Multiple sequence alignment - TraesCS3B01G239400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G239400 | chr3B | 100.000 | 3593 | 0 | 0 | 1 | 3593 | 377709607 | 377713199 | 0.000000e+00 | 6636 |
1 | TraesCS3B01G239400 | chr3B | 78.017 | 232 | 49 | 2 | 1661 | 1891 | 650071776 | 650072006 | 1.040000e-30 | 145 |
2 | TraesCS3B01G239400 | chr3D | 95.492 | 3372 | 71 | 20 | 258 | 3593 | 283675093 | 283678419 | 0.000000e+00 | 5310 |
3 | TraesCS3B01G239400 | chr3A | 94.450 | 2883 | 70 | 29 | 262 | 3097 | 371321223 | 371324062 | 0.000000e+00 | 4355 |
4 | TraesCS3B01G239400 | chr3A | 87.451 | 255 | 31 | 1 | 3 | 256 | 165328374 | 165328628 | 3.510000e-75 | 292 |
5 | TraesCS3B01G239400 | chr3A | 87.160 | 257 | 28 | 4 | 3 | 256 | 89665200 | 89664946 | 1.630000e-73 | 287 |
6 | TraesCS3B01G239400 | chr3A | 87.109 | 256 | 29 | 4 | 3 | 256 | 715173420 | 715173673 | 1.630000e-73 | 287 |
7 | TraesCS3B01G239400 | chr3A | 75.562 | 356 | 77 | 7 | 1541 | 1891 | 630807070 | 630807420 | 2.220000e-37 | 167 |
8 | TraesCS3B01G239400 | chr1A | 81.373 | 1063 | 180 | 14 | 1530 | 2580 | 589791469 | 589792525 | 0.000000e+00 | 850 |
9 | TraesCS3B01G239400 | chr1D | 81.144 | 1066 | 177 | 20 | 1530 | 2580 | 491794953 | 491796009 | 0.000000e+00 | 833 |
10 | TraesCS3B01G239400 | chr1B | 80.316 | 1077 | 194 | 15 | 1530 | 2594 | 684098148 | 684097078 | 0.000000e+00 | 798 |
11 | TraesCS3B01G239400 | chr4A | 90.196 | 255 | 24 | 1 | 3 | 256 | 96479428 | 96479174 | 7.440000e-87 | 331 |
12 | TraesCS3B01G239400 | chr4A | 87.059 | 255 | 32 | 1 | 3 | 256 | 216015571 | 216015317 | 1.630000e-73 | 287 |
13 | TraesCS3B01G239400 | chr4B | 88.627 | 255 | 26 | 3 | 1 | 254 | 658028132 | 658027880 | 1.250000e-79 | 307 |
14 | TraesCS3B01G239400 | chr5B | 89.362 | 235 | 25 | 0 | 1 | 235 | 496148400 | 496148166 | 2.710000e-76 | 296 |
15 | TraesCS3B01G239400 | chr2A | 87.302 | 252 | 26 | 6 | 3 | 251 | 473605480 | 473605728 | 2.110000e-72 | 283 |
16 | TraesCS3B01G239400 | chr5D | 86.275 | 255 | 33 | 2 | 3 | 255 | 227451003 | 227451257 | 3.530000e-70 | 276 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G239400 | chr3B | 377709607 | 377713199 | 3592 | False | 6636 | 6636 | 100.000 | 1 | 3593 | 1 | chr3B.!!$F1 | 3592 |
1 | TraesCS3B01G239400 | chr3D | 283675093 | 283678419 | 3326 | False | 5310 | 5310 | 95.492 | 258 | 3593 | 1 | chr3D.!!$F1 | 3335 |
2 | TraesCS3B01G239400 | chr3A | 371321223 | 371324062 | 2839 | False | 4355 | 4355 | 94.450 | 262 | 3097 | 1 | chr3A.!!$F2 | 2835 |
3 | TraesCS3B01G239400 | chr1A | 589791469 | 589792525 | 1056 | False | 850 | 850 | 81.373 | 1530 | 2580 | 1 | chr1A.!!$F1 | 1050 |
4 | TraesCS3B01G239400 | chr1D | 491794953 | 491796009 | 1056 | False | 833 | 833 | 81.144 | 1530 | 2580 | 1 | chr1D.!!$F1 | 1050 |
5 | TraesCS3B01G239400 | chr1B | 684097078 | 684098148 | 1070 | True | 798 | 798 | 80.316 | 1530 | 2594 | 1 | chr1B.!!$R1 | 1064 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
388 | 389 | 0.176680 | CAATCTCACCGCTGTAGGCT | 59.823 | 55.000 | 0.00 | 0.0 | 39.13 | 4.58 | F |
1494 | 1532 | 1.070957 | GGAGGCCGCCACTAATACC | 59.929 | 63.158 | 22.24 | 0.0 | 0.00 | 2.73 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2349 | 2393 | 2.437359 | GTGCGCTTCTGGAGGCAT | 60.437 | 61.111 | 9.73 | 0.0 | 35.17 | 4.40 | R |
3113 | 3193 | 0.233590 | TCGATTTTGTTGACGCCACG | 59.766 | 50.000 | 0.00 | 0.0 | 0.00 | 4.94 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.990959 | GGAGGGATTAGCTATGGGAAG | 57.009 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
21 | 22 | 3.252351 | GGAGGGATTAGCTATGGGAAGT | 58.748 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
22 | 23 | 3.653352 | GGAGGGATTAGCTATGGGAAGTT | 59.347 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
23 | 24 | 4.505742 | GGAGGGATTAGCTATGGGAAGTTG | 60.506 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
24 | 25 | 4.307259 | AGGGATTAGCTATGGGAAGTTGA | 58.693 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
25 | 26 | 4.916424 | AGGGATTAGCTATGGGAAGTTGAT | 59.084 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
26 | 27 | 5.373854 | AGGGATTAGCTATGGGAAGTTGATT | 59.626 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
27 | 28 | 6.071320 | GGGATTAGCTATGGGAAGTTGATTT | 58.929 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
28 | 29 | 6.551227 | GGGATTAGCTATGGGAAGTTGATTTT | 59.449 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
29 | 30 | 7.069950 | GGGATTAGCTATGGGAAGTTGATTTTT | 59.930 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
30 | 31 | 9.131791 | GGATTAGCTATGGGAAGTTGATTTTTA | 57.868 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
31 | 32 | 9.952188 | GATTAGCTATGGGAAGTTGATTTTTAC | 57.048 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
32 | 33 | 9.700831 | ATTAGCTATGGGAAGTTGATTTTTACT | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
33 | 34 | 7.631717 | AGCTATGGGAAGTTGATTTTTACTC | 57.368 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
34 | 35 | 6.603599 | AGCTATGGGAAGTTGATTTTTACTCC | 59.396 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
35 | 36 | 6.183360 | GCTATGGGAAGTTGATTTTTACTCCC | 60.183 | 42.308 | 0.00 | 0.00 | 34.76 | 4.30 |
36 | 37 | 5.068215 | TGGGAAGTTGATTTTTACTCCCA | 57.932 | 39.130 | 2.77 | 2.77 | 38.38 | 4.37 |
37 | 38 | 5.650283 | TGGGAAGTTGATTTTTACTCCCAT | 58.350 | 37.500 | 2.77 | 0.00 | 37.09 | 4.00 |
38 | 39 | 6.081356 | TGGGAAGTTGATTTTTACTCCCATT | 58.919 | 36.000 | 2.77 | 0.00 | 37.09 | 3.16 |
39 | 40 | 6.556874 | TGGGAAGTTGATTTTTACTCCCATTT | 59.443 | 34.615 | 2.77 | 0.00 | 37.09 | 2.32 |
40 | 41 | 7.097192 | GGGAAGTTGATTTTTACTCCCATTTC | 58.903 | 38.462 | 0.00 | 0.00 | 34.54 | 2.17 |
41 | 42 | 7.097192 | GGAAGTTGATTTTTACTCCCATTTCC | 58.903 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
42 | 43 | 7.039011 | GGAAGTTGATTTTTACTCCCATTTCCT | 60.039 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
43 | 44 | 7.855784 | AGTTGATTTTTACTCCCATTTCCTT | 57.144 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
44 | 45 | 7.670364 | AGTTGATTTTTACTCCCATTTCCTTG | 58.330 | 34.615 | 0.00 | 0.00 | 0.00 | 3.61 |
45 | 46 | 7.290014 | AGTTGATTTTTACTCCCATTTCCTTGT | 59.710 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
46 | 47 | 7.610580 | TGATTTTTACTCCCATTTCCTTGTT | 57.389 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
47 | 48 | 8.028652 | TGATTTTTACTCCCATTTCCTTGTTT | 57.971 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
48 | 49 | 7.930865 | TGATTTTTACTCCCATTTCCTTGTTTG | 59.069 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
