Multiple sequence alignment - TraesCS3B01G234900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G234900 chr3B 100.000 2255 0 0 1 2255 367479289 367481543 0.000000e+00 4165.0
1 TraesCS3B01G234900 chr3B 82.051 390 49 15 1427 1803 357728914 357728533 1.680000e-81 313.0
2 TraesCS3B01G234900 chr3B 83.028 218 29 7 1427 1640 25214590 25214803 8.220000e-45 191.0
3 TraesCS3B01G234900 chr6A 95.024 844 27 4 1427 2255 447909671 447908828 0.000000e+00 1312.0
4 TraesCS3B01G234900 chr6A 80.889 225 36 7 1419 1641 203591777 203591996 1.070000e-38 171.0
5 TraesCS3B01G234900 chr4A 94.905 844 29 3 1426 2255 590978932 590979775 0.000000e+00 1308.0
6 TraesCS3B01G234900 chr4A 96.970 33 1 0 445 477 620015054 620015022 3.130000e-04 56.5
7 TraesCS3B01G234900 chr3A 88.738 1030 55 18 445 1429 365965635 365966648 0.000000e+00 1203.0
8 TraesCS3B01G234900 chr3A 80.000 250 25 14 216 440 609991775 609992024 6.450000e-36 161.0
9 TraesCS3B01G234900 chr6B 89.093 871 52 12 1423 2252 710654504 710655372 0.000000e+00 1042.0
10 TraesCS3B01G234900 chr6B 83.505 194 24 8 1427 1618 256346960 256346773 8.280000e-40 174.0
11 TraesCS3B01G234900 chr3D 85.910 1022 69 32 444 1427 274727209 274728193 0.000000e+00 1020.0
12 TraesCS3B01G234900 chr3D 81.982 222 37 3 1427 1648 600568806 600568588 3.820000e-43 185.0
13 TraesCS3B01G234900 chr1D 90.862 383 26 6 1882 2255 426985749 426985367 2.580000e-139 505.0
14 TraesCS3B01G234900 chr1D 85.526 380 38 13 1426 1803 426986643 426986279 4.540000e-102 381.0
15 TraesCS3B01G234900 chr5D 87.616 323 30 6 921 1242 13789949 13789636 1.270000e-97 366.0
16 TraesCS3B01G234900 chr5D 85.759 323 33 7 921 1242 13811788 13811478 1.670000e-86 329.0
17 TraesCS3B01G234900 chr5D 80.220 273 42 11 1427 1692 180466243 180465976 6.350000e-46 195.0
18 TraesCS3B01G234900 chr5D 100.000 31 0 0 445 475 419367958 419367928 8.700000e-05 58.4
19 TraesCS3B01G234900 chr1B 81.646 474 48 20 1 440 593612241 593612709 7.660000e-95 357.0
20 TraesCS3B01G234900 chr5A 86.103 331 31 7 921 1242 10835734 10835410 2.140000e-90 342.0
21 TraesCS3B01G234900 chr5B 89.591 269 21 3 975 1242 13225292 13225030 3.590000e-88 335.0
22 TraesCS3B01G234900 chr5B 78.947 285 34 15 216 475 640279553 640279836 1.070000e-38 171.0
23 TraesCS3B01G234900 chr5B 96.970 33 1 0 445 477 692878089 692878057 3.130000e-04 56.5
24 TraesCS3B01G234900 chr5B 96.970 33 1 0 445 477 700298386 700298418 3.130000e-04 56.5
25 TraesCS3B01G234900 chr5B 94.286 35 1 1 445 478 52308817 52308851 4.000000e-03 52.8
