>input_sequence_64219
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-------------------------------------------------------ATGGCCGCCTCCTACATAGCGGTAT
TGCTCATCCTCGCCGCAGTTGCCCCACGCCCCTCCTCGGCTCGGCACGTCGTCACCTTCATCCCTAGTCGCGGCGTCTCC
CCCTCCTCCCTGGCCTGGGACCCCACCGCTCAGCACTTCGTCGTCGCCGGCGGAGGCGACGCCGTCCTATCCGTATCCGA
CGCCGGCGTGACCGAATCGATCGCGTCCCCCGGTGCCTCCGCAGTCGCCGTTGACGACCGCCGCCGTCGTCTCATAGTAG
CGTCCGCCGGTTCCGTCTCCGCTTTCGACCTCCGCACCCCTCGCCCCCATCGCCTCCTCTTCTCCACCACGCTCCCCGAC
CCCGCCGCGCCCGGCGGCGTCGCCGTGGACCCACAATCTGGCGTCGCCTTCCTCACCTTGGGCGCCCAAATCTACAGCCT
TTCCCCTGACGGCGACCTCGCCGCGCTCCCTGCTTCGCCCGTCTATGGCTCGGAGCCCCTTTCCTCCCTCACCGCACACG
TGAGCCGCGGGTTCCTCCTCGTCGGCCGTCCCAGCACCGGCCACCTCCTCCGCGTCGACATGGAGGACGGATCCGCAAGA
GCCGTTTCAGGGGCCTTTACGCCCCCCACGCCGATCGCCGTCGCGGTGCGGAGCGATGGGACGGTGGCGGTGGGCGGGGC
CACGACTCTGCGCCTGGTCTGGAGCAACGACGGGTGGGTGTCTTGTGCGGAGCATGACGTGGGGGAACCGGATGGCGCTG
TCGC------------GGCGGTGGCGGTAAGGGAGCGGAAGCGGTTGTACGCGCTGGTGGAGGCGGAGGTGGAGGGGAAG
AGGGAATGGCGGATCGAGGAGGTGGAGTGGAAAAAGGAGGGGGAGGGGGAGATGGTGGCGCTGTTAATCTTGGTCGGCGC
CGCCCTCGCCATCTTCATGTTCTGGAGGTTCCAGATGCGGCAGCTCGCCGGCAACATGAACAAGAAGATCAGATAG----
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>chr3B_1_TraesCS3B01G247000
AATATAGTTCTAGCATGAATAATAAACATTTATCATGAATTAAGGAAATAAATAATAACTTTATTATTGCCTCTAGGGCA
TATTTCCTTCACCCCCCTCTGGACCCCTCTTCTCGTTCCTTTCAGGAGGCGAGAATGTCAGGCTCCAAGGGTCATGACCC
TCTTCTAAATCAGGCCATCTCGATGGAATGAGCCATGAGACTTGGGTTTGGCCCAGTTACGCGAATAGGCAAAAGGTTTA
TAAAGGAGAAGCTAGGCAGAGGAGGACAACGAATTGATTTGTTAATCATCTTCAGCTTCCCATCTTTGCTTCTATTCCCC
ACCCCTCCTCTTGGATCCCTCTCATGCCTTGTTGATTTCTCACCCCGA-CCTTTGTATTCGCAATTTATATCCATATATG
TTGGTGCTAATCCAGTTCTTCGTCCCATCTCTATGCATTGGTCT-----------CCAAGTAGAAATA--TTTTTTGTAA
TCCAACAATTGATCATGGTAAGGATGACCAATGGAGTTATCCCAAAAATTCTGCTATACATGTGGATAATTAAAACGTTT
CACGGGTAGTGACCTAAGAACATGTACAATGGTGCTATCTTAGGTGTGCCACATATGATAATTGCTGAGGTGGATGAGAG
AGAATTCACTTATTTAAGAGATGATATCTTAGCCCAATATATGTCACCATAATTTTGGAAATAGCTAGTTATCTTAGATA
AGATTAAGAGGTAACCCCTTGTGTACATGTTGCATTGCCATCTTTAAATTACATGCAAGGTTTATGATAAAGCTATCATA
TCAACGATTGTACATGTCCTAAATATTTTGTTATTACATGTGGCAAGCGCACATGATGGATTGATCAAGTGGCTAGGGAG
CC-GCTAGGGCCGAGAATTTTTGTTATCACGCGTGCTCTAGCTGTTCGCTTTGATCCTCGAGGCCATAACTAGTCAAAGA
CGGGTTCAGATCGTCTTCTTCCGATTGAATCTACCCACAACCCAACCCTTCCAACATGGCCGCCTCCTACATAGCGGTAT
TGCTCATCCTCGCCGCAGTTGCCCCACGCCCCTCCTCGGCTCGGCACGTCGTCACCTTCATCCCTAGTCGCGGCGTCTCC
CCCTCCTCCCTGGCCTGGGACCCCACCGCTCAGCACTTCGTCGTCGCCGGCGGAGGCGACGCCGTCCTATCCGTATCCGA
CGCCGGCGTGACCGAATCGATCGCGTCCCCCGGTGCCTCCGCAGTCGCCGTTGACGACCGCCGCCGTCGTCTCATAGTAG
