>input_sequence_47505
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-----------------------------------------------------------------ATGAGATCCCCATCC
GGCGCCCGTCCCAGCAGCGGAGGGGGCGCAGCAGCAGACGACGACTTCGCCTTCTACTACTCTTTCTTCCAGGACGCCGC
CGCCGCGTCGCCGCTCCCACTCGCGCTCGACGGA------GCCGCCATGCCTAACAACCGCCGGAGGAAGCGCGGAGGGG
ACGACGACTCCGCCGCGGAGCCCATCAAGGACGGTAGCAACAACGGAAGGAAGCGCTCCATCGCCACCATAATAACTTCG
CTCGCCGCGCTCGAGGCCGAGGACCACGCCGACAGCGCGGGGGCCGCCGACGCCTCCCGCCGTGAGCTCGCGCTCCTCGA
GTCCAACGCCGACAACAAGTCGCAGGCCATGATGGACTACTTCGCCAAGATGGAGGGCAGCTTTGATGCCGACGCCGACT
CCGAGGCCGCTGAAGCGCGCAGCGGC------CTCTCGGCGTCGGCAGCGGCAGTGGCCGTCGTGGCTGCCGAGGAGGCC
GCCACTAATACCGCCGCGTCGGCCTCGCCGCCGCGTGCAGGCCACCACCAACGTCGCCTGTGGGTCAAGGACCGGTCGCA
GGCGTGGTGGGACCAGTGCAATAGCCCCGACTTCCCGGAGGCAGAGTTTCGGCGCGCCTTCAGGATGGGCCGGGAGACGT
TCGACATGATCTGCGAGGCGCTCGGCTCCGCGGTGGCCAAGGAGGACACCATGCTTCGCGCGGCCATCCCCGTGCGCCAG
CGCGTCGCCGTCTGCATCTGGCGCCTCGCCACCGGTGAGCCGCTCCGCCTCGTCTCCAAGCGCTTCGGCCTCGGCATCTC
CACATGCCACAAGCTCGTCCTCGAGGTCTGCGGTGCCATCAAGTCCGTCCTCATGCCGCGCTTCCTCCAGTGGCCCGACG
AG------GCCGCCGCCGGCAGATTCAAGGAGGGCTTCGAGAGATCCTTCGGTGTTCCGGGGGTCATCGGAGCCATGTAC
ACCACGCACATCCCTATCATCGCGCCCAAGATCTCCGTCGCCGCCTACTTCAACCGTCGGCACACGGAGCGCAATCAGAA
GACATCCTACTCCATCACGCTCCAGGGGGTGGTCGGCCCTGACCGCGCCTTCACCGACGTCTGCATCGGTTGGCCGGGCT
CCATGCCGGACGATCAGGTGCTCGAGAAATCCATGCTGCACCAGCGCGCCGCGGCGGGTATGATGCACGACGCCTGCCTC
GTCGGCGGCGCAAGCTACCCGCTCATGGACTGGGTGCTCGTGCCGTACACGCACCAGAACCTGACATGGACGCAGCACGC
CTTCAACGAGAAGGTCGGCGACATCCGCAACGTGGCCGTGGAGGCGTTCGCCCGGCTCAAGACGCGGTGGGCATGCCTCC
AGAAGCGCACGGAGGTGAAGCTCCAGGACCTCCCCGTGGTGCTGGGCGCCTGCTGCGTCCTGCACAACATCTGCGAGATG
CGCCGCGAGGAGCTCGAGCCGGAGGTCCCGTTTGCGCTTTTCGACGACGATACCACGCCGGAGACCCCTGTTCGCTCCGA
GACCGCCAAGCAGGAGAGGGACAGCATCGCGCACAACCTCCTCCACCGCGGTTTCGCCGGCACCACATTTTTCTGA----
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G239400
GGAGGGATTAGCTATGGGAAGTTGATTTTTACTCCCATTTCCTTGTTTGGCATATGGTGGGAATTAGTACGGGATAAAAC
TCTGCTCATCAATTAACAAGGTACGCCATGGAAAAAAATAGGTGGGAATTGGCTTCCTCAACTTCCATTCCCCTTCCGAC
TTAAACTTCCATTCCCTCTAATTAAACAGTGAACTTTTAATCTCCTCACCCCATAACTCCCATTCCCCATCTTTAATTCC
CCTAACCAAACGCGCTATGGGTCCCTTGAGGCATGCGAAAAACGTCAGCGACGCGGCGGTACGCAAGCATGTCGACGAAA
GGACGCCATGCCGCCGCGGTTTCTCGAACCCCGTGGCCGGCCCAGCTATCAATCTCACCGCTGTAGGCTTACCACCAAAT
TTTGACAGTTTTTTAGAGTAATTTTGACAGTTTGTACGTATTACTCCAGTTTACCGGCTCGCACGTGAGGGTGACG----
--GTGCCACGGCAGCCTGATTGTCATCCCATTGACCACGTTCGTCCGCTAGTCCCCGTTCCCCACCGCGCCGCGCCGTGC