26 TraesCS3B01G234900 chr1A 97.059 34 1 0 445 478 539878823 539878856 8.700000e-05 58.4
27 TraesCS3B01G234900 chrUn 96.970 33 1 0 445 477 212341967 212341935 3.130000e-04 56.5
28 TraesCS3B01G234900 chr7B 100.000 30 0 0 448 477 20838880 20838851 3.130000e-04 56.5
29 TraesCS3B01G234900 chr6D 100.000 29 0 0 449 477 159490544 159490572 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G234900 chr3B 367479289 367481543 2254 False 4165 4165 100.000 1 2255 1 chr3B.!!$F2 2254
1 TraesCS3B01G234900 chr6A 447908828 447909671 843 True 1312 1312 95.024 1427 2255 1 chr6A.!!$R1 828
2 TraesCS3B01G234900 chr4A 590978932 590979775 843 False 1308 1308 94.905 1426 2255 1 chr4A.!!$F1 829
3 TraesCS3B01G234900 chr3A 365965635 365966648 1013 False 1203 1203 88.738 445 1429 1 chr3A.!!$F1 984
4 TraesCS3B01G234900 chr6B 710654504 710655372 868 False 1042 1042 89.093 1423 2252 1 chr6B.!!$F1 829
5 TraesCS3B01G234900 chr3D 274727209 274728193 984 False 1020 1020 85.910 444 1427 1 chr3D.!!$F1 983
6 TraesCS3B01G234900 chr1D 426985367 426986643 1276 True 443 505 88.194 1426 2255 2 chr1D.!!$R1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.037605 GATTCGTGGACGGAACACCT 60.038 55.0 0.0 0.0 40.29 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 2041 0.384725 CAAGCACCGAAGCGACTTTG 60.385 55.0 0.0 0.0 40.15 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.946745 GCTAGATGGCCACTGAGAAC 58.053 55.000 8.16 0.00 0.00 3.01
24 25 1.208052 GCTAGATGGCCACTGAGAACA 59.792 52.381 8.16 0.00 0.00 3.18
25 26 2.898705 CTAGATGGCCACTGAGAACAC 58.101 52.381 8.16 0.00 0.00 3.32
26 27 1.059098 AGATGGCCACTGAGAACACA 58.941 50.000 8.16 0.00 0.00 3.72
27 28 1.632409 AGATGGCCACTGAGAACACAT 59.368 47.619 8.16 0.00 0.00 3.21
28 29 2.012673 GATGGCCACTGAGAACACATC 58.987 52.381 8.16 0.00 0.00 3.06
29 30 0.320683 TGGCCACTGAGAACACATCG 60.321 55.000 0.00 0.00 0.00 3.84
30 31 1.639298 GGCCACTGAGAACACATCGC 61.639 60.000 0.00 0.00 0.00 4.58
31 32 1.639298 GCCACTGAGAACACATCGCC 61.639 60.000 0.00 0.00 0.00 5.54
32 33 1.354337 CCACTGAGAACACATCGCCG 61.354 60.000 0.00 0.00 0.00 6.46
33 34 0.667487 CACTGAGAACACATCGCCGT 60.667 55.000 0.00 0.00 0.00 5.68
34 35 0.885879 ACTGAGAACACATCGCCGTA 59.114 50.000 0.00 0.00 0.00 4.02
35 36 1.269166 CTGAGAACACATCGCCGTAC 58.731 55.000 0.00 0.00 0.00 3.67
36 37 0.599060 TGAGAACACATCGCCGTACA 59.401 50.000 0.00 0.00 0.00 2.90
37 38 1.203758 TGAGAACACATCGCCGTACAT 59.796 47.619 0.00 0.00 0.00 2.29
38 39 1.588404 GAGAACACATCGCCGTACATG 59.412 52.381 0.00 0.00 0.00 3.21
39 40 0.650512 GAACACATCGCCGTACATGG 59.349 55.000 0.00 0.00 0.00 3.66
