>input_sequence_23389
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------------------------------------------------------------ATGGATGATGTGTGGTGCAG
CCTCGACATGGCCGCCGACATCGCCGGCCTCCACAGCGCCCTCGCCGACCCATTCTGGCCCGCCGACCTTGACCTCATGG
TTTCGACCCACGAGGTGAGCAATGTTAATTCTTGACCCTGCTTCCTTGCAAATCGAAGCGTCTGTAAATTAATACTGGTG
GTTTTGGTGTACGTGTAGGTGGAGGGTATGGCGGACATGGACGCGAGCGGCTTCTTCGTAGGAGGAGGGGATGACCGCTT
CATGCTGCCGTCGTCGACGACGTCGTCACTCTCGTCGAAGCGATCACTCTCCCTCGACAGCGGCGGCTC------CTCAG
GCTCGGGGTCTTTCTCGCTCGACCTCGCGGACGCCTCGCGGTACCAGGCGCCGGCGCTGCCGGTGCCGCACAACCCCTTG
GCGGGCGCCGTCGACCACGACGACGAGGCGATCATGCGGGCTATGATGGCGGTCATGTCTTCGTCCTCTGCCTCCCCGTC
CTCCTCGGCATCCTCCCATCCGCAGCCCTTCCGCCGGGAACGGGACAGCAACATGCAACAACAGTCAGCAGCCATGGCGC
CGCAGCTGCGTGGAGGACGAAGTGGCCACGTGATGGTGAAGAGCAGCCTCTCCATGTCGCCGGAGAGAAGCAGCAGCGGC
GGCCGGGGACAGCAGCAGGAGGATCCGACGAGGGCCGCGAGCGGCAACACCGGCCAGCTCTACCACATGATGTCAGAGAG
GAAGCGACGGGAGAAGCTCAACGACAGCTTCCACACGCTGAGGTCGCTCCTTCCCCCCTGCTCAAAGGTATAAACATCAC
CATCATATCACATCCACTCATTCACAAATCT-------------------------------------------------
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------TAAGCAAGCATCCAACACCACCGGCTACAACATTAATTACTTCCTTTCGTTACTGCTAACTCCCTTTCAGTTTA
CAAGTCCTACGTGTATACATAGGTTGTCAATTTTATCACCCAAATATAAACTATATAATACAGAAATTACTATACCTTTT
GAAAATAGAACATCTGAAGTTTATATTAATATATTTTTTATAATATATGATTTATATTAGGTTGGTCAAATTGACGATCT
AGAGGTACGCGCGCGCCCTGTAAACTGAGAGAGAGGGGGTACAAGTATT-CGTTCGGAAATTTAAACTAAAAACACGTCA
GTTATTTCCAAACGGAGGGAGTACTAAAGGTATACTACCGGTGAGTTAAGGCCGTCGACCCAGTC---------------
--------------------------------------------------------------------------------
-------------------TCCAGTGTACAAATATGCTCCTCTGTTTTATTTTCAAGGATGATGATAGATCCTCTCTGTT
TGCTGA-------------------------AAAGTAAGTCTCGGTACTTCCCGTCCCGATCTGTCAAGATCATTGTTTG
CTTCTTTTAATCACTAGACAATGACATTGACAAAGGAAGGTGATCAGAAGGACCACTAGGTTATACTCCCTCCGTTCCTA
AATACTTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGACGCAAAATGAGTGAATCTACACTTTAAAATATGTCTA
CATACATCCGTATGTTGGGTTTATTTGAAATGCCTAGAAAGACAAGTATTTGGGAACGGAGGGAGTAGATAAGAA---AA
GGATCACTCGTACATCTAGCTATATGCGTAGTCAAGCTGGAAAGGAACAAACATGGAAGCTTCAAAAGAAACTAGACTTT
CTGAATAGATGCTACTTTAGCTTCCCTCCTTA-TTTTTTTTTCCATAGTAGTAATATGATTTGAACGCACTTGTGTGGGA
ACAGTAGCATGCAAAAGGCTTATTGGTCCTGTAGTATTTTGTGTCCAACCGTGACCATAAATTTAACTAACTAAATATAA
GTTTTATGTATTAAAAATATTTGAAACTTCTTTCGAATACGAATCCAATGATGTAAATTTTGTGGTGTACAATTTATATT
TTGATGGTTAAATCTGTG----ATCAAAGTTTAACCAAAAATACACCGAGGAGGACAAATGGAATTATGCAATGATAAAG
ATCACTAGGATGCTTTAAATATAAGAGAAAGATATGTTATCTTTAACTTTTAGGACTTCAACAATGATTGTATATTTCAC
TACAGTGAAGCCATGCCAATTTGTAAAGGAGGACTTCATCGGAAATCTAGCGTACTGTCGGGTCAAGAGTTCTTGTTTAC
TCCCTAAAAACGAATTACTGTTTAGAAGCTATAAGGACATTGGCAGTTTAGAATAGGAAAGCCACCGGAATGAGGGGCCA
TGCTTTTTTCAGTGGCCCACAGATAGAATAATTGACAGACATGTTAGGTGCCAAAGATATAGCAAGAGAATAGCGGCAAA
AGACAAATATATAC-TCCAAACAAAAAAGCACATCATTTCACTACTTTGTACGAC--TAATTGGAGTGGTTGCTAGGAAA
GAGCAACCAGTTGTCGCCATTAGGCAGGCAAAACCGTCCTTGTCAACCGTGTAAACTAGTATTAAGC--AAAACCAT-TC
TTCCAGCAAAATCATGTACATAACCTAGAGTCAGAGGCCCACTTGCCATCAAGATCTTTAATCATGAGGAAGCTTTAATT
TTTAGTTTACATCTAGTAG------CTAACTGACCAAACCACATGCATGGTATCGCGCAGAAGGACAAGACAACGGTGCT
GACCAAGGCGGCGGGGTACCTAAAGACGTTGGAGGCGCAGGTCTCTGAGCTGGAGGAGAAGAACAATAAGCTGGAGAAGC
ACATCCCGACCTACGACTGCGAGGAGGACGTGCCGCACCAGCAGAGGCGGCAGAGGGCCAAGGTCCAGATCACCAAGGCG
