333 24.65 23.02 46.23 2.15
796 811 9.710900 TGATAAAGCTATCATATCAACGATTGT 57.289 29.630 8.26 0.00 39.21 2.71
799 814 8.887036 AAAGCTATCATATCAACGATTGTACA 57.113 30.769 0.00 0.00 0.00 2.90
800 815 9.494271 AAAGCTATCATATCAACGATTGTACAT 57.506 29.630 0.00 0.00 0.00 2.29
801 816 8.471361 AGCTATCATATCAACGATTGTACATG 57.529 34.615 0.00 0.00 0.00 3.21
802 817 8.090831 AGCTATCATATCAACGATTGTACATGT 58.909 33.333 2.69 2.69 0.00 3.21
803 818 8.376203 GCTATCATATCAACGATTGTACATGTC 58.624 37.037 0.00 0.00 0.00 3.06
804 819 7.658179 ATCATATCAACGATTGTACATGTCC 57.342 36.000 0.00 0.00 0.00 4.02
805 820 6.816136 TCATATCAACGATTGTACATGTCCT 58.184 36.000 0.00 0.00 0.00 3.85
806 821 7.947282 TCATATCAACGATTGTACATGTCCTA 58.053 34.615 0.00 0.00 0.00 2.94
807 822 8.417884 TCATATCAACGATTGTACATGTCCTAA 58.582 33.333 0.00 0.00 0.00 2.69
808 823 9.040939 CATATCAACGATTGTACATGTCCTAAA 57.959 33.333 0.00 0.00 0.00 1.85
809 824 9.778741 ATATCAACGATTGTACATGTCCTAAAT 57.221 29.630 0.00 0.00 0.00 1.40
811 826 9.778741 ATCAACGATTGTACATGTCCTAAATAT 57.221 29.630 0.00 0.00 0.00 1.28
812 827 9.607988 TCAACGATTGTACATGTCCTAAATATT 57.392 29.630 0.00 0.00 0.00 1.28
862 877 3.565764 TGGATTGATCAAGTGGCTAGG 57.434 47.619 14.54 0.00 0.00 3.02
949 965 3.369157 GCCATAACTAGTCAAAGACGGGT 60.369 47.826 0.00 0.00 37.67 5.28
1023 1039 2.637521 CGCCTCCTACATAGCGGTA 58.362 57.895 0.00 0.00 44.64 4.02
1597 1613 2.335712 GCAAGAGCCGTTTCAGGGG 61.336 63.158 0.00 0.00 33.58 4.79
1684 1700 3.753434 CGACTCTGCGCCTGGTCT 61.753 66.667 4.18 0.00 0.00 3.85
1710 1726 2.826702 GACGGGTGGGTGTCTTGT 59.173 61.111 0.00 0.00 32.37 3.16
1977 2005 8.495160 ACAAGAAGATCAGATAGAAGGATCAT 57.505 34.615 0.00 0.00 39.85 2.45
2040 2072 5.364778 TGCATTTAGTTGACGCAGGTATAT 58.635 37.500 0.00 0.00 0.00 0.86
2045 2077 6.656314 TTAGTTGACGCAGGTATATTTGTG 57.344 37.500 0.00 0.14 0.00 3.33
2046 2078 4.575885 AGTTGACGCAGGTATATTTGTGT 58.424 39.130 5.61 5.61 40.45 3.72
2047 2079 5.726397 AGTTGACGCAGGTATATTTGTGTA 58.274 37.500 5.84 0.00 38.09 2.90
2048 2080 6.346096 AGTTGACGCAGGTATATTTGTGTAT 58.654 36.000 5.84 0.00 38.09 2.29
2049 2081 7.494211 AGTTGACGCAGGTATATTTGTGTATA 58.506 34.615 5.84 0.00 38.09 1.47
2050 2082 7.437267 AGTTGACGCAGGTATATTTGTGTATAC 59.563 37.037 0.00 0.00 38.09 1.47
2051 2083 6.807789 TGACGCAGGTATATTTGTGTATACA 58.192 36.000 0.08 0.08 38.64 2.29
2204 2266 0.107703 TGGATGATGGAGTTGCGGAC 60.108 55.000 0.00 0.00 0.00 4.79
2237 2299 7.982224 TGATTGCATCTCTTTTGACATTCTAG 58.018 34.615 0.00 0.00 0.00 2.43
2341 2403 2.134287 ACACACACGCCAGAGGACT 61.134 57.895 0.00 0.00 0.00 3.85
2351 2413 0.176680 CCAGAGGACTAGCGCACAAT 59.823 55.000 11.47 0.00 0.00 2.71
2360 2422 0.953471 TAGCGCACAATCACACACCC 60.953 55.000 11.47 0.00 0.00 4.61
2391 2453 2.880879 AGATAGCACGCACGCACG 60.881 61.111 0.00 0.00 39.50 5.34
2392 2454 4.559386 GATAGCACGCACGCACGC 62.559 66.667 0.00 0.00 36.19 5.34
2450 2512 3.868661 GGCAAAATTTCGTGTTTTGACCT 59.131 39.130 19.19 0.00 44.81 3.85
2484 2547 0.688487 TCGAGATTTGACCCCGGTTT 59.312 50.000 0.00 0.00 0.00 3.27
2495 2558 4.946445 TGACCCCGGTTTGTAAAAATTTC 58.054 39.130 0.00 0.00 0.00 2.17
2496 2559 4.404715 TGACCCCGGTTTGTAAAAATTTCA 59.595 37.500 0.00 0.00 0.00 2.69
