Multiple sequence alignment - TraesCS3B01G236900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G236900 chr3B 100.000 5160 0 0 1 5160 370732850 370727691 0.000000e+00 9529.0
1 TraesCS3B01G236900 chr3B 95.531 179 8 0 2402 2580 788213258 788213080 2.350000e-73 287.0
2 TraesCS3B01G236900 chr3B 96.000 175 5 1 2401 2575 592610475 592610647 3.040000e-72 283.0
3 TraesCS3B01G236900 chr3B 97.436 39 1 0 2143 2181 50913432 50913394 3.330000e-07 67.6
4 TraesCS3B01G236900 chr3D 93.599 2609 124 21 2565 5157 279792097 279794678 0.000000e+00 3853.0
5 TraesCS3B01G236900 chr3D 94.247 1912 69 16 1 1899 279789911 279791794 0.000000e+00 2883.0
6 TraesCS3B01G236900 chr3D 88.235 306 15 11 2119 2404 279791794 279792098 3.820000e-91 346.0
7 TraesCS3B01G236900 chr3D 89.815 216 19 1 1905 2120 162449559 162449771 1.830000e-69 274.0
8 TraesCS3B01G236900 chr3A 95.545 1459 41 8 404 1853 359574270 359572827 0.000000e+00 2313.0
9 TraesCS3B01G236900 chr3A 92.340 1436 67 18 2568 3984 359571737 359570326 0.000000e+00 2002.0
10 TraesCS3B01G236900 chr3A 91.399 1151 88 6 4010 5159 359570328 359569188 0.000000e+00 1567.0
11 TraesCS3B01G236900 chr3A 97.605 167 4 0 2400 2566 653414861 653415027 2.350000e-73 287.0
12 TraesCS3B01G236900 chr3A 89.189 222 22 1 151 370 359578598 359578377 5.090000e-70 276.0
13 TraesCS3B01G236900 chr3A 88.950 181 17 3 2403 2581 621507645 621507824 2.420000e-53 220.0
14 TraesCS3B01G236900 chr3A 97.368 114 2 1 2291 2404 359571850 359571738 5.270000e-45 193.0
15 TraesCS3B01G236900 chr3A 98.148 54 1 0 1846 1899 359572218 359572165 1.530000e-15 95.3
16 TraesCS3B01G236900 chr4B 98.182 165 3 0 2403 2567 336628296 336628460 6.540000e-74 289.0
17 TraesCS3B01G236900 chr1B 96.532 173 6 0 2399 2571 67054052 67053880 2.350000e-73 287.0
18 TraesCS3B01G236900 chr1B 90.741 216 17 2 1905 2120 676078319 676078531 8.460000e-73 285.0
19 TraesCS3B01G236900 chr1B 93.889 180 9 1 2403 2580 10382715 10382894 2.370000e-68 270.0
20 TraesCS3B01G236900 chr1B 89.326 178 16 3 2403 2580 656854726 656854552 2.420000e-53 220.0
21 TraesCS3B01G236900 chr1B 88.889 180 14 6 2403 2580 352881662 352881487 3.130000e-52 217.0
22 TraesCS3B01G236900 chr6B 89.177 231 22 2 1895 2125 478330788 478330561 8.460000e-73 285.0
23 TraesCS3B01G236900 chr6B 89.831 177 17 1 2402 2577 37974600 37974776 5.200000e-55 226.0
24 TraesCS3B01G236900 chr6B 100.000 28 0 0 2154 2181 207108845 207108818 9.000000e-03 52.8
25 TraesCS3B01G236900 chr4A 95.506 178 6 2 2400 2575 676920820 676920997 3.040000e-72 283.0
26 TraesCS3B01G236900 chr4A 89.130 184 16 4 2403 2583 362067911 362068093 5.200000e-55 226.0
27 TraesCS3B01G236900 chr1A 96.000 175 6 1 2403 2577 526575685 526575512 3.040000e-72 283.0
28 TraesCS3B01G236900 chr1A 97.059 34 0 1 381 413 454328254 454328221 7.220000e-04 56.5
29 TraesCS3B01G236900 chr6D 90.995 211 16 3 1905 2115 451066400 451066193 1.090000e-71 281.0
30 TraesCS3B01G236900 chr5B 95.977 174 6 1 2403 2576 64265810 64265982 1.090000e-71 281.0
31 TraesCS3B01G236900 chr5B 89.333 225 21 2 1896 2120 593144811 593145032 3.930000e-71 279.0
32 TraesCS3B01G236900 chr2A 95.480 177 7 1 2391 2566 113822282 113822458 1.090000e-71 281.0
33 TraesCS3B01G236900 chr2A 96.078 51 2 0 4526 4576 753789921 753789871 3.310000e-12 84.2
34 TraesCS3B01G236900 chr1D 90.233 215 17 3 1910 2123 422682695 422682906 1.420000e-70 278.0
35 TraesCS3B01G236900 chr1D 86.694 248 26 6 1869 2114 15293245 15293487 8.520000e-68 268.0
36 TraesCS3B01G236900 chr7A 89.862 217 18 3 1905 2120 619999601 619999814 5.090000e-70 276.0
37 TraesCS3B01G236900 chr7B 88.789 223 21 3 1901 2123 237479966 237480184 2.370000e-68 270.0
38 TraesCS3B01G236900 chr7B 92.391 184 9 4 2403 2582 588875746 588875564 1.840000e-64 257.0
39 TraesCS3B01G236900 chr7B 76.712 146 33 1 24 169 601572854 601572998 4.280000e-11 80.5
40 TraesCS3B01G236900 chr2B 90.659 182 15 2 2400 2580 23589090 23589270 1.860000e-59 241.0
41 TraesCS3B01G236900 chr5A 91.837 49 3 1 2136 2183 477433300 477433252 3.330000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G236900 chr3B 370727691 370732850 5159 True 9529.000000 9529 100.000 1 5160 1 chr3B.!!$R2 5159
1 TraesCS3B01G236900 chr3D 279789911 279794678 4767 False 2360.666667 3853 92.027 1 5157 3 chr3D.!!$F2 5156
2 TraesCS3B01G236900 chr3A 359569188 359574270 5082 True 1234.060000 2313 94.960 404 5159 5 chr3A.!!$R2 4755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 479 0.029834 GTCAATGACGCATGGGCATC 59.970 55.0 10.10 1.43 41.24 3.91 F
608 619 0.039437 AAGAGAGGCACGTACGTGTG 60.039 55.0 39.56 22.88 46.90 3.82 F
651 662 0.108207 GGATATGTCTGCCTGCTGCT 59.892 55.0 0.00 0.00 42.00 4.24 F
2090 2732 0.110733 GACGATCTAGAGGTACGCGC 60.111 60.0 5.73 0.00 0.00 6.86 F
3417 4210 0.107557 AAACCGTCCTTGTCAACCGT 60.108 50.0 0.00 0.00 0.00 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 2713 0.110733 GCGCGTACCTCTAGATCGTC 60.111 60.0 8.43 0.0 0.00 4.20 R
2091 2733 0.246635 TCTCTCAGTTTACAGGGCGC 59.753 55.0 0.00 0.0 0.00 6.53 R
2548 3330 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.0 0.00 0.0 0.00 4.12 R
4066 4868 0.834687 AGGCCTGGTTCCAGTCGTTA 60.835 55.0 3.11 0.0 32.56 3.18 R
4406 5212 0.108756 GGCTATAATCCCTCGTCGGC 60.109 60.0 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 57 0.531974 GCTTCGACAAGGACACACCA 60.532 55.000 0.00 0.00 42.04 4.17
62 66 1.981256 AGGACACACCACCAAATGTC 58.019 50.000 0.00 0.00 42.04 3.06
67 71 0.179067 ACACCACCAAATGTCGTCGT 60.179 50.000 0.00 0.00 0.00 4.34
88 92 1.136961 TACATGGAGGTGGGGCACAA 61.137 55.000 0.00 0.00 35.86 3.33
190 194 3.621268 TGTAGTATGAATTTGCGCTGTCC 59.379 43.478 9.73 0.00 0.00 4.02
200 204 2.586079 CGCTGTCCGCCGATGAAT 60.586 61.111 0.00 0.00 34.21 2.57
201 205 2.173669 CGCTGTCCGCCGATGAATT 61.174 57.895 0.00 0.00 34.21 2.17
202 206 0.874175 CGCTGTCCGCCGATGAATTA 60.874 55.000 0.00 0.00 34.21 1.40
204 208 1.538204 GCTGTCCGCCGATGAATTAGA 60.538 52.381 0.00 0.00 0.00 2.10
205 209 2.821546 CTGTCCGCCGATGAATTAGAA 58.178 47.619 0.00 0.00 0.00 2.10
206 210 3.393800 CTGTCCGCCGATGAATTAGAAT 58.606 45.455 0.00 0.00 0.00 2.40
208 212 3.181470 TGTCCGCCGATGAATTAGAATCA 60.181 43.478 0.00 0.00 0.00 2.57
209 213 3.997021 GTCCGCCGATGAATTAGAATCAT 59.003 43.478 0.00 0.00 40.14 2.45
210 214 4.452455 GTCCGCCGATGAATTAGAATCATT 59.548 41.667 0.00 0.00 37.64 2.57
211 215 4.452114 TCCGCCGATGAATTAGAATCATTG 59.548 41.667 0.00 0.00 37.64 2.82
212 216 4.214119 CCGCCGATGAATTAGAATCATTGT 59.786 41.667 0.00 0.00 37.64 2.71
213 217 5.377358 CGCCGATGAATTAGAATCATTGTC 58.623 41.667 0.00 0.00 37.64 3.18