GCGTCGGACGAGGTGGTGAACCTGACGGTGATGGTGATGGTGGAGTGTGACGTGGTGGAGCTGGTGCTCCGCATCCTGGA
GTGCCTCCGGTGGATGGAGCAGGTCAGCGTCATGTCCGTCGACGCCGACACCTACTCCCCGCAGGTGTTGCTCAAGGCCA
TAGCCAGCATCAAGCTCCGGATCGTGGTACGTCGGTGTGGATTTCATTTGTTCCTTGTTTCCTCTTTAATTCATTCATGA
TGACTGCATTTCTCGTCTCGGACAAAAGCAACTTCATCTTACTGGTGGTATGTACGTATATGCAGGATAACGACTGGAAC
CAGGCCTTGTTCCACGAGGCCATGACCAAGGCTGTTAACGATGCAACCGCGTCTCGTCCTCCGCTCGTGCTCACCGCGTA
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>chr3B_1_TraesCS3B01G236900
TCCGACGACTC---CTTGACAGGCGGCTCCACCTCGAGCTTCGACAAGGACACACCACCAAATGTCGTCGTGTACATGGA
GGTGGGGCACAACGACGCCGGCGACCGCAAGGGGATGGGGCCGGCGAGGAAATGTTGATTTCCTTCGCCCTTCCCCGTTT
TAGCTATGTTTTGTAGTATGAATTTGCGCTGTCCGCCGATGAATTAGAATCATTGTCCGATGATGAGCTAAGGTATGATC
CGGATTACTTTATGTAGTGTTGCATGGGTTGCATGCATTTGAAACTCCAGATACAAAGGACATGAATGTGGGAGCGAAAA
TATGAGACGTGTCCGATTAATGCCCGCAGATGGGCTCGGACGTGTCCGCGAGCGTTTGAGGGGCAGATTTGTTGTGCGTG
ATTGTAGATGCT----CAACTAGGAGGCGCGCAAGAGAAGCTCAATGGCACATGGA---GTCAATGACGCATGGGCATCG
GTTTTAGCCCCACTTGTCACGGTCGCACCGAAACCTGGCCGTTTCCGGCAGTAACCAGCGGCAAAAACAACCGCACTAGC
CCGAAAAAAAAAGAAAAAAGAAAATACCGTACTCGGCCGAAGAGAGGCACGTACGTGTGCGTAACGTTGATGCCCATCCC
GTGGATATGTCTGCCTGCTGCTT--CAGAATTTGAGCTTCTTCCCAGCAGCTTCGCCCT-GCTCGCGTGCATCCAACCCA
CGACTTTGACCGCGCGAGCGCGACTGTTTCTATTCAACCCAGTTCGCTGCTTGCGTGCAAACCAAACGACCCACCAACTC
CTTCCTTCCTTCCTCCCTCTAAAAAAG-GAAAAGAAAATAAAACTCCTTCCTTCCTTCGTCCTCATGCCCCGCCCCGCCC
GGCGCTGCCTTGCA------TATATAGCAGTTCGGCTGCCTCGCTTTGCCTCCCTGCTATACTTCTCTCTACCAGCTTAC
TCATCGCTCCAGATCAATCATTGGCTGGCTCCATTAACTAGTTACACTACTTGCTGAGGGATGGATGATGTGTGGTGCAG
CCTCGACATGGCCGCCGACATCGCCGGCCTCCACAGCGCCCTCGCCGACCCATTCTGGCCCGCCGACCTTGACCTCATGG
TTTCGACCCACGAGGTGAGCAATGTTAATTCTTGACCCTGCTTCCTTGCAAATCGAAGCGTCTGTAAATTAATACTGGTG
GTTTTGGTGTACGTGTAGGTGGAGGGTATGGCGGACATGGACGCGAGCGGCTTCTTCGTAGGAGGAGGGGATGACCGCTT
CATGCTGCCGTCGTCGACGACGTCGTCACTCTCGTCGAAGCGATCACTCTCCCTCGACAGCGGCGGCTC------CTCAG
GCTCGGGGTCTTTCTCGCTCGACCTCGCGGACGCCTCGCGGTACCAGGCGCCGGCGCTGCCGGTGCCGCACAACCCCTTG
GCGGGCGCCGTCGACCACGACGACGAGGCGATCATGCGGGCTATGATGGCGGTCATGTCTTCGTCCTCTGCCTCCCCGTC
CTCCTCGGCATCCTCCCATCCGCAGCCCTTCCGCCGGGAACGGGACAGCAACATGCAACAACAGTCAGCAGCCATGGCGC
CGCAGCTGCGTGGAGGACGAAGTGGCCACGTGATGGTGAAGAGCAGCCTCTCCATGTCGCCGGAGAGAAGCAGCAGCGGC
GGCCGGGGACAGCAGCAGGAGGATCCGACGAGGGCCGCGAGCGGCAACACCGGCCAGCTCTACCACATGATGTCAGAGAG
GAAGCGACGGGAGAAGCTCAACGACAGCTTCCACACGCTGAGGTCGCTCCTTCCCCCCTGCTCAAAGGTATAAACATCAC
CATCATATCACATCCACTCATTCACAAATCT-------------------------------------------------
--------------------------------------------------------------------------------
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------TAAGCAAGCATCCAACACCACCGGCTACAACATTAATTACTTCCTTTCGTTACTGCTAACTCCCTTTCAGTTTA
CAAGTCCTACGTGTATACATAGGTTGTCAATTTTATCACCCAAATATAAACTATATAATACAGAAATTACTATACCTTTT
GAAAATAGAACATCTGAAGTTTATATTAATATATTTTTTATAATATATGATTTATATTAGGTTGGTCAAATTGACGATCT
AGAGGTACGCGCGCGCCCTGTAAACTGAGAGAGAGGGGGTACAAGTATT-CGTTCGGAAATTTAAACTAAAAACACGTCA
GTTATTTCCAAACGGAGGGAGTACTAAAGGTATACTACCGGTGAGTTAAGGCCGTCGACCCAGTC---------------
--------------------------------------------------------------------------------
-------------------TCCAGTGTACAAATATGCTCCTCTGTTTTATTTTCAAGGATGATGATAGATCCTCTCTGTT