2499 2562 4.752604 CCCCGGTTTGTAAAAATTTCAAGG 59.247 41.667 0.00 0.00 0.00 3.61
2503 2566 6.200097 CCGGTTTGTAAAAATTTCAAGGTCTG 59.800 38.462 0.00 0.00 0.00 3.51
2505 2568 7.651704 CGGTTTGTAAAAATTTCAAGGTCTGAT 59.348 33.333 0.00 0.00 32.78 2.90
2534 2598 1.300620 CCGCCACAGACTTTGACGA 60.301 57.895 0.00 0.00 0.00 4.20
2552 2616 9.424319 CTTTGACGATAAGGTATAACATGCTAT 57.576 33.333 0.00 0.00 0.00 2.97
2559 2623 2.666508 GGTATAACATGCTATCGCCACG 59.333 50.000 0.00 0.00 34.43 4.94
2572 2636 2.666190 CCACGGGCTATGGCGATG 60.666 66.667 0.00 0.00 39.81 3.84
2588 2652 0.179174 GATGGGTTTTAACTGCGCCG 60.179 55.000 4.18 0.00 0.00 6.46
2619 2704 2.785477 CGTAACGTGGAAATAGCGGTAG 59.215 50.000 0.00 0.00 0.00 3.18
2639 2724 1.472728 GGCCATTATATCCTACCGCCG 60.473 57.143 0.00 0.00 0.00 6.46
2659 2744 1.130561 GCAATTGTTGGCGGTAGAGTC 59.869 52.381 7.40 0.00 0.00 3.36
2666 2751 1.704641 TGGCGGTAGAGTCTGCATAT 58.295 50.000 10.59 0.00 41.03 1.78
2771 2856 1.903404 CCTGGGGCTGAAACACCAC 60.903 63.158 0.00 0.00 0.00 4.16
2775 2860 2.639286 GGCTGAAACACCACGCAG 59.361 61.111 0.00 0.00 0.00 5.18
2788 2873 0.936297 CACGCAGCAAAGAAACAGCC 60.936 55.000 0.00 0.00 0.00 4.85
2798 2883 3.959535 AAGAAACAGCCAGAGAGAGAG 57.040 47.619 0.00 0.00 0.00 3.20
2874 2959 2.484062 GCAACGCATGGGATGGAGG 61.484 63.158 17.76 0.39 0.00 4.30
2891 2976 1.415659 GAGGCATGGATCACTGTAGCT 59.584 52.381 0.00 0.00 0.00 3.32
2950 3035 8.421784 GGGGTTCTCCATTTAAGAAATATTTCC 58.578 37.037 21.86 6.98 36.08 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.505742 GGTGAAGGAAATATGCCCTAGAGG 60.506 50.000 0.00 0.00 39.47 3.69
70 71 4.505742 GGGTGAAGGAAATATGCCCTAGAG 60.506 50.000 0.00 0.00 31.36 2.43
71 72 3.394606 GGGTGAAGGAAATATGCCCTAGA 59.605 47.826 0.00 0.00 31.36 2.43
72 73 3.498661 GGGGTGAAGGAAATATGCCCTAG 60.499 52.174 0.00 0.00 35.19 3.02
73 74 2.445525 GGGGTGAAGGAAATATGCCCTA 59.554 50.000 0.00 0.00 35.19 3.53
74 75 1.217942 GGGGTGAAGGAAATATGCCCT 59.782 52.381 0.00 0.00 35.19 5.19
75 76 1.704641 GGGGTGAAGGAAATATGCCC 58.295 55.000 0.00 0.00 0.00 5.36
76 77 1.704641 GGGGGTGAAGGAAATATGCC 58.295 55.000 0.00 0.00 0.00 4.40
92 93 3.274550 AAGAGGGGTCCAGAGGGGG 62.275 68.421 0.00 0.00 37.22 5.40
93 94 1.690985 GAAGAGGGGTCCAGAGGGG 60.691 68.421 0.00 0.00 38.37 4.79
94 95 0.689412 GAGAAGAGGGGTCCAGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
95 96 1.040339 CGAGAAGAGGGGTCCAGAGG 61.040 65.000 0.00 0.00 0.00 3.69
96 97 0.323908 ACGAGAAGAGGGGTCCAGAG 60.324 60.000 0.00 0.00 0.00 3.35
97 98 0.114560 AACGAGAAGAGGGGTCCAGA 59.885 55.000 0.00 0.00 0.00 3.86
98 99 0.533032 GAACGAGAAGAGGGGTCCAG 59.467 60.000 0.00 0.00 0.00 3.86
99 100 0.903454 GGAACGAGAAGAGGGGTCCA 60.903 60.000 0.00 0.00 0.00 4.02
100 101 0.615261 AGGAACGAGAAGAGGGGTCC 60.615 60.000 0.00 0.00 0.00 4.46
101 102 1.268066 AAGGAACGAGAAGAGGGGTC 58.732 55.000 0.00 0.00 0.00 4.46
102 103 1.624312 GAAAGGAACGAGAAGAGGGGT 59.376 52.381 0.00 0.00 0.00 4.95
103 104 1.623811 TGAAAGGAACGAGAAGAGGGG 59.376 52.381 0.00 0.00 0.00 4.79
104 105 2.966050 CTGAAAGGAACGAGAAGAGGG 58.034 52.381 0.00 0.00 0.00 4.30
118 119 2.275318 GACATTCTCGCCTCCTGAAAG 58.725 52.381 0.00 0.00 0.00 2.62
119 120 1.623311 TGACATTCTCGCCTCCTGAAA 59.377 47.619 0.00 0.00 0.00 2.69