214 218 5.615544 CGCCGATGAATTAGAATCATTGTCC 60.616 44.000 0.00 0.00 37.64 4.02
215 219 5.615544 GCCGATGAATTAGAATCATTGTCCG 60.616 44.000 0.00 0.00 37.64 4.79
216 220 5.696270 CCGATGAATTAGAATCATTGTCCGA 59.304 40.000 0.00 0.00 37.64 4.55
217 221 6.369890 CCGATGAATTAGAATCATTGTCCGAT 59.630 38.462 0.00 0.00 37.64 4.18
218 222 7.232300 CGATGAATTAGAATCATTGTCCGATG 58.768 38.462 0.00 0.00 37.64 3.84
219 223 7.116805 CGATGAATTAGAATCATTGTCCGATGA 59.883 37.037 0.00 0.00 37.64 2.92
220 224 8.859236 ATGAATTAGAATCATTGTCCGATGAT 57.141 30.769 4.48 4.48 46.06 2.45
229 233 3.459232 TTGTCCGATGATGAGCTAAGG 57.541 47.619 0.00 0.00 0.00 2.69
240 244 3.238788 TGAGCTAAGGTATGATCCGGA 57.761 47.619 6.61 6.61 0.00 5.14
261 265 6.260050 CCGGATTACTTTATGTAGTGTTGCAT 59.740 38.462 0.00 0.00 33.92 3.96
283 287 2.738314 GGGTTGCATGCATTTGAAACTC 59.262 45.455 23.37 11.87 35.75 3.01
290 294 5.039333 GCATGCATTTGAAACTCCAGATAC 58.961 41.667 14.21 0.00 0.00 2.24
293 297 6.647334 TGCATTTGAAACTCCAGATACAAA 57.353 33.333 0.00 0.00 0.00 2.83
298 302 5.560722 TGAAACTCCAGATACAAAGGACA 57.439 39.130 0.00 0.00 0.00 4.02
299 303 6.126863 TGAAACTCCAGATACAAAGGACAT 57.873 37.500 0.00 0.00 0.00 3.06
301 305 5.762179 AACTCCAGATACAAAGGACATGA 57.238 39.130 0.00 0.00 0.00 3.07
302 306 5.762179 ACTCCAGATACAAAGGACATGAA 57.238 39.130 0.00 0.00 0.00 2.57
312 316 0.107508 AGGACATGAATGTGGGAGCG 60.108 55.000 0.00 0.00 41.95 5.03
320 324 4.898829 TGAATGTGGGAGCGAAAATATG 57.101 40.909 0.00 0.00 0.00 1.78
324 328 3.531538 TGTGGGAGCGAAAATATGAGAC 58.468 45.455 0.00 0.00 0.00 3.36
334 338 4.503007 CGAAAATATGAGACGTGTCCGATT 59.497 41.667 10.56 6.78 37.88 3.34
344 348 1.092921 GTGTCCGATTAATGCCCGCA 61.093 55.000 0.00 0.00 0.00 5.69
345 349 0.813610 TGTCCGATTAATGCCCGCAG 60.814 55.000 0.00 0.00 0.00 5.18
347 351 0.396435 TCCGATTAATGCCCGCAGAT 59.604 50.000 0.00 0.00 0.00 2.90
348 352 0.518636 CCGATTAATGCCCGCAGATG 59.481 55.000 0.00 0.00 0.00 2.90
349 353 0.518636 CGATTAATGCCCGCAGATGG 59.481 55.000 0.00 0.00 0.00 3.51
357 361 4.899239 CCGCAGATGGGCTCGGAC 62.899 72.222 0.00 0.00 38.65 4.79
378 382 4.735132 TCCGCGAGCGTTTGAGGG 62.735 66.667 8.23 0.45 37.81 4.30
393 397 0.244721 GAGGGGCAGATTTGTTGTGC 59.755 55.000 0.00 0.00 43.71 4.57
426 434 2.434185 CAACTAGGAGGCGCGCAA 60.434 61.111 34.42 11.19 0.00 4.85
468 479 0.029834 GTCAATGACGCATGGGCATC 59.970 55.000 10.10 1.43 41.24 3.91
553 564 2.386064 AAACAACCGCACTAGCCCGA 62.386 55.000 4.39 0.00 37.52 5.14
608 619 0.039437 AAGAGAGGCACGTACGTGTG 60.039 55.000 39.56 22.88 46.90 3.82
651 662 0.108207 GGATATGTCTGCCTGCTGCT 59.892 55.000 0.00 0.00 42.00 4.24
801 815 2.026729 CCAACTCCTTCCTTCCTTCCTC 60.027 54.545 0.00 0.00 0.00 3.71
1172 1193 6.687105 GCAAATCGAAGCGTCTGTAAATTAAT 59.313 34.615 0.00 0.00 0.00 1.40
1525 1552 4.883354 CCCATCCGCAGCCCTTCC 62.883 72.222 0.00 0.00 0.00 3.46
1894 2536 8.448615 GCTACAACATTAATTACTTCCTTTCGT 58.551 33.333 0.00 0.00 0.00 3.85
1900 2542 8.448615 ACATTAATTACTTCCTTTCGTTACTGC 58.551 33.333 0.00 0.00 0.00 4.40
1901 2543 8.665685 CATTAATTACTTCCTTTCGTTACTGCT 58.334 33.333 0.00 0.00 0.00 4.24
1902 2544 9.880157 ATTAATTACTTCCTTTCGTTACTGCTA 57.120 29.630 0.00 0.00 0.00 3.49
1903 2545 9.709495 TTAATTACTTCCTTTCGTTACTGCTAA 57.291 29.630 0.00 0.00 0.00 3.09
1904 2546 7.592439 ATTACTTCCTTTCGTTACTGCTAAC 57.408 36.000 0.00 0.00 0.00 2.34
1905 2547 5.211174 ACTTCCTTTCGTTACTGCTAACT 57.789 39.130 0.00 0.00 31.47 2.24
1906 2548 5.228665 ACTTCCTTTCGTTACTGCTAACTC 58.771 41.667 0.00 0.00 31.47 3.01
1907 2549 4.184079 TCCTTTCGTTACTGCTAACTCC 57.816 45.455 0.00 0.00 31.47 3.85
1908 2550 3.056322 TCCTTTCGTTACTGCTAACTCCC 60.056 47.826 0.00 0.00 31.47 4.30
1909 2551 3.056035 CCTTTCGTTACTGCTAACTCCCT 60.056 47.826 0.00 0.00 31.47 4.20
1910 2552 4.562963 CCTTTCGTTACTGCTAACTCCCTT 60.563 45.833 0.00 0.00 31.47 3.95
1911 2553 4.612264 TTCGTTACTGCTAACTCCCTTT 57.388 40.909 0.00 0.00 31.47 3.11
1912 2554 4.184079 TCGTTACTGCTAACTCCCTTTC 57.816 45.455 0.00 0.00 31.47 2.62
1913 2555 3.575256 TCGTTACTGCTAACTCCCTTTCA 59.425 43.478 0.00 0.00 31.47 2.69
1914 2556 3.927142 CGTTACTGCTAACTCCCTTTCAG 59.073 47.826 0.00 0.00 31.47 3.02
1915 2557 4.560919 CGTTACTGCTAACTCCCTTTCAGT 60.561 45.833 0.00 0.00 38.24 3.41
1916 2558 5.306394 GTTACTGCTAACTCCCTTTCAGTT 58.694 41.667 0.00 0.00 37.80 3.16
1917 2559 4.439253 ACTGCTAACTCCCTTTCAGTTT 57.561 40.909 0.00 0.00 35.63 2.66
1918 2560 5.562298 ACTGCTAACTCCCTTTCAGTTTA 57.438 39.130 0.00 0.00 35.63 2.01
1919 2561 5.306394 ACTGCTAACTCCCTTTCAGTTTAC 58.694 41.667 0.00 0.00 35.63 2.01
1920 2562 5.163237 ACTGCTAACTCCCTTTCAGTTTACA 60.163 40.000 0.00 0.00 35.63 2.41
1921 2563 5.686753 TGCTAACTCCCTTTCAGTTTACAA 58.313 37.500 0.00 0.00 35.63 2.41
1922 2564 5.763204 TGCTAACTCCCTTTCAGTTTACAAG 59.237 40.000 0.00 0.00 35.63 3.16
1923 2565 5.763698 GCTAACTCCCTTTCAGTTTACAAGT 59.236 40.000 0.00 0.00 35.63 3.16
1924 2566 6.073167 GCTAACTCCCTTTCAGTTTACAAGTC 60.073 42.308 0.00 0.00 35.63 3.01
1925 2567 4.715713 ACTCCCTTTCAGTTTACAAGTCC 58.284 43.478 0.00 0.00 0.00 3.85
1926 2568 4.412528 ACTCCCTTTCAGTTTACAAGTCCT 59.587 41.667 0.00 0.00 0.00 3.85
1927 2569 5.605488 ACTCCCTTTCAGTTTACAAGTCCTA 59.395 40.000 0.00 0.00 0.00 2.94
1928 2570 5.861727 TCCCTTTCAGTTTACAAGTCCTAC 58.138 41.667 0.00 0.00 0.00 3.18
1929 2571 4.689345 CCCTTTCAGTTTACAAGTCCTACG 59.311 45.833 0.00 0.00 0.00 3.51
1930 2572 5.295152 CCTTTCAGTTTACAAGTCCTACGT 58.705 41.667 0.00 0.00 0.00 3.57
1931 2573 5.176958 CCTTTCAGTTTACAAGTCCTACGTG 59.823 44.000 0.00 0.00 33.76 4.49
1932 2574 4.924305 TCAGTTTACAAGTCCTACGTGT 57.076 40.909 0.00 4.18 43.02 4.49
1933 2575 6.389830 TTCAGTTTACAAGTCCTACGTGTA 57.610 37.500 0.00 2.37 40.98 2.90
1934 2576 6.579666 TCAGTTTACAAGTCCTACGTGTAT 57.420 37.500 0.00 0.00 41.34 2.29
1935 2577 7.686438 TCAGTTTACAAGTCCTACGTGTATA 57.314 36.000 0.00 0.77 41.34 1.47
1936 2578 7.530010 TCAGTTTACAAGTCCTACGTGTATAC 58.470 38.462 14.14 14.14 41.34 1.47
1937 2579 7.174772 TCAGTTTACAAGTCCTACGTGTATACA 59.825 37.037 19.80 0.08 42.46 2.29
1938 2580 7.972277 CAGTTTACAAGTCCTACGTGTATACAT 59.028 37.037 19.80 0.00 42.46 2.29
1939 2581 9.177608 AGTTTACAAGTCCTACGTGTATACATA 57.822 33.333 19.80 0.00 42.46 2.29
1940 2582 9.443283 GTTTACAAGTCCTACGTGTATACATAG 57.557 37.037 9.18 7.61 41.34 2.23
1941 2583 6.630444 ACAAGTCCTACGTGTATACATAGG 57.370 41.667 20.12 20.12 38.97 2.57
1942 2584 6.125029 ACAAGTCCTACGTGTATACATAGGT 58.875 40.000 23.15 17.17 38.97 3.08
1943 2585 6.604795 ACAAGTCCTACGTGTATACATAGGTT 59.395 38.462 23.15 13.68 38.97 3.50
1944 2586 6.630444 AGTCCTACGTGTATACATAGGTTG 57.370 41.667 23.15 15.63 36.39 3.77