CGAGAAGAGGC---GAGGAGTCCAGTCCACGCGGTGTCGTGCGGATCTGCGAAACCGCGTGAACCGCGGCACGCACCCGC
ACCCGTTCGCTGTCAGCTGGTGGGTGCCCACCCGCCACACCGCGTCCTCGGGGCGCGGCCATCTTCCTGGCTGCTCCTGC
TCCACACCAGCGCAGGCGCGGGCCGGTCTCGCTTTCCTGCTGCCTC-CCTTCCTTGTCCAAAAAGCAACCCCCGCGTTCA
CACCTCGCCATCGATCGGCCTCGTCGCATCACGCCGTATTTATATCGTTCCCCATTTCACACCAGTCTGCTCGCCTCCAC
CTACGAATCACAGGACGCTCATTTCTCTCGTTTCGTTTCCTCTTCAAT-----CGCTGACCCGCACCCACCACCGCACCG
CACCAA----------TCGCCGACCCGCGCGCACCCGGCCAGCGTTACTAGCTAGCGTGACGTATATGAGATCCCCATCC
GGCGCCCGTCCCAGCAGCGGAGGGGGCGCAGCAGCAGACGACGACTTCGCCTTCTACTACTCTTTCTTCCAGGACGCCGC
CGCCGCGTCGCCGCTCCCACTCGCGCTCGACGGA------GCCGCCATGCCTAACAACCGCCGGAGGAAGCGCGGAGGGG
ACGACGACTCCGCCGCGGAGCCCATCAAGGACGGTAGCAACAACGGAAGGAAGCGCTCCATCGCCACCATAATAACTTCG
CTCGCCGCGCTCGAGGCCGAGGACCACGCCGACAGCGCGGGGGCCGCCGACGCCTCCCGCCGTGAGCTCGCGCTCCTCGA
GTCCAACGCCGACAACAAGTCGCAGGCCATGATGGACTACTTCGCCAAGATGGAGGGCAGCTTTGATGCCGACGCCGACT
CCGAGGCCGCTGAAGCGCGCAGCGGC------CTCTCGGCGTCGGCAGCGGCAGTGGCCGTCGTGGCTGCCGAGGAGGCC
GCCACTAATACCGCCGCGTCGGCCTCGCCGCCGCGTGCAGGCCACCACCAACGTCGCCTGTGGGTCAAGGACCGGTCGCA
GGCGTGGTGGGACCAGTGCAATAGCCCCGACTTCCCGGAGGCAGAGTTTCGGCGCGCCTTCAGGATGGGCCGGGAGACGT
TCGACATGATCTGCGAGGCGCTCGGCTCCGCGGTGGCCAAGGAGGACACCATGCTTCGCGCGGCCATCCCCGTGCGCCAG
CGCGTCGCCGTCTGCATCTGGCGCCTCGCCACCGGTGAGCCGCTCCGCCTCGTCTCCAAGCGCTTCGGCCTCGGCATCTC
CACATGCCACAAGCTCGTCCTCGAGGTCTGCGGTGCCATCAAGTCCGTCCTCATGCCGCGCTTCCTCCAGTGGCCCGACG
AG------GCCGCCGCCGGCAGATTCAAGGAGGGCTTCGAGAGATCCTTCGGTGTTCCGGGGGTCATCGGAGCCATGTAC
ACCACGCACATCCCTATCATCGCGCCCAAGATCTCCGTCGCCGCCTACTTCAACCGTCGGCACACGGAGCGCAATCAGAA
GACATCCTACTCCATCACGCTCCAGGGGGTGGTCGGCCCTGACCGCGCCTTCACCGACGTCTGCATCGGTTGGCCGGGCT
CCATGCCGGACGATCAGGTGCTCGAGAAATCCATGCTGCACCAGCGCGCCGCGGCGGGTATGATGCACGACGCCTGCCTC
GTCGGCGGCGCAAGCTACCCGCTCATGGACTGGGTGCTCGTGCCGTACACGCACCAGAACCTGACATGGACGCAGCACGC
CTTCAACGAGAAGGTCGGCGACATCCGCAACGTGGCCGTGGAGGCGTTCGCCCGGCTCAAGACGCGGTGGGCATGCCTCC
AGAAGCGCACGGAGGTGAAGCTCCAGGACCTCCCCGTGGTGCTGGGCGCCTGCTGCGTCCTGCACAACATCTGCGAGATG
CGCCGCGAGGAGCTCGAGCCGGAGGTCCCGTTTGCGCTTTTCGACGACGATACCACGCCGGAGACCCCTGTTCGCTCCGA
GACCGCCAAGCAGGAGAGGGACAGCATCGCGCACAACCTCCTCCACCGCGGTTTCGCCGGCACCACATTTTTCTGATCAA
ATCACCTCCTGGCCCTCTCCTTGGCTTGGGTACAGAT--AAATTAAACATGCACCGAATTCTTTTAGCCGCTAGGATAGA
ACATTTTGTTAGGATTTGTACACAACGTTCAGAGAAACTGGAAATTCATGTAAACATTCTGTGGAAAATTTCGGCAGTAG
CTGCTGTCGGTTACTCGGTTTATTGTTTAAAGAT--------ATATATACAATTTAATTTACAAAATGTGAAGAGCAAAG