120 121 1.205655 CTGACATTCTCGCCTCCTGAA 59.794 52.381 0.00 0.00 0.00 3.02
121 122 0.820226 CTGACATTCTCGCCTCCTGA 59.180 55.000 0.00 0.00 0.00 3.86
122 123 0.179089 CCTGACATTCTCGCCTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
123 124 1.965754 GCCTGACATTCTCGCCTCCT 61.966 60.000 0.00 0.00 0.00 3.69
124 125 1.522580 GCCTGACATTCTCGCCTCC 60.523 63.158 0.00 0.00 0.00 4.30
125 126 0.529555 GAGCCTGACATTCTCGCCTC 60.530 60.000 0.00 0.00 0.00 4.70
126 127 1.519719 GAGCCTGACATTCTCGCCT 59.480 57.895 0.00 0.00 0.00 5.52
127 128 1.522580 GGAGCCTGACATTCTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
128 129 0.391661 TTGGAGCCTGACATTCTCGC 60.392 55.000 0.00 0.00 0.00 5.03
129 130 1.649664 CTTGGAGCCTGACATTCTCG 58.350 55.000 0.00 0.00 0.00 4.04
130 131 1.407989 CCCTTGGAGCCTGACATTCTC 60.408 57.143 0.00 0.00 0.00 2.87
131 132 0.622665 CCCTTGGAGCCTGACATTCT 59.377 55.000 0.00 0.00 0.00 2.40
132 133 0.329596 ACCCTTGGAGCCTGACATTC 59.670 55.000 0.00 0.00 0.00 2.67
133 134 0.329596 GACCCTTGGAGCCTGACATT 59.670 55.000 0.00 0.00 0.00 2.71
134 135 0.842030 TGACCCTTGGAGCCTGACAT 60.842 55.000 0.00 0.00 0.00 3.06
135 136 0.842030 ATGACCCTTGGAGCCTGACA 60.842 55.000 0.00 0.00 0.00 3.58
136 137 0.393537 CATGACCCTTGGAGCCTGAC 60.394 60.000 0.00 0.00 0.00 3.51
137 138 0.547471 TCATGACCCTTGGAGCCTGA 60.547 55.000 0.00 0.00 0.00 3.86
138 139 0.393537 GTCATGACCCTTGGAGCCTG 60.394 60.000 15.31 0.00 0.00 4.85
139 140 1.566298 GGTCATGACCCTTGGAGCCT 61.566 60.000 31.37 0.00 45.68 4.58
140 141 1.077429 GGTCATGACCCTTGGAGCC 60.077 63.158 31.37 5.53 45.68 4.70
141 142 4.645809 GGTCATGACCCTTGGAGC 57.354 61.111 31.37 6.18 45.68 4.70
150 151 5.363939 CCTGATTTAGAAGAGGGTCATGAC 58.636 45.833 17.91 17.91 0.00 3.06
151 152 4.141620 GCCTGATTTAGAAGAGGGTCATGA 60.142 45.833 0.00 0.00 0.00 3.07
152 153 4.133078 GCCTGATTTAGAAGAGGGTCATG 58.867 47.826 0.00 0.00 0.00 3.07
153 154 3.137360 GGCCTGATTTAGAAGAGGGTCAT 59.863 47.826 0.00 0.00 0.00 3.06
154 155 2.505819 GGCCTGATTTAGAAGAGGGTCA 59.494 50.000 0.00 0.00 0.00 4.02
155 156 2.505819 TGGCCTGATTTAGAAGAGGGTC 59.494 50.000 3.32 0.00 0.00 4.46
156 157 2.562296 TGGCCTGATTTAGAAGAGGGT 58.438 47.619 3.32 0.00 0.00 4.34
157 158 3.393941 AGATGGCCTGATTTAGAAGAGGG 59.606 47.826 3.32 0.00 0.00 4.30
158 159 4.640364 GAGATGGCCTGATTTAGAAGAGG 58.360 47.826 3.32 0.00 0.00 3.69
159 160 4.038522 TCGAGATGGCCTGATTTAGAAGAG 59.961 45.833 3.32 0.00 0.00 2.85
160 161 3.960755 TCGAGATGGCCTGATTTAGAAGA 59.039 43.478 3.32 0.00 0.00 2.87
161 162 4.327982 TCGAGATGGCCTGATTTAGAAG 57.672 45.455 3.32 0.00 0.00 2.85
162 163 4.635223 CATCGAGATGGCCTGATTTAGAA 58.365 43.478 3.32 0.00 35.24 2.10
163 164 4.263018 CATCGAGATGGCCTGATTTAGA 57.737 45.455 3.32 0.00 35.24 2.10
175 176 2.538512 TGGCTCATTCCATCGAGATG 57.461 50.000 6.12 6.12 38.51 2.90
176 177 2.636403 TCATGGCTCATTCCATCGAGAT 59.364 45.455 0.00 0.00 44.63 2.75
177 178 2.036862 CTCATGGCTCATTCCATCGAGA 59.963 50.000 12.60 1.06 44.63 4.04
178 179 2.036862 TCTCATGGCTCATTCCATCGAG 59.963 50.000 12.10 12.10 44.63 4.04
179 180 2.041701 TCTCATGGCTCATTCCATCGA 58.958 47.619 0.00 0.00 44.63 3.59
180 181 2.141517 GTCTCATGGCTCATTCCATCG 58.858 52.381 0.00 0.00 44.63 3.84