49 | 50 | 5.799827 | TTTACTCCCATTTCCTTGTTTGG | 57.200 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
50 | 51 | 1.970640 | ACTCCCATTTCCTTGTTTGGC | 59.029 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
51 | 52 | 1.969923 | CTCCCATTTCCTTGTTTGGCA | 59.030 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
52 | 53 | 2.568509 | CTCCCATTTCCTTGTTTGGCAT | 59.431 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
53 | 54 | 3.768757 | CTCCCATTTCCTTGTTTGGCATA | 59.231 | 43.478 | 0.00 | 0.00 | 0.00 | 3.14 |
54 | 55 | 4.360889 | TCCCATTTCCTTGTTTGGCATAT | 58.639 | 39.130 | 0.00 | 0.00 | 0.00 | 1.78 |
55 | 56 | 4.161942 | TCCCATTTCCTTGTTTGGCATATG | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
56 | 57 | 4.444536 | CCATTTCCTTGTTTGGCATATGG | 58.555 | 43.478 | 4.56 | 0.00 | 0.00 | 2.74 |
57 | 58 | 4.080975 | CCATTTCCTTGTTTGGCATATGGT | 60.081 | 41.667 | 4.56 | 0.00 | 31.01 | 3.55 |
58 | 59 | 4.533919 | TTTCCTTGTTTGGCATATGGTG | 57.466 | 40.909 | 4.56 | 0.00 | 0.00 | 4.17 |
59 | 60 | 2.455557 | TCCTTGTTTGGCATATGGTGG | 58.544 | 47.619 | 4.56 | 0.00 | 0.00 | 4.61 |
60 | 61 | 1.481772 | CCTTGTTTGGCATATGGTGGG | 59.518 | 52.381 | 4.56 | 0.00 | 0.00 | 4.61 |
61 | 62 | 2.455557 | CTTGTTTGGCATATGGTGGGA | 58.544 | 47.619 | 4.56 | 0.00 | 0.00 | 4.37 |
62 | 63 | 2.612285 | TGTTTGGCATATGGTGGGAA | 57.388 | 45.000 | 4.56 | 0.00 | 0.00 | 3.97 |
63 | 64 | 3.113191 | TGTTTGGCATATGGTGGGAAT | 57.887 | 42.857 | 4.56 | 0.00 | 0.00 | 3.01 |
64 | 65 | 3.448934 | TGTTTGGCATATGGTGGGAATT | 58.551 | 40.909 | 4.56 | 0.00 | 0.00 | 2.17 |
65 | 66 | 4.614475 | TGTTTGGCATATGGTGGGAATTA | 58.386 | 39.130 | 4.56 | 0.00 | 0.00 | 1.40 |
66 | 67 | 4.648762 | TGTTTGGCATATGGTGGGAATTAG | 59.351 | 41.667 | 4.56 | 0.00 | 0.00 | 1.73 |
67 | 68 | 4.534647 | TTGGCATATGGTGGGAATTAGT | 57.465 | 40.909 | 4.56 | 0.00 | 0.00 | 2.24 |
68 | 69 | 5.654901 | TTGGCATATGGTGGGAATTAGTA | 57.345 | 39.130 | 4.56 | 0.00 | 0.00 | 1.82 |
69 | 70 | 4.980573 | TGGCATATGGTGGGAATTAGTAC | 58.019 | 43.478 | 4.56 | 0.00 | 0.00 | 2.73 |
70 | 71 | 4.000988 | GGCATATGGTGGGAATTAGTACG | 58.999 | 47.826 | 4.56 | 0.00 | 0.00 | 3.67 |
71 | 72 | 4.000988 | GCATATGGTGGGAATTAGTACGG | 58.999 | 47.826 | 4.56 | 0.00 | 0.00 | 4.02 |
72 | 73 | 4.575885 | CATATGGTGGGAATTAGTACGGG | 58.424 | 47.826 | 0.00 | 0.00 | 0.00 | 5.28 |
73 | 74 | 2.250921 | TGGTGGGAATTAGTACGGGA | 57.749 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
74 | 75 | 2.766736 | TGGTGGGAATTAGTACGGGAT | 58.233 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
75 | 76 | 3.926198 | TGGTGGGAATTAGTACGGGATA | 58.074 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
76 | 77 | 4.296912 | TGGTGGGAATTAGTACGGGATAA | 58.703 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
77 | 78 | 4.720773 | TGGTGGGAATTAGTACGGGATAAA | 59.279 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
78 | 79 | 5.191323 | TGGTGGGAATTAGTACGGGATAAAA | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
79 | 80 | 5.528690 | GGTGGGAATTAGTACGGGATAAAAC | 59.471 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
80 | 81 | 6.351711 | GTGGGAATTAGTACGGGATAAAACT | 58.648 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
81 | 82 | 6.481313 | GTGGGAATTAGTACGGGATAAAACTC | 59.519 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
82 | 83 | 6.384886 | TGGGAATTAGTACGGGATAAAACTCT | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
83 | 84 | 6.704937 | GGGAATTAGTACGGGATAAAACTCTG | 59.295 | 42.308 | 0.00 | 0.00 | 0.00 | 3.35 |
84 | 85 | 6.202379 | GGAATTAGTACGGGATAAAACTCTGC | 59.798 | 42.308 | 0.00 | 0.00 | 0.00 | 4.26 |
85 | 86 | 5.927281 | TTAGTACGGGATAAAACTCTGCT | 57.073 | 39.130 | 0.00 | 0.00 | 0.00 | 4.24 |
86 | 87 | 4.388378 | AGTACGGGATAAAACTCTGCTC | 57.612 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
87 | 88 | 3.767673 | AGTACGGGATAAAACTCTGCTCA | 59.232 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
88 | 89 | 3.914426 | ACGGGATAAAACTCTGCTCAT | 57.086 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
89 | 90 | 3.798202 | ACGGGATAAAACTCTGCTCATC | 58.202 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
90 | 91 | 3.197766 | ACGGGATAAAACTCTGCTCATCA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
91 | 92 | 4.191544 | CGGGATAAAACTCTGCTCATCAA | 58.808 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
92 | 93 | 4.818546 | CGGGATAAAACTCTGCTCATCAAT | 59.181 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
93 | 94 | 5.297776 | CGGGATAAAACTCTGCTCATCAATT | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
94 | 95 | 6.483307 | CGGGATAAAACTCTGCTCATCAATTA | 59.517 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
95 | 96 | 7.012327 | CGGGATAAAACTCTGCTCATCAATTAA | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
96 | 97 | 8.131731 | GGGATAAAACTCTGCTCATCAATTAAC | 58.868 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
97 | 98 | 8.677300 | GGATAAAACTCTGCTCATCAATTAACA | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
100 | 101 | 6.506500 | AACTCTGCTCATCAATTAACAAGG | 57.493 | 37.500 | 0.00 | 0.00 | 0.00 | 3.61 |
101 | 102 | 5.564550 | ACTCTGCTCATCAATTAACAAGGT | 58.435 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
102 | 103 | 6.711277 | ACTCTGCTCATCAATTAACAAGGTA | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 3.08 |
103 | 104 | 6.595716 | ACTCTGCTCATCAATTAACAAGGTAC | 59.404 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
104 | 105 | 5.580691 | TCTGCTCATCAATTAACAAGGTACG | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
105 | 106 | 4.094294 | TGCTCATCAATTAACAAGGTACGC | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 4.42 |
106 | 107 | 4.495844 | GCTCATCAATTAACAAGGTACGCC | 60.496 | 45.833 | 0.00 | 0.00 | 0.00 | 5.68 |
107 | 108 | 4.580868 | TCATCAATTAACAAGGTACGCCA | 58.419 | 39.130 | 0.00 | 0.00 | 37.19 | 5.69 |
108 | 109 | 5.189928 | TCATCAATTAACAAGGTACGCCAT | 58.810 | 37.500 | 0.00 | 0.00 | 37.19 | 4.40 |
109 | 110 | 4.955925 | TCAATTAACAAGGTACGCCATG | 57.044 | 40.909 | 0.00 | 0.00 | 39.24 | 3.66 |
110 | 111 | 3.692101 | TCAATTAACAAGGTACGCCATGG | 59.308 | 43.478 | 7.63 | 7.63 | 37.76 | 3.66 |
111 | 112 | 3.637911 | ATTAACAAGGTACGCCATGGA | 57.362 | 42.857 | 18.40 | 0.00 | 37.76 | 3.41 |
112 | 113 | 3.420300 | TTAACAAGGTACGCCATGGAA | 57.580 | 42.857 | 18.40 | 0.00 | 37.76 | 3.53 |
113 | 114 | 2.279935 | AACAAGGTACGCCATGGAAA | 57.720 | 45.000 | 18.40 | 0.00 | 37.76 | 3.13 |
114 | 115 | 2.279935 | ACAAGGTACGCCATGGAAAA | 57.720 | 45.000 | 18.40 | 0.00 | 37.76 | 2.29 |
115 | 116 | 2.588620 | ACAAGGTACGCCATGGAAAAA | 58.411 | 42.857 | 18.40 | 0.00 | 37.76 | 1.94 |