CTGGTTTAACTGCAGAGCATTTCTAGTGTGTTGCATTCTGTACGCCATTCTCTCTTTTAACGACATGCTCTTATAAATTC
ATCTGACCGTGCTGGATCGGCTGGTCCGCTCGTTGTAGCTGCGCCCGTTGGAA----------------CTGTCACGCGC
GAACAAATTCAGGATATATTGTCCCTGTTTTAGGACAATCTAAGGGACGCGGATGTTCTGATTCCGAAAAAATTCTGACC
TTTTTGTGTGCCAAATATT----------TTGATTGGTCACAATTTCATTATCAGATGACATTAGTGGAAAACGTGGCGT
CAACAAAATCGATGCTCCAAAATGTTATCTTTAGGTTTGTTTTG-AATTTTTTTTATTCTACTATTCATCCGACTTCACA
TGAGCTTGGAATCAAAACAACACTTTCGCAATCTAAGACATCTCCAAAGCCGAGCCTCAAATTGCCCGCATACGATCCGG
ACATACTTCGTCATCCAACGTGGACAGGTATTTGTCCACGTCTG--TTTTTTTCTAAACCGGAAAGGCGCCCTCGGCCCA
CCCAAAACCACTCCCGAAGCTCACATCTCAATTCCTTCCCCCTTGTTTTCCTTTGCTCCGCATCCGCTTTCTCCCAGGCC
GATGTCGCCCCCGTACCACCTCAGCAGCCAGCCAAGTCCTTGTTGGACCTTCGCCATGCCGGTTTGCCTACGCCGTCGTT
CCACCTCTCGTCCATCCGCGCATAGGTACCATTCACCCAGCACATGCCTTCCGTGGGGTCACTACGCCTGGCAAG
>chr3D_258
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TGGGTCCCTTGAGGCTTGCGAAAAACGTCAGCGACGCGGCGGTACGCAAGCATGTCGACGAAA
GGACGCCATGCCGCCGCGGTTTCTCGAACCCCGTGTCCGGCCCAGCTCTCGATCTCACCGCTGTAGGCCTACCACCAATT
TT-----------------------GACAGTTTGTACGTATTACTCCAGTTTACTGGCTCGCACGTGAG------G----
--GTGCCACGGCAGCCTGATTGTCATCCCATTGACCACGTTCTTCCGCTAGTCCCCATTCCCCACCGCGCCGCGCTGTGC
CGAGAAGAGGCGAGGAGGAGTCCAGTCCACGCGGTGTCGTGCGGATCTGCGAAACCGCGTGAACCGCGGCACGCACCCCC
ACCCGTTCGCTGTCAGCCGGTGGGTGCCCACCCGCCACACCGCGTCCTCGGGGCGCGGCCACCTTCCTGGCTGCTCCTGC
TCC------GCGCAGGCGCGGGCCGGTCTCGCTTTCCTGCCTCCT---CTTCCTTGTCCAAAAAGCAACCCCCGCGTTCA
CACCTCGCCATCGATCGGCCTCGTCGCATCACGCCGTATTTATATCGTTCCCCATTTCACACCAGTCTCCTCGCCTCCAC
CTACGAATCACAGGACGCTCATTTCTCTCGTTTCGTTTCCTCTTCAATCGCTTCGCTGACCCGCACCCACCACCGCACCG
CACCAC----------TCG-CGACCCGCGCGCACCCGGCCAGCGTTACTAGCTAGCGTGACGTATATGAGATCCCCATCC
GGCGCCCGTCCCAGCAGCGGAGGGGGCGCAGCAGCAGACGACGACTTCGCCTTCTACTACTCTTTCTTCCAGGACGCCGC
CGCCGCGTCGCCGCTCCCGCTCGCGCTCGACGGA------GCCGCCATGCCTAACAACCGCCGGAGGAAGCGCGGAGTGG
ACGACGACTCCGCCGCGGCGCCCATCAAGGACGGTAGCAACAACGGAAGGAAGCGCTCCATCGCCACCATAATAACTTCG
CTCGCCGCGCTCGAGGCCGAGGGCCACGCCGACAGCGCGGGGGCCGCCGACGCCTCCCGCCGCGAGCTCGCGCTCCTCGA
GTCCAACGCCGATAACAAGTCGCAGGCCATGATGGACTACTTCGCCAAGATGGAGGGCAGCTTCGATGCAGACGCCGACT
CCGAGGCCGCTGCGCGCTCCAAGCGCTCGCGGCTCTCGGCGTCGGCAGCGGCAGTGGCCGTCGTGGCTGGCGAGGAGGCC
GCCACCAATACTGCCGCGTCGGCCTCGCCGCCGCGTGCAGGCCACCACCAACGTCGGCTGTGGGTCAAGGACCGGTCGCA
GGCGTGGTGGGACCAGTGCAATAGCCCCGACTTCCCAGAGGCAGAGTTTCGGCGCGCCTTCAGGATGGGCCGGGAGACGT