181 182 3.488778 AGTCTCATGGCTCATTCCATC 57.511 47.619 0.00 0.00 44.63 3.51
183 184 2.356432 CCAAGTCTCATGGCTCATTCCA 60.356 50.000 0.00 0.00 40.97 3.53
184 185 2.295885 CCAAGTCTCATGGCTCATTCC 58.704 52.381 0.00 0.00 0.00 3.01
185 186 2.295885 CCCAAGTCTCATGGCTCATTC 58.704 52.381 0.00 0.00 36.58 2.67
186 187 1.637553 ACCCAAGTCTCATGGCTCATT 59.362 47.619 0.00 0.00 36.58 2.57
187 188 1.293062 ACCCAAGTCTCATGGCTCAT 58.707 50.000 0.00 0.00 36.58 2.90
188 189 1.067295 AACCCAAGTCTCATGGCTCA 58.933 50.000 0.00 0.00 36.58 4.26
189 190 1.815003 CAAACCCAAGTCTCATGGCTC 59.185 52.381 0.00 0.00 36.58 4.70
190 191 1.548582 CCAAACCCAAGTCTCATGGCT 60.549 52.381 0.00 0.00 36.58 4.75
191 192 0.890683 CCAAACCCAAGTCTCATGGC 59.109 55.000 0.00 0.00 36.58 4.40
192 193 0.890683 GCCAAACCCAAGTCTCATGG 59.109 55.000 0.00 0.00 37.71 3.66
193 194 0.890683 GGCCAAACCCAAGTCTCATG 59.109 55.000 0.00 0.00 0.00 3.07
194 195 3.363787 GGCCAAACCCAAGTCTCAT 57.636 52.632 0.00 0.00 0.00 2.90
195 196 4.920828 GGCCAAACCCAAGTCTCA 57.079 55.556 0.00 0.00 0.00 3.27
204 205 2.959372 GCGTAACTGGGCCAAACC 59.041 61.111 8.04 0.00 37.93 3.27
205 206 1.508808 TTCGCGTAACTGGGCCAAAC 61.509 55.000 8.04 5.43 0.00 2.93
206 207 0.606944 ATTCGCGTAACTGGGCCAAA 60.607 50.000 8.04 0.00 0.00 3.28
207 208 0.249676 TATTCGCGTAACTGGGCCAA 59.750 50.000 8.04 0.00 0.00 4.52
208 209 0.179094 CTATTCGCGTAACTGGGCCA 60.179 55.000 5.85 5.85 0.00 5.36
209 210 0.878961 CCTATTCGCGTAACTGGGCC 60.879 60.000 5.77 0.00 0.00 5.80
210 211 1.496403 GCCTATTCGCGTAACTGGGC 61.496 60.000 5.77 10.19 0.00 5.36
211 212 0.179094 TGCCTATTCGCGTAACTGGG 60.179 55.000 5.77 3.66 0.00 4.45
212 213 1.647346 TTGCCTATTCGCGTAACTGG 58.353 50.000 5.77 4.78 0.00 4.00
213 214 3.485216 CCTTTTGCCTATTCGCGTAACTG 60.485 47.826 5.77 0.00 0.00 3.16
214 215 2.676342 CCTTTTGCCTATTCGCGTAACT 59.324 45.455 5.77 0.00 0.00 2.24
215 216 2.417586 ACCTTTTGCCTATTCGCGTAAC 59.582 45.455 5.77 0.00 0.00 2.50
216 217 2.702261 ACCTTTTGCCTATTCGCGTAA 58.298 42.857 5.77 0.00 0.00 3.18
217 218 2.389962 ACCTTTTGCCTATTCGCGTA 57.610 45.000 5.77 0.00 0.00 4.42
218 219 1.530323 AACCTTTTGCCTATTCGCGT 58.470 45.000 5.77 0.00 0.00 6.01
219 220 2.629639 AAACCTTTTGCCTATTCGCG 57.370 45.000 0.00 0.00 0.00 5.87
220 221 6.695713 CCTTTATAAACCTTTTGCCTATTCGC 59.304 38.462 0.00 0.00 0.00 4.70
221 222 7.992008 TCCTTTATAAACCTTTTGCCTATTCG 58.008 34.615 0.00 0.00 0.00 3.34
222 223 9.185680 TCTCCTTTATAAACCTTTTGCCTATTC 57.814 33.333 0.00 0.00 0.00 1.75
223 224 9.541884 TTCTCCTTTATAAACCTTTTGCCTATT 57.458 29.630 0.00 0.00 0.00 1.73
224 225 9.190317 CTTCTCCTTTATAAACCTTTTGCCTAT 57.810 33.333 0.00 0.00 0.00 2.57
225 226 7.122204 GCTTCTCCTTTATAAACCTTTTGCCTA 59.878 37.037 0.00 0.00 0.00 3.93
226 227 6.071334 GCTTCTCCTTTATAAACCTTTTGCCT 60.071 38.462 0.00 0.00 0.00 4.75
227 228 6.071334 AGCTTCTCCTTTATAAACCTTTTGCC 60.071 38.462 0.00 0.00 0.00 4.52
228 229 6.925211 AGCTTCTCCTTTATAAACCTTTTGC 58.075 36.000 0.00 0.00 0.00 3.68
229 230 8.678199 CCTAGCTTCTCCTTTATAAACCTTTTG 58.322 37.037 0.00 0.00 0.00 2.44
230 231 7.339721 GCCTAGCTTCTCCTTTATAAACCTTTT 59.660 37.037 0.00 0.00 0.00 2.27
231 232 6.829298 GCCTAGCTTCTCCTTTATAAACCTTT 59.171 38.462 0.00 0.00 0.00 3.11