135 | 136 | 5.420725 | AAAAATAGGTGGGAATTGGCTTC | 57.579 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
145 | 146 | 3.857549 | GAATTGGCTTCCTCAACTTCC | 57.142 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
146 | 147 | 2.978156 | ATTGGCTTCCTCAACTTCCA | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
147 | 148 | 2.978156 | TTGGCTTCCTCAACTTCCAT | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
148 | 149 | 2.978156 | TGGCTTCCTCAACTTCCATT | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
149 | 150 | 2.795329 | TGGCTTCCTCAACTTCCATTC | 58.205 | 47.619 | 0.00 | 0.00 | 0.00 | 2.67 |
150 | 151 | 2.095461 | GGCTTCCTCAACTTCCATTCC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
151 | 152 | 2.095461 | GCTTCCTCAACTTCCATTCCC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
152 | 153 | 2.728007 | CTTCCTCAACTTCCATTCCCC | 58.272 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
153 | 154 | 2.059756 | TCCTCAACTTCCATTCCCCT | 57.940 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
154 | 155 | 2.358258 | TCCTCAACTTCCATTCCCCTT | 58.642 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
155 | 156 | 2.308866 | TCCTCAACTTCCATTCCCCTTC | 59.691 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
156 | 157 | 2.621668 | CCTCAACTTCCATTCCCCTTCC | 60.622 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
157 | 158 | 1.004277 | TCAACTTCCATTCCCCTTCCG | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
158 | 159 | 1.004277 | CAACTTCCATTCCCCTTCCGA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.55 |
159 | 160 | 0.618981 | ACTTCCATTCCCCTTCCGAC | 59.381 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
160 | 161 | 0.912486 | CTTCCATTCCCCTTCCGACT | 59.088 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
161 | 162 | 1.282157 | CTTCCATTCCCCTTCCGACTT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
162 | 163 | 2.257391 | TCCATTCCCCTTCCGACTTA | 57.743 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
163 | 164 | 2.553464 | TCCATTCCCCTTCCGACTTAA | 58.447 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
164 | 165 | 2.914278 | TCCATTCCCCTTCCGACTTAAA | 59.086 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
165 | 166 | 3.014623 | CCATTCCCCTTCCGACTTAAAC | 58.985 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
166 | 167 | 3.308188 | CCATTCCCCTTCCGACTTAAACT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
167 | 168 | 4.332828 | CATTCCCCTTCCGACTTAAACTT | 58.667 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
168 | 169 | 3.690475 | TCCCCTTCCGACTTAAACTTC | 57.310 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
169 | 170 | 2.303890 | TCCCCTTCCGACTTAAACTTCC | 59.696 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
170 | 171 | 2.039348 | CCCCTTCCGACTTAAACTTCCA | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
171 | 172 | 3.308188 | CCCCTTCCGACTTAAACTTCCAT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
172 | 173 | 4.332828 | CCCTTCCGACTTAAACTTCCATT | 58.667 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
173 | 174 | 4.395231 | CCCTTCCGACTTAAACTTCCATTC | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
174 | 175 | 4.395231 | CCTTCCGACTTAAACTTCCATTCC | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
175 | 176 | 3.946606 | TCCGACTTAAACTTCCATTCCC | 58.053 | 45.455 | 0.00 | 0.00 | 0.00 | 3.97 |
176 | 177 | 3.585732 | TCCGACTTAAACTTCCATTCCCT | 59.414 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
177 | 178 | 3.939592 | CCGACTTAAACTTCCATTCCCTC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
178 | 179 | 4.323562 | CCGACTTAAACTTCCATTCCCTCT | 60.324 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
179 | 180 | 5.105064 | CCGACTTAAACTTCCATTCCCTCTA | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
180 | 181 | 6.403878 | CGACTTAAACTTCCATTCCCTCTAA | 58.596 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
181 | 182 | 7.048512 | CGACTTAAACTTCCATTCCCTCTAAT | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
182 | 183 | 7.553044 | CGACTTAAACTTCCATTCCCTCTAATT | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
183 | 184 | 9.901172 | GACTTAAACTTCCATTCCCTCTAATTA | 57.099 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
187 | 188 | 8.950007 | AAACTTCCATTCCCTCTAATTAAACA | 57.050 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
188 | 189 | 8.581253 | AACTTCCATTCCCTCTAATTAAACAG | 57.419 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
189 | 190 | 7.699878 | ACTTCCATTCCCTCTAATTAAACAGT | 58.300 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
190 | 191 | 7.611855 | ACTTCCATTCCCTCTAATTAAACAGTG | 59.388 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
191 | 192 | 7.265599 | TCCATTCCCTCTAATTAAACAGTGA | 57.734 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
192 | 193 | 7.695055 | TCCATTCCCTCTAATTAAACAGTGAA | 58.305 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
193 | 194 | 7.610305 | TCCATTCCCTCTAATTAAACAGTGAAC | 59.390 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
194 | 195 | 7.611855 | CCATTCCCTCTAATTAAACAGTGAACT | 59.388 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
195 | 196 | 9.014297 | CATTCCCTCTAATTAAACAGTGAACTT | 57.986 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
196 | 197 | 8.990163 | TTCCCTCTAATTAAACAGTGAACTTT | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
197 | 198 | 8.990163 | TCCCTCTAATTAAACAGTGAACTTTT | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
207 | 208 | 9.621629 | TTAAACAGTGAACTTTTAATCTCCTCA | 57.378 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
208 | 209 | 7.497925 | AACAGTGAACTTTTAATCTCCTCAC | 57.502 | 36.000 | 0.00 | 0.00 | 33.51 | 3.51 |
209 | 210 | 5.998363 | ACAGTGAACTTTTAATCTCCTCACC | 59.002 | 40.000 | 0.00 | 0.00 | 33.75 | 4.02 |
210 | 211 | 5.412904 | CAGTGAACTTTTAATCTCCTCACCC | 59.587 | 44.000 | 0.00 | 0.00 | 33.75 | 4.61 |
211 | 212 | 4.700692 | GTGAACTTTTAATCTCCTCACCCC | 59.299 | 45.833 | 0.00 | 0.00 | 0.00 | 4.95 |
212 | 213 | 4.352595 | TGAACTTTTAATCTCCTCACCCCA | 59.647 | 41.667 | 0.00 | 0.00 | 0.00 | 4.96 |
213 | 214 | 5.015178 | TGAACTTTTAATCTCCTCACCCCAT | 59.985 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
214 | 215 | 6.216662 | TGAACTTTTAATCTCCTCACCCCATA | 59.783 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
215 | 216 | 6.652205 | ACTTTTAATCTCCTCACCCCATAA | 57.348 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
216 | 217 | 6.424032 | ACTTTTAATCTCCTCACCCCATAAC | 58.576 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