TCGACATGATCTGCGAGGCGCTCGGCTCCGCGGTGGCCAAGGAGGACACCATGCTTCGCGCGGCCATCCCCGTGCGCCAG
CGCGTCGCCGTCTGCATCTGGCGCCTCGCCACCGGTGAACCGCTCCGCCTCGTCTCCAAGCGCTTCGGCCTCGGCATCTC
CACATGCCACAAGCTCGTCCTCGAGGTCTGCGGTGCCATCAAGTCCGTCCTCATGCCGCGTTTCCTCCAGTGGCCCGACG
AG------GCCGCCGCCGGCAGATTCAAGGAGGGCTTCGAGAGATCCTTCGGTGTTCCGGGGGTCATCGGAGCCATGTAC
ACCACGCACATCCCTATCATCGCGCCCAAGATCTCCGTCGCCGCCTACTTCAACCGTCGGCACACGGAGCGCAATCAGAA
GACATCCTACTCCATCACGCTCCAGGGGGTGGTCGGCCCTGACCGCGCCTTCACCGACGTCTGCATCGGCTGGCCGGGCT
CCATGCCGGACGATCAGGTGCTCGAGAAATCCATGCTGCACCAGCGCGCCGCGGCGGGTATGATGCACGACGCTTGCCTC
GTCGGCGGCGCAAGCTACCCGCTCATGGACTGGGTGCTCGTGCCGTACACGCACCAGAACCTGACATGGACGCAGCACGC
CTTCAACGAGAAGGTCGGCGACATCCGCAACGTGGCCGTGGAGGCGTTCGCGCGGCTCAAGACGCGGTGGGCGTGCCTCC
AGAAGCGCACGGAGGTGAAGCTCCAGGACCTCCCCGTGGTGCTGGGCGCCTGCTGCGTCCTGCACAACATCTGCGAGATG
CGCCGCGAGGAGCTCGAGCCGGAGGTCCCGTTTGCGCTTGTCGACGACGATACCACGCCGGAGACCCCTGTTCGCTCCGA
GACCGCCAAGCAGGAGAGGGACAGCATCGCGCACAACCTCCTCCACCGCGGTTTCGCCGGCACCACATTTTTCTGATCAA
ATCACCTCCTGGCCCTCTCCTTGTCTTGGGTACAGAT--AAATTAAACATGCACCGAATTCTTTTAGCCGCTAGGATAGA
ACATTTTGTTAGGATTTGTACACAACGTTCAGAGAAACTGGAAATTCATGTAAACATTCTGTGGAAAATTTCGTCAGTAG
CTGCTGTCGGTTACTCGGTTTATTGTTTAAAGATATATATATATATATACAATTTAATTTACAAAATGTGAAGAGCAAAG
CTGGTTTAAATGAAGAGCATTT---GTGTGTTGCATTCTGTACGCCATTCTCTCTTT-AACGACATGCTCTTATAAATTC
ATCTGACCGTGCTGGATCGGCTGGTCCGCTCGTTGTAGCTGCGCCCGTTGGAA----------------CTGTCACGCGC
GAACAAATTCAGGATATATTGTCCCTGTTTTAGGACAATCTAAGGTATGCGGCTGTTCTGGTTCTGAAAAAATTCTGACC
TTTTTGTGTGCCAAATATTGACAAATATTTTGATTGGTCACAATT-CATTACCAGATGACATTAGTGGAAAATGTGGCGA
AAACAAAATCGATGCTCTAAAATGCTATCTTTAGGTTTGTTTTGAAATTATTTTTATTTTACTATTCATCTGACCACACA
TGAGCTTGGAATCAAAACAACACTTTCGCAATCTAAGGCATCTCCAAAGCCGAGCCTCAAATTGCCCGCATACAATCCGG
ACATACTTTGTCATTCAACATGGACAGGTATATGTCCATGTCTGTTTTTTTTTCTAAACCGGAAAGGCGCCCTCGGCCCA
CCCAAAACCACTCCCGGAGCTCACATCTCAGTCCCTTCCCCCTTGTTCTCCTTTGCTCCGCATCCGCTTTCTCCCAGGCC
GATGTCGCCCCCGTACCACCTCAGCAGCCAGCCAAGTCCTTGTTGGACCTCCGCCATGCCGGTTTGCCTA-GCCGTCGTT
CCACCTCTCGTCCATCCGCGCGTAGGTACCATTCACCCAGCACATGCCTTCCGTGGGGTCACTACGCCTGGCAAG
>chr3A_262
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TCCCTTGAGGCTTGCGAAAAACGTCAGCGACGCGGCGGTACGCAAGCATGTCGACGAAA
GGACGCCATGCCGCCGCGGTTTCTCGAACCCCGTGGCCGGCCCAGCTCTCGATCTCACCGCTCTAGGCCTACCACCAAAT
TTTGACAGTTTGTACACGTAT-----------------TATTACTCCAGTTTACCGGCTCGCACGTGAG------GGTGA
CGGTGCCACGGCAGCCTGATTGTCATCCCATTGACCACGTTCGTCCGCTAGTCCCCATTCCCCAACGCGCCGCGCTGTGC