232 233 6.069615 TGCCTAGCTTCTCCTTTATAAACCTT 60.070 38.462 0.00 0.00 0.00 3.50
233 234 5.428783 TGCCTAGCTTCTCCTTTATAAACCT 59.571 40.000 0.00 0.00 0.00 3.50
234 235 5.681639 TGCCTAGCTTCTCCTTTATAAACC 58.318 41.667 0.00 0.00 0.00 3.27
255 256 1.734465 CAATTCGTTGTCCTCCTCTGC 59.266 52.381 0.00 0.00 0.00 4.26
268 269 9.778993 CTGAAGATGATTAACAAATCAATTCGT 57.221 29.630 16.40 7.10 41.90 3.85
279 280 5.178096 TGGGAAGCTGAAGATGATTAACA 57.822 39.130 0.00 0.00 0.00 2.41
282 283 5.901413 AGATGGGAAGCTGAAGATGATTA 57.099 39.130 0.00 0.00 0.00 1.75
314 315 1.541368 CAAGAGGAGGGGTGGGGAA 60.541 63.158 0.00 0.00 0.00 3.97
315 316 2.124996 CAAGAGGAGGGGTGGGGA 59.875 66.667 0.00 0.00 0.00 4.81
326 327 1.072015 GCATGAGAGGGATCCAAGAGG 59.928 57.143 15.23 0.00 0.00 3.69
327 328 1.072015 GGCATGAGAGGGATCCAAGAG 59.928 57.143 15.23 0.00 0.00 2.85
351 352 1.358152 AGGTCGGGGTGAGAAATCAA 58.642 50.000 0.00 0.00 0.00 2.57
393 395 7.136822 AGAACTGGATTAGCACCAACATATA 57.863 36.000 0.00 0.00 36.95 0.86
398 400 3.125316 CGAAGAACTGGATTAGCACCAAC 59.875 47.826 0.00 0.00 36.95 3.77
402 404 2.930682 GGACGAAGAACTGGATTAGCAC 59.069 50.000 0.00 0.00 0.00 4.40
405 407 3.887621 TGGGACGAAGAACTGGATTAG 57.112 47.619 0.00 0.00 0.00 1.73
407 409 2.840651 AGATGGGACGAAGAACTGGATT 59.159 45.455 0.00 0.00 0.00 3.01
416 418 3.674528 ATGCATAGAGATGGGACGAAG 57.325 47.619 0.00 0.00 33.26 3.79
420 422 3.072184 AGACCAATGCATAGAGATGGGAC 59.928 47.826 16.76 10.92 35.44 4.46
475 490 5.379187 CATTGGTCATCCTTACCATGATCA 58.621 41.667 0.00 0.00 46.16 2.92
502 517 9.420118 ACATGTATAGCAGAATTTTTGGGATAA 57.580 29.630 0.00 0.00 0.00 1.75
563 578 6.683974 AAGATAGCACCATTGTACATGTTC 57.316 37.500 2.30 0.00 0.00 3.18
564 579 6.767902 CCTAAGATAGCACCATTGTACATGTT 59.232 38.462 2.30 0.00 0.00 2.71
565 580 6.126768 ACCTAAGATAGCACCATTGTACATGT 60.127 38.462 2.69 2.69 0.00 3.21
566 581 6.203530 CACCTAAGATAGCACCATTGTACATG 59.796 42.308 0.00 0.00 0.00 3.21
567 582 6.126768 ACACCTAAGATAGCACCATTGTACAT 60.127 38.462 0.00 0.00 0.00 2.29
568 583 5.188948 ACACCTAAGATAGCACCATTGTACA 59.811 40.000 0.00 0.00 0.00 2.90
569 584 5.523916 CACACCTAAGATAGCACCATTGTAC 59.476 44.000 0.00 0.00 0.00 2.90
570 585 5.670485 CACACCTAAGATAGCACCATTGTA 58.330 41.667 0.00 0.00 0.00 2.41
571 586 4.517285 CACACCTAAGATAGCACCATTGT 58.483 43.478 0.00 0.00 0.00 2.71
572 587 3.313526 GCACACCTAAGATAGCACCATTG 59.686 47.826 0.00 0.00 0.00 2.82
573 588 3.545703 GCACACCTAAGATAGCACCATT 58.454 45.455 0.00 0.00 0.00 3.16
574 589 2.158755 GGCACACCTAAGATAGCACCAT 60.159 50.000 0.00 0.00 0.00 3.55
575 590 1.209504 GGCACACCTAAGATAGCACCA 59.790 52.381 0.00 0.00 0.00 4.17
576 591 1.209504 TGGCACACCTAAGATAGCACC 59.790 52.381 0.00 0.00 36.63 5.01
577 592 2.691409 TGGCACACCTAAGATAGCAC 57.309 50.000 0.00 0.00 36.63 4.40
590 605 5.131784 TCAGCAATTATCATATGTGGCACA 58.868 37.500 24.36 24.36 0.00 4.57
591 606 5.335426 CCTCAGCAATTATCATATGTGGCAC 60.335 44.000 11.55 11.55 0.00 5.01
592 607 4.763279 CCTCAGCAATTATCATATGTGGCA 59.237 41.667 1.90 0.00 0.00 4.92
593 608 4.763793 ACCTCAGCAATTATCATATGTGGC 59.236 41.667 1.90 0.00 0.00 5.01
594 609 5.182570 CCACCTCAGCAATTATCATATGTGG 59.817 44.000 1.90 0.00 33.25 4.17