1945 2587 6.125029 AGTCCTACGTGTATACATAGGTTGT 58.875 40.000 23.15 12.09 42.62 3.32
1946 2588 6.261826 AGTCCTACGTGTATACATAGGTTGTC 59.738 42.308 23.15 15.43 39.87 3.18
1947 2589 6.038603 GTCCTACGTGTATACATAGGTTGTCA 59.961 42.308 23.15 8.68 39.87 3.58
1948 2590 6.602803 TCCTACGTGTATACATAGGTTGTCAA 59.397 38.462 23.15 8.15 39.87 3.18
1949 2591 7.286087 TCCTACGTGTATACATAGGTTGTCAAT 59.714 37.037 23.15 3.57 39.87 2.57
1950 2592 7.924412 CCTACGTGTATACATAGGTTGTCAATT 59.076 37.037 18.71 0.06 39.87 2.32
1951 2593 9.309516 CTACGTGTATACATAGGTTGTCAATTT 57.690 33.333 9.18 0.00 39.87 1.82
1952 2594 8.556213 ACGTGTATACATAGGTTGTCAATTTT 57.444 30.769 9.18 0.00 39.87 1.82
1953 2595 9.656040 ACGTGTATACATAGGTTGTCAATTTTA 57.344 29.630 9.18 0.00 39.87 1.52
1959 2601 7.404671 ACATAGGTTGTCAATTTTATCACCC 57.595 36.000 0.00 0.00 30.89 4.61
1960 2602 6.951198 ACATAGGTTGTCAATTTTATCACCCA 59.049 34.615 0.00 0.00 30.89 4.51
1961 2603 7.453126 ACATAGGTTGTCAATTTTATCACCCAA 59.547 33.333 0.00 0.00 30.89 4.12
1962 2604 6.739331 AGGTTGTCAATTTTATCACCCAAA 57.261 33.333 0.00 0.00 0.00 3.28
1963 2605 7.315066 AGGTTGTCAATTTTATCACCCAAAT 57.685 32.000 0.00 0.00 0.00 2.32
1964 2606 8.429237 AGGTTGTCAATTTTATCACCCAAATA 57.571 30.769 0.00 0.00 0.00 1.40
1965 2607 9.045745 AGGTTGTCAATTTTATCACCCAAATAT 57.954 29.630 0.00 0.00 0.00 1.28
2018 2660 9.136323 ACCTTTTGAAAATAGAACATCTGAAGT 57.864 29.630 0.00 0.00 0.00 3.01
2019 2661 9.971922 CCTTTTGAAAATAGAACATCTGAAGTT 57.028 29.630 0.00 0.00 0.00 2.66
2087 2729 5.681982 GTCAAATTGACGATCTAGAGGTACG 59.318 44.000 10.58 4.42 37.67 3.67
2088 2730 3.900388 ATTGACGATCTAGAGGTACGC 57.100 47.619 0.00 0.23 0.00 4.42
2089 2731 1.215244 TGACGATCTAGAGGTACGCG 58.785 55.000 3.53 3.53 0.00 6.01
2090 2732 0.110733 GACGATCTAGAGGTACGCGC 60.111 60.000 5.73 0.00 0.00 6.86
2091 2733 1.154635 CGATCTAGAGGTACGCGCG 60.155 63.158 30.96 30.96 0.00 6.86
2092 2734 1.440684 GATCTAGAGGTACGCGCGC 60.441 63.158 32.58 23.91 0.00 6.86
2105 2747 4.147322 CGCGCGCCCTGTAAACTG 62.147 66.667 27.72 2.72 0.00 3.16
2106 2748 2.740826 GCGCGCCCTGTAAACTGA 60.741 61.111 23.24 0.00 0.00 3.41
2107 2749 2.740714 GCGCGCCCTGTAAACTGAG 61.741 63.158 23.24 0.00 0.00 3.35
2108 2750 1.080093 CGCGCCCTGTAAACTGAGA 60.080 57.895 0.00 0.00 0.00 3.27
2109 2751 1.078759 CGCGCCCTGTAAACTGAGAG 61.079 60.000 0.00 0.00 0.00 3.20
2110 2752 0.246635 GCGCCCTGTAAACTGAGAGA 59.753 55.000 0.00 0.00 0.00 3.10
2111 2753 1.737363 GCGCCCTGTAAACTGAGAGAG 60.737 57.143 0.00 0.00 0.00 3.20
2112 2754 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
2113 2755 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
2114 2756 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
2115 2757 2.763448 CCCTGTAAACTGAGAGAGAGGG 59.237 54.545 0.00 0.00 33.23 4.30
2116 2758 2.763448 CCTGTAAACTGAGAGAGAGGGG 59.237 54.545 0.00 0.00 0.00 4.79
2214 2857 1.804326 CGGTGAGTTAAGGCCGTCG 60.804 63.158 0.00 0.00 39.41 5.12
2247 3004 4.813161 CCAGTGTACAAATATGCTCCTCTG 59.187 45.833 0.00 0.00 0.00 3.35
2267 3024 8.742777 TCCTCTGTTTTATTTTCAAGGATGATG 58.257 33.333 0.00 0.00 34.96 3.07
2311 3093 4.797800 AAAGTAAGTCTCGGTACTTCCC 57.202 45.455 6.59 1.12 39.15 3.97
2317 3099 2.751436 TCGGTACTTCCCGTCCCG 60.751 66.667 0.00 0.00 45.51 5.14
2318 3100 2.751436 CGGTACTTCCCGTCCCGA 60.751 66.667 0.00 0.00 46.94 5.14
2319 3101 2.123428 CGGTACTTCCCGTCCCGAT 61.123 63.158 0.00 0.00 46.94 4.18
2412 3194 3.155501 CCACTAGGTTATACTCCCTCCG 58.844 54.545 0.00 0.00 32.08 4.63
2413 3195 3.436180 CCACTAGGTTATACTCCCTCCGT 60.436 52.174 0.00 0.00 32.08 4.69
2414 3196 4.213513 CACTAGGTTATACTCCCTCCGTT 58.786 47.826 0.00 0.00 32.08 4.44
2415 3197 4.277921 CACTAGGTTATACTCCCTCCGTTC 59.722 50.000 0.00 0.00 32.08 3.95
2416 3198 2.675583 AGGTTATACTCCCTCCGTTCC 58.324 52.381 0.00 0.00 0.00 3.62
2417 3199 2.246849 AGGTTATACTCCCTCCGTTCCT 59.753 50.000 0.00 0.00 0.00 3.36
2418 3200 3.464833 AGGTTATACTCCCTCCGTTCCTA 59.535 47.826 0.00 0.00 0.00 2.94
2419 3201 4.078980 AGGTTATACTCCCTCCGTTCCTAA 60.079 45.833 0.00 0.00 0.00 2.69
2420 3202 4.651045 GGTTATACTCCCTCCGTTCCTAAA 59.349 45.833 0.00 0.00 0.00 1.85
2421 3203 5.306419 GGTTATACTCCCTCCGTTCCTAAAT 59.694 44.000 0.00 0.00 0.00 1.40
2422 3204 6.494835 GGTTATACTCCCTCCGTTCCTAAATA 59.505 42.308 0.00 0.00 0.00 1.40
2423 3205 7.374272 GTTATACTCCCTCCGTTCCTAAATAC 58.626 42.308 0.00 0.00 0.00 1.89
2424 3206 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2425 3207 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2426 3208 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2427 3209 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2428 3210 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2429 3211 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2430 3212 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2431 3213 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2432 3214 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2433 3215 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2434 3216 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2435 3217 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2436 3218 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
2437 3219 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
2447 3229 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
2448 3230 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
2449 3231 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2450 3232 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2451 3233 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2452 3234 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2453 3235 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2454 3236 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2455 3237 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2456 3238 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2457 3239 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2459 3241 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2460 3242 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2461 3243 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2462 3244 6.758593 TTTCAACAAGTGACTACATACGAC 57.241 37.500 0.00 0.00 35.39 4.34
2463 3245 4.469552 TCAACAAGTGACTACATACGACG 58.530 43.478 0.00 0.00 0.00 5.12
2464 3246 2.860062 ACAAGTGACTACATACGACGC 58.140 47.619 0.00 0.00 0.00 5.19
2465 3247 2.227149 ACAAGTGACTACATACGACGCA 59.773 45.455 0.00 0.00 0.00 5.24
2466 3248 3.239254 CAAGTGACTACATACGACGCAA 58.761 45.455 0.00 0.00 0.00 4.85