TGCTGA-------------------------AAAGTAAGTCTCGGTACTTCCCGTCCCGATCTGTCAAGATCATTGTTTG
CTTCTTTTAATCACTAGACAATGACATTGACAAAGGAAGGTGATCAGAAGGACCACTAGGTTATACTCCCTCCGTTCCTA
AATACTTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGACGCAAAATGAGTGAATCTACACTTTAAAATATGTCTA
CATACATCCGTATGTTGGGTTTATTTGAAATGCCTAGAAAGACAAGTATTTGGGAACGGAGGGAGTAGATAAGAA---AA
GGATCACTCGTACATCTAGCTATATGCGTAGTCAAGCTGGAAAGGAACAAACATGGAAGCTTCAAAAGAAACTAGACTTT
CTGAATAGATGCTACTTTAGCTTCCCTCCTTA-TTTTTTTTTCCATAGTAGTAATATGATTTGAACGCACTTGTGTGGGA
ACAGTAGCATGCAAAAGGCTTATTGGTCCTGTAGTATTTTGTGTCCAACCGTGACCATAAATTTAACTAACTAAATATAA
GTTTTATGTATTAAAAATATTTGAAACTTCTTTCGAATACGAATCCAATGATGTAAATTTTGTGGTGTACAATTTATATT
TTGATGGTTAAATCTGTG----ATCAAAGTTTAACCAAAAATACACCGAGGAGGACAAATGGAATTATGCAATGATAAAG
ATCACTAGGATGCTTTAAATATAAGAGAAAGATATGTTATCTTTAACTTTTAGGACTTCAACAATGATTGTATATTTCAC
TACAGTGAAGCCATGCCAATTTGTAAAGGAGGACTTCATCGGAAATCTAGCGTACTGTCGGGTCAAGAGTTCTTGTTTAC
TCCCTAAAAACGAATTACTGTTTAGAAGCTATAAGGACATTGGCAGTTTAGAATAGGAAAGCCACCGGAATGAGGGGCCA
TGCTTTTTTCAGTGGCCCACAGATAGAATAATTGACAGACATGTTAGGTGCCAAAGATATAGCAAGAGAATAGCGGCAAA
AGACAAATATATAC-TCCAAACAAAAAAGCACATCATTTCACTACTTTGTACGAC--TAATTGGAGTGGTTGCTAGGAAA
GAGCAACCAGTTGTCGCCATTAGGCAGGCAAAACCGTCCTTGTCAACCGTGTAAACTAGTATTAAGC--AAAACCAT-TC
TTCCAGCAAAATCATGTACATAACCTAGAGTCAGAGGCCCACTTGCCATCAAGATCTTTAATCATGAGGAAGCTTTAATT
TTTAGTTTACATCTAGTAG------CTAACTGACCAAACCACATGCATGGTATCGCGCAGAAGGACAAGACAACGGTGCT
GACCAAGGCGGCGGGGTACCTAAAGACGTTGGAGGCGCAGGTCTCTGAGCTGGAGGAGAAGAACAATAAGCTGGAGAAGC
ACATCCCGACCTACGACTGCGAGGAGGACGTGCCGCACCAGCAGAGGCGGCAGAGGGCCAAGGTCCAGATCACCAAGGCG
GCGTCGGACGAGGTGGTGAACCTGACGGTGATGGTGATGGTGGAGTGTGACGTGGTGGAGCTGGTGCTCCGCATCCTGGA
GTGCCTCCGGTGGATGGAGCAGGTCAGCGTCATGTCCGTCGACGCCGACACCTACTCCCCGCAGGTGTTGCTCAAGGCCA
TAGCCAGCATCAAGCTCCGGATCGTGGTACGTCGGTGTGGATTTCATTTGTTCCTTGTTTCCTCTTTAATTCATTCATGA
TGACTGCATTTCTCGTCTCGGACAAAAGCAACTTCATCTTACTGGTGGTATGTACGTATATGCAGGATAACGACTGGAAC
CAGGCCTTGTTCCACGAGGCCATGACCAAGGCTGTTAACGATGCAACCGCGTCTCGTCCTCCGCTCGTGCTCACCGCGTA
ATATGCAGGACGAGGAAGGATAT--GTGTCCTGATCCCGAGGAGCAATTTGTAGCCATACGGTCATATAGACATCCAAAG
GTTAGGTTAGA-GGTTGGATGTAACGTAGAAGCGGTAATCTATTTGCAATAGTCGGACGGGCGCCCCTGATGAGTCACTC
TGCACCAAAAAGATCAA-GAGCAGAAAGAAGTCTTCCGTGGGAGCAGCAAGAAATGTTTGTATCGGATTCCTGGAAGATC
GGAACCAAACCGCCGACGAGGGATTATAGCCATATAAGGGCATTACCAACCTCCGCCAAGGGATAGAAGATATGTCGGAG
CTCATTCCCATACCTTGGATTGGTAGATATGAAAACGACATTGTAAATCTCAATGCTCATCAGTAAGGATAGGTAGGCAT
AATGCAGACAAATTACCTGTTAGGCGGCGTGAACCTGGATAAAATCATTGTATCACCTTCAGCACTGACGAAATCCCTTC
GGGCAGCACCCCTTTCTCCACCTACTTC---CACGATAAACATCAGACTGTAGGATCGATGAACCACCATTCGTCGACAT
TTAGCGCCCACCGTGGGGCCCGAACGGATCGCCCTCACTAATAATCCTTCTCATGGAGTGCAAACTTGCCGACGAAAGGG
AAAGGTTGGGAGCTAACCGCCACCTTAATCCCAAGGAGGCCTTTGTCAACCAAACTCCGGGACGGAAACCATCTAGCATC
GGCTTGGGTCCTCCCGGACCATCTCGACGTTGCATGGAGATGACTCCTTAGCTGGGAATATAGGCTTGCGGTGCACCCAC
CTATCTCAACTTGACCAACGGAGGGGGGGGTCTCATGTTGTTGTGGTATCCCGTTAGCTCGACCTAGGCGACTGTCGCTG
GGGTCGAAACCCTGACAAGGGATAAGGTTGCACATCAGATACCCCTCATGGAGAAAATTACTTTTCTGACCTTTTTGGCA
AACTTGATCACAAATTGA-CCCTGTTTTGGAAAAAATTATGTATCTGAC
>chr3D_1
TCCAACGACTCCTTCTTGACAGGCGGCTCCACCTCGAGCTCCGACAAGGACACACCGCCAAATGTTGTCGCGTACATGGA
GGTGGGGCACAGCGACGCCGGCGACCGCAAGGGGAAGGGCCCGGCGAGGAAATGTTGATTTCCTTCGCCCTTCCCCGTTT
TAGCTATGTTTTGTAGTATGAATTTTCGCTGTCTGCCATTTGTCCGGCGAC-------------GAGCTAAGCTATGATC