595 610 5.999600 TCCACCTCAGCAATTATCATATGTG 59.000 40.000 1.90 0.00 0.00 3.21
596 611 6.191657 TCCACCTCAGCAATTATCATATGT 57.808 37.500 1.90 0.00 0.00 2.29
597 612 6.882678 TCATCCACCTCAGCAATTATCATATG 59.117 38.462 0.00 0.00 0.00 1.78
598 613 7.024345 TCATCCACCTCAGCAATTATCATAT 57.976 36.000 0.00 0.00 0.00 1.78
599 614 6.270695 TCTCATCCACCTCAGCAATTATCATA 59.729 38.462 0.00 0.00 0.00 2.15
600 615 5.072736 TCTCATCCACCTCAGCAATTATCAT 59.927 40.000 0.00 0.00 0.00 2.45
601 616 4.409901 TCTCATCCACCTCAGCAATTATCA 59.590 41.667 0.00 0.00 0.00 2.15
602 617 4.965814 TCTCATCCACCTCAGCAATTATC 58.034 43.478 0.00 0.00 0.00 1.75
603 618 4.657504 TCTCTCATCCACCTCAGCAATTAT 59.342 41.667 0.00 0.00 0.00 1.28
604 619 4.033009 TCTCTCATCCACCTCAGCAATTA 58.967 43.478 0.00 0.00 0.00 1.40
605 620 2.842496 TCTCTCATCCACCTCAGCAATT 59.158 45.455 0.00 0.00 0.00 2.32
606 621 2.435069 CTCTCTCATCCACCTCAGCAAT 59.565 50.000 0.00 0.00 0.00 3.56
607 622 1.829849 CTCTCTCATCCACCTCAGCAA 59.170 52.381 0.00 0.00 0.00 3.91
608 623 1.006400 TCTCTCTCATCCACCTCAGCA 59.994 52.381 0.00 0.00 0.00 4.41
609 624 1.774110 TCTCTCTCATCCACCTCAGC 58.226 55.000 0.00 0.00 0.00 4.26
610 625 4.405036 TGAATTCTCTCTCATCCACCTCAG 59.595 45.833 7.05 0.00 0.00 3.35
611 626 4.161189 GTGAATTCTCTCTCATCCACCTCA 59.839 45.833 7.05 0.00 0.00 3.86
612 627 4.405358 AGTGAATTCTCTCTCATCCACCTC 59.595 45.833 7.05 0.00 0.00 3.85
613 628 4.360889 AGTGAATTCTCTCTCATCCACCT 58.639 43.478 7.05 0.00 0.00 4.00
614 629 4.751767 AGTGAATTCTCTCTCATCCACC 57.248 45.455 7.05 0.00 0.00 4.61
615 630 8.729805 AAATAAGTGAATTCTCTCTCATCCAC 57.270 34.615 10.31 0.00 0.00 4.02
647 662 8.486210 GGTGACATATATTGGGCTAAGATATCA 58.514 37.037 7.64 3.25 32.34 2.15
648 663 8.486210 TGGTGACATATATTGGGCTAAGATATC 58.514 37.037 7.64 0.00 32.34 1.63
649 664 8.392631 TGGTGACATATATTGGGCTAAGATAT 57.607 34.615 5.06 5.06 34.38 1.63
650 665 7.806680 TGGTGACATATATTGGGCTAAGATA 57.193 36.000 0.30 0.30 33.40 1.98
651 666 6.702449 TGGTGACATATATTGGGCTAAGAT 57.298 37.500 0.00 0.00 33.40 2.40
668 683 8.903820 ACTAGCTATTTCCAAAATTATGGTGAC 58.096 33.333 0.00 0.00 41.46 3.67
669 684 9.474313 AACTAGCTATTTCCAAAATTATGGTGA 57.526 29.630 0.00 0.00 41.46 4.02
697 712 9.377238 GGGGTTACCTCTTAATCTTATCTAAGA 57.623 37.037 0.00 2.32 40.63 2.10
715 730 3.428413 ACATGTACACAAGGGGTTACC 57.572 47.619 0.00 0.00 40.67 2.85
716 731 3.057806 GCAACATGTACACAAGGGGTTAC 60.058 47.826 0.00 0.00 0.00 2.50
717 732 3.150767 GCAACATGTACACAAGGGGTTA 58.849 45.455 0.00 0.00 0.00 2.85
718 733 1.960689 GCAACATGTACACAAGGGGTT 59.039 47.619 0.00 0.00 0.00 4.11
719 734 1.133637 TGCAACATGTACACAAGGGGT 60.134 47.619 0.00 0.00 0.00 4.95
720 735 1.614996 TGCAACATGTACACAAGGGG 58.385 50.000 0.00 0.00 0.00 4.79
721 736 3.577667 CAATGCAACATGTACACAAGGG 58.422 45.455 0.00 0.00 0.00 3.95
722 737 2.988493 GCAATGCAACATGTACACAAGG 59.012 45.455 0.00 0.00 0.00 3.61
723 738 2.988493 GGCAATGCAACATGTACACAAG 59.012 45.455 7.79 0.00 0.00 3.16
724 739 2.363359 TGGCAATGCAACATGTACACAA 59.637 40.909 7.79 0.00 0.00 3.33
725 740 1.959282 TGGCAATGCAACATGTACACA 59.041 42.857 7.79 0.00 0.00 3.72
726 741 2.721274 TGGCAATGCAACATGTACAC 57.279 45.000 7.79 0.00 0.00 2.90