CGTCCGCCGGTTCCGTCTCCGCTTTCGACCTCCGCACCCCTCGCCCCCATCGCCTCCTCTTCTCCACCACGCTCCCCGAC
CCCGCCGCGCCCGGCGGCGTCGCCGTGGACCCACAATCTGGCGTCGCCTTCCTCACCTTGGGCGCCCAAATCTACAGCCT
TTCCCCTGACGGCGACCTCGCCGCGCTCCCTGCTTCGCCCGTCTATGGCTCGGAGCCCCTTTCCTCCCTCACCGCACACG
TGAGCCGCGGGTTCCTCCTCGTCGGCCGTCCCAGCACCGGCCACCTCCTCCGCGTCGACATGGAGGACGGATCCGCAAGA
GCCGTTTCAGGGGCCTTTACGCCCCCCACGCCGATCGCCGTCGCGGTGCGGAGCGATGGGACGGTGGCGGTGGGCGGGGC
CACGACTCTGCGCCTGGTCTGGAGCAACGACGGGTGGGTGTCTTGTGCGGAGCATGACGTGGGGGAACCGGATGGCGCTG
TCGC------------GGCGGTGGCGGTAAGGGAGCGGAAGCGGTTGTACGCGCTGGTGGAGGCGGAGGTGGAGGGGAAG
AGGGAATGGCGGATCGAGGAGGTGGAGTGGAAAAAGGAGGGGGAGGGGGAGATGGTGGCGCTGTTAATCTTGGTCGGCGC
CGCCCTCGCCATCTTCATGTTCTGGAGGTTCCAGATGCGGCAGCTCGCCGGCAACATGAACAAGAAGATCAGATAGAAGG
ATCATAGTGCCT---GGCCATCCCCAGCTTTA-TTTTTTATTTCCTTCTGCATTTAGTTGACGCAGGTATATTTGTGTAT
ACAGTATTAGACATGTTATAATTATCAGTTTTCATTAACTGTGAATCCCTTGATCTTTGCTTGCTCGGTGGTTTTG----
-----------ATGTAATAGATTCCTTTTCCTTTCTCAGAATCACGATGTAATGGAATTGGGCAT---------------
AAATAGTGGATGATGGAGTTGCGGACCCATGGTTGATTGCATCTCTTTTGACATTCTAGTATGTGCTGTCCTTCCTCACA
GTGGAGATTGGTTTCTTCAATTTATCGTTGTGTGCGCCGTCCGGCACGGTGGCACAGTCAGAGCACACACACGCCAGAGG
ACTAGCGCACAATCACACACCCCGCGCACACCAGCAGATAGCACGCACGCACGCAAGTATACAGCGCGCACGAGCGAGCA
GCGGGCGGAGGCAAAATTTCGTGTTTTGACCTTTTT-TTAAACCTATTCGAGATTTGACCCCGGTTTGTAAAAATTTCAA
GGTCTGAT-CTTTTTGCTACCGCCACAGACTTTGACGATAAGGTATAACATGCTATCGCCACGGGCTATGGCGATGGGTT
TTAACTGCGCCGTCACGCCGTCGTAACGTGGAAATA---------------------GCGGTAGGCCATTATATCCTACC
GCCGCAATTGTTGGCGGTAGAGTCTGCATATACTACACCGCAGAAAAGAGAGTAGCTTCTCTGCCGCTCTAGGCCGTGCC
CTAGTCCTCTAGCTGCCGCTCTAGGCCTTGCCCTAGTCCTGGGGCTGAAACACCACGCAGCAAAGAAACAGCCAGAGAGA
GAGAAAGGATGACAGAGATAGAGCCAGAGCTCGAGCTAGCGCATGCAGCTAGCTGCAGAAGCAACGCATGGGATGGAGGC
ATGGATCACTGTAGCTGTGCATCATCATAGCATGCATGTCTGGTGGCAGGGGTTCTCCATTTAAGAAATATTTCCTGTAC
TATATGCATGGTT
>chr3D_236
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---------------------------------------------------------------------------GTTTA
TAAAGGAGAAGCTAGACAGAGGAGGACAGCGAATTGATTCGTGAATCATCTTCAGCTTCCCATCTTTGCTTCTACCCCTC
A-------TCTTGGATCCCTCTCATGCCTTGCTGATTTCTCACCCCGAACCTTTGTATTCGCATTTTATATCCACATATA
TTGATGTTGATCCAGTTGTTCCTCCCATCTCTATGCATTGGTCTAGACAAAATCTCCAAGTAAAAATACTTTTTTTGTAA
TCCAACAATCGATCATGGTAAGGATGACCAATGGAGATATCCCAAAAATTCTGCTATACATGTGGATAATTAAAACGTTT
CACGGGTAGTGACCTAAATTTC----------------------------------------------------------
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---------------------------TTGTTATTACAAGTGGCAAGCGCATATGATGGATTGATCAAGTGGCTAGCGAG
CC-GCTAGGGCCGATAATTTTTGTTATCACGCGTGCTCTAGCTGTTGGCTTTGATCCTCGAGGCCATAACTAGTCAAAGA