47 48 2.202878 CCGTACATGGCTGGGACG 60.203 66.667 6.74 6.74 36.28 4.79
48 49 2.202878 CGTACATGGCTGGGACGG 60.203 66.667 5.93 0.00 34.20 4.79
57 58 4.003788 CTGGGACGGCGAACCTGT 62.004 66.667 16.62 0.00 0.00 4.00
58 59 3.530910 CTGGGACGGCGAACCTGTT 62.531 63.158 16.62 0.00 0.00 3.16
59 60 2.741211 GGGACGGCGAACCTGTTC 60.741 66.667 16.62 0.00 36.29 3.18
60 61 2.029964 GGACGGCGAACCTGTTCA 59.970 61.111 16.62 0.00 39.46 3.18
61 62 1.375523 GGACGGCGAACCTGTTCAT 60.376 57.895 16.62 0.00 39.46 2.57
62 63 0.108520 GGACGGCGAACCTGTTCATA 60.109 55.000 16.62 0.00 39.46 2.15
63 64 1.278238 GACGGCGAACCTGTTCATAG 58.722 55.000 16.62 3.22 39.46 2.23
64 65 0.108329 ACGGCGAACCTGTTCATAGG 60.108 55.000 16.62 0.00 43.71 2.57
65 66 0.810031 CGGCGAACCTGTTCATAGGG 60.810 60.000 0.00 0.00 42.35 3.53
66 67 0.539986 GGCGAACCTGTTCATAGGGA 59.460 55.000 10.38 0.00 42.35 4.20
67 68 1.141053 GGCGAACCTGTTCATAGGGAT 59.859 52.381 10.38 0.00 42.35 3.85
68 69 2.421529 GGCGAACCTGTTCATAGGGATT 60.422 50.000 10.38 0.00 42.35 3.01
69 70 2.614057 GCGAACCTGTTCATAGGGATTG 59.386 50.000 10.38 0.00 42.35 2.67
70 71 3.206150 CGAACCTGTTCATAGGGATTGG 58.794 50.000 10.38 0.00 42.35 3.16
71 72 3.555966 GAACCTGTTCATAGGGATTGGG 58.444 50.000 5.18 0.00 42.35 4.12
72 73 1.852965 ACCTGTTCATAGGGATTGGGG 59.147 52.381 0.00 0.00 42.35 4.96
73 74 1.479389 CCTGTTCATAGGGATTGGGGC 60.479 57.143 0.00 0.00 34.06 5.80
74 75 0.182537 TGTTCATAGGGATTGGGGCG 59.817 55.000 0.00 0.00 0.00 6.13
75 76 0.472471 GTTCATAGGGATTGGGGCGA 59.528 55.000 0.00 0.00 0.00 5.54
76 77 0.472471 TTCATAGGGATTGGGGCGAC 59.528 55.000 0.00 0.00 0.00 5.19
88 89 3.635510 GGCGACCCTTCTCAGGAT 58.364 61.111 0.00 0.00 44.19 3.24
89 90 2.822215 GGCGACCCTTCTCAGGATA 58.178 57.895 0.00 0.00 44.19 2.59
90 91 0.389757 GGCGACCCTTCTCAGGATAC 59.610 60.000 0.00 0.00 44.19 2.24
91 92 1.112113 GCGACCCTTCTCAGGATACA 58.888 55.000 0.00 0.00 44.19 2.29
92 93 1.480954 GCGACCCTTCTCAGGATACAA 59.519 52.381 0.00 0.00 44.19 2.41
93 94 2.738964 GCGACCCTTCTCAGGATACAAC 60.739 54.545 0.00 0.00 44.19 3.32
94 95 2.496070 CGACCCTTCTCAGGATACAACA 59.504 50.000 0.00 0.00 44.19 3.33
95 96 3.429547 CGACCCTTCTCAGGATACAACAG 60.430 52.174 0.00 0.00 44.19 3.16
96 97 3.769844 GACCCTTCTCAGGATACAACAGA 59.230 47.826 0.00 0.00 44.19 3.41
97 98 4.366267 ACCCTTCTCAGGATACAACAGAT 58.634 43.478 0.00 0.00 44.19 2.90
98 99 4.163078 ACCCTTCTCAGGATACAACAGATG 59.837 45.833 0.00 0.00 44.19 2.90
99 100 4.125703 CCTTCTCAGGATACAACAGATGC 58.874 47.826 0.00 0.00 44.19 3.91