CGGTTTACTTTATGTAGTGTTGCA-GGGTTGCATGGATTTGAAACTTCAGATATAAGGGACGCGGGTGTGGGAGCAAAAA
TATCAGATGTGTCCGATCAATGCCCGCGAACACGCTCGGGA-TGTCCGCGAGCGTTTGAGGAGCAGATTTGTTGTGGGTG
ATTGTAGATGCTCTTACAACTAGGAGGCGCACACGAGAAGCTCAATGGCACATGGAGGAGTCAATGACGCATTGGCATTG
GTTTTAGCCCCACTTGTCACGGTCGCACCGAAACCTGACCGTTTCTGGCAGTAACCAGCGGCAAAAACAACCGCACTAGC
CCGCAAAAAAAGTAAAAAAAAT-ATACCGTACTCGGCCGAAGAGAGGCACGTACGTGTACGTAACGTTGATACCCATCCC
GTGGATCTGTCTGCCTGCTGCCTCGCAGAATTTGAGCTTCTTCCCAGCAGCTTCGCCCTCGCTCGCGAGCGTCCAACCCA
CGACTTTGACCGCGCGAGCGCGACTGTTTCTATTCAACCCAGTTCGCTGCTTGCGTGCAAACCAAACGACCCACCAACTC
CTTCCTTCCTCTA-------AAAAAAG-GAAAAGAAAATAAAACTCCTTCCTTCCTTCGTCCTCATGCCCCGCCCCA---
-GCGCTGCCTTGCA------TATATAGCAGCTCGGCTGCCTCGCTTTGCCTCCCTGCTATACTTCTCTCTACCAGCTTAC
TCATCGCTCCAGATCAATCATTGGCTGGCTCCATTAACTAGTTACACTACTTGCTGAGGGATGGATGATGTGTGGTGCAG
CCTCGACATGGCCGCCGACATCGCCGGCCTCCACAGCGCCCTCGCCGACCCATTCTGGCCCGCCGACCTTGACCTCATGG
TTTCGACCCACGAGGTGAGCAATGTTAATTCTTGACCCTGCTTCTGTGCAAATCGAAGCGTCTGTAAATTAACACTGGTG
GTTTTGGTGTACGTGTAGGTGGAGGGTATAGCGGACATGGACGCGAGCGGCTTCTTCGTAGGAGGAGGGGATGACCGCTT
CATGCTGCCGTCGTCGACGACGTCGTCACTCTCGTCGAAGCGATCACTCTCCCTCGACAGCGGCGGCTC------CTCAG
GCTCAGGGTCTTTCTCGCTCGACCTCGCGGACGCCACGCGGTACCAGGCGCCGGCGCTGCCCGTGCCGCACAACCCCTTG
GCGGGCGCCGTCGACCACGACGACGAGGCGATCATGCGGGCTATGATGGCGGTCATGTCTTCGTCCTCTGCCTCCCCGTC
CTCCTCGGCATCGTCCCATCCGCAGCCCTTCTGCCGGGACCGGGACAGCAACATGCAACAACAGTCAGCAGCCATGGCGC
GGCAGCTGCGTGGAGGACGAAGTGGCCACGTGATGGTGAAGAGCAGCCTCTCCATGTCGCCGGAGAGAAGCAGCAGCGGC
GGCCCGGGACAGCAGCAGGAGGATCCGACGAGGGCCGCGAGCGGCCACACCGGCCAGCTCTACCACATGATGTCAGAGAG
GAAGCGACGGGAGAAGCTCAACGACAGCTTCCACACGCTGAGGTCGCTCCTTCCCCCCTGCTCAAAGGTATAAACATCAC
CATCATATCACATCCACTCATTCACAAATCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------AAGCAAGCATCCAACACCACCGGCTACAACATTAATTACTTCCTTTCG---CTA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTACAAGTATTACGTTCGGAAATTTAAACTAAAAACACGTCA
GTTATTTCCAAACGGAGGGAGTACTAAAGGTATACTACCGGTTAGTTAAGGCCGTCCACCCAGTC---------------
--------------------------------------------------------------------------------
-------------------TCCAGTGTACAAATATGCTCGTCTATTTTATTTTCAGGGA------TAGATCCACTCTGTT
TGCTGAAATTTTCAAAGAAGACTTGCTCCGGAAAGTAAGTCTCGGTACTTCCGTTCCGAC-CTGTCAAGATCATTGTTTG
CTTCTTTTAATCACTAGACAATGACATTGACAAAGGAAGGTGATCAGAAGGACCACTAGGTTA-----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TAGATAAGAAAAGAA
GGACCACTCGTACATCTAGCTATATGCGTAGTCAAGCTGGAAAGGAACAAACATGGAAGCTTCAAAAGAAACTAGACTTT
CTGAATAGATGCTACTTTAACTTCCCTCCTTA-TTTTTT--TCCATAGTAGAAATATGATTTGAACGCACTTGTGTGGGA
ACAGTAGCATGCAAAAGGCTTATTGGTCCTGTAGTATTTTGTGTCTAACCATGACCATAAATTTAACTAACTAAATCTAA
GTTTTATGTATTAAAAATATTTATAACTTCTTTCGAATACGAATCCAATGATGTAAATTTTGTGGTGTACAATTTATATT
TTGATAGTTAAATCTATG----ATCAAAGCTTAACCAAAAATATACCGAGGAGGACAAATGAAATGATGCAATGATAAAG
ATCACTAGGATGCTTTAAATATAAGAAAAAGATATGTTATCTTTAACTTTTAGGACTTCAACAATGATTGTATATTTCAC
TACAGTGAAGCCATGCCAATCTGTAAAGGAGGACTTCATCGGAAATCTAGCGTACTGTCGGGTAAAGAGTTCTTGT----
-----------------CTGTTTAGAAGCTATAAGGACGTTGGCAGTTTAGAATAGGAAAGCCACCGGAAGAAGGGGGCA
TGCTTTTTTCAGTGGCCCACAGATAGAATAACTGACAACCGTCTTAGGTGCCAAAGATATAGCACGAGAATAGCGGCAAA
AGACAAATATATAC-TCCAAACAAAAAAGCACATCATTTCACTACTTTGTACGAC--TAATTGGAGTGGTTGCTAGGAAA