CGAGAAGAGGGGAGGAGGAGTCCAGTCCACGCGGTGTCGTGCGGATCTGCGAAACCGCGTGAACCGCGGCACGCACCCGC
ACCCGTTCGCTGTCAGCCGGTGGGTGCCCACCCGCCACACCGCGTCCTCGGGGCGCGGCCACCTTCCTGGCTGCTCCTGC
TCCACACCAGCGCAGGCGCGGGCCGGTCTCGCTTTCCTGCTGCCTCACCTTCCTTGTCCAAAAAGCAAACCCCGCGTTCA
CACCTCGCCATCGATCGGCCTCGTCGCATCACGCCGTATTTATATCCTTCCCCATTTCACACCAGTCTCCTCGCCTCCAC
CTACGAATCACAGGACGCTCATTTCTCCCGTTTCGTTTCATCTTCAA-----TCGCCGACCCGCACCCACCACCGCACCG
CACCGCGCCGCACCAATCG-CGACCCGCGCGCACCCGGCCAGCGTTACTAGCTAGCGTGACGTATATGAGATCCCCATCC
GCCGCCCGTCCCAGCAGCGGAGGGGGCGCAGCAG---ACGACGACTTCGCCTTCTACTACTCTTTCTTCCAGGACGCCGC
CGCCGCATCGCCGCTCCCGCTCGCGCTCGACGGAGCCGTCGCCGCCATGCCTAACAACCGCCGGAGGAAGCGCGGAGGGG
ACGACGACTCCGCCGTGGCGCCCATCAAGGACGGTAGCAACAACGGAAGGAAGCGCTCCATCGCCACCATAATAACTTCG
CTCGCCGCGCTCGAGGCCGAGGGCCACGCCGACAGCGCGGGGGCCGCCGACGCCTCCCGCCGCGAGCTCGCGCTACTCGA
GTCCAACGCCGACAACAAGTCGCAGGCCATGATGGACTACTTCGCCAAGATGGAGGGCAGCTTTGATGCCGACGCCGACT
CCGAGGCCGCTGCGCGCTCCAAGCGCTCGCGGCTCTCGGCGTCGGCAGCGGCAGTGGCCGTCGTGGCTGGCGAGGAGGCC
GCCACCAATACTGCCGCGTCGGCCTCGCCGCCGCGTGCAGGCCACCACCAACGTCGGCTGTGGGTCAAGGACCGGTCGCA
GGCGTGGTGGGACCAGTGCAACAGCCCCGACTTCCCGGAGGCAGAGTTTCGGCGCGCCTTCAGGATGGGCCGGGAGACGT
TTGACATGATCTGCGAGGCGCTCGGCTCCGCGGTGGCCAAGGAGGACACCATGCTTCGCGCGGCCATCCCCGTGCGCCAG
CGCGTCGCCGTCTGCATCTGGCGCCTCGCCACCGGTGAGCCGCTCCGCCTCGTCTCCAAGCGCTTCGGCCTCGGCATCTC
CACATGCCACAAGCTCGTTCTCGAGGTCTGCGGTGCCATCAAGTCCGTCCTCATGCCGCGTTTCCTCCAGTGGCCCGACG
AG------GCCGCCGCCGGCAGATTCAAGGAGGGCTTCGAGAGATCCTTCGGTGTTCCGGGGGTCATCGGAGCCATGTAC
ACCACGCACATCCCTATCATCGCGCCCAAGATCTCCGTCGCCGCCTACTTCAACCGTCGGCACACGGAGCGCAATCAGAA
GACATCCTACTCCATCACGCTCCAGGGGGTGGTCGGCCCTGACCGCGCCTTCACCGACGTCTGCATCGGCTGGCCGGGTT
CCATGCCGGACGATCAGGTGCTCGAGAAATCCATGCTGCACCAGCGCGCCGCGGCGGGTATGATGCACGACGCTTGCCTC
GTCGGCGGCGCAAGCTACCCGCTCATGGACTGGGTGCTCGTGCCGTACACGCACCAGAACCTGACATGGACGCAGCACGC
CTTCAACGAGAAGGTCGGCGACATCCGCAACGTGGCCGTGGAGGCGTTCGCGCGGCTCAAGACGCGGTGGGCGTGCCTCC
AGAAGCGCACGGAGGTGAAGCTCCAGGACCTCCCCGTGGTGCTGGGCGCCTGCTGCGTCCTGCACAACATCTGCGAGATG
CGCCGCGAGGAGCTCGAGCCGGAGGTCCCGTTTGCGCTCTTCGACGACGACACCACGCCGGAGACCCCTGTTCGCTCTGA
GACCGCCAAGCAGGAGAGGGACAGCATCGCGCACAACCTCCTCCACCGCGGTTTCGCCGGCACCACATTTTTCTGATCAA
ATCACCTCCTG-CCCTCTCCTTGGCTTGGTACAGATAAAAAATTAAACATGTAGCGAATTCTTTTAGCCGCTAGGATAGA
ACATTTTGTTAGGATTTGTACACCACGTTCAGAGAAACTGGAAATTCATGTAAACATTCTGTGGAAAATTTCGGCAGTAC
CTGCTGTCGGTTACTCGGTTTATTGTTTAAAGAT--------ATATATACAATTTAATTTAC-AAATGCGAAGAGCAACG