100 101 4.141756 CCTTCTCAGGATACAACAGATGCT 60.142 45.833 0.00 0.00 44.19 3.79
101 102 5.426504 CTTCTCAGGATACAACAGATGCTT 58.573 41.667 0.00 0.00 41.41 3.91
102 103 6.407412 CCTTCTCAGGATACAACAGATGCTTA 60.407 42.308 0.00 0.00 44.19 3.09
103 104 6.544928 TCTCAGGATACAACAGATGCTTAA 57.455 37.500 0.00 0.00 41.41 1.85
104 105 7.129457 TCTCAGGATACAACAGATGCTTAAT 57.871 36.000 0.00 0.00 41.41 1.40
105 106 8.250143 TCTCAGGATACAACAGATGCTTAATA 57.750 34.615 0.00 0.00 41.41 0.98
106 107 8.874156 TCTCAGGATACAACAGATGCTTAATAT 58.126 33.333 0.00 0.00 41.41 1.28
107 108 9.499479 CTCAGGATACAACAGATGCTTAATATT 57.501 33.333 0.00 0.00 41.41 1.28
108 109 9.494271 TCAGGATACAACAGATGCTTAATATTC 57.506 33.333 0.00 0.00 41.41 1.75
109 110 8.725148 CAGGATACAACAGATGCTTAATATTCC 58.275 37.037 0.00 0.00 41.41 3.01
110 111 8.439971 AGGATACAACAGATGCTTAATATTCCA 58.560 33.333 0.00 0.00 41.41 3.53
111 112 9.066892 GGATACAACAGATGCTTAATATTCCAA 57.933 33.333 0.00 0.00 0.00 3.53
114 115 8.757982 ACAACAGATGCTTAATATTCCAATCT 57.242 30.769 0.00 0.00 0.00 2.40
115 116 9.851686 ACAACAGATGCTTAATATTCCAATCTA 57.148 29.630 0.00 0.00 0.00 1.98
121 122 9.606631 GATGCTTAATATTCCAATCTAGTAGGG 57.393 37.037 0.00 0.00 0.00 3.53
122 123 8.736097 TGCTTAATATTCCAATCTAGTAGGGA 57.264 34.615 0.00 0.00 0.00 4.20
123 124 9.338968 TGCTTAATATTCCAATCTAGTAGGGAT 57.661 33.333 0.00 0.00 0.00 3.85
124 125 9.606631 GCTTAATATTCCAATCTAGTAGGGATG 57.393 37.037 0.00 0.00 0.00 3.51
128 129 9.566331 AATATTCCAATCTAGTAGGGATGATCA 57.434 33.333 0.00 0.00 0.00 2.92
129 130 9.741198 ATATTCCAATCTAGTAGGGATGATCAT 57.259 33.333 8.25 8.25 0.00 2.45
131 132 8.972662 TTCCAATCTAGTAGGGATGATCATAA 57.027 34.615 8.54 0.00 0.00 1.90
132 133 8.972662 TCCAATCTAGTAGGGATGATCATAAA 57.027 34.615 8.54 0.00 0.00 1.40
133 134 8.816894 TCCAATCTAGTAGGGATGATCATAAAC 58.183 37.037 8.54 4.79 0.00 2.01
134 135 8.043710 CCAATCTAGTAGGGATGATCATAAACC 58.956 40.741 8.54 11.41 0.00 3.27
135 136 8.597167 CAATCTAGTAGGGATGATCATAAACCA 58.403 37.037 19.82 8.17 0.00 3.67
136 137 8.923838 ATCTAGTAGGGATGATCATAAACCAT 57.076 34.615 19.82 13.08 0.00 3.55
138 139 9.256228 TCTAGTAGGGATGATCATAAACCATAC 57.744 37.037 20.78 20.78 37.90 2.39
139 140 7.259088 AGTAGGGATGATCATAAACCATACC 57.741 40.000 23.00 12.79 40.74 2.73
141 142 6.131972 AGGGATGATCATAAACCATACCTG 57.868 41.667 19.82 0.00 46.88 4.00
142 143 5.612688 AGGGATGATCATAAACCATACCTGT 59.387 40.000 19.82 2.46 46.88 4.00
143 144 5.940470 GGGATGATCATAAACCATACCTGTC 59.060 44.000 8.54 0.00 38.09 3.51
144 145 5.639506 GGATGATCATAAACCATACCTGTCG 59.360 44.000 8.54 0.00 0.00 4.35