GAGCAACCAGTTGTCGCCATTAGGCAGGCAAAACCGTCCTTGTCAACCGAGTAAATTAGTATTAAGC--AAAAAACCATC
TTTCAGCAAAATCATGTACATAACCTAGATTCAGAGGCCCACTTGCCATCAAGATCTTTAATCATGAGGGAGCTTTAATT
TTCAGTTTACCCCTAGTAGTATTAACTAACTGACCAAACCTCATGCATGGTATCGCTCAGAAGGACAAGACAACGGTGCT
GACTAAGGCGGCGTGGTACCTAAAGACGCTGGAGGCGCAGGTCTCTGAGCTGGAGGAGAAGAACAACAAGCTGGAAAAGC
ACATCCCGACCTACGACCGTGAGGAGGACGTGCCGCACCAGCAGAGGCGGCAGAGGGCTAAGGTCCAGATCACCAAGGCG
GCGTCGGACGAGGTGGTGAACCTGACGGTGATGGTGATGGTGGAGTGTGACGTGGTGGAGCTGGTGCTACGCATCCTGGA
GTGCCTCCGGTGGATGGAGCAGGTCAGCGTCATGTCCGTCGACGCTGACACCTACTCCCCGCAGGTGTTGCTCAAGGCCA
TAGCCAGCATCAAGCTCCGGATCGTGGTACGTCGGCGTGGATTTCATTTGTTCCTTGTTTCCTCTTTAATTCATTCATGA
TGACTGCGTTTCTTGTCTCGGACAAAAACAACTTCATCTTACTGGTGGTATGTACGTATATGCAGGACCACGACTGGAAC
GAGGCCTTGTTCCACGAGGCCATGGCCAAGGCTGTTAACGACGCAACCGTGTTTCGTCCTCCTCTCGTGCTCACCGCGTA
GTATGCAGGAAGAGGAAGGATATATGTGTCCTAATCCTGAGGAGCAATTCATAGCCATACGGTCATATAGCCGTCCAAAG
GTTAGGTTAGATGGTTGGATGTAACGTAGAAGCGGTAATCTGTTTGCAATAGTCGGATGGGTGCCCCTGATGAGTCACTC
TGCACCAACAAGATCAAAGACGAGAAAGAAGTCTTCAGTGCGAGAAGCTAGAAATGTTTGTATCGGATGCCTGGAAGATC
GGAACCAAACTACCGACGAGGGACTATAGCTATA-AAGGGCAGTACCAACCTCCGCCAAGGGGTAGAAGATATGTCTGAG
CTCATTCCCATACCTTAGATTGGTAGATAGGAAAACGACATTGTAAATCTCAATGCTCATCAATAAGGATAGGTAGGCAT
AATGCAGACAAATTACCCGTTCGGTGGCGTGAACCTGGATAAAATCATTGTATCACCTTCAGCACTGATGAAATCCCTTC
GGGCAACACCTCTCTCTCCACCT---TCTTTCACGATAAACATCAGACCGTAGGATAGATGAACCACCATTCGTCGACAT
TTAGCGCCCACCGTGGGGCCCGAACGGATCGCCCTCACTAATAATCCTTCTCATGGAGTGCAAACTTGCCAACGAAAGGA
AAAGGTTGGGAGCTCACCGCCACCTTAATCCCGAGGGGGCCTTTGTCAACCTAACTCCGGGACGGAAACCATCTAGCATC
GGCTTGGGTCCTCCCGGACCATCTCGACGTTGCATGGAGATGACTCCTCAGCTGGGAATATAGACTTGCGGTGCACCCAC
CTATGTCAACTTGACCAATGGAGGGGGA--TCTCCTGTTGTTGTGGTACCCCGTTAGCTCGACCTAGGCGACTGCCGCGG
GGACCGAAACGCTGACAAGGGATAAGGTTGCACATCAGATACCCCTCATGGAAAAAATTACTCTTCTGACCTTTTTAGCA
AACTTGATCACAAACTGACCCCTGTTTTGAAAAGAATTACGTATCT---
>chr3A_404
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GATGCT----CCATTAGGAGGCGCGCACAAAAAGCTCAATGGTACATGG---AGTCAATGACGCATGGGCATTG
ATTTTAGCCCCACTTGTCACGGTCGCACCGAAACCTGGCCGTTTCCGGCAGTAACCAGCGGCAAAAACAACCGCACTAGC
CCGCAAAAAAAAGAAAAA-GAAAGCACCATACTCGACCGAAGAGAGGCACGTACTTGTACGTAACGTTGATGCCCATGCC
ATGGATCTGTCTGCCTGCTGCCTC--AGAATTTGAGCTTCTTCTCAGCAGCTTCGCCCTCGCTCGCGTGCATCCAGCCCA
CGACTTTGACCGCGCGAGCGCGACGGTTTCTATTCAACCCAGTTCGCTGCTTGCGTGCAAACCAAACGACCCACCAACTC
CTTCCTTCCTTCCTTCCTCTAAAAAAACGAAAAGAAAATAAAACTCCTTCCTTCCTTCGTCCTCATGCCCCGCCCC----
-GCGCTGCCTTGCATTTGCATATATAGCAGCTCGGCTGCCTCGCTTTGCCTCCCTGCTATACTTCTCTCTACCAGCTTAC
TCTTCGCTCCAGATCAATCATTGGCTGGCTCCATTAACTAGTCACACTAGTTGCTGAGGGATGGATGATGTGTGGTGCAG
CCTCGACATGGCCGCCGACATCGCCGGCCTCCACAGCGCCCTCGCCGACCCATTCTGGCCCGCCGACCTTGACCTCATGG
TTTCGACCCACGAGGTGAGC-------------GACCCTGCTTCCTTGCAAATCGAAGCGTCTGTAAATTAAGACTGGTG
GTTTTGGTGTACGTGTAGGTGGAGGGTATGGCGGACATGGACGCGAGCGGCTTCTTCGTAGGAGGAGGGGATGACCGCTT
CATGCTGCCGTCGTCGACGACGTCGTCACTCTCGTCCAAGCGATCACTCTCCCTCGACAGCGGCGGCTCCTCAGGCTCAG
GCTCAGGGTCTTTCTCGCTCGACCTCGCGGACGCCTCGCGGTACCAGGCGCCGGCGCTGCCCGTGCCGCACAACCCCTTG
GCGGGCGCCGTCGACCACGACGACGAGGCGATCATGCGGGCTATGATGGCGGTCATGTCTTCGTCCTCTGCCTCCCCGTC
CTCCTCGGCATCCTCCCATCCGCAGCCCTTCTGCCGGGACCGGGACAGCAACATGCAACAACAGTCAGCAGCCATGGCGC
CGCAGCTGCGTAGAGGACGAAGTGGCCACGTGATGGTGAAGAGCAGCCTCTCCATGTCGCCGGAGAGAAGCAGCAGCGGC