CGGGCTCAGATCGTCTTCTTCCGATTGAATCTACCCACAACCCAACCCTTCCAACATGGCCGCCTCCTACATAGCGGTCT
TGCTCATCCTCGCCGCAGTTGCCCCACGCCCCTCCTCCGCGCGGCACGTCGTCACCTTCATCCCTAGTCGCGGCGTCTCC
CCCTCCTCCCTGGCCTGGGACCCCACCGCTCAGCACTTCGTCGTCGCCGGCGGAGGCGACGCCGTCCTATCCGTATCCGA
CGCCGGCGTGACCGAATCGATCGCGTCCCCCGGTGCCTCCGCAGTCGCCGTTGATGACCGCCGCCGTCGCCTCATAGTAG
CGTCCGCCGGTTCCGTCTCCGCTTTCGACCTCCGCACCCCTCGGCCCCATCGCCTCCTCTTCTCCACCACGCTCCCCGAC
CCCGCCGCGCCCGGCGGCGTCGCCGTTGACCCACAATCTGGCGTCGCATTCCTCACCTTGGGCGCCCAAATCTACAGCCT
TTCCCCTGACGGCGACCTCGCCGCGCTCCCTGCTTCGCCCGTCTATGGCTCGGAGCCCCTTTCCTCCCTCACCGCGCACG
TGAGCCGCGGGTTCCTCCTCGTCGGCCGTCCCAGCACCGGCCACCTCCTCCGCGTCGACATGGAGGACGGATCCGCAAGA
GCCGTTTCAGGGCCCTTTACGCCCGCCACGCCGGTCGCCGTCGCGGTGCGGAGCGATGGGACGGTGGCGGTGGGCGGGGC
CGCGACTCTGCGCCTGGTCGGGAGCAACGACGGGTGGGTGTCTTGCGCGGAGCATGACGTGGGGGAACCGAACGGCGCCG
TCGCGGCGGTGGCGGTGGCGGTGGCGGTAAGGGAGCGGAAGCGGGTGTACGCGCTGGTGGAGGCGGAGGTGGAGGGGAAG
AGGGAATGGCGGATCGAGGAGGTGGACTGGAAAAAGGAGGGGGAGGGGGAGATGGTGGCGCTGTTAATCTTGGTCGGCGC
CGCCATCGCCATCTTCATGTTCTGGAGGTTCCAGATGCGGCAGCTCGCCGGCAACATGAACAAGAAGATCAGATAGAAGG
ATCACAGTGCCT---GGCCATCCCCAGCTTTA-CTTTTTATTTCCTTCTGCATTTAGTTGACGCTGGTATACTTGT----
---GTATTAGACATGTTATAATTATCAGTTTTCATTAACTGTGAATCCCTTGATCTTTGCTTGCTCGGTGGTTTTGCTTG
GCACATCCACGATGTAATAGATTCCTTTTCCTTTCTCAGAATCACGATGTAATGGAATTGGGCATAACTGATACTTGTAA
AAATAGTGGATGATGGAGTTGCGGAGCCATGGTTGATTGCATCCCTTTTGACGTTCTACTATGTGCTGTCCTTCCTCACA
GTGGAAATTGGTTTCTTCAATTTATCGTTGTGTGCGCCGTCCGGCACGGTGGCACAGTCAGAGCACACACACGCCAG--G
ACCAGCGCACAAGCACACACCACGCGCACACCAGCAGATAGCACGCACG-------GTATACAGCGCGCACGAGCGAGCA
GCGGGCGGAG----------------------------------------------------------------------
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>chr3A_820
TTACAAA-------------------------------------------------------------------------
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----------------------------------------TGGCAAGCGCACATGATGGATCGATCAAGTGGCTAGCGAG
CCGGCTAGGGCCGGGAATTTTTGTTATCACGCGTGCTCTAGCTGTTCGTTTTGATCCTCGAAGCCATAACTAGTCAAAGA
CGGGCTCAGATCGTCTTCTTCCGATTGAATCTACCCACAACCCAACCCTTCCAACATGGCCGCCTCCTACATAGCACTCT
TGCTCATCCTCGCCGCAGTTGCCCCACGCCCCTCCTCCGCGCGGCACGTCGTCTCCTTCATCCCTAGTCGCGGCGTCTCC
CCCTCCTCCCTGGCCTGGGACCCCACCGCTCAGCACTTCGTCGTCGCCGGCGGAGGCGACGCCGTCCTTTCCGTATCCGA
CGCCGGCGTGACCGAATTGATCGCGTCCCCCGGTGCCTCCGCAGTCGCCGTTGACGACCGCCGCCGTCGCCTCATAGTAG
CGTCCGCCGGTTCCGTCTCCGCTTTCGACCTCCGCACCCCTCGGCCCCATCGCCTCCTCTTCTCCACCACGCTCCCCGAC
CCCGCCGCGCCCGGCGGCGTCGCCGTGGACCCACAATCTGGCGTCGCCTTCCTCACCTTGGGCGCCCAAATCTACAGCCT