145 146 5.862678 TGATCATAAACCATACCTGTCGA 57.137 39.130 0.00 0.00 0.00 4.20
146 147 6.419484 TGATCATAAACCATACCTGTCGAT 57.581 37.500 0.00 0.00 0.00 3.59
147 148 6.455647 TGATCATAAACCATACCTGTCGATC 58.544 40.000 0.00 0.00 0.00 3.69
148 149 4.866921 TCATAAACCATACCTGTCGATCG 58.133 43.478 9.36 9.36 0.00 3.69
149 150 2.596904 AAACCATACCTGTCGATCGG 57.403 50.000 16.41 0.89 0.00 4.18
150 151 1.771565 AACCATACCTGTCGATCGGA 58.228 50.000 16.41 1.13 0.00 4.55
151 152 1.996798 ACCATACCTGTCGATCGGAT 58.003 50.000 16.41 0.00 0.00 4.18
152 153 1.887198 ACCATACCTGTCGATCGGATC 59.113 52.381 16.41 7.95 0.00 3.36
153 154 2.163509 CCATACCTGTCGATCGGATCT 58.836 52.381 16.41 0.00 0.00 2.75
154 155 2.095008 CCATACCTGTCGATCGGATCTG 60.095 54.545 16.41 9.88 0.00 2.90
155 156 2.632987 TACCTGTCGATCGGATCTGA 57.367 50.000 16.41 6.72 0.00 3.27
156 157 1.988293 ACCTGTCGATCGGATCTGAT 58.012 50.000 17.16 17.16 0.00 2.90
157 158 3.141767 ACCTGTCGATCGGATCTGATA 57.858 47.619 17.16 11.24 0.00 2.15
158 159 3.078097 ACCTGTCGATCGGATCTGATAG 58.922 50.000 17.16 16.68 0.00 2.08
159 160 2.421775 CCTGTCGATCGGATCTGATAGG 59.578 54.545 25.20 25.20 36.13 2.57
160 161 3.339141 CTGTCGATCGGATCTGATAGGA 58.661 50.000 17.16 14.05 0.00 2.94
161 162 3.751518 TGTCGATCGGATCTGATAGGAA 58.248 45.455 17.16 6.56 0.00 3.36
162 163 3.502595 TGTCGATCGGATCTGATAGGAAC 59.497 47.826 17.16 12.07 0.00 3.62
163 164 3.754323 GTCGATCGGATCTGATAGGAACT 59.246 47.826 17.16 0.00 46.37 3.01
164 165 4.004314 TCGATCGGATCTGATAGGAACTC 58.996 47.826 17.16 3.17 41.75 3.01
165 166 3.127895 CGATCGGATCTGATAGGAACTCC 59.872 52.174 17.16 1.64 41.75 3.85
166 167 3.595190 TCGGATCTGATAGGAACTCCA 57.405 47.619 0.00 0.00 41.75 3.86
167 168 3.491342 TCGGATCTGATAGGAACTCCAG 58.509 50.000 0.00 0.00 41.75 3.86
168 169 3.117474 TCGGATCTGATAGGAACTCCAGT 60.117 47.826 0.00 0.00 41.75 4.00
169 170 3.254657 CGGATCTGATAGGAACTCCAGTC 59.745 52.174 0.00 0.00 41.75 3.51
170 171 4.219115 GGATCTGATAGGAACTCCAGTCA 58.781 47.826 0.00 1.27 41.75 3.41
171 172 4.280677 GGATCTGATAGGAACTCCAGTCAG 59.719 50.000 17.71 17.71 44.32 3.51
172 173 3.027412 TCTGATAGGAACTCCAGTCAGC 58.973 50.000 18.47 0.00 43.47 4.26
173 174 2.102252 CTGATAGGAACTCCAGTCAGCC 59.898 54.545 13.94 0.00 40.39 4.85
174 175 1.067821 GATAGGAACTCCAGTCAGCCG 59.932 57.143 0.00 0.00 41.75 5.52
175 176 1.605058 TAGGAACTCCAGTCAGCCGC 61.605 60.000 0.00 0.00 41.75 6.53
176 177 2.435059 GAACTCCAGTCAGCCGCC 60.435 66.667 0.00 0.00 0.00 6.13
177 178 3.240134 GAACTCCAGTCAGCCGCCA 62.240 63.158 0.00 0.00 0.00 5.69