2467 3249 3.564235 AGTGACTACATACGACGCAAA 57.436 42.857 0.00 0.00 0.00 3.68
2468 3250 3.904571 AGTGACTACATACGACGCAAAA 58.095 40.909 0.00 0.00 0.00 2.44
2469 3251 4.491676 AGTGACTACATACGACGCAAAAT 58.508 39.130 0.00 0.00 0.00 1.82
2470 3252 4.326278 AGTGACTACATACGACGCAAAATG 59.674 41.667 0.00 0.00 0.00 2.32
2471 3253 4.325204 GTGACTACATACGACGCAAAATGA 59.675 41.667 0.00 0.00 0.00 2.57
2472 3254 4.561213 TGACTACATACGACGCAAAATGAG 59.439 41.667 0.00 0.00 0.00 2.90
2473 3255 4.491676 ACTACATACGACGCAAAATGAGT 58.508 39.130 0.00 0.00 31.65 3.41
2474 3256 3.722555 ACATACGACGCAAAATGAGTG 57.277 42.857 0.00 0.00 28.29 3.51
2475 3257 3.322369 ACATACGACGCAAAATGAGTGA 58.678 40.909 0.00 0.00 28.29 3.41
2476 3258 3.743911 ACATACGACGCAAAATGAGTGAA 59.256 39.130 0.00 0.00 28.29 3.18
2477 3259 4.391830 ACATACGACGCAAAATGAGTGAAT 59.608 37.500 0.00 0.00 28.29 2.57
2478 3260 3.455619 ACGACGCAAAATGAGTGAATC 57.544 42.857 0.00 0.00 28.29 2.52
2479 3261 3.067106 ACGACGCAAAATGAGTGAATCT 58.933 40.909 0.00 0.00 28.29 2.40
2480 3262 4.242475 ACGACGCAAAATGAGTGAATCTA 58.758 39.130 0.00 0.00 28.29 1.98
2481 3263 4.091509 ACGACGCAAAATGAGTGAATCTAC 59.908 41.667 0.00 0.00 28.29 2.59
2482 3264 4.091365 CGACGCAAAATGAGTGAATCTACA 59.909 41.667 0.00 0.00 28.29 2.74
2483 3265 5.283060 ACGCAAAATGAGTGAATCTACAC 57.717 39.130 0.00 0.00 40.60 2.90
2523 3305 7.504924 CATACATCCGTATGTTGGGTTTATT 57.495 36.000 0.00 0.00 46.70 1.40
2524 3306 7.936584 CATACATCCGTATGTTGGGTTTATTT 58.063 34.615 0.00 0.00 46.70 1.40
2525 3307 6.202516 ACATCCGTATGTTGGGTTTATTTG 57.797 37.500 0.00 0.00 44.07 2.32
2526 3308 5.946972 ACATCCGTATGTTGGGTTTATTTGA 59.053 36.000 0.00 0.00 44.07 2.69
2527 3309 6.434652 ACATCCGTATGTTGGGTTTATTTGAA 59.565 34.615 0.00 0.00 44.07 2.69
2528 3310 6.896021 TCCGTATGTTGGGTTTATTTGAAA 57.104 33.333 0.00 0.00 0.00 2.69
2529 3311 7.469537 TCCGTATGTTGGGTTTATTTGAAAT 57.530 32.000 0.00 0.00 0.00 2.17
2530 3312 7.316640 TCCGTATGTTGGGTTTATTTGAAATG 58.683 34.615 0.00 0.00 0.00 2.32
2531 3313 6.035542 CCGTATGTTGGGTTTATTTGAAATGC 59.964 38.462 0.00 0.00 0.00 3.56
2532 3314 6.035542 CGTATGTTGGGTTTATTTGAAATGCC 59.964 38.462 0.00 0.61 0.00 4.40
2533 3315 5.559148 TGTTGGGTTTATTTGAAATGCCT 57.441 34.783 0.00 0.00 0.00 4.75
2534 3316 6.672266 TGTTGGGTTTATTTGAAATGCCTA 57.328 33.333 0.00 0.00 0.00 3.93
2535 3317 6.696411 TGTTGGGTTTATTTGAAATGCCTAG 58.304 36.000 0.00 0.00 0.00 3.02
2536 3318 6.495181 TGTTGGGTTTATTTGAAATGCCTAGA 59.505 34.615 0.00 0.00 0.00 2.43
2537 3319 7.015682 TGTTGGGTTTATTTGAAATGCCTAGAA 59.984 33.333 0.00 0.00 0.00 2.10
2538 3320 7.546250 TGGGTTTATTTGAAATGCCTAGAAA 57.454 32.000 0.00 0.00 0.00 2.52
2539 3321 7.610865 TGGGTTTATTTGAAATGCCTAGAAAG 58.389 34.615 0.00 0.00 0.00 2.62
2540 3322 7.453126 TGGGTTTATTTGAAATGCCTAGAAAGA 59.547 33.333 0.00 0.00 0.00 2.52
2541 3323 7.759886 GGGTTTATTTGAAATGCCTAGAAAGAC 59.240 37.037 0.00 0.00 0.00 3.01
2542 3324 8.303876 GGTTTATTTGAAATGCCTAGAAAGACA 58.696 33.333 0.00 0.00 0.00 3.41
2543 3325 9.691362 GTTTATTTGAAATGCCTAGAAAGACAA 57.309 29.630 0.00 0.00 0.00 3.18
2544 3326 9.912634 TTTATTTGAAATGCCTAGAAAGACAAG 57.087 29.630 0.00 0.00 0.00 3.16
2545 3327 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
2546 3328 8.635765 ATTTGAAATGCCTAGAAAGACAAGTA 57.364 30.769 0.00 0.00 0.00 2.24
2547 3329 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
2548 3330 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
2549 3331 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2550 3332 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
2551 3333 7.396540 AATGCCTAGAAAGACAAGTATTTGG 57.603 36.000 2.81 0.00 38.66 3.28
2552 3334 5.253330 TGCCTAGAAAGACAAGTATTTGGG 58.747 41.667 2.81 0.00 38.66 4.12
2553 3335 5.013704 TGCCTAGAAAGACAAGTATTTGGGA 59.986 40.000 2.81 0.00 38.66 4.37
2554 3336 5.944007 GCCTAGAAAGACAAGTATTTGGGAA 59.056 40.000 2.81 0.00 38.66 3.97
2555 3337 6.127980 GCCTAGAAAGACAAGTATTTGGGAAC 60.128 42.308 2.81 0.00 38.66 3.62
2556 3338 5.941948 AGAAAGACAAGTATTTGGGAACG 57.058 39.130 2.81 0.00 38.66 3.95
2557 3339 4.760204 AGAAAGACAAGTATTTGGGAACGG 59.240 41.667 2.81 0.00 38.66 4.44
2558 3340 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
2559 3341 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
2560 3342 3.007635 GACAAGTATTTGGGAACGGAGG 58.992 50.000 2.81 0.00 38.66 4.30
2561 3343 2.290705 ACAAGTATTTGGGAACGGAGGG 60.291 50.000 2.81 0.00 38.66 4.30
2562 3344 1.961133 AGTATTTGGGAACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
2563 3345 1.838077 AGTATTTGGGAACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
2579 3364 5.540719 CGGAGGGAGTAGATAAGAAAAGGAT 59.459 44.000 0.00 0.00 0.00 3.24
2952 3742 0.324943 ACACCGAGGAGGACAAATGG 59.675 55.000 0.00 0.00 45.00 3.16
2956 3746 2.308866 ACCGAGGAGGACAAATGGAATT 59.691 45.455 0.00 0.00 45.00 2.17
3071 3861 1.636148 ACAGTGAAGCCATGCCAATT 58.364 45.000 0.00 0.00 0.00 2.32
3114 3904 1.307097 ATCTAGCGTACTGTCGGGTC 58.693 55.000 0.00 0.00 0.00 4.46
3141 3931 8.447924 AGAGTTCTTGTTTACTCCCTAAAAAC 57.552 34.615 0.00 0.00 41.31 2.43
3144 3934 7.553760 AGTTCTTGTTTACTCCCTAAAAACGAA 59.446 33.333 0.00 0.00 36.19 3.85
3201 3991 2.509964 AGAATAGGAAAGCCACCGGAAT 59.490 45.455 9.46 0.00 36.29 3.01
3249 4039 6.291377 GCCCACAGATAGAATAATTGACAGA 58.709 40.000 0.00 0.00 0.00 3.41
3251 4041 7.275183 CCCACAGATAGAATAATTGACAGACA 58.725 38.462 0.00 0.00 0.00 3.41
3253 4043 8.771766 CCACAGATAGAATAATTGACAGACATG 58.228 37.037 0.00 0.00 0.00 3.21
3417 4210 0.107557 AAACCGTCCTTGTCAACCGT 60.108 50.000 0.00 0.00 0.00 4.83
3423 4216 2.033492 CGTCCTTGTCAACCGTGTAAAC 60.033 50.000 0.00 0.00 0.00 2.01
3514 4310 6.713903 GCCATCAAGATCTTTAATCATGAGGA 59.286 38.462 4.86 0.00 31.73 3.71
3559 4361 5.081728 TCTAGTAGCTAACTGACCAAACCA 58.918 41.667 0.00 0.00 39.39 3.67
3665 4467 2.909006 TGAGCTGGAGGAGAAGAACAAT 59.091 45.455 0.00 0.00 0.00 2.71
3954 4756 2.753966 CGGATCGTGGTACGTCGGT 61.754 63.158 0.00 1.77 43.14 4.69
4006 4808 8.283699 TCTTTAATTCATTCATGATGACTGCA 57.716 30.769 7.80 0.00 44.28 4.41
4066 4868 5.105473 GGTGGTATGTACGTATATGCAGGAT 60.105 44.000 18.99 0.00 0.00 3.24
4067 4869 6.095860 GGTGGTATGTACGTATATGCAGGATA 59.904 42.308 18.99 0.00 0.00 2.59
4120 4922 2.851263 TGACCAAGGCTGTTAACGAT 57.149 45.000 0.26 0.00 0.00 3.73
4159 4961 2.126618 CTCGTGCTCACCGCGTAA 60.127 61.111 4.92 0.00 46.95 3.18
4169 4971 0.859232 CACCGCGTAATATGCAGGAC 59.141 55.000 17.56 0.00 31.48 3.85
4227 5031 6.904463 TTTGTAGCCATACGGTCATATAGA 57.096 37.500 0.00 0.00 34.39 1.98