727 742 3.090790 AGATGGCAATGCAACATGTACA 58.909 40.909 7.79 0.00 0.00 2.90
728 743 3.788333 AGATGGCAATGCAACATGTAC 57.212 42.857 7.79 0.00 0.00 2.90
729 744 4.804868 AAAGATGGCAATGCAACATGTA 57.195 36.364 7.79 0.00 0.00 2.29
730 745 3.688694 AAAGATGGCAATGCAACATGT 57.311 38.095 7.79 0.00 0.00 3.21
731 746 6.671614 ATTTAAAGATGGCAATGCAACATG 57.328 33.333 7.79 0.00 0.00 3.21
732 747 7.823310 TGTAATTTAAAGATGGCAATGCAACAT 59.177 29.630 7.79 1.63 0.00 2.71
733 748 7.157347 TGTAATTTAAAGATGGCAATGCAACA 58.843 30.769 7.79 0.00 0.00 3.33
734 749 7.593875 TGTAATTTAAAGATGGCAATGCAAC 57.406 32.000 7.79 0.00 0.00 4.17
735 750 7.201626 GCATGTAATTTAAAGATGGCAATGCAA 60.202 33.333 7.79 0.00 0.00 4.08
736 751 6.258287 GCATGTAATTTAAAGATGGCAATGCA 59.742 34.615 7.79 0.00 0.00 3.96
737 752 6.258287 TGCATGTAATTTAAAGATGGCAATGC 59.742 34.615 0.00 0.00 0.00 3.56
738 753 7.773864 TGCATGTAATTTAAAGATGGCAATG 57.226 32.000 0.00 0.00 0.00 2.82
739 754 7.496591 CCTTGCATGTAATTTAAAGATGGCAAT 59.503 33.333 12.20 0.00 0.00 3.56
740 755 6.817641 CCTTGCATGTAATTTAAAGATGGCAA 59.182 34.615 0.00 11.61 0.00 4.52
741 756 6.070881 ACCTTGCATGTAATTTAAAGATGGCA 60.071 34.615 0.00 0.00 0.00 4.92
742 757 6.340522 ACCTTGCATGTAATTTAAAGATGGC 58.659 36.000 0.00 0.00 0.00 4.40
743 758 8.776376 AAACCTTGCATGTAATTTAAAGATGG 57.224 30.769 0.00 0.00 0.00 3.51
752 767 9.533253 GCTTTATCATAAACCTTGCATGTAATT 57.467 29.630 0.00 0.00 0.00 1.40
753 768 8.917088 AGCTTTATCATAAACCTTGCATGTAAT 58.083 29.630 0.00 0.00 0.00 1.89
754 769 8.292444 AGCTTTATCATAAACCTTGCATGTAA 57.708 30.769 0.00 0.00 0.00 2.41
755 770 7.880160 AGCTTTATCATAAACCTTGCATGTA 57.120 32.000 0.00 0.00 0.00 2.29
756 771 6.780457 AGCTTTATCATAAACCTTGCATGT 57.220 33.333 0.00 0.00 0.00 3.21
757 772 8.570488 TGATAGCTTTATCATAAACCTTGCATG 58.430 33.333 0.00 0.00 32.04 4.06
758 773 8.696043 TGATAGCTTTATCATAAACCTTGCAT 57.304 30.769 0.00 0.00 32.04 3.96
759 774 8.696043 ATGATAGCTTTATCATAAACCTTGCA 57.304 30.769 9.77 0.00 43.26 4.08
770 785 9.710900 ACAATCGTTGATATGATAGCTTTATCA 57.289 29.630 1.69 1.69 40.34 2.15
773 788 9.974980 TGTACAATCGTTGATATGATAGCTTTA 57.025 29.630 0.00 0.00 29.78 1.85
774 789 8.887036 TGTACAATCGTTGATATGATAGCTTT 57.113 30.769 0.00 0.00 29.78 3.51
775 790 8.929746 CATGTACAATCGTTGATATGATAGCTT 58.070 33.333 0.00 0.00 29.78 3.74
776 791 8.090831 ACATGTACAATCGTTGATATGATAGCT 58.909 33.333 0.00 0.00 29.78 3.32
777 792 8.244494 ACATGTACAATCGTTGATATGATAGC 57.756 34.615 0.00 0.00 29.78 2.97
778 793 8.864024 GGACATGTACAATCGTTGATATGATAG 58.136 37.037 2.19 0.00 29.78 2.08
779 794 8.585018 AGGACATGTACAATCGTTGATATGATA 58.415 33.333 11.55 0.00 29.78 2.15
780 795 7.445121 AGGACATGTACAATCGTTGATATGAT 58.555 34.615 11.55 0.00 0.00 2.45
781 796 6.816136 AGGACATGTACAATCGTTGATATGA 58.184 36.000 11.55 0.00 0.00 2.15
782 797 8.587952 TTAGGACATGTACAATCGTTGATATG 57.412 34.615 11.55 0.00 0.00 1.78
783 798 9.778741 ATTTAGGACATGTACAATCGTTGATAT 57.221 29.630 11.55 0.00 0.00 1.63
785 800 9.778741 ATATTTAGGACATGTACAATCGTTGAT 57.221 29.630 11.55 3.67 0.00 2.57
786 801 9.607988 AATATTTAGGACATGTACAATCGTTGA 57.392 29.630 11.55 0.00 0.00 3.18
807 822 9.097257 GCTTGCCACATGTAATAACAAAATATT 57.903 29.630 0.00 0.00 39.58 1.28