178 179 2.731691 GAACTCCAGTCAGCCGCCAA 62.732 60.000 0.00 0.00 0.00 4.52
179 180 2.435586 CTCCAGTCAGCCGCCAAG 60.436 66.667 0.00 0.00 0.00 3.61
180 181 3.965539 CTCCAGTCAGCCGCCAAGG 62.966 68.421 0.00 0.00 44.97 3.61
198 199 3.813596 CCGCCATGGCTACTGTTC 58.186 61.111 33.07 3.30 39.32 3.18
199 200 2.173669 CCGCCATGGCTACTGTTCG 61.174 63.158 33.07 15.43 39.32 3.95
200 201 1.153647 CGCCATGGCTACTGTTCGA 60.154 57.895 33.07 0.00 39.32 3.71
201 202 1.421410 CGCCATGGCTACTGTTCGAC 61.421 60.000 33.07 1.19 39.32 4.20
202 203 0.391130 GCCATGGCTACTGTTCGACA 60.391 55.000 29.98 0.00 38.26 4.35
203 204 1.943968 GCCATGGCTACTGTTCGACAA 60.944 52.381 29.98 0.00 38.26 3.18
204 205 1.732259 CCATGGCTACTGTTCGACAAC 59.268 52.381 0.00 0.00 0.00 3.32
205 206 2.412870 CATGGCTACTGTTCGACAACA 58.587 47.619 0.00 0.00 40.40 3.33
215 216 2.798283 TGTTCGACAACAGAAATCGACC 59.202 45.455 0.00 0.00 44.05 4.79
216 217 2.074547 TCGACAACAGAAATCGACCC 57.925 50.000 0.00 0.00 39.80 4.46
217 218 1.616865 TCGACAACAGAAATCGACCCT 59.383 47.619 0.00 0.00 39.80 4.34
218 219 1.726791 CGACAACAGAAATCGACCCTG 59.273 52.381 8.46 8.46 38.10 4.45
219 220 2.767505 GACAACAGAAATCGACCCTGT 58.232 47.619 9.54 9.54 42.34 4.00
220 221 2.480419 GACAACAGAAATCGACCCTGTG 59.520 50.000 14.39 11.51 40.61 3.66
221 222 2.104111 ACAACAGAAATCGACCCTGTGA 59.896 45.455 14.39 0.00 40.61 3.58
222 223 3.244561 ACAACAGAAATCGACCCTGTGAT 60.245 43.478 14.39 5.84 40.61 3.06
223 224 2.977914 ACAGAAATCGACCCTGTGATG 58.022 47.619 13.30 0.00 39.43 3.07
224 225 2.303022 ACAGAAATCGACCCTGTGATGT 59.697 45.455 13.30 0.00 39.43 3.06
225 226 2.932614 CAGAAATCGACCCTGTGATGTC 59.067 50.000 0.00 0.00 0.00 3.06
230 231 2.579207 CGACCCTGTGATGTCGTATT 57.421 50.000 4.04 0.00 46.83 1.89
231 232 3.703286 CGACCCTGTGATGTCGTATTA 57.297 47.619 4.04 0.00 46.83 0.98
232 233 4.036567 CGACCCTGTGATGTCGTATTAA 57.963 45.455 4.04 0.00 46.83 1.40
233 234 4.426416 CGACCCTGTGATGTCGTATTAAA 58.574 43.478 4.04 0.00 46.83 1.52
234 235 5.047847 CGACCCTGTGATGTCGTATTAAAT 58.952 41.667 4.04 0.00 46.83 1.40
235 236 5.051039 CGACCCTGTGATGTCGTATTAAATG 60.051 44.000 4.04 0.00 46.83 2.32
236 237 5.123227 ACCCTGTGATGTCGTATTAAATGG 58.877 41.667 0.00 0.00 0.00 3.16
237 238 4.024048 CCCTGTGATGTCGTATTAAATGGC 60.024 45.833 0.00 0.00 0.00 4.40
238 239 4.024048 CCTGTGATGTCGTATTAAATGGCC 60.024 45.833 0.00 0.00 0.00 5.36
239 240 3.880490 TGTGATGTCGTATTAAATGGCCC 59.120 43.478 0.00 0.00 0.00 5.80
240 241 3.252458 GTGATGTCGTATTAAATGGCCCC 59.748 47.826 0.00 0.00 0.00 5.80