217 | 218 | 6.217693 | ACTTTTAATCTCCTCACCCCATAACT | 59.782 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
218 | 219 | 5.888982 | TTAATCTCCTCACCCCATAACTC | 57.111 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
219 | 220 | 2.176247 | TCTCCTCACCCCATAACTCC | 57.824 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
220 | 221 | 1.132500 | CTCCTCACCCCATAACTCCC | 58.868 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
221 | 222 | 0.419865 | TCCTCACCCCATAACTCCCA | 59.580 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
222 | 223 | 1.010793 | TCCTCACCCCATAACTCCCAT | 59.989 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
223 | 224 | 1.852965 | CCTCACCCCATAACTCCCATT | 59.147 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
224 | 225 | 2.158608 | CCTCACCCCATAACTCCCATTC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.67 |
225 | 226 | 1.850345 | TCACCCCATAACTCCCATTCC | 59.150 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
226 | 227 | 1.133482 | CACCCCATAACTCCCATTCCC | 60.133 | 57.143 | 0.00 | 0.00 | 0.00 | 3.97 |
227 | 228 | 0.482887 | CCCCATAACTCCCATTCCCC | 59.517 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
228 | 229 | 1.231018 | CCCATAACTCCCATTCCCCA | 58.769 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
229 | 230 | 1.788915 | CCCATAACTCCCATTCCCCAT | 59.211 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
230 | 231 | 2.225117 | CCCATAACTCCCATTCCCCATC | 60.225 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
231 | 232 | 2.718609 | CCATAACTCCCATTCCCCATCT | 59.281 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
232 | 233 | 3.140895 | CCATAACTCCCATTCCCCATCTT | 59.859 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
233 | 234 | 4.387891 | CCATAACTCCCATTCCCCATCTTT | 60.388 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
234 | 235 | 5.162991 | CCATAACTCCCATTCCCCATCTTTA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
235 | 236 | 4.965283 | AACTCCCATTCCCCATCTTTAA | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 1.52 |
236 | 237 | 5.487861 | AACTCCCATTCCCCATCTTTAAT | 57.512 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
237 | 238 | 5.487861 | ACTCCCATTCCCCATCTTTAATT | 57.512 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
238 | 239 | 5.458595 | ACTCCCATTCCCCATCTTTAATTC | 58.541 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
239 | 240 | 4.814967 | TCCCATTCCCCATCTTTAATTCC | 58.185 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
240 | 241 | 3.903714 | CCCATTCCCCATCTTTAATTCCC | 59.096 | 47.826 | 0.00 | 0.00 | 0.00 | 3.97 |
241 | 242 | 3.903714 | CCATTCCCCATCTTTAATTCCCC | 59.096 | 47.826 | 0.00 | 0.00 | 0.00 | 4.81 |
242 | 243 | 4.389034 | CCATTCCCCATCTTTAATTCCCCT | 60.389 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
243 | 244 | 5.162881 | CCATTCCCCATCTTTAATTCCCCTA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
244 | 245 | 6.381250 | CATTCCCCATCTTTAATTCCCCTAA | 58.619 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
245 | 246 | 5.397553 | TCCCCATCTTTAATTCCCCTAAC | 57.602 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
246 | 247 | 4.169264 | TCCCCATCTTTAATTCCCCTAACC | 59.831 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
247 | 248 | 4.078863 | CCCCATCTTTAATTCCCCTAACCA | 60.079 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
248 | 249 | 5.524535 | CCCATCTTTAATTCCCCTAACCAA | 58.475 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
249 | 250 | 5.961421 | CCCATCTTTAATTCCCCTAACCAAA | 59.039 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
250 | 251 | 6.127168 | CCCATCTTTAATTCCCCTAACCAAAC | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 2.93 |
251 | 252 | 6.405397 | CCATCTTTAATTCCCCTAACCAAACG | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 3.60 |
252 | 253 | 4.460034 | TCTTTAATTCCCCTAACCAAACGC | 59.540 | 41.667 | 0.00 | 0.00 | 0.00 | 4.84 |
253 | 254 | 1.170442 | AATTCCCCTAACCAAACGCG | 58.830 | 50.000 | 3.53 | 3.53 | 0.00 | 6.01 |
254 | 255 | 1.310216 | ATTCCCCTAACCAAACGCGC | 61.310 | 55.000 | 5.73 | 0.00 | 0.00 | 6.86 |
255 | 256 | 2.359478 | CCCCTAACCAAACGCGCT | 60.359 | 61.111 | 5.73 | 0.00 | 0.00 | 5.92 |
256 | 257 | 1.078988 | CCCCTAACCAAACGCGCTA | 60.079 | 57.895 | 5.73 | 0.00 | 0.00 | 4.26 |
272 | 273 | 1.635817 | GCTATGGGTCCCTTGAGGCA | 61.636 | 60.000 | 10.00 | 0.00 | 34.51 | 4.75 |
388 | 389 | 0.176680 | CAATCTCACCGCTGTAGGCT | 59.823 | 55.000 | 0.00 | 0.00 | 39.13 | 4.58 |
411 | 412 | 6.315144 | GCTTACCACCAAATTTTGACAGTTTT | 59.685 | 34.615 | 10.72 | 0.00 | 0.00 | 2.43 |
530 | 537 | 3.136123 | TTCGTCCGCTAGTCCCCG | 61.136 | 66.667 | 0.00 | 0.00 | 0.00 | 5.73 |
648 | 658 | 3.616721 | ACCCGTTCGCTGTCAGCT | 61.617 | 61.111 | 22.13 | 0.00 | 39.60 | 4.24 |
858 | 869 | 1.073763 | TCCCCATTTCACACCAGTCTG | 59.926 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1422 | 1454 | 3.760035 | GACTCCGAGGCCGCTGAA | 61.760 | 66.667 | 4.53 | 0.00 | 0.00 | 3.02 |
1423 | 1455 | 3.708220 | GACTCCGAGGCCGCTGAAG | 62.708 | 68.421 | 4.53 | 1.49 | 0.00 | 3.02 |
1494 | 1532 | 1.070957 | GGAGGCCGCCACTAATACC | 59.929 | 63.158 | 22.24 | 0.00 | 0.00 | 2.73 |
2349 | 2393 | 4.680237 | CTCAAGACGCGGTGGGCA | 62.680 | 66.667 | 12.47 | 0.00 | 43.84 | 5.36 |
2836 | 2890 | 4.202010 | TGTGAAGAGCAAAGCTGGTTTAAC | 60.202 | 41.667 | 4.32 | 0.84 | 39.88 | 2.01 |
2839 | 2893 | 2.294512 | AGAGCAAAGCTGGTTTAACTGC | 59.705 | 45.455 | 4.32 | 5.27 | 39.88 | 4.40 |
2884 | 2938 | 4.537135 | TCTGTACGCCATTCTCTCTTTT | 57.463 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
3023 | 3093 | 0.458669 | GACAATCTAAGGGACGCGGA | 59.541 | 55.000 | 12.47 | 0.00 | 0.00 | 5.54 |
3113 | 3193 | 9.941664 | CATTATCAGATGACATTAGTGGAAAAC | 57.058 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3120 | 3200 | 1.533731 | CATTAGTGGAAAACGTGGCGT | 59.466 | 47.619 | 0.00 | 0.00 | 43.97 | 5.68 |
3121 | 3201 | 1.219646 | TTAGTGGAAAACGTGGCGTC | 58.780 | 50.000 | 0.00 | 0.00 | 39.99 | 5.19 |
3138 | 3218 | 2.774007 | CGTCAACAAAATCGATGCTCC | 58.226 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
3145 | 3225 | 5.138125 | ACAAAATCGATGCTCCAAAATGT | 57.862 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
3237 | 3318 | 6.371809 | AAACAACACTTTCGCAATCTAAGA | 57.628 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3273 | 3354 | 0.029300 | CCTCAAATTGCCCGCATACG | 59.971 | 55.000 | 0.00 | 0.00 | 39.67 | 3.06 |
3288 | 3369 | 3.243336 | GCATACGATCCGGACATACTTC | 58.757 | 50.000 | 6.12 | 0.00 | 0.00 | 3.01 |
3294 | 3375 | 3.566523 | GATCCGGACATACTTCGTCATC | 58.433 | 50.000 | 6.12 | 0.00 | 34.97 | 2.92 |