4277 5082 6.293626 GGATGTAACGTAGAAGCGGTAATCTA 60.294 42.308 0.00 0.00 35.71 1.98
4293 5098 6.128902 CGGTAATCTATTTGCAATAGTCGGAC 60.129 42.308 0.00 0.00 0.00 4.79
4324 5129 2.104622 TGATGAGTCACTCTGCACCAAA 59.895 45.455 6.33 0.00 0.00 3.28
4335 5141 4.518211 ACTCTGCACCAAAAAGATCAAGAG 59.482 41.667 0.00 0.00 0.00 2.85
4336 5142 3.254166 TCTGCACCAAAAAGATCAAGAGC 59.746 43.478 0.00 0.00 0.00 4.09
4363 5169 2.922503 TCTTCCGTGGGAGCAGCA 60.923 61.111 0.00 0.00 31.21 4.41
4383 5189 6.324819 CAGCAAGAAATGTTTGTATCGGATT 58.675 36.000 0.00 0.00 0.00 3.01
4405 5211 2.084546 CTGGAAGATCGGAACCAAACC 58.915 52.381 0.00 0.00 34.07 3.27
4406 5212 3.505723 CTGGAAGATCGGAACCAAACCG 61.506 54.545 0.00 0.00 44.44 4.44
4418 5224 3.387947 AAACCGCCGACGAGGGAT 61.388 61.111 10.55 0.00 43.93 3.85
4425 5231 0.108756 GCCGACGAGGGATTATAGCC 60.109 60.000 0.00 0.00 41.48 3.93
4457 5263 3.646715 CCAACCTCCGCCAAGGGA 61.647 66.667 4.19 0.00 41.04 4.20
4491 5297 2.808202 CGGAGCTCATTCCCATACCTTG 60.808 54.545 17.19 0.00 33.46 3.61
4576 5382 7.479980 GCATAATGCAGACAAATTACCTGTTA 58.520 34.615 0.00 0.00 44.26 2.41
4579 5385 3.756434 TGCAGACAAATTACCTGTTAGGC 59.244 43.478 0.00 0.00 39.63 3.93
4658 5464 0.178873 AGCACCCCTTTCTCCACCTA 60.179 55.000 0.00 0.00 0.00 3.08
4659 5465 0.035343 GCACCCCTTTCTCCACCTAC 60.035 60.000 0.00 0.00 0.00 3.18
4660 5466 1.657804 CACCCCTTTCTCCACCTACT 58.342 55.000 0.00 0.00 0.00 2.57
4824 5633 1.210967 CTAACCGCCACCTTAATCCCA 59.789 52.381 0.00 0.00 0.00 4.37
4843 5652 0.555769 AAGGAGGCCTTTGTCAACCA 59.444 50.000 6.77 0.00 41.69 3.67
4970 5779 4.003648 CCACCTATCTCAACTTGACCAAC 58.996 47.826 0.00 0.00 0.00 3.77
5000 5809 3.561313 GGGGTCTCATGTTGTTGTGGTAT 60.561 47.826 0.00 0.00 0.00 2.73
5026 5835 2.408241 GCTCGACCTAGGCGACTGT 61.408 63.158 19.93 0.00 43.88 3.55
5094 5903 5.536497 ACCCCTCATGGAGAAAATTACTT 57.464 39.130 0.00 0.00 35.39 2.24
5140 5950 4.399004 TCACAAATTGACCCTGTTTTGG 57.601 40.909 0.00 0.00 34.23 3.28
5144 5954 5.645497 CACAAATTGACCCTGTTTTGGAAAA 59.355 36.000 0.00 0.00 34.23 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 41 1.331399 TGGTGGTGTGTCCTTGTCGA 61.331 55.000 0.00 0.00 37.07 4.20
53 57 2.512485 TGTACACGACGACATTTGGT 57.488 45.000 0.00 0.00 0.00 3.67
62 66 0.457853 CCACCTCCATGTACACGACG 60.458 60.000 0.00 0.00 0.00 5.12
67 71 1.540118 TGCCCCACCTCCATGTACA 60.540 57.895 0.00 0.00 0.00 2.90
116 120 1.376609 ATCAACATTTCCTCGCCGGC 61.377 55.000 19.07 19.07 0.00 6.13
190 194 5.348418 ACAATGATTCTAATTCATCGGCG 57.652 39.130 0.00 0.00 0.00 6.46
194 198 8.315391 TCATCGGACAATGATTCTAATTCATC 57.685 34.615 0.00 0.00 30.76 2.92
195 199 8.727910 CATCATCGGACAATGATTCTAATTCAT 58.272 33.333 0.00 0.00 42.40 2.57
197 201 8.315391 TCATCATCGGACAATGATTCTAATTC 57.685 34.615 0.00 0.00 42.40 2.17
198 202 7.094890 GCTCATCATCGGACAATGATTCTAATT 60.095 37.037 5.01 0.00 42.40 1.40
199 203 6.370994 GCTCATCATCGGACAATGATTCTAAT 59.629 38.462 5.01 0.00 42.40 1.73
200 204 5.698089 GCTCATCATCGGACAATGATTCTAA 59.302 40.000 5.01 0.00 42.40 2.10
201 205 5.011431 AGCTCATCATCGGACAATGATTCTA 59.989 40.000 5.01 0.00 42.40 2.10
202 206 4.063689 GCTCATCATCGGACAATGATTCT 58.936 43.478 5.01 0.00 42.40 2.40
204 208 4.082665 AGCTCATCATCGGACAATGATT 57.917 40.909 5.01 0.00 42.40 2.57
205 209 3.766068 AGCTCATCATCGGACAATGAT 57.234 42.857 5.01 0.00 45.17 2.45
206 210 4.502087 CCTTAGCTCATCATCGGACAATGA 60.502 45.833 0.00 4.61 39.85 2.57
208 212 3.389329 ACCTTAGCTCATCATCGGACAAT 59.611 43.478 0.00 0.00 0.00 2.71
209 213 2.766263 ACCTTAGCTCATCATCGGACAA 59.234 45.455 0.00 0.00 0.00 3.18
210 214 2.388735 ACCTTAGCTCATCATCGGACA 58.611 47.619 0.00 0.00 0.00 4.02
211 215 4.218635 TCATACCTTAGCTCATCATCGGAC 59.781 45.833 0.00 0.00 0.00 4.79
212 216 4.407365 TCATACCTTAGCTCATCATCGGA 58.593 43.478 0.00 0.00 0.00 4.55
213 217 4.790765 TCATACCTTAGCTCATCATCGG 57.209 45.455 0.00 0.00 0.00 4.18
214 218 5.347342 GGATCATACCTTAGCTCATCATCG 58.653 45.833 0.00 0.00 0.00 3.84
215 219 5.347342 CGGATCATACCTTAGCTCATCATC 58.653 45.833 0.00 0.00 0.00 2.92
216 220 4.161189 CCGGATCATACCTTAGCTCATCAT 59.839 45.833 0.00 0.00 0.00 2.45
217 221 3.511540 CCGGATCATACCTTAGCTCATCA 59.488 47.826 0.00 0.00 0.00 3.07
218 222 3.764434 TCCGGATCATACCTTAGCTCATC 59.236 47.826 0.00 0.00 0.00 2.92
219 223 3.779444 TCCGGATCATACCTTAGCTCAT 58.221 45.455 0.00 0.00 0.00 2.90
220 224 3.238788 TCCGGATCATACCTTAGCTCA 57.761 47.619 0.00 0.00 0.00 4.26
229 233 9.355215 CACTACATAAAGTAATCCGGATCATAC 57.645 37.037 19.43 17.17 30.92 2.39
240 244 6.889722 ACCCATGCAACACTACATAAAGTAAT 59.110 34.615 0.00 0.00 30.92 1.89
261 265 2.104451 AGTTTCAAATGCATGCAACCCA 59.896 40.909 26.68 6.57 28.33 4.51
272 276 7.040478 TGTCCTTTGTATCTGGAGTTTCAAATG 60.040 37.037 0.00 0.00 0.00 2.32
283 287 5.066893 CCACATTCATGTCCTTTGTATCTGG 59.933 44.000 0.00 0.00 39.39 3.86
290 294 2.165030 GCTCCCACATTCATGTCCTTTG 59.835 50.000 0.00 0.00 39.39 2.77
293 297 0.107508 CGCTCCCACATTCATGTCCT 60.108 55.000 0.00 0.00 39.39 3.85
298 302 5.132502 TCATATTTTCGCTCCCACATTCAT 58.867 37.500 0.00 0.00 0.00 2.57
299 303 4.522114 TCATATTTTCGCTCCCACATTCA 58.478 39.130 0.00 0.00 0.00 2.57
301 305 4.576463 GTCTCATATTTTCGCTCCCACATT 59.424 41.667 0.00 0.00 0.00 2.71
302 306 4.130118 GTCTCATATTTTCGCTCCCACAT 58.870 43.478 0.00 0.00 0.00 3.21
312 316 5.968387 AATCGGACACGTCTCATATTTTC 57.032 39.130 0.00 0.00 41.85 2.29
320 324 1.859080 GGCATTAATCGGACACGTCTC 59.141 52.381 0.00 0.00 41.85 3.36
324 328 1.931551 CGGGCATTAATCGGACACG 59.068 57.895 0.00 0.00 42.74 4.49
344 348 2.680352 ACACGTCCGAGCCCATCT 60.680 61.111 0.00 0.00 0.00 2.90
345 349 2.202756 GACACGTCCGAGCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
356 360 4.936823 AAACGCTCGCGGACACGT 62.937 61.111 16.18 8.60 44.69 4.49
357 361 4.409588 CAAACGCTCGCGGACACG 62.410 66.667 16.18 7.89 44.69 4.49
358 362 3.000080 CTCAAACGCTCGCGGACAC 62.000 63.158 16.18 0.00 44.69 3.67
378 382 0.310543 TCACGCACAACAAATCTGCC 59.689 50.000 0.00 0.00 0.00 4.85
393 397 4.742167 CCTAGTTGAGCATCTACAATCACG 59.258 45.833 0.00 0.00 43.40 4.35
426 434 2.366533 CATGTGCCATTGAGCTTCTCT 58.633 47.619 0.00 0.00 0.00 3.10
468 479 0.879090 GACAAGTGGGGCTAAAACCG 59.121 55.000 0.00 0.00 0.00 4.44
608 619 0.027586 GATGGGCATCAACGTTACGC 59.972 55.000 4.09 3.68 37.74 4.42
651 662 4.728772 TGGGAAGAAGCTCAAATTCTGAA 58.271 39.130 0.00 0.00 37.10 3.02
890 911 3.049674 CAAAGCGAGGCAGCCGAA 61.050 61.111 5.55 0.00 38.01 4.30
1172 1193 2.170187 ACGTACACCAAAACCACCAGTA 59.830 45.455 0.00 0.00 0.00 2.74
1338 1365 1.153804 GTCGAGCGAGAAAGACCCC 60.154 63.158 0.00 0.00 0.00 4.95
1533 1560 1.528076 TTGCATGTTGCTGTCCCGT 60.528 52.632 0.75 0.00 45.31 5.28