241 242 3.117851 TGATGTCGTATTAAATGGCCCCA 60.118 43.478 0.00 0.00 0.00 4.96
242 243 2.645802 TGTCGTATTAAATGGCCCCAC 58.354 47.619 0.00 0.00 0.00 4.61
243 244 1.951602 GTCGTATTAAATGGCCCCACC 59.048 52.381 0.00 0.00 39.84 4.61
251 252 2.123511 TGGCCCCACCACTTGTTG 60.124 61.111 0.00 0.00 46.36 3.33
261 262 1.941812 CACTTGTTGGACTGACGCC 59.058 57.895 0.00 0.00 0.00 5.68
262 263 1.594293 ACTTGTTGGACTGACGCCG 60.594 57.895 0.00 0.00 0.00 6.46
263 264 1.594293 CTTGTTGGACTGACGCCGT 60.594 57.895 0.00 0.00 0.00 5.68
264 265 1.831389 CTTGTTGGACTGACGCCGTG 61.831 60.000 0.00 0.00 0.00 4.94
265 266 2.028484 GTTGGACTGACGCCGTGA 59.972 61.111 0.00 0.00 0.00 4.35
266 267 1.374252 GTTGGACTGACGCCGTGAT 60.374 57.895 0.00 0.00 0.00 3.06
267 268 0.949105 GTTGGACTGACGCCGTGATT 60.949 55.000 0.00 0.00 0.00 2.57
268 269 0.669318 TTGGACTGACGCCGTGATTC 60.669 55.000 0.00 0.00 0.00 2.52
269 270 2.158959 GGACTGACGCCGTGATTCG 61.159 63.158 0.00 0.00 39.52 3.34
270 271 1.443872 GACTGACGCCGTGATTCGT 60.444 57.895 0.00 0.00 42.09 3.85
271 272 1.674611 GACTGACGCCGTGATTCGTG 61.675 60.000 0.00 0.00 39.22 4.35
272 273 2.431771 TGACGCCGTGATTCGTGG 60.432 61.111 0.00 0.00 39.22 4.94
273 274 2.126228 GACGCCGTGATTCGTGGA 60.126 61.111 0.00 0.00 39.22 4.02
274 275 2.431942 ACGCCGTGATTCGTGGAC 60.432 61.111 0.00 0.00 37.55 4.02
275 276 3.541831 CGCCGTGATTCGTGGACG 61.542 66.667 0.00 0.00 41.45 4.79
278 279 4.563630 CGTGATTCGTGGACGGAA 57.436 55.556 0.00 0.00 40.29 4.30
279 280 2.067616 CGTGATTCGTGGACGGAAC 58.932 57.895 0.00 0.00 40.29 3.62
280 281 0.665068 CGTGATTCGTGGACGGAACA 60.665 55.000 0.00 0.00 40.29 3.18
281 282 0.788391 GTGATTCGTGGACGGAACAC 59.212 55.000 5.27 5.27 42.01 3.32
282 283 0.320073 TGATTCGTGGACGGAACACC 60.320 55.000 0.00 0.00 40.29 4.16
283 284 0.037605 GATTCGTGGACGGAACACCT 60.038 55.000 0.00 0.00 40.29 4.00
284 285 0.395312 ATTCGTGGACGGAACACCTT 59.605 50.000 0.00 0.00 40.29 3.50
285 286 0.531090 TTCGTGGACGGAACACCTTG 60.531 55.000 0.00 0.00 40.29 3.61
286 287 1.227438 CGTGGACGGAACACCTTGT 60.227 57.895 0.00 0.00 35.46 3.16
287 288 0.812412 CGTGGACGGAACACCTTGTT 60.812 55.000 0.00 0.00 44.37 2.83
295 296 2.825861 GAACACCTTGTTCGGTAGGA 57.174 50.000 3.41 0.00 45.88 2.94
296 297 2.410939 GAACACCTTGTTCGGTAGGAC 58.589 52.381 3.41 0.00 45.88 3.85
297 298 0.683412 ACACCTTGTTCGGTAGGACC 59.317 55.000 0.00 0.00 34.94 4.46
298 299 0.974383 CACCTTGTTCGGTAGGACCT 59.026 55.000 0.00 0.00 35.66 3.85
299 300 0.974383 ACCTTGTTCGGTAGGACCTG 59.026 55.000 3.53 0.00 35.66 4.00
300 301 0.974383 CCTTGTTCGGTAGGACCTGT 59.026 55.000 3.53 0.00 35.66 4.00