3299 | 3380 | 2.858344 | GGACATACTTCGTCATCCAACG | 59.142 | 50.000 | 0.00 | 0.00 | 43.92 | 4.10 |
3374 | 3457 | 1.149627 | CACCCAAAACCACTCCCGA | 59.850 | 57.895 | 0.00 | 0.00 | 0.00 | 5.14 |
3388 | 3471 | 1.205655 | CTCCCGAAGCTCACATCTCAA | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
3390 | 3473 | 2.237143 | TCCCGAAGCTCACATCTCAATT | 59.763 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
3405 | 3488 | 3.142028 | TCTCAATTCCTTCCCCCTTGTTT | 59.858 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
3508 | 3591 | 3.063743 | GCCATGCCGGTTTGCCTAC | 62.064 | 63.158 | 1.90 | 0.00 | 36.97 | 3.18 |
3539 | 3622 | 4.193334 | CTCTCGTCCATCCGCGCA | 62.193 | 66.667 | 8.75 | 0.00 | 0.00 | 6.09 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.252351 | ACTTCCCATAGCTAATCCCTCC | 58.748 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1 | 2 | 4.348168 | TCAACTTCCCATAGCTAATCCCTC | 59.652 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2 | 3 | 4.307259 | TCAACTTCCCATAGCTAATCCCT | 58.693 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
3 | 4 | 4.706842 | TCAACTTCCCATAGCTAATCCC | 57.293 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
4 | 5 | 7.588497 | AAAATCAACTTCCCATAGCTAATCC | 57.412 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5 | 6 | 9.952188 | GTAAAAATCAACTTCCCATAGCTAATC | 57.048 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
6 | 7 | 9.700831 | AGTAAAAATCAACTTCCCATAGCTAAT | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
7 | 8 | 9.174166 | GAGTAAAAATCAACTTCCCATAGCTAA | 57.826 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
8 | 9 | 7.773690 | GGAGTAAAAATCAACTTCCCATAGCTA | 59.226 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
9 | 10 | 6.603599 | GGAGTAAAAATCAACTTCCCATAGCT | 59.396 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
10 | 11 | 6.183360 | GGGAGTAAAAATCAACTTCCCATAGC | 60.183 | 42.308 | 1.89 | 0.00 | 35.59 | 2.97 |
11 | 12 | 6.889722 | TGGGAGTAAAAATCAACTTCCCATAG | 59.110 | 38.462 | 5.28 | 0.00 | 40.25 | 2.23 |
12 | 13 | 6.795590 | TGGGAGTAAAAATCAACTTCCCATA | 58.204 | 36.000 | 5.28 | 0.00 | 40.25 | 2.74 |
13 | 14 | 5.650283 | TGGGAGTAAAAATCAACTTCCCAT | 58.350 | 37.500 | 5.28 | 0.00 | 40.25 | 4.00 |
14 | 15 | 5.068215 | TGGGAGTAAAAATCAACTTCCCA | 57.932 | 39.130 | 5.28 | 5.28 | 40.25 | 4.37 |
15 | 16 | 6.605471 | AATGGGAGTAAAAATCAACTTCCC | 57.395 | 37.500 | 0.00 | 0.00 | 40.25 | 3.97 |
16 | 17 | 7.039011 | AGGAAATGGGAGTAAAAATCAACTTCC | 60.039 | 37.037 | 0.00 | 0.00 | 41.22 | 3.46 |
17 | 18 | 7.896811 | AGGAAATGGGAGTAAAAATCAACTTC | 58.103 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
18 | 19 | 7.855784 | AGGAAATGGGAGTAAAAATCAACTT | 57.144 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
19 | 20 | 7.290014 | ACAAGGAAATGGGAGTAAAAATCAACT | 59.710 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
20 | 21 | 7.441836 | ACAAGGAAATGGGAGTAAAAATCAAC | 58.558 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
21 | 22 | 7.610580 | ACAAGGAAATGGGAGTAAAAATCAA | 57.389 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
22 | 23 | 7.610580 | AACAAGGAAATGGGAGTAAAAATCA | 57.389 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
23 | 24 | 7.387673 | CCAAACAAGGAAATGGGAGTAAAAATC | 59.612 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
24 | 25 | 7.223584 | CCAAACAAGGAAATGGGAGTAAAAAT | 58.776 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
25 | 26 | 6.587273 | CCAAACAAGGAAATGGGAGTAAAAA | 58.413 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
26 | 27 | 5.454045 | GCCAAACAAGGAAATGGGAGTAAAA | 60.454 | 40.000 | 0.00 | 0.00 | 33.45 | 1.52 |
27 | 28 | 4.039852 | GCCAAACAAGGAAATGGGAGTAAA | 59.960 | 41.667 | 0.00 | 0.00 | 33.45 | 2.01 |
28 | 29 | 3.576550 | GCCAAACAAGGAAATGGGAGTAA | 59.423 | 43.478 | 0.00 | 0.00 | 33.45 | 2.24 |
29 | 30 | 3.161866 | GCCAAACAAGGAAATGGGAGTA | 58.838 | 45.455 | 0.00 | 0.00 | 33.45 | 2.59 |
30 | 31 | 1.970640 | GCCAAACAAGGAAATGGGAGT | 59.029 | 47.619 | 0.00 | 0.00 | 33.45 | 3.85 |
31 | 32 | 1.969923 | TGCCAAACAAGGAAATGGGAG | 59.030 | 47.619 | 0.00 | 0.00 | 33.45 | 4.30 |
32 | 33 | 2.094100 | TGCCAAACAAGGAAATGGGA | 57.906 | 45.000 | 0.00 | 0.00 | 33.45 | 4.37 |
33 | 34 | 4.444536 | CATATGCCAAACAAGGAAATGGG | 58.555 | 43.478 | 0.00 | 0.00 | 33.45 | 4.00 |
34 | 35 | 4.080975 | ACCATATGCCAAACAAGGAAATGG | 60.081 | 41.667 | 0.00 | 0.00 | 38.58 | 3.16 |
35 | 36 | 4.871557 | CACCATATGCCAAACAAGGAAATG | 59.128 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
36 | 37 | 4.080975 | CCACCATATGCCAAACAAGGAAAT | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
37 | 38 | 3.260380 | CCACCATATGCCAAACAAGGAAA | 59.740 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
38 | 39 | 2.830923 | CCACCATATGCCAAACAAGGAA | 59.169 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
39 | 40 | 2.455557 | CCACCATATGCCAAACAAGGA | 58.544 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
40 | 41 | 1.481772 | CCCACCATATGCCAAACAAGG | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
41 | 42 | 2.455557 | TCCCACCATATGCCAAACAAG | 58.544 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
42 | 43 | 2.612285 | TCCCACCATATGCCAAACAA | 57.388 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
43 | 44 | 2.612285 | TTCCCACCATATGCCAAACA | 57.388 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
44 | 45 | 4.649218 | ACTAATTCCCACCATATGCCAAAC | 59.351 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
45 | 46 | 4.877773 | ACTAATTCCCACCATATGCCAAA | 58.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
46 | 47 | 4.534647 | ACTAATTCCCACCATATGCCAA | 57.465 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
47 | 48 | 4.504165 | CGTACTAATTCCCACCATATGCCA | 60.504 | 45.833 | 0.00 | 0.00 | 0.00 | 4.92 |
48 | 49 | 4.000988 | CGTACTAATTCCCACCATATGCC | 58.999 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
49 | 50 | 4.000988 | CCGTACTAATTCCCACCATATGC | 58.999 | 47.826 | 0.00 | 0.00 | 0.00 | 3.14 |
50 | 51 | 4.285003 | TCCCGTACTAATTCCCACCATATG | 59.715 | 45.833 | 0.00 | 0.00 | 0.00 | 1.78 |
51 | 52 | 4.495565 | TCCCGTACTAATTCCCACCATAT | 58.504 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
52 | 53 | 3.926198 | TCCCGTACTAATTCCCACCATA | 58.074 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
53 | 54 | 2.766736 | TCCCGTACTAATTCCCACCAT | 58.233 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
54 | 55 | 2.250921 | TCCCGTACTAATTCCCACCA | 57.749 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
55 | 56 | 4.961438 | TTATCCCGTACTAATTCCCACC | 57.039 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