CTGGTTTAAATGAAGAGCATTTCTAGTGTGTTGCATTGTGTACGCCATTCTCTCTTC-AACGACATGCTCTCAGCTGACC
A--------TGCTGGATCGGCTAGTCCGCTCGTTGTCGCTGCGCCCGTTGGAGTGCAGGCGCACTGCGGCTGTCACGGGC
GAACAAATTCAGGATATATTTTCCCTATTTTAGGACAATCTAAGGGACGTGGCTGTTATGATATCCAAAAAATTCTGATT
--------TGACAAATATT----------TTGATTGGTTAAAATTTCATCACCAGA------------------------
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---------------------------------------------------------------------------
>chr1A_1530
--------------------------------------------------------------------------------
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----------------------------------------------ACCAGCGCCGGCTGTGGGTCAAGGACCGGTCCAG
CGAGTGGTGGGAGCTGCGGAGCAGCCCGGGGTACCCGGAGGCGGAGTTCTTGCGGGAGTTCCGGATGGGCCGCGCCACGT
TCGGCATGGTCTGCGACGCGCTCGGCGCCGCCGTCGCCAAGGAGGACACGGCGCTCCGCGCCGCCATCCCGGTGCGGCAG
CGCGTGGCCGTCTGCGTCTGGCGGCTCGCCACGGGCGAGCCGCTCCGGCTCGTCTCCAAGCGGTTCGGCATCGGCATCTC
CACCTGCCACAAGCTGGTCCTGGAGGTGTGCGCCGCCATCCGCTCCATCCTCATGCCGCGCTTCCTCCGGTGGCCCGACC
GCGGCTCCGCCGCCGCCGCCGCCGTCAAGGCCAGCTTCGAGGCCAGCTCCGGGGTGCCGGACGTGGTGGGCGCCATGTAC
ACCACCCACATCCCCATCATCGCGCCCAAGGTGCACGTCGCCTCCTACTTCAACCGCCGGCACACGGAGCGCAACCAGAA
GACGTCCTACTCCATCACGCTGCAGGGGGTGGTCGGCCCGGACGGCTCCTTCACCGACGTCTGCATCGGCTGGCCGGGGT
CCCTGGCCGACGACCAGGTGCTCGACAAGTCGGCGCTGCAGCAGCGCGCCGCGGCCGGGATGATGGAGGGGTCCTGGGTG
GTCGGCGGCGCCAGCTACCCGCTCACCGACTGGTGCCTCGTCCCCTACACCCACCAGAACCTCACCTGGACGCAGCACGC
CTTCAACGAGAAGGTGGCCGACCTCCGGGGGGTGGCCGTGGACGCCTTCTCGAGCCTCAAGAGCCGGTGGGCGTGCCTGC
AGAAGCGCACCGAGGTGAAGCTCCAGGACCTGCCCGTGGTGCTCGGCGCCTGCTGCGTGCTCCACAACATCTGCGAGGCC
AGAGGGGAGGCCATGCCGCCGGAGCTCCGGGTGGAGGTGGAGGACGACCTCACCGTGCTGGACAACCCCGTGCGCTCCGA
CGCCGCCGCCAAGGCCAGGGACAAGATCGCGCACAACCTCCTCCACCGCGGCCTCGCCGGCAC-----------------
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---------------------------------------------------------------------------
>chr1D_1530
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------ACCAGCGCCGGCTGTGGGTCAAGGACCGGTCCAG
CGAGTGGTGGGAGCTGCGGAGCAGCCCGGGGTACCCGGAGGCGGAGTTCCTGCGGGAGTTCCGGATGGGCCGCGCCACGT
TCGGCATGGTCTGCGACGCGCTCGGCGCCGCCGTCGCCAAGGAGGACACGGCGCTACGCGCCGCCATCCCGGTGCGGCAG
CGCGTGGCCGTCTGCGTCTGGCGCCTGGCCACCGGCGAGCCGCTCCGGCTCGTCTCCAAGCGCTTCGGCATCGGCATCTC
CACCTGCCACAAGCTGGTCCTCGAGGTGTGCGCCGCCATCCGCTCCATCCTCATGCCGCGCTTCCTCCGGTGGCCGGACC
GCGGCTCCGCCGCCTCCGCCGCCGTGAAGGCCAGCTTCGAGGCCAGCTCCGGCGTGCCGGACGTGGTGGGCGCCATGTAC