1894 2536 5.562298 AACTGAAAGGGAGTTAGCAGTAA 57.438 39.130 0.00 0.00 39.30 2.24
1899 2541 5.763698 ACTTGTAAACTGAAAGGGAGTTAGC 59.236 40.000 0.00 0.00 39.30 3.09
1900 2542 6.427242 GGACTTGTAAACTGAAAGGGAGTTAG 59.573 42.308 0.00 0.00 39.30 2.34
1901 2543 6.100714 AGGACTTGTAAACTGAAAGGGAGTTA 59.899 38.462 0.00 0.00 39.30 2.24
1902 2544 5.104067 AGGACTTGTAAACTGAAAGGGAGTT 60.104 40.000 0.00 0.00 39.30 3.01
1903 2545 4.412528 AGGACTTGTAAACTGAAAGGGAGT 59.587 41.667 0.00 0.00 39.30 3.85
1904 2546 4.974399 AGGACTTGTAAACTGAAAGGGAG 58.026 43.478 0.00 0.00 39.30 4.30
1905 2547 5.510179 CGTAGGACTTGTAAACTGAAAGGGA 60.510 44.000 0.00 0.00 39.30 4.20
1906 2548 4.689345 CGTAGGACTTGTAAACTGAAAGGG 59.311 45.833 0.00 0.00 39.30 3.95
1907 2549 5.176958 CACGTAGGACTTGTAAACTGAAAGG 59.823 44.000 0.00 0.00 39.30 3.11
1908 2550 5.751990 ACACGTAGGACTTGTAAACTGAAAG 59.248 40.000 0.00 0.00 31.56 2.62
1909 2551 5.663456 ACACGTAGGACTTGTAAACTGAAA 58.337 37.500 0.00 0.00 28.16 2.69
1910 2552 5.266733 ACACGTAGGACTTGTAAACTGAA 57.733 39.130 0.00 0.00 28.16 3.02
1911 2553 4.924305 ACACGTAGGACTTGTAAACTGA 57.076 40.909 0.00 0.00 28.16 3.41
1912 2554 7.307694 TGTATACACGTAGGACTTGTAAACTG 58.692 38.462 0.08 0.00 36.60 3.16
1913 2555 7.452880 TGTATACACGTAGGACTTGTAAACT 57.547 36.000 0.08 0.00 36.60 2.66
1914 2556 9.443283 CTATGTATACACGTAGGACTTGTAAAC 57.557 37.037 7.96 0.00 39.61 2.01
1925 2567 8.867112 AATTGACAACCTATGTATACACGTAG 57.133 34.615 7.96 7.09 44.12 3.51
1926 2568 9.656040 AAAATTGACAACCTATGTATACACGTA 57.344 29.630 7.96 0.00 44.12 3.57
1927 2569 8.556213 AAAATTGACAACCTATGTATACACGT 57.444 30.769 7.96 1.98 44.12 4.49
1933 2575 9.131791 GGGTGATAAAATTGACAACCTATGTAT 57.868 33.333 0.00 0.00 44.12 2.29
1934 2576 8.110271 TGGGTGATAAAATTGACAACCTATGTA 58.890 33.333 0.00 0.00 44.12 2.29
1936 2578 7.403312 TGGGTGATAAAATTGACAACCTATG 57.597 36.000 0.00 0.00 40.35 2.23
1937 2579 8.429237 TTTGGGTGATAAAATTGACAACCTAT 57.571 30.769 0.00 0.00 40.35 2.57
1938 2580 7.841282 TTTGGGTGATAAAATTGACAACCTA 57.159 32.000 0.00 0.00 40.35 3.08
1939 2581 6.739331 TTTGGGTGATAAAATTGACAACCT 57.261 33.333 0.00 0.00 40.35 3.50
1992 2634 9.136323 ACTTCAGATGTTCTATTTTCAAAAGGT 57.864 29.630 0.00 0.00 0.00 3.50
1993 2635 9.971922 AACTTCAGATGTTCTATTTTCAAAAGG 57.028 29.630 0.00 0.00 0.00 3.11
2049 2691 9.451002 TCGTCAATTTGACCAACCTAATATAAA 57.549 29.630 20.87 0.00 44.20 1.40
2050 2692 9.621629 ATCGTCAATTTGACCAACCTAATATAA 57.378 29.630 20.87 0.00 44.20 0.98
2051 2693 9.268268 GATCGTCAATTTGACCAACCTAATATA 57.732 33.333 20.87 0.00 44.20 0.86
2052 2694 7.993183 AGATCGTCAATTTGACCAACCTAATAT 59.007 33.333 20.87 4.18 44.20 1.28
2053 2695 7.335627 AGATCGTCAATTTGACCAACCTAATA 58.664 34.615 20.87 0.16 44.20 0.98
2054 2696 6.180472 AGATCGTCAATTTGACCAACCTAAT 58.820 36.000 20.87 6.17 44.20 1.73
2055 2697 5.556915 AGATCGTCAATTTGACCAACCTAA 58.443 37.500 20.87 2.23 44.20 2.69
2056 2698 5.160607 AGATCGTCAATTTGACCAACCTA 57.839 39.130 20.87 3.68 44.20 3.08
2057 2699 4.021102 AGATCGTCAATTTGACCAACCT 57.979 40.909 20.87 11.55 44.20 3.50
2058 2700 5.175859 TCTAGATCGTCAATTTGACCAACC 58.824 41.667 20.87 9.81 44.20 3.77
2059 2701 5.292101 CCTCTAGATCGTCAATTTGACCAAC 59.708 44.000 20.87 9.60 44.20 3.77
2060 2702 5.046591 ACCTCTAGATCGTCAATTTGACCAA 60.047 40.000 20.87 11.64 44.20 3.67
2061 2703 4.466370 ACCTCTAGATCGTCAATTTGACCA 59.534 41.667 20.87 11.17 44.20 4.02
2062 2704 5.012328 ACCTCTAGATCGTCAATTTGACC 57.988 43.478 20.87 9.44 44.20 4.02
2063 2705 5.681982 CGTACCTCTAGATCGTCAATTTGAC 59.318 44.000 17.76 17.76 43.65 3.18
2064 2706 5.732528 GCGTACCTCTAGATCGTCAATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
2065 2707 4.441415 GCGTACCTCTAGATCGTCAATTTG 59.559 45.833 0.00 0.00 0.00 2.32
2066 2708 4.608951 GCGTACCTCTAGATCGTCAATTT 58.391 43.478 0.00 0.00 0.00 1.82
2067 2709 3.303857 CGCGTACCTCTAGATCGTCAATT 60.304 47.826 0.00 0.00 0.00 2.32
2068 2710 2.223611 CGCGTACCTCTAGATCGTCAAT 59.776 50.000 0.00 0.00 0.00 2.57
2069 2711 1.596260 CGCGTACCTCTAGATCGTCAA 59.404 52.381 0.00 0.00 0.00 3.18
2070 2712 1.215244 CGCGTACCTCTAGATCGTCA 58.785 55.000 0.00 0.00 0.00 4.35
2071 2713 0.110733 GCGCGTACCTCTAGATCGTC 60.111 60.000 8.43 0.00 0.00 4.20
2072 2714 1.829349 CGCGCGTACCTCTAGATCGT 61.829 60.000 24.19 0.00 0.00 3.73
2073 2715 1.154635 CGCGCGTACCTCTAGATCG 60.155 63.158 24.19 0.00 0.00 3.69
2074 2716 1.440684 GCGCGCGTACCTCTAGATC 60.441 63.158 32.35 5.70 0.00 2.75
2075 2717 2.638154 GCGCGCGTACCTCTAGAT 59.362 61.111 32.35 0.00 0.00 1.98
2076 2718 3.933498 CGCGCGCGTACCTCTAGA 61.933 66.667 42.49 0.00 34.35 2.43
2088 2730 4.147322 CAGTTTACAGGGCGCGCG 62.147 66.667 28.44 28.44 0.00 6.86
2089 2731 2.740714 CTCAGTTTACAGGGCGCGC 61.741 63.158 25.94 25.94 0.00 6.86
2090 2732 1.078759 CTCTCAGTTTACAGGGCGCG 61.079 60.000 0.00 0.00 0.00 6.86
2091 2733 0.246635 TCTCTCAGTTTACAGGGCGC 59.753 55.000 0.00 0.00 0.00 6.53
2092 2734 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
2093 2735 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
2094 2736 2.763448 CCCTCTCTCTCAGTTTACAGGG 59.237 54.545 0.00 0.00 33.59 4.45
2095 2737 2.763448 CCCCTCTCTCTCAGTTTACAGG 59.237 54.545 0.00 0.00 0.00 4.00
2096 2738 2.763448 CCCCCTCTCTCTCAGTTTACAG 59.237 54.545 0.00 0.00 0.00 2.74
2097 2739 2.111972 ACCCCCTCTCTCTCAGTTTACA 59.888 50.000 0.00 0.00 0.00 2.41
2098 2740 2.822697 ACCCCCTCTCTCTCAGTTTAC 58.177 52.381 0.00 0.00 0.00 2.01
2099 2741 3.335786 TGTACCCCCTCTCTCTCAGTTTA 59.664 47.826 0.00 0.00 0.00 2.01
2100 2742 2.111972 TGTACCCCCTCTCTCTCAGTTT 59.888 50.000 0.00 0.00 0.00 2.66
2101 2743 1.717077 TGTACCCCCTCTCTCTCAGTT 59.283 52.381 0.00 0.00 0.00 3.16
2102 2744 1.383963 TGTACCCCCTCTCTCTCAGT 58.616 55.000 0.00 0.00 0.00 3.41
2103 2745 2.291930 ACTTGTACCCCCTCTCTCTCAG 60.292 54.545 0.00 0.00 0.00 3.35
2104 2746 1.717077 ACTTGTACCCCCTCTCTCTCA 59.283 52.381 0.00 0.00 0.00 3.27
2105 2747 2.535836 ACTTGTACCCCCTCTCTCTC 57.464 55.000 0.00 0.00 0.00 3.20
2106 2748 4.548669 GAATACTTGTACCCCCTCTCTCT 58.451 47.826 0.00 0.00 0.00 3.10
2107 2749 3.318557 CGAATACTTGTACCCCCTCTCTC 59.681 52.174 0.00 0.00 0.00 3.20
2108 2750 3.297736 CGAATACTTGTACCCCCTCTCT 58.702 50.000 0.00 0.00 0.00 3.10
2109 2751 3.029570 ACGAATACTTGTACCCCCTCTC 58.970 50.000 0.00 0.00 0.00 3.20
2110 2752 3.111741 ACGAATACTTGTACCCCCTCT 57.888 47.619 0.00 0.00 0.00 3.69
2111 2753 3.736126 CGAACGAATACTTGTACCCCCTC 60.736 52.174 0.00 0.00 0.00 4.30
2112 2754 2.167075 CGAACGAATACTTGTACCCCCT 59.833 50.000 0.00 0.00 0.00 4.79
2113 2755 2.543641 CGAACGAATACTTGTACCCCC 58.456 52.381 0.00 0.00 0.00 5.40