808 823 7.434897 CGCTTGCCACATGTAATAACAAAATAT 59.565 33.333 0.00 0.00 39.58 1.28
809 824 6.749578 CGCTTGCCACATGTAATAACAAAATA 59.250 34.615 0.00 0.00 39.58 1.40
810 825 5.576384 CGCTTGCCACATGTAATAACAAAAT 59.424 36.000 0.00 0.00 39.58 1.82
811 826 4.920340 CGCTTGCCACATGTAATAACAAAA 59.080 37.500 0.00 0.00 39.58 2.44
812 827 4.480541 CGCTTGCCACATGTAATAACAAA 58.519 39.130 0.00 0.00 39.58 2.83
824 839 1.972752 ATCATGTGCGCTTGCCACA 60.973 52.632 9.73 15.32 38.03 4.17
1023 1039 2.590007 GCGGCGAGGATGAGCAAT 60.590 61.111 12.98 0.00 34.54 3.56
1065 1081 3.547249 GAAGGTGACGACGTGCCGA 62.547 63.158 4.58 0.00 0.00 5.54
1254 1270 1.504647 CGGCGGACGCTACTATGAGA 61.505 60.000 16.72 0.00 41.60 3.27
1308 1324 2.770048 AAGAGGAGGCGATGGGGG 60.770 66.667 0.00 0.00 0.00 5.40
1666 1682 4.057428 GACCAGGCGCAGAGTCGT 62.057 66.667 10.83 0.00 0.00 4.34
1684 1700 4.308458 CCACCCGTCGTTGCTCCA 62.308 66.667 0.00 0.00 0.00 3.86
1710 1726 4.758251 CCCACGTCATGCTCCGCA 62.758 66.667 0.00 0.00 44.86 5.69
1777 1805 2.048597 CTCCACCAGCGCGTACAA 60.049 61.111 8.43 0.00 0.00 2.41
1977 2005 3.096495 GGGGATGGCCAGGCACTA 61.096 66.667 15.19 0.00 36.02 2.74
2237 2299 2.028112 TGTGAGGAAGGACAGCACATAC 60.028 50.000 0.00 0.00 34.85 2.39
2341 2403 0.953471 GGGTGTGTGATTGTGCGCTA 60.953 55.000 9.73 0.00 0.00 4.26
2391 2453 1.012234 GTGCGCGCTGTATACTTGC 60.012 57.895 33.29 7.76 0.00 4.01
2392 2454 1.137459 TCGTGCGCGCTGTATACTTG 61.137 55.000 33.29 9.68 38.14 3.16
2469 2532 4.587584 TTTTACAAACCGGGGTCAAATC 57.412 40.909 6.32 0.00 0.00 2.17
2495 2558 4.142816 CGGTAGCAAAAAGATCAGACCTTG 60.143 45.833 0.00 0.00 0.00 3.61
2496 2559 4.003648 CGGTAGCAAAAAGATCAGACCTT 58.996 43.478 0.00 0.00 0.00 3.50
2499 2562 3.391227 GCGGTAGCAAAAAGATCAGAC 57.609 47.619 0.00 0.00 44.35 3.51
2559 2623 0.755327 AAAACCCATCGCCATAGCCC 60.755 55.000 0.00 0.00 34.57 5.19
2565 2629 0.885196 GCAGTTAAAACCCATCGCCA 59.115 50.000 0.00 0.00 0.00 5.69
2572 2636 1.208358 GACGGCGCAGTTAAAACCC 59.792 57.895 15.89 0.00 0.00 4.11
2607 2671 5.758784 GGATATAATGGCCTACCGCTATTTC 59.241 44.000 3.32 0.00 45.61 2.17
2611 2675 3.990369 AGGATATAATGGCCTACCGCTA 58.010 45.455 3.32 0.00 39.70 4.26
2612 2676 2.834113 AGGATATAATGGCCTACCGCT 58.166 47.619 3.32 0.00 39.70 5.52
2619 2704 1.472728 CGGCGGTAGGATATAATGGCC 60.473 57.143 0.00 0.00 36.01 5.36
2639 2724 1.130561 GACTCTACCGCCAACAATTGC 59.869 52.381 5.05 0.00 0.00 3.56
2656 2741 2.956333 TGCGGTGTAGTATATGCAGACT 59.044 45.455 0.00 0.00 0.00 3.24
2666 2751 3.825014 ACTCTCTTTTCTGCGGTGTAGTA 59.175 43.478 0.00 0.00 0.00 1.82
2771 2856 0.662374 CTGGCTGTTTCTTTGCTGCG 60.662 55.000 0.00 0.00 0.00 5.18
2775 2860 2.483491 CTCTCTCTGGCTGTTTCTTTGC 59.517 50.000 0.00 0.00 0.00 3.68
2788 2873 4.949238 TCTGTCATCCTTTCTCTCTCTCTG 59.051 45.833 0.00 0.00 0.00 3.35
2798 2883 4.343526 TGGCTCTATCTCTGTCATCCTTTC 59.656 45.833 0.00 0.00 0.00 2.62
2827 2912 3.998110 GCTGCATGCGCTAGCTCG 61.998 66.667 21.78 14.83 45.42 5.03
2861 2946 1.906824 CCATGCCTCCATCCCATGC 60.907 63.158 0.00 0.00 36.04 4.06
2874 2959 1.938577 CACAGCTACAGTGATCCATGC 59.061 52.381 0.00 0.00 39.30 4.06
2891 2976 2.577700 TGCATGCTATGATGATGCACA 58.422 42.857 20.33 0.00 45.76 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.