ACCACCCACATCCCCATCATCGCGCCCAAGGTGCACGTCGCCTCCTACTTCAACCGCCGGCACACGGAGCGCAACCAGAA
GACGTCCTACTCCATCACGCTGCAGGGGGTGGTCGGCCCCGACGCCACCTTCACCGACGTCTGCATCGGCTGGCCGGGCT
CGCTCGCCGACGACCAGGTGCTCGACAAGTCGGCGCTGCAGCAGCGCGCCGCGGCCGGGATGATGGAGGGGTCCTGGGTG
GTCGGCGGCGCCAGCTACCCGCTCACCGACTGGTGCCTCGTCCCCTACACCCACCAGAACCTCACCTGGACGCAGCACGC
CTTCAACGAGAAGGTCGCCCAGCTCCGGGACGTGGCCGTCGACGCCTTCTCGCGCCTCAAGAGCCGCTGGGCCTGCCTGC
AGAAGCGCACCGAGGTGAAGCTCCAGGACCTGCCCGTGGTGCTCGGCGCCTGCTGCGTGCTCCACAACATCTGCGAGGCC
AGAGGGGAGGCCATGCCGCCGGAGCTACGGGTGGAGGTGGAGGACGACCTGGCCGTGCTGGACAACCCCGTGCGCTCCGA
CGCCGCCGCCAAAGCCAGGGACAAGATCGCGCACAACCTCCTCCACCGCGGCCTCGCCGGCAC-----------------
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>chr1B_1530
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----------------------------------------------ACCAGCGCCGGCTGTGGGTCAAGGACCGGTCCAG
CGAGTGGTGGGAGCTGCGGAGCAGCCCGGGGTACCCGGAGGCGGAGTTCCTGCGGGAGTTCCGGATGGGCCGCGCCACGT
TCGGCATGGTCTGCGACGCGCTCGGCGCCGCCGTCGCCAAGGAGGACACGGCGCTCCGCGCCGCCATCCCCGTCCGGCAG
CGCGTGGCGGTCTGCGTGTGGCGGCTCGCCACCGGCGAGCCGCTCCGGCTCGTCTCCAAGCGCTTCGGCATCGGCATCTC
CACCTGCCACAAGCTGGTGCTGGAGGTGTGCGCCGCCATCCGCTCCATCCTCATGCCGCGCTTCCTCCGCTGGCCGGACC
GCGGGTCCGCCGCCGCCGCCGCCGTGAAGGCCAGCTTCGAGGCCAGCTCGGGCGTGCCGGACGTGGTGGGCGCCATGTAC
ACCACCCACATCCCCATCATCGCGCCCAAGGTGCACGTGGCCTCCTACTTCAACCGCCGGCACACGGAGCGCAACCAGAA
GACGTCCTACTCCATCACGCTGCAGGGGGTGGTCGGCCCCGACGCCGCCTTCACCGACGTCTGCATCGGCTGGCCCGGGT
CCCTGGCCGACGACCAGGTGCTCGACAAGTCGGCGCTGCAGCAGCGCGCCGCGGCCGGGATGATGGAGGGGTCCTGGGTG
GTCGGCGGCGCCAGCTACCCGCTCACCGACTGGTGCCTCGTCCCCTACACCCACCAGAACCTCACCTGGACGCAGCACGC
CTTCAACGAGAAGGTCGCCGATCTCCGGGGGGTGGCCGTCGACGCCTTCTCGCGCCTCAAGAGCCGCTGGGCCTGCCTGC
AGAAGCGCACCGAGGTGAAGCTCCAGGACCTGCCCGTCGTGCTCGGCGCCTGCTGCGTGCTCCACAACATCTGCGAGGCC
AGAGGGGAGGCCATGCCGCCGGAGCTCCGGGTGGAGGTGGAGGACGACCTGGCCGTGCTCGACAACCCCGTGCGCTCCGA
CGCCGCCGCCAAGGCCAGGGACAAGATCGCGCACAACCTCCTCCACCGCGGCCTCGCCGGCACCGCCTTCTTCTAAT---
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---------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------S-----------------------------------------------
-----------------------------------------------S--S-----------------S-----------
-----------S-SSSS---SSSSS--------------------------------------------SSSSSS-----
--------------------------------------------------------S------------------S----
--------------------------------------------------------------------------------
-----------------S-------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
-----S-------------S------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
------------------S-------------------------------------------------------------
----------------------S---------------------------------------S-----------------
--------------------------------------------------------------------------------
------------SSSSSSS--SSS---------------------------------------------S----------
-----S-----S--------------------------------------------S-----------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S--------------------S-------
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--------------------------------------------------------------------------------
---------S--S--------------------------------------------S----------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------------------S--------------------S------S
S----------------S------S------------------------S--------S-----------S---SS----
-------------------------------------S-----------------------------------S------
--------S-----S----S-----------S------S-----------------------------------------
----------------S-------------S-S--------------S--------------------------------
--------------------------------------------------S-------------------S---------
---------------------S-----------------------------------------------------
>forward_389
--------------------------------------------------------------------------------
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-------------------------------------------------CAATCTCACCGCTGTAGGCT-----------
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>reverse_2393
--------------------------------------------------------------------------------
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------------------------------------------------------------------------ATGCCTCC
AGAAGCGCAC----------------------------------------------------------------------
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>forward_1532
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GGAGGCC
GCCACTAATACC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>reverse_3193
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CGTGGCGT
CAACAAAATCGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