TTCCACTGACGGCGACCTCGCCGCGCTCCCTGCTTCGCCCGTCTATGGCTCGGAGCCCCTTTCCTCCCTCGCCGCACACG
TGAGCCGGGGGTTCCTCCTCGTCGGCCGTCCCAGCACCGGCCACCTCCTCCGCGTCGACATGGAGGACGGATCCGCAAGA
GACGTTTCAGGGCCCTTTACGCCCCCCACGCCGGTCGCCGTCGCGGTGCGGAGCGATGGGATGGTGGCGGTGGGCGGGGC
CGCGACTCTGCGCCTGGTCGGGAGCAACGACGGGTGGGTGTCTTGCGCGGAGCATGACGTGGGGGAACCGGACGGCTCCG
TCGCGGCGGT------GGCGGTGGCGGTAAGGGAGCGGAAGCGGGTGTACGCGCTGGTGGAGGCGGAGGTGGAGGGGAAG
AGGGAATGGCGGATCGAGGAGGTGGAGTGGAAAAAGGAGGGGGAGGGGGAGATGGTGGCGCTGTTAATCTTGGTCGGCGC
CGCCCTCGCCATCTTCATGTTCTGGAGGTTCCAGATGCGGCAGCTCGCCGGCAACATGAACAAGAAGATCAGATAGAAGG
ATCACAGTGCCTGGCGGCCATCCCCAGCTTTATTTTTTTATTTCCTTCTGCATTTAGTTGACGCAGGTATTCTTGT----
---GTATTAGACATGTTATAATCAT---TTTTCATTAACTGTGAATCCCTTGATCTTTGCTTGCGCAGTTGTTTTGCTTG
GCACATCCACGATGTAATAGATTC-TTTTCCTTTCTCAGAATCACGATGTAATGGAACTGGGCATAACTGATACTAGTAA
AAATAGTGGATGATGGAGTTGCGGAGCCATGGTTCATTGCATCTCTTTAGACATTCTACTATGTGCCGTCCTTCCTCACA
GTGGAGATTGGCTTCTTCAATTTATCGTTGTGTGCGCCGTCCGGCACGGTGGCACAATCAGAGCACACACACGCCAGAGG
ACCAGCGCACAGGCACACACCACGCGCACACCAGCAGATAGCACGCACGCAC--AAGTATACAGCGCGCATGAGCGAGCA
GCGGGCGGAG----------------------------------------------------------------------
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>chr2B_2429
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---------GGCAAAATTCCATGTTTTGACCCTTTTCTTAAACCTATTCGAAATTTGACCCCGGTTCGTAAAAATTTTGA
GATCTTACCCTTTTTGCTACCGCCACAGACTTTGACGGTAAGGTATAACATGCTACCGCCACAGGCTACGGCGATAGGTT
TTAACTGCGCCATCACGCCGTCGTAACGTGAAAAATACCCTACCGCCATGGTTTCTGGCGGTAAGCCATTATATCCTACC
GCCACAATTGTTGGCGGTAGGGTATGCATACACTACACCGCAGAAAAGAGAGTAGCTTCTCTGCCGCTCTAGGCCGTGCC
CTAATCCTCTAGCTGCCGCTCTAGGCCTTGCCCTAGTCCTGGGGCTGAAACACCATGCAACAAAGAAACAGCAAGAGAGA
GAAAAAGGATGACAGAGATAGAGCCAGAGCTAGAGCTAGCGCATGCAGCTAGCTGCAGAAGCAACACATGGGATGGAGAC
ATGGATCACTGTAGCGGTGCATCATCATAGCATGCATGTCTGGTGGCAGGGGTTCTCCATTTAAGAAATATTTCTTGTAC
TATATGCACGG--
>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---------------S------------S----------S--S-------------------------------SS--S-
-SSSSSSS-----------------------S-------------------------------S----------S----S
---S--S-S--------S---S----------------------------------------S-----------------
---------S--------------------------S-------------------------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------------------------------------S---
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----S-------------------------------------------------------------------------S-
-------------------------------------S--S---------------------------------------