GGCCGGGGACAGCAGCAGGAGGAGCCGACGAGGGCCGCGAGCGGCAACACCGGCCAGCTCTACCACATGATGTCAGAGAG
GAAGCGACGGGAGAAGCTCAACGACAGCTTCCACACGCTGAGGTCGCTCCTTCCCCCCTGCTCAAAGGTATAAACATCAC
CATCATATAACATCCACTCATTCACAAATCTAAGCAAGGCTAGTCATAGTGGGAGTAACTTAGCTAGTAATATAACACAT
TTTAAAACAAATTTACTTATATGGCACCTAGTTAATGAGGAGAGAGGTGTTTGGAGTAACATATTATGTTACGATCATAT
AGCGTTTCCCAAAAAATGTTGAGTCTATGAGCTAATAAATGAAGCAATCTATGACACTACAAATATGTTACTTTGAGGGT
GCTTGGATACAAGGGACTATTTTCAGTCTGACTAAAAATAGTCTCTTTTAGAGGCTAAAGTTCCAAGCACCCCTGACTAA
AAAGAGGCTAGGACTAGTCTTGAGGCTAAAATCTTTTAGTCATGGGAAACCTACTAAAATATGTATTAGCTCTCTCTCTC
CTCATTTAATTCCTCTCCTTAGTTCTGGATTGGAGGGTTTGGAGGATAATAAATGCTCAATAACTAAATTTTAGTCTCTT
TAGTATTTGGATCCAAGCATGGGTGAGACTAGCAAGTTTTAGTCCCACTACTTTTAGTCATGGGACCAAAACGTATCAAG
CATGCTCTTTGCATTATGAAGATAGTAATTTAGAGTAGTGTCATATGCATGACACTAGTCTAAGTTACTCCCCACTATGA
CCAGTCTAAGCAAGCATCCAACACCACCGGCTACAACATTAATTACTTCCTTTCGCTACTA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTACAAGTATTACGTTTGGAAATTTAAACTAAAAACGCATCA
ATTATTTCCAGACGGAGGGAGTACTAAAGGTATACTACTGGTTACTCCCTCCGTTCCAAATTAGATGTCTTTCATTTGTC
TAGAAACGGATGTACCTAGACACTATACAAGTATAGATGCATCCCAATGTGGACAAATGCAAGTCATCTAAATTCGAACG
GAGGGAGTAGTTAATAAGGTCCGGTGTACAAATATGCTCCTCTATTTTATTTTCAAGGATGATTACAGATCCTCTCTGTT
TGCTGAAATTTTCAAAGAAGACTTGCTCCGGAAAGTAAGTCTCGGTACTTCCGTCCCGAC-CTGTCAAGATCATTGTTTG
CTTCTTTTAATCACTAGACAATGACATTGACAAAGGAAGGTGATCAGAAGGACCACTAGATTA-----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TA-ATAAGAAAAGAA
GAACCACTCATATATCTAGCTATATGCGTAGTCAAGCTGGAAAGGAACAAACATGGAAGCTTCAAAAGAAACTAGACTTT
CTAAATAGATGCTACTTTAACTTCCCTCCTCATTTTTTT--TCCATAGTAGAAATATGATTTGAACGCACTTGTCTGGGA
ACAGTAGCATGCAAAAGGCTTATTGGTCCTGTAGTATTTTGTGTCCAACTGTGACCATAAATTTAACTAATTAAATATAA
GTTTTATGTATTAAAAATATTTCAAACTT-TTTTGAATACGAATCCAATGATGTAAATTTTGTGGTGTACAATTTATATT
TCGATAGTTAAATCTATGTATGATCAAAGTTTAACCAAAAATACACCGAGAATGAAATGG-------TGTAATGATAAAG
ATCACTAGGATACTTTAAATATAAGAGAAAGATATGTTATCCTTAACTTGTAGGACTTCAACAATGATTGTATATTTCAC
TACAGTGAAGCCATGCCAATCTGTCGGGT-------------AAATCTAGCGTACTGTCGGGTAAAGAGTTCTTGTTTAC
TCCCTAAAAAAGAGTTATTGTTTAGAAGCTATAAGGACGTTGGCAGTTTAGAATAGGAAAGCCACCGGAAAGAGGGGCCA
TGC-TTTTTTTGTGGCCCACAGATAGAATAATCGACAGCCGTATTAGGTGCCAAAGATGTAGCAAGAGAATAGTGGCAAA
AGACAATATATACTTTCCAAACAAAAAAGCACATCATTTCACTACTTTATATGACTATAATTGGAGCGGTTGCTAGGAAA
GAGCAACCTGTTGTCGCAATTAGGCAGGCAAAACCGTCCTTGTCAACCGAGTAAATTAGTATTAAGCAAAAAACCAT-TC
TTCCAGCAAAATCATGTACATAACCTAGAGTCAGAGGCCCACTTGCCATCAAGATCTTTAATCATGAGGGAGCTTTAATT
TTCGGTTTACCCCTAGTAGTATTAACTAACTGGCCAAACCCCATGCATGGTATCATGCAGAAGGACAAGACAACGGTGCT
AACCAAGGCGGCAGGGTACCTAAAGACGCTGGAGGCGCAGGTCTCTGAGCTGGAGGAGAAGAACAACAAGTTGGAGAAGC
ACATTCCGACCTACGATTGCGAGGAGGACGTGCCGCACCAGCAGAGGCGGCAGAGGGCCAAGGTCCAAATAACCAAGGCG
GCATCAGACGGGGTGGTGAACCTGACGGTGATGGTGATGGTGGAGTGTGACGTGGTGGAGCTGGTGCTCCGCATCCTGGA
GTGCCTCCGGTGGATGGAGCAGGTCAACGTCATGTCCGTCGACGCCGACACCTACTCCCCGCAGGTGTTGCTCAAGGCCA
TAGCCAGCATCAAGCTCCGGATCGTGGTACGTTGGCGTGGATTTCATTTGTACCTTGTTTCCTCT---------------
-------------CGTCTCGGACAAAAGCAATTTCATCTTACAGGTGGTATGTACGTATATGCAGGACGACGACTGGAAC
CAGGCCTTGTTCCACGAGGCCATGACCAAGGCTGTTAACGACGCGACCGCGTCTCGTCCTTCGCTCGTGCTCACCGCGTA
GTATGCAGGAAGAGGAAGGATAT--GTGTCATGATCCCGAGGAGCAATTCGTAGCCATACGGTCATATAGCCATCCAAAG
GTTAGGTTAGATGGTTGGATGTAACGTAGAAGCAGTAATTTGTTTGCAATAGTCGGATGGGCGCCCCTGATGAGTCACTC