56 | 57 | 6.351711 | AGTTTTATCCCGTACTAATTCCCAC | 58.648 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
57 | 58 | 6.384886 | AGAGTTTTATCCCGTACTAATTCCCA | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 4.37 |
58 | 59 | 6.704937 | CAGAGTTTTATCCCGTACTAATTCCC | 59.295 | 42.308 | 0.00 | 0.00 | 0.00 | 3.97 |
59 | 60 | 6.202379 | GCAGAGTTTTATCCCGTACTAATTCC | 59.798 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
60 | 61 | 6.985059 | AGCAGAGTTTTATCCCGTACTAATTC | 59.015 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
61 | 62 | 6.885922 | AGCAGAGTTTTATCCCGTACTAATT | 58.114 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
62 | 63 | 6.097839 | TGAGCAGAGTTTTATCCCGTACTAAT | 59.902 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
63 | 64 | 5.419788 | TGAGCAGAGTTTTATCCCGTACTAA | 59.580 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
64 | 65 | 4.951715 | TGAGCAGAGTTTTATCCCGTACTA | 59.048 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
65 | 66 | 3.767673 | TGAGCAGAGTTTTATCCCGTACT | 59.232 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
66 | 67 | 4.119442 | TGAGCAGAGTTTTATCCCGTAC | 57.881 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
67 | 68 | 4.404394 | TGATGAGCAGAGTTTTATCCCGTA | 59.596 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
68 | 69 | 3.197766 | TGATGAGCAGAGTTTTATCCCGT | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 5.28 |
69 | 70 | 3.797039 | TGATGAGCAGAGTTTTATCCCG | 58.203 | 45.455 | 0.00 | 0.00 | 0.00 | 5.14 |
70 | 71 | 6.705863 | AATTGATGAGCAGAGTTTTATCCC | 57.294 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
71 | 72 | 8.677300 | TGTTAATTGATGAGCAGAGTTTTATCC | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
74 | 75 | 8.514594 | CCTTGTTAATTGATGAGCAGAGTTTTA | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
75 | 76 | 7.014615 | ACCTTGTTAATTGATGAGCAGAGTTTT | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
76 | 77 | 6.491403 | ACCTTGTTAATTGATGAGCAGAGTTT | 59.509 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
77 | 78 | 6.006449 | ACCTTGTTAATTGATGAGCAGAGTT | 58.994 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
78 | 79 | 5.564550 | ACCTTGTTAATTGATGAGCAGAGT | 58.435 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
79 | 80 | 6.237942 | CGTACCTTGTTAATTGATGAGCAGAG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.35 |
80 | 81 | 5.580691 | CGTACCTTGTTAATTGATGAGCAGA | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
81 | 82 | 5.727791 | GCGTACCTTGTTAATTGATGAGCAG | 60.728 | 44.000 | 0.00 | 0.00 | 0.00 | 4.24 |
82 | 83 | 4.094294 | GCGTACCTTGTTAATTGATGAGCA | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
83 | 84 | 4.495844 | GGCGTACCTTGTTAATTGATGAGC | 60.496 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
84 | 85 | 4.634004 | TGGCGTACCTTGTTAATTGATGAG | 59.366 | 41.667 | 0.00 | 0.00 | 36.63 | 2.90 |
85 | 86 | 4.580868 | TGGCGTACCTTGTTAATTGATGA | 58.419 | 39.130 | 0.00 | 0.00 | 36.63 | 2.92 |
86 | 87 | 4.955925 | TGGCGTACCTTGTTAATTGATG | 57.044 | 40.909 | 0.00 | 0.00 | 36.63 | 3.07 |
87 | 88 | 4.338118 | CCATGGCGTACCTTGTTAATTGAT | 59.662 | 41.667 | 0.00 | 0.00 | 39.04 | 2.57 |
88 | 89 | 3.692101 | CCATGGCGTACCTTGTTAATTGA | 59.308 | 43.478 | 0.00 | 0.00 | 39.04 | 2.57 |
89 | 90 | 3.692101 | TCCATGGCGTACCTTGTTAATTG | 59.308 | 43.478 | 6.96 | 0.00 | 39.04 | 2.32 |
90 | 91 | 3.958018 | TCCATGGCGTACCTTGTTAATT | 58.042 | 40.909 | 6.96 | 0.00 | 39.04 | 1.40 |
91 | 92 | 3.637911 | TCCATGGCGTACCTTGTTAAT | 57.362 | 42.857 | 6.96 | 0.00 | 39.04 | 1.40 |
92 | 93 | 3.420300 | TTCCATGGCGTACCTTGTTAA | 57.580 | 42.857 | 6.96 | 0.00 | 39.04 | 2.01 |
93 | 94 | 3.420300 | TTTCCATGGCGTACCTTGTTA | 57.580 | 42.857 | 6.96 | 0.00 | 39.04 | 2.41 |
94 | 95 | 2.279935 | TTTCCATGGCGTACCTTGTT | 57.720 | 45.000 | 6.96 | 0.00 | 39.04 | 2.83 |
95 | 96 | 2.279935 | TTTTCCATGGCGTACCTTGT | 57.720 | 45.000 | 6.96 | 0.00 | 39.04 | 3.16 |
113 | 114 | 5.420725 | GAAGCCAATTCCCACCTATTTTT | 57.579 | 39.130 | 0.00 | 0.00 | 31.14 | 1.94 |
125 | 126 | 3.157087 | TGGAAGTTGAGGAAGCCAATTC | 58.843 | 45.455 | 0.00 | 0.00 | 37.17 | 2.17 |
126 | 127 | 3.243359 | TGGAAGTTGAGGAAGCCAATT | 57.757 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
127 | 128 | 2.978156 | TGGAAGTTGAGGAAGCCAAT | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
128 | 129 | 2.978156 | ATGGAAGTTGAGGAAGCCAA | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 4.52 |
129 | 130 | 2.555227 | GGAATGGAAGTTGAGGAAGCCA | 60.555 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
130 | 131 | 2.095461 | GGAATGGAAGTTGAGGAAGCC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
131 | 132 | 2.095461 | GGGAATGGAAGTTGAGGAAGC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
132 | 133 | 2.310052 | AGGGGAATGGAAGTTGAGGAAG | 59.690 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
133 | 134 | 2.358258 | AGGGGAATGGAAGTTGAGGAA | 58.642 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
134 | 135 | 2.059756 | AGGGGAATGGAAGTTGAGGA | 57.940 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
135 | 136 | 2.621668 | GGAAGGGGAATGGAAGTTGAGG | 60.622 | 54.545 | 0.00 | 0.00 | 0.00 | 3.86 |
136 | 137 | 2.728007 | GGAAGGGGAATGGAAGTTGAG | 58.272 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
137 | 138 | 1.004277 | CGGAAGGGGAATGGAAGTTGA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
138 | 139 | 1.004277 | TCGGAAGGGGAATGGAAGTTG | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
139 | 140 | 1.004394 | GTCGGAAGGGGAATGGAAGTT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.66 |
140 | 141 | 0.618981 | GTCGGAAGGGGAATGGAAGT | 59.381 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
141 | 142 | 0.912486 | AGTCGGAAGGGGAATGGAAG | 59.088 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
142 | 143 | 1.368374 | AAGTCGGAAGGGGAATGGAA | 58.632 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
143 | 144 | 2.257391 | TAAGTCGGAAGGGGAATGGA | 57.743 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
144 | 145 | 3.014623 | GTTTAAGTCGGAAGGGGAATGG | 58.985 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
145 | 146 | 3.951663 | AGTTTAAGTCGGAAGGGGAATG | 58.048 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
146 | 147 | 4.567116 | GGAAGTTTAAGTCGGAAGGGGAAT | 60.567 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
147 | 148 | 3.244665 | GGAAGTTTAAGTCGGAAGGGGAA | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 3.97 |
148 | 149 | 2.303890 | GGAAGTTTAAGTCGGAAGGGGA | 59.696 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