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---------------------------------------------------------------------S----------
-------------------------------------------S------------------------------------
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------------S--------------------S----------------------------------------------
-S-----------------S-------------------------S--------------------------S-----S-
--------------------------------------------S-----------------------------------
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----S------------------------------------------------------------------S----SSSS
SSS-----------------------------------------------------------------------------
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-------------------------S--------------------------------S---------------------
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--S---------S--------S------------------------------SS--------------------------
------------------S-S----------S-------------------S--------------S----------SS-
-S---S-S-----------------------------S-----------------S------S-----S------S----
-----------S------------------S---SS---------------------------S----------------
---S----------------S--S------S-------------------------------------------------
---S---------------------------------------------------S---S------------S-------
--S----------------------------S---------------------------------S------------S-
---------------S----------------------------------------------------------S-----
--------S--SS
>forward_269
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---------AGCTAGGCAGAGGAGGACAA---------------------------------------------------
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>reverse_1270
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---------------------------------------------------------------------TCTCATAGTAG
CGTCCGCCG-----------------------------------------------------------------------
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>forward_326
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------------------------------------------------------------------TGCTTCTATTCCCC
ACCCCT--------------------------------------------------------------------------
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>reverse_2299
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----------------------------------------------------------GTATGTGCTGTCCTTCCTCACA
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