TGCACCAACAAGATCAA-GACGAGAAGGAAGTCTTCCGTGGGAGCAGCTAGAAATGTTTGTATCAGATCCTTGGAAGATC
GGAACCAAACTACTGTTGAGGGACTATAGCTATATAAGGGCAGTACCAACCTCCGCCAAGGGGTAGAAGATATGTCGGAG
CTCATTCCCATACCTTATATTGGTAGATAGGAAAATGACATTGTAAATCTCAATGCTCATCAATAAGGATAGGTAGGCAT
AATGCAGACAAATTACCCGTTTGGTGGCGTGATCCTGGATAACATCATTGCATCACCTTCAGCACTGACGAAATCCATTC
AGGCAGCACCCCTTTCCCCACCT---TC---CATGATAAACAGCAGACTGTAAGATCGATGAACCATTATTCGTCGACAT
TTAGCGCCCACCGTGGGGCCCGAACGGATTGCCCTCACTAATAATCATTCTTATGGAGCGCAAACTTGCCGACGAAAGGG
AAATGTTGGGAGCTAACTGCCACCTTAATCCCGAGGAGGCCTTTGTCAACCTAACTCTGGGACTGAAACCATCTAGCATC
GGCTTGGGTCC-CCCAGACCATCTTGACGTTGCATGAAGATGA--CCTTAGGTGGGAATATAGGCTTGCGGTGCACCCAC
CTATATCAACCCGACCAATGAA--GGGGGGTCTCCTGTTGTTGTGGTACACCGTTAGCTCGACCTAGGCGACTGCCGCTG
GGACCGAAACCCTGACAAGGGATAAGATTACACATCAGATACCCCTCATGGAGAAAATTACTGT--TGACCTTTTTGGCA
ACCTTGATCACAAATCGA-CCCTATTTTAAAAAGAATTACGTATCCGA-
>SNPs
---S------------------------------------S---------------S--------S----S---------
-----------S-----------------------S---S----------------------------------------
-------------------------S-------S---SS-SSSSSS-SSS-SSSSSSSSSSSSS--------S-------
---S--------------------S----------S----------S------S--S----SS-SS---------S----
---S---S---------S---------SS-SSS------SSS-------------------S--------------S---
---------------------------------S--------------------------------------------S-
--------------------------------------------------------------------------------
---S------------------------------------------------------S---------------------
------S--------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-------------------------------------------------------------SSSS
S-----------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S--------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-------------------------------S-------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S----SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
------------------------------------------S-------------S-----------------------
--------------------------------------------------------------------------------
-------------------------------------------S-------------------S----------------
----------------------------------------------------SS---SSSS-------------------
---------------------------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
---S----------------------------------------------------------------------------
-------------------S-------------------SS----------S----------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-----S---------S---------------------------------------------S---S--------------
--------------------------------------------------------------------------------
--------------------S------------------------------------------S----------------
----------S--S------------------------S-------------------------------S---------
--------------------------------------S-S-S-------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----S------------------------
---------------------------------------------------------------------S----------
--S-------SS----------------------------S---------------------------------------