149 | 150 | 2.039348 | TGGAAGTTTAAGTCGGAAGGGG | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
150 | 151 | 3.412237 | TGGAAGTTTAAGTCGGAAGGG | 57.588 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
151 | 152 | 4.395231 | GGAATGGAAGTTTAAGTCGGAAGG | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
152 | 153 | 4.395231 | GGGAATGGAAGTTTAAGTCGGAAG | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
153 | 154 | 4.042435 | AGGGAATGGAAGTTTAAGTCGGAA | 59.958 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
154 | 155 | 3.585732 | AGGGAATGGAAGTTTAAGTCGGA | 59.414 | 43.478 | 0.00 | 0.00 | 0.00 | 4.55 |
155 | 156 | 3.939592 | GAGGGAATGGAAGTTTAAGTCGG | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
156 | 157 | 4.833390 | AGAGGGAATGGAAGTTTAAGTCG | 58.167 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
157 | 158 | 8.809468 | AATTAGAGGGAATGGAAGTTTAAGTC | 57.191 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
162 | 163 | 8.950007 | TGTTTAATTAGAGGGAATGGAAGTTT | 57.050 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
163 | 164 | 8.170730 | ACTGTTTAATTAGAGGGAATGGAAGTT | 58.829 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
164 | 165 | 7.611855 | CACTGTTTAATTAGAGGGAATGGAAGT | 59.388 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
165 | 166 | 7.829211 | TCACTGTTTAATTAGAGGGAATGGAAG | 59.171 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
166 | 167 | 7.695055 | TCACTGTTTAATTAGAGGGAATGGAA | 58.305 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
167 | 168 | 7.265599 | TCACTGTTTAATTAGAGGGAATGGA | 57.734 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
168 | 169 | 7.611855 | AGTTCACTGTTTAATTAGAGGGAATGG | 59.388 | 37.037 | 8.39 | 0.00 | 0.00 | 3.16 |
169 | 170 | 8.567285 | AGTTCACTGTTTAATTAGAGGGAATG | 57.433 | 34.615 | 8.39 | 0.00 | 0.00 | 2.67 |
170 | 171 | 9.588096 | AAAGTTCACTGTTTAATTAGAGGGAAT | 57.412 | 29.630 | 8.39 | 0.00 | 0.00 | 3.01 |
171 | 172 | 8.990163 | AAAGTTCACTGTTTAATTAGAGGGAA | 57.010 | 30.769 | 3.12 | 3.12 | 0.00 | 3.97 |
172 | 173 | 8.990163 | AAAAGTTCACTGTTTAATTAGAGGGA | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 4.20 |
181 | 182 | 9.621629 | TGAGGAGATTAAAAGTTCACTGTTTAA | 57.378 | 29.630 | 0.00 | 0.19 | 32.79 | 1.52 |
182 | 183 | 9.052759 | GTGAGGAGATTAAAAGTTCACTGTTTA | 57.947 | 33.333 | 0.00 | 0.00 | 32.79 | 2.01 |
183 | 184 | 7.013369 | GGTGAGGAGATTAAAAGTTCACTGTTT | 59.987 | 37.037 | 0.00 | 0.00 | 35.16 | 2.83 |
184 | 185 | 6.486993 | GGTGAGGAGATTAAAAGTTCACTGTT | 59.513 | 38.462 | 0.00 | 0.00 | 35.16 | 3.16 |
185 | 186 | 5.998363 | GGTGAGGAGATTAAAAGTTCACTGT | 59.002 | 40.000 | 0.00 | 0.00 | 35.16 | 3.55 |
186 | 187 | 5.412904 | GGGTGAGGAGATTAAAAGTTCACTG | 59.587 | 44.000 | 0.00 | 0.00 | 35.16 | 3.66 |
187 | 188 | 5.515008 | GGGGTGAGGAGATTAAAAGTTCACT | 60.515 | 44.000 | 0.00 | 0.00 | 35.16 | 3.41 |
188 | 189 | 4.700692 | GGGGTGAGGAGATTAAAAGTTCAC | 59.299 | 45.833 | 0.00 | 0.00 | 34.30 | 3.18 |
189 | 190 | 4.352595 | TGGGGTGAGGAGATTAAAAGTTCA | 59.647 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
190 | 191 | 4.918588 | TGGGGTGAGGAGATTAAAAGTTC | 58.081 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
191 | 192 | 5.536497 | ATGGGGTGAGGAGATTAAAAGTT | 57.464 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
192 | 193 | 6.217693 | AGTTATGGGGTGAGGAGATTAAAAGT | 59.782 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
193 | 194 | 6.663734 | AGTTATGGGGTGAGGAGATTAAAAG | 58.336 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
194 | 195 | 6.353602 | GGAGTTATGGGGTGAGGAGATTAAAA | 60.354 | 42.308 | 0.00 | 0.00 | 0.00 | 1.52 |
195 | 196 | 5.132144 | GGAGTTATGGGGTGAGGAGATTAAA | 59.868 | 44.000 | 0.00 | 0.00 | 0.00 | 1.52 |
196 | 197 | 4.658901 | GGAGTTATGGGGTGAGGAGATTAA | 59.341 | 45.833 | 0.00 | 0.00 | 0.00 | 1.40 |
197 | 198 | 4.232091 | GGAGTTATGGGGTGAGGAGATTA | 58.768 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
198 | 199 | 3.049344 | GGAGTTATGGGGTGAGGAGATT | 58.951 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
199 | 200 | 2.695585 | GGAGTTATGGGGTGAGGAGAT | 58.304 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
200 | 201 | 1.344087 | GGGAGTTATGGGGTGAGGAGA | 60.344 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
201 | 202 | 1.132500 | GGGAGTTATGGGGTGAGGAG | 58.868 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
202 | 203 | 0.419865 | TGGGAGTTATGGGGTGAGGA | 59.580 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
203 | 204 | 1.522900 | ATGGGAGTTATGGGGTGAGG | 58.477 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
204 | 205 | 2.158608 | GGAATGGGAGTTATGGGGTGAG | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
205 | 206 | 1.850345 | GGAATGGGAGTTATGGGGTGA | 59.150 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
206 | 207 | 1.133482 | GGGAATGGGAGTTATGGGGTG | 60.133 | 57.143 | 0.00 | 0.00 | 0.00 | 4.61 |
207 | 208 | 1.231963 | GGGAATGGGAGTTATGGGGT | 58.768 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
208 | 209 | 0.482887 | GGGGAATGGGAGTTATGGGG | 59.517 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
209 | 210 | 1.231018 | TGGGGAATGGGAGTTATGGG | 58.769 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
210 | 211 | 2.718609 | AGATGGGGAATGGGAGTTATGG | 59.281 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
211 | 212 | 4.459852 | AAGATGGGGAATGGGAGTTATG | 57.540 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
212 | 213 | 6.606241 | TTAAAGATGGGGAATGGGAGTTAT | 57.394 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
213 | 214 | 6.606241 | ATTAAAGATGGGGAATGGGAGTTA | 57.394 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
214 | 215 | 4.965283 | TTAAAGATGGGGAATGGGAGTT | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
215 | 216 | 5.458595 | GAATTAAAGATGGGGAATGGGAGT | 58.541 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
216 | 217 | 4.835056 | GGAATTAAAGATGGGGAATGGGAG | 59.165 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
217 | 218 | 4.388575 | GGGAATTAAAGATGGGGAATGGGA | 60.389 | 45.833 | 0.00 | 0.00 | 0.00 | 4.37 |
218 | 219 | 3.903714 | GGGAATTAAAGATGGGGAATGGG | 59.096 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
219 | 220 | 3.903714 | GGGGAATTAAAGATGGGGAATGG | 59.096 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
220 | 221 | 4.819610 | AGGGGAATTAAAGATGGGGAATG | 58.180 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
221 | 222 | 6.382087 | GTTAGGGGAATTAAAGATGGGGAAT | 58.618 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
222 | 223 | 5.341369 | GGTTAGGGGAATTAAAGATGGGGAA | 60.341 | 44.000 | 0.00 | 0.00 | 0.00 | 3.97 |