2114 2756 2.166254 TCCGAACGAATACTTGTACCCC 59.834 50.000 0.00 0.00 0.00 4.95
2115 2757 3.508744 TCCGAACGAATACTTGTACCC 57.491 47.619 0.00 0.00 0.00 3.69
2116 2758 6.413018 AATTTCCGAACGAATACTTGTACC 57.587 37.500 0.00 0.00 0.00 3.34
2200 2843 1.153686 GGGTCGACGGCCTTAACTC 60.154 63.158 19.55 0.00 0.00 3.01
2214 2857 1.629043 TGTACACTGGAGACTGGGTC 58.371 55.000 0.00 0.00 43.05 4.46
2318 3100 6.433404 AGAAGCAAACAATGATCTTGACAGAT 59.567 34.615 10.61 0.00 43.03 2.90
2319 3101 5.766670 AGAAGCAAACAATGATCTTGACAGA 59.233 36.000 10.61 0.00 0.00 3.41
2402 3184 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2403 3185 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2404 3186 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2405 3187 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2406 3188 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2407 3189 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2408 3190 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2409 3191 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2410 3192 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
2411 3193 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
2422 3204 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2423 3205 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
2424 3206 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2425 3207 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2426 3208 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2427 3209 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2428 3210 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2429 3211 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2430 3212 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2431 3213 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2432 3214 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2433 3215 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2434 3216 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2435 3217 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
2436 3218 7.328737 GTCGTATGTAGTCACTTGTTGAAATCT 59.671 37.037 0.00 0.00 35.39 2.40
2437 3219 7.445836 GTCGTATGTAGTCACTTGTTGAAATC 58.554 38.462 0.00 0.00 35.39 2.17
2438 3220 6.089016 CGTCGTATGTAGTCACTTGTTGAAAT 59.911 38.462 0.00 0.00 35.39 2.17
2439 3221 5.400188 CGTCGTATGTAGTCACTTGTTGAAA 59.600 40.000 0.00 0.00 35.39 2.69
2440 3222 4.913345 CGTCGTATGTAGTCACTTGTTGAA 59.087 41.667 0.00 0.00 35.39 2.69
2441 3223 4.469552 CGTCGTATGTAGTCACTTGTTGA 58.530 43.478 0.00 0.00 0.00 3.18
2442 3224 3.059044 GCGTCGTATGTAGTCACTTGTTG 59.941 47.826 0.00 0.00 0.00 3.33
2443 3225 3.240069 GCGTCGTATGTAGTCACTTGTT 58.760 45.455 0.00 0.00 0.00 2.83
2444 3226 2.227149 TGCGTCGTATGTAGTCACTTGT 59.773 45.455 0.00 0.00 0.00 3.16
2445 3227 2.858839 TGCGTCGTATGTAGTCACTTG 58.141 47.619 0.00 0.00 0.00 3.16
2446 3228 3.564235 TTGCGTCGTATGTAGTCACTT 57.436 42.857 0.00 0.00 0.00 3.16
2447 3229 3.564235 TTTGCGTCGTATGTAGTCACT 57.436 42.857 0.00 0.00 0.00 3.41
2448 3230 4.325204 TCATTTTGCGTCGTATGTAGTCAC 59.675 41.667 0.00 0.00 0.00 3.67
2449 3231 4.487019 TCATTTTGCGTCGTATGTAGTCA 58.513 39.130 0.00 0.00 0.00 3.41
2450 3232 4.561606 ACTCATTTTGCGTCGTATGTAGTC 59.438 41.667 0.00 0.00 0.00 2.59
2451 3233 4.326278 CACTCATTTTGCGTCGTATGTAGT 59.674 41.667 0.00 0.00 0.00 2.73
2452 3234 4.561213 TCACTCATTTTGCGTCGTATGTAG 59.439 41.667 0.00 0.00 0.00 2.74
2453 3235 4.487019 TCACTCATTTTGCGTCGTATGTA 58.513 39.130 0.00 0.00 0.00 2.29
2454 3236 3.322369 TCACTCATTTTGCGTCGTATGT 58.678 40.909 0.00 0.00 0.00 2.29
2455 3237 3.989705 TCACTCATTTTGCGTCGTATG 57.010 42.857 0.00 0.00 0.00 2.39
2456 3238 4.870426 AGATTCACTCATTTTGCGTCGTAT 59.130 37.500 0.00 0.00 0.00 3.06
2457 3239 4.242475 AGATTCACTCATTTTGCGTCGTA 58.758 39.130 0.00 0.00 0.00 3.43
2458 3240 3.067106 AGATTCACTCATTTTGCGTCGT 58.933 40.909 0.00 0.00 0.00 4.34
2459 3241 3.729526 AGATTCACTCATTTTGCGTCG 57.270 42.857 0.00 0.00 0.00 5.12
2460 3242 5.120830 AGTGTAGATTCACTCATTTTGCGTC 59.879 40.000 0.00 0.00 44.07 5.19
2461 3243 4.997395 AGTGTAGATTCACTCATTTTGCGT 59.003 37.500 0.00 0.00 44.07 5.24
2462 3244 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
2463 3245 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
2500 3282 7.776030 TCAAATAAACCCAACATACGGATGTAT 59.224 33.333 15.10 0.00 45.93 2.29
2501 3283 7.110810 TCAAATAAACCCAACATACGGATGTA 58.889 34.615 15.10 0.00 45.93 2.29
2503 3285 6.443934 TCAAATAAACCCAACATACGGATG 57.556 37.500 5.94 5.94 39.16 3.51
2504 3286 7.469537 TTTCAAATAAACCCAACATACGGAT 57.530 32.000 0.00 0.00 0.00 4.18
2505 3287 6.896021 TTTCAAATAAACCCAACATACGGA 57.104 33.333 0.00 0.00 0.00 4.69
2506 3288 6.035542 GCATTTCAAATAAACCCAACATACGG 59.964 38.462 0.00 0.00 0.00 4.02
2507 3289 6.035542 GGCATTTCAAATAAACCCAACATACG 59.964 38.462 0.00 0.00 0.00 3.06
2508 3290 7.102993 AGGCATTTCAAATAAACCCAACATAC 58.897 34.615 0.00 0.00 0.00 2.39
2509 3291 7.251321 AGGCATTTCAAATAAACCCAACATA 57.749 32.000 0.00 0.00 0.00 2.29
2510 3292 6.125589 AGGCATTTCAAATAAACCCAACAT 57.874 33.333 0.00 0.00 0.00 2.71
2511 3293 5.559148 AGGCATTTCAAATAAACCCAACA 57.441 34.783 0.00 0.00 0.00 3.33
2512 3294 6.930731 TCTAGGCATTTCAAATAAACCCAAC 58.069 36.000 0.00 0.00 0.00 3.77
2513 3295 7.546250 TTCTAGGCATTTCAAATAAACCCAA 57.454 32.000 0.00 0.00 0.00 4.12
2514 3296 7.453126 TCTTTCTAGGCATTTCAAATAAACCCA 59.547 33.333 0.00 0.00 0.00 4.51
2515 3297 7.759886 GTCTTTCTAGGCATTTCAAATAAACCC 59.240 37.037 0.00 0.00 0.00 4.11
2516 3298 8.303876 TGTCTTTCTAGGCATTTCAAATAAACC 58.696 33.333 0.00 0.00 29.10 3.27
2517 3299 9.691362 TTGTCTTTCTAGGCATTTCAAATAAAC 57.309 29.630 0.00 0.00 35.56 2.01
2518 3300 9.912634 CTTGTCTTTCTAGGCATTTCAAATAAA 57.087 29.630 0.00 0.00 35.56 1.40
2519 3301 9.077885 ACTTGTCTTTCTAGGCATTTCAAATAA 57.922 29.630 0.00 0.00 35.56 1.40
2520 3302 8.635765 ACTTGTCTTTCTAGGCATTTCAAATA 57.364 30.769 0.00 0.00 35.56 1.40
2521 3303 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
2522 3304 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
2523 3305 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2524 3306 8.514594 CAAATACTTGTCTTTCTAGGCATTTCA 58.485 33.333 0.00 0.00 35.56 2.69
2525 3307 7.970614 CCAAATACTTGTCTTTCTAGGCATTTC 59.029 37.037 0.00 0.00 35.56 2.17
2526 3308 7.093771 CCCAAATACTTGTCTTTCTAGGCATTT 60.094 37.037 0.00 0.00 35.56 2.32
2527 3309 6.378280 CCCAAATACTTGTCTTTCTAGGCATT 59.622 38.462 0.00 0.00 35.56 3.56
2528 3310 5.888161 CCCAAATACTTGTCTTTCTAGGCAT 59.112 40.000 0.00 0.00 35.56 4.40