----------------------------S-------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-------S-----------------------------------------------------------SS-----------
-----------------------------------------S--------------------------------------
S---------S--------------------------------------S--------------------S---------
-----------------------------------------S---------------S----------------------
--------S-----------SS--------------------------S-------------------S-----------
----------SS-----------S------S-----------S-------------------S-----------------
----------------S------------S--------------------------------S-----------------
-----------------S---S--S-------------------------------------------------------
-----------------------SSS------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S------------------S----------------------------
--------------------------------------------------------------------------------
----S-------------S---------------S-------------S-------------------------S-----
--SS----------------------------------------------------------S-----------------
-----------------------------S---S-----S--------S
>forward_479
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GTCAATGACGCATGGGCATC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_2713
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GACGATCT
AGAGGTACGCGC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------
>forward_619
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AAGAGAGGCACGTACGTGTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_2733
--------------------------------------------------------------------------------
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------------GCGCCCTGTAAACTGAGAGA------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_662
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GGATATGTCTGCCTGCTGCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_3330
--------------------------------------------------------------------------------
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-------------------------------------------------TTGGGAACGGAGGGAGTAGA-----------
--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_2732
--------------------------------------------------------------------------------
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------------------------------------------------------------------------GACGATCT
AGAGGTACGCGC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_4868
--------------------------------------------------------------------------------
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-------------------------------------------------------------------TAACGACTGGAAC
CAGGCCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_4210
--------------------------------------------------------------------------------
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------------------------------AAACCGTCCTTGTCAACCGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_5212
--------------------------------------------------------------------------------
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-----------GCCGACGAGGGATTATAGCC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