223 | 224 | 4.169264 | GGTTAGGGGAATTAAAGATGGGGA | 59.831 | 45.833 | 0.00 | 0.00 | 0.00 | 4.81 |
224 | 225 | 4.078863 | TGGTTAGGGGAATTAAAGATGGGG | 60.079 | 45.833 | 0.00 | 0.00 | 0.00 | 4.96 |
225 | 226 | 5.137412 | TGGTTAGGGGAATTAAAGATGGG | 57.863 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
226 | 227 | 6.405397 | CGTTTGGTTAGGGGAATTAAAGATGG | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
227 | 228 | 6.560711 | CGTTTGGTTAGGGGAATTAAAGATG | 58.439 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
228 | 229 | 5.126545 | GCGTTTGGTTAGGGGAATTAAAGAT | 59.873 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
229 | 230 | 4.460034 | GCGTTTGGTTAGGGGAATTAAAGA | 59.540 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
230 | 231 | 4.673320 | CGCGTTTGGTTAGGGGAATTAAAG | 60.673 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
231 | 232 | 3.190953 | CGCGTTTGGTTAGGGGAATTAAA | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
232 | 233 | 2.748532 | CGCGTTTGGTTAGGGGAATTAA | 59.251 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
233 | 234 | 2.358015 | CGCGTTTGGTTAGGGGAATTA | 58.642 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
234 | 235 | 1.170442 | CGCGTTTGGTTAGGGGAATT | 58.830 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
235 | 236 | 1.310216 | GCGCGTTTGGTTAGGGGAAT | 61.310 | 55.000 | 8.43 | 0.00 | 0.00 | 3.01 |
236 | 237 | 1.967494 | GCGCGTTTGGTTAGGGGAA | 60.967 | 57.895 | 8.43 | 0.00 | 0.00 | 3.97 |
237 | 238 | 1.543065 | TAGCGCGTTTGGTTAGGGGA | 61.543 | 55.000 | 8.43 | 0.00 | 0.00 | 4.81 |
238 | 239 | 0.463116 | ATAGCGCGTTTGGTTAGGGG | 60.463 | 55.000 | 8.43 | 0.00 | 0.00 | 4.79 |
239 | 240 | 0.655733 | CATAGCGCGTTTGGTTAGGG | 59.344 | 55.000 | 8.43 | 0.00 | 0.00 | 3.53 |
240 | 241 | 0.655733 | CCATAGCGCGTTTGGTTAGG | 59.344 | 55.000 | 8.43 | 0.00 | 0.00 | 2.69 |
241 | 242 | 0.655733 | CCCATAGCGCGTTTGGTTAG | 59.344 | 55.000 | 20.08 | 6.24 | 0.00 | 2.34 |
242 | 243 | 0.036199 | ACCCATAGCGCGTTTGGTTA | 60.036 | 50.000 | 20.08 | 0.00 | 0.00 | 2.85 |
243 | 244 | 1.302993 | ACCCATAGCGCGTTTGGTT | 60.303 | 52.632 | 20.08 | 7.79 | 0.00 | 3.67 |
244 | 245 | 1.743995 | GACCCATAGCGCGTTTGGT | 60.744 | 57.895 | 20.08 | 17.00 | 0.00 | 3.67 |
245 | 246 | 2.469516 | GGACCCATAGCGCGTTTGG | 61.470 | 63.158 | 8.43 | 16.42 | 0.00 | 3.28 |
246 | 247 | 2.469516 | GGGACCCATAGCGCGTTTG | 61.470 | 63.158 | 8.43 | 2.82 | 0.00 | 2.93 |
247 | 248 | 2.124860 | GGGACCCATAGCGCGTTT | 60.125 | 61.111 | 8.43 | 0.00 | 0.00 | 3.60 |
248 | 249 | 2.666098 | AAGGGACCCATAGCGCGTT | 61.666 | 57.895 | 14.60 | 3.54 | 0.00 | 4.84 |
249 | 250 | 3.081409 | AAGGGACCCATAGCGCGT | 61.081 | 61.111 | 14.60 | 0.00 | 0.00 | 6.01 |
250 | 251 | 2.588877 | CAAGGGACCCATAGCGCG | 60.589 | 66.667 | 14.60 | 0.00 | 0.00 | 6.86 |
251 | 252 | 1.227674 | CTCAAGGGACCCATAGCGC | 60.228 | 63.158 | 14.60 | 0.00 | 0.00 | 5.92 |
252 | 253 | 1.447643 | CCTCAAGGGACCCATAGCG | 59.552 | 63.158 | 14.60 | 0.00 | 37.23 | 4.26 |
253 | 254 | 1.149401 | GCCTCAAGGGACCCATAGC | 59.851 | 63.158 | 14.60 | 4.23 | 37.23 | 2.97 |
254 | 255 | 1.143813 | ATGCCTCAAGGGACCCATAG | 58.856 | 55.000 | 14.60 | 6.55 | 38.75 | 2.23 |
255 | 256 | 0.846015 | CATGCCTCAAGGGACCCATA | 59.154 | 55.000 | 14.60 | 0.00 | 38.75 | 2.74 |
256 | 257 | 1.616921 | CATGCCTCAAGGGACCCAT | 59.383 | 57.895 | 14.60 | 0.00 | 38.75 | 4.00 |
272 | 273 | 0.110823 | GTCGCTGACGTTTTTCGCAT | 60.111 | 50.000 | 0.00 | 0.00 | 44.19 | 4.73 |
367 | 368 | 1.202580 | GCCTACAGCGGTGAGATTGAT | 60.203 | 52.381 | 23.44 | 0.00 | 0.00 | 2.57 |
413 | 414 | 8.876275 | ACGTACAAACTGTCAAAATTACTCTA | 57.124 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
414 | 415 | 7.781548 | ACGTACAAACTGTCAAAATTACTCT | 57.218 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
420 | 421 | 8.715088 | GGAGTAATACGTACAAACTGTCAAAAT | 58.285 | 33.333 | 10.14 | 0.00 | 34.88 | 1.82 |
421 | 422 | 7.710044 | TGGAGTAATACGTACAAACTGTCAAAA | 59.290 | 33.333 | 10.14 | 0.00 | 34.88 | 2.44 |
422 | 423 | 7.208777 | TGGAGTAATACGTACAAACTGTCAAA | 58.791 | 34.615 | 10.14 | 0.00 | 34.88 | 2.69 |
423 | 424 | 6.747125 | TGGAGTAATACGTACAAACTGTCAA | 58.253 | 36.000 | 10.14 | 0.00 | 34.88 | 3.18 |
424 | 425 | 6.016024 | ACTGGAGTAATACGTACAAACTGTCA | 60.016 | 38.462 | 10.14 | 7.95 | 34.88 | 3.58 |
692 | 702 | 2.964310 | GCAGGAGCAGCCAGGAAGA | 61.964 | 63.158 | 0.00 | 0.00 | 41.58 | 2.87 |
858 | 869 | 2.017559 | ATTCGTAGGTGGAGGCGAGC | 62.018 | 60.000 | 0.00 | 0.00 | 34.78 | 5.03 |
1187 | 1219 | 1.972660 | GCTACCGTCCTTGATGGGCT | 61.973 | 60.000 | 7.24 | 0.00 | 42.60 | 5.19 |
2349 | 2393 | 2.437359 | GTGCGCTTCTGGAGGCAT | 60.437 | 61.111 | 9.73 | 0.00 | 35.17 | 4.40 |
2836 | 2890 | 3.332919 | ACACACTAGAAATGCTCTGCAG | 58.667 | 45.455 | 7.63 | 7.63 | 43.65 | 4.41 |
2839 | 2893 | 3.499537 | TGCAACACACTAGAAATGCTCTG | 59.500 | 43.478 | 0.00 | 0.00 | 35.41 | 3.35 |
2884 | 2938 | 9.764363 | AGATGAATTTATAAGAGCATGTCGTTA | 57.236 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
3092 | 3172 | 5.408299 | CACGTTTTCCACTAATGTCATCTGA | 59.592 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3113 | 3193 | 0.233590 | TCGATTTTGTTGACGCCACG | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3120 | 3200 | 4.844998 | TTTGGAGCATCGATTTTGTTGA | 57.155 | 36.364 | 0.00 | 0.00 | 34.37 | 3.18 |
3121 | 3201 | 5.406175 | ACATTTTGGAGCATCGATTTTGTTG | 59.594 | 36.000 | 0.00 | 0.00 | 34.37 | 3.33 |
3178 | 3259 | 6.739112 | TCATGTGAAGTCGGATGAATAGTAG | 58.261 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3190 | 3271 | 2.084610 | TCCAAGCTCATGTGAAGTCG | 57.915 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3194 | 3275 | 5.068855 | TGTTTTGATTCCAAGCTCATGTGAA | 59.931 | 36.000 | 0.00 | 0.00 | 33.23 | 3.18 |
3195 | 3276 | 4.583907 | TGTTTTGATTCCAAGCTCATGTGA | 59.416 | 37.500 | 0.00 | 0.00 | 33.23 | 3.58 |
3237 | 3318 | 1.078143 | GGCTCGGCTTTGGAGATGT | 60.078 | 57.895 | 0.00 | 0.00 | 33.27 | 3.06 |
3294 | 3375 | 2.482721 | GACAAATACCTGTCCACGTTGG | 59.517 | 50.000 | 0.00 | 0.00 | 39.93 | 3.77 |
3374 | 3457 | 4.268359 | GGAAGGAATTGAGATGTGAGCTT | 58.732 | 43.478 | 0.00 | 0.00 | 0.00 | 3.74 |
3388 | 3471 | 2.454772 | AGGAAAACAAGGGGGAAGGAAT | 59.545 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3390 | 3473 | 1.541275 | AGGAAAACAAGGGGGAAGGA | 58.459 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3508 | 3591 | 3.966026 | GAGAGGTGGAACGACGGCG | 62.966 | 68.421 | 10.39 | 10.39 | 44.79 | 6.46 |
3539 | 3622 | 2.172717 | GTGCTGGGTGAATGGTACCTAT | 59.827 | 50.000 | 14.36 | 1.01 | 38.30 | 2.57 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.