2529 3311 5.013704 TCCCAAATACTTGTCTTTCTAGGCA 59.986 40.000 0.00 0.00 33.22 4.75
2530 3312 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
2531 3313 6.092259 CGTTCCCAAATACTTGTCTTTCTAGG 59.908 42.308 0.00 0.00 0.00 3.02
2532 3314 6.092259 CCGTTCCCAAATACTTGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
2533 3315 5.935789 CCGTTCCCAAATACTTGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
2534 3316 4.760204 CCGTTCCCAAATACTTGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
2535 3317 4.758165 TCCGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
2536 3318 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
2537 3319 4.324267 CTCCGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2538 3320 3.307480 CCTCCGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2539 3321 3.007635 CCTCCGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
2540 3322 2.290705 CCCTCCGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
2541 3323 2.026636 TCCCTCCGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
2542 3324 2.238898 CTCCCTCCGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
2543 3325 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
2544 3326 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2545 3327 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2546 3328 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2547 3329 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2548 3330 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
2549 3331 0.635009 ATCTACTCCCTCCGTTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
2550 3332 2.671896 TATCTACTCCCTCCGTTCCC 57.328 55.000 0.00 0.00 0.00 3.97
2551 3333 3.830121 TCTTATCTACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
2552 3334 5.848833 TTTCTTATCTACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
2553 3335 5.128991 CCTTTTCTTATCTACTCCCTCCGTT 59.871 44.000 0.00 0.00 0.00 4.44
2554 3336 4.650131 CCTTTTCTTATCTACTCCCTCCGT 59.350 45.833 0.00 0.00 0.00 4.69
2555 3337 4.894114 TCCTTTTCTTATCTACTCCCTCCG 59.106 45.833 0.00 0.00 0.00 4.63
2556 3338 6.555360 TGATCCTTTTCTTATCTACTCCCTCC 59.445 42.308 0.00 0.00 0.00 4.30
2557 3339 7.289084 AGTGATCCTTTTCTTATCTACTCCCTC 59.711 40.741 0.00 0.00 0.00 4.30
2558 3340 7.136203 AGTGATCCTTTTCTTATCTACTCCCT 58.864 38.462 0.00 0.00 0.00 4.20
2559 3341 7.368198 AGTGATCCTTTTCTTATCTACTCCC 57.632 40.000 0.00 0.00 0.00 4.30
2560 3342 7.142680 CGAGTGATCCTTTTCTTATCTACTCC 58.857 42.308 0.00 0.00 31.43 3.85
2561 3343 7.708998 ACGAGTGATCCTTTTCTTATCTACTC 58.291 38.462 0.00 0.00 31.60 2.59
2562 3344 7.648039 ACGAGTGATCCTTTTCTTATCTACT 57.352 36.000 0.00 0.00 0.00 2.57
2563 3345 8.404000 TGTACGAGTGATCCTTTTCTTATCTAC 58.596 37.037 0.00 0.00 0.00 2.59
2579 3364 5.063564 CGCATATAGCTAGATGTACGAGTGA 59.936 44.000 25.08 0.00 42.61 3.41
2706 3492 7.020602 CACACAAGTGCGTTCAAATCATATTA 58.979 34.615 0.00 0.00 39.21 0.98
2900 3686 9.406828 GGTTAAACTTTGATCACAGATTTAACC 57.593 33.333 31.37 31.37 42.89 2.85
2956 3746 9.662947 CATCCTAGTGATCTTTATCATTGCATA 57.337 33.333 0.00 0.00 43.87 3.14
3071 3861 3.835978 TCCGATGAAGTCCTCCTTTACAA 59.164 43.478 0.00 0.00 32.03 2.41
3141 3931 9.745880 TCCTTATAGCTTCTAAACAGTAATTCG 57.254 33.333 0.00 0.00 0.00 3.34
3169 3959 5.360999 GGCTTTCCTATTCTAAACTGCCAAT 59.639 40.000 0.00 0.00 36.91 3.16
3201 3991 4.973174 AAAAAGCATGGCCCCTCA 57.027 50.000 0.00 0.00 0.00 3.86
3249 4039 5.765182 GCTATATCTTTGGCACCTAACATGT 59.235 40.000 0.00 0.00 0.00 3.21
3251 4041 5.940617 TGCTATATCTTTGGCACCTAACAT 58.059 37.500 0.00 0.00 0.00 2.71
3253 4043 6.055588 TCTTGCTATATCTTTGGCACCTAAC 58.944 40.000 0.00 0.00 34.30 2.34
3423 4216 8.956426 TGGAAGAATGGTTTTGCTTAATACTAG 58.044 33.333 0.00 0.00 0.00 2.57
3527 4323 9.118300 GGTCAGTTAGCTACTAGATGTAAACTA 57.882 37.037 0.00 0.00 34.56 2.24
3535 4331 5.720041 TGGTTTGGTCAGTTAGCTACTAGAT 59.280 40.000 0.00 0.00 34.56 1.98
3536 4332 5.047519 GTGGTTTGGTCAGTTAGCTACTAGA 60.048 44.000 0.00 0.00 34.56 2.43
3559 4361 1.501337 CTGCGCGATACCATGCATGT 61.501 55.000 24.58 15.01 36.64 3.21
3627 4429 2.604686 AGAGACCTGCGCCTCCAA 60.605 61.111 4.18 0.00 0.00 3.53
3954 4756 5.867903 ACAAGGAACAAATGAAATCCACA 57.132 34.783 0.00 0.00 34.30 4.17
4006 4808 2.737252 GCTTTTGTCCGAGACGAGAAAT 59.263 45.455 0.00 0.00 34.95 2.17
4066 4868 0.834687 AGGCCTGGTTCCAGTCGTTA 60.835 55.000 3.11 0.00 32.56 3.18
4067 4869 1.705997 AAGGCCTGGTTCCAGTCGTT 61.706 55.000 5.69 9.55 32.56 3.85
4159 4961 2.088104 TCCTTCCTCGTCCTGCATAT 57.912 50.000 0.00 0.00 0.00 1.78
4206 5010 5.318630 TGTCTATATGACCGTATGGCTACA 58.681 41.667 0.00 0.00 44.75 2.74
4227 5031 4.850386 ACCTCTAACCTAACCTTTGGATGT 59.150 41.667 0.00 0.00 0.00 3.06
4277 5082 1.663695 CCCGTCCGACTATTGCAAAT 58.336 50.000 1.71 0.00 0.00 2.32
4324 5129 6.532826 AGACTTCTTTCTGCTCTTGATCTTT 58.467 36.000 0.00 0.00 0.00 2.52
4335 5141 1.801178 CCACGGAAGACTTCTTTCTGC 59.199 52.381 14.72 0.00 36.11 4.26
4336 5142 2.037251 TCCCACGGAAGACTTCTTTCTG 59.963 50.000 14.72 5.37 36.11 3.02
4363 5169 6.095440 CCAGGAATCCGATACAAACATTTCTT 59.905 38.462 0.00 0.00 0.00 2.52
4383 5189 1.651737 TTGGTTCCGATCTTCCAGGA 58.348 50.000 0.00 0.00 0.00 3.86
4405 5211 0.456312 GCTATAATCCCTCGTCGGCG 60.456 60.000 1.15 1.15 39.92 6.46
4406 5212 0.108756 GGCTATAATCCCTCGTCGGC 60.109 60.000 0.00 0.00 0.00 5.54
4425 5231 5.010282 GGAGGTTGGTAATGCCCTTATATG 58.990 45.833 0.00 0.00 36.04 1.78
4437 5243 1.377229 CCTTGGCGGAGGTTGGTAA 59.623 57.895 0.00 0.00 33.16 2.85
4457 5263 6.127479 GGAATGAGCTCCGACATATCTTCTAT 60.127 42.308 12.15 0.00 0.00 1.98
4491 5297 7.730364 ATGTCGTTTTCATATCTACCAATCC 57.270 36.000 0.00 0.00 0.00 3.01
4504 5310 8.726650 CATTGAGATTTACAATGTCGTTTTCA 57.273 30.769 0.00 0.00 45.16 2.69
4537 5343 6.049955 TGCATTATGCCTACCTATCCTTAC 57.950 41.667 15.06 0.00 44.23 2.34
4572 5378 2.357760 GGTTCACGCCGCCTAACA 60.358 61.111 0.00 0.00 0.00 2.41
4579 5385 1.444836 TTTTATCCAGGTTCACGCCG 58.555 50.000 0.00 0.00 0.00 6.46
4658 5464 5.171476 CAGTCTGATGTTTATCGTGGAAGT 58.829 41.667 0.00 0.00 36.04 3.01
4659 5465 5.171476 ACAGTCTGATGTTTATCGTGGAAG 58.829 41.667 6.91 0.00 36.04 3.46
4660 5466 5.147330 ACAGTCTGATGTTTATCGTGGAA 57.853 39.130 6.91 0.00 36.04 3.53
4956 5765 1.512926 CCTCCGTTGGTCAAGTTGAG 58.487 55.000 5.62 0.00 0.00 3.02
5000 5809 0.465097 CCTAGGTCGAGCTAACGGGA 60.465 60.000 23.45 4.16 0.00 5.14
5026 5835 4.011517 GGGTTTCGACCCCAGCGA 62.012 66.667 13.39 0.00 44.18 4.93
5094 5903 4.817318 AGTTTGCCAAAAAGGTCAGAAA 57.183 36.364 0.00 0.00 40.61 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.