301 302 2.173519 CCTTGTTCGGTAGGACCTGTA 58.826 52.381 3.53 0.00 35.66 2.74
302 303 2.094338 CCTTGTTCGGTAGGACCTGTAC 60.094 54.545 3.53 0.00 35.66 2.90
303 304 1.549203 TGTTCGGTAGGACCTGTACC 58.451 55.000 3.53 3.55 35.66 3.34
304 305 1.203038 TGTTCGGTAGGACCTGTACCA 60.203 52.381 12.98 0.00 40.15 3.25
305 306 1.203287 GTTCGGTAGGACCTGTACCAC 59.797 57.143 12.98 2.07 40.15 4.16
306 307 0.323725 TCGGTAGGACCTGTACCACC 60.324 60.000 12.98 7.21 40.15 4.61
307 308 0.612732 CGGTAGGACCTGTACCACCA 60.613 60.000 12.98 0.00 40.15 4.17
308 309 1.192428 GGTAGGACCTGTACCACCAG 58.808 60.000 3.53 0.00 39.94 4.00
309 310 1.551791 GGTAGGACCTGTACCACCAGT 60.552 57.143 3.53 0.00 39.94 4.00
310 311 2.291800 GGTAGGACCTGTACCACCAGTA 60.292 54.545 3.53 0.00 39.94 2.74
319 320 2.595124 TACCACCAGTACATCATGCG 57.405 50.000 0.00 0.00 0.00 4.73
320 321 0.107703 ACCACCAGTACATCATGCGG 60.108 55.000 0.00 0.00 0.00 5.69
321 322 0.107703 CCACCAGTACATCATGCGGT 60.108 55.000 0.00 0.00 0.00 5.68
322 323 1.290203 CACCAGTACATCATGCGGTC 58.710 55.000 0.00 0.00 0.00 4.79
323 324 0.178068 ACCAGTACATCATGCGGTCC 59.822 55.000 0.00 0.00 0.00 4.46
324 325 0.465705 CCAGTACATCATGCGGTCCT 59.534 55.000 0.00 0.00 0.00 3.85
325 326 1.575244 CAGTACATCATGCGGTCCTG 58.425 55.000 0.00 0.00 0.00 3.86
326 327 0.465705 AGTACATCATGCGGTCCTGG 59.534 55.000 0.00 0.00 0.00 4.45
327 328 0.178068 GTACATCATGCGGTCCTGGT 59.822 55.000 0.00 0.00 0.00 4.00
328 329 1.411246 GTACATCATGCGGTCCTGGTA 59.589 52.381 0.00 0.00 0.00 3.25
329 330 1.131638 ACATCATGCGGTCCTGGTAT 58.868 50.000 0.00 0.00 0.00 2.73
330 331 1.202687 ACATCATGCGGTCCTGGTATG 60.203 52.381 0.00 0.00 0.00 2.39
331 332 1.131638 ATCATGCGGTCCTGGTATGT 58.868 50.000 0.00 0.00 0.00 2.29
332 333 0.464036 TCATGCGGTCCTGGTATGTC 59.536 55.000 0.00 0.00 0.00 3.06
333 334 0.465705 CATGCGGTCCTGGTATGTCT 59.534 55.000 0.00 0.00 0.00 3.41
334 335 0.465705 ATGCGGTCCTGGTATGTCTG 59.534 55.000 0.00 0.00 0.00 3.51
335 336 1.521681 GCGGTCCTGGTATGTCTGC 60.522 63.158 0.00 0.00 0.00 4.26
336 337 1.144057 CGGTCCTGGTATGTCTGCC 59.856 63.158 0.00 0.00 0.00 4.85
337 338 1.144057 GGTCCTGGTATGTCTGCCG 59.856 63.158 0.00 0.00 0.00 5.69
338 339 1.614241 GGTCCTGGTATGTCTGCCGT 61.614 60.000 0.00 0.00 0.00 5.68
339 340 0.179108 GTCCTGGTATGTCTGCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
340 341 0.324368 TCCTGGTATGTCTGCCGTCT 60.324 55.000 0.00 0.00 0.00 4.18
341 342 0.103208 CCTGGTATGTCTGCCGTCTC 59.897 60.000 0.00 0.00 0.00 3.36
342 343 0.103208 CTGGTATGTCTGCCGTCTCC 59.897 60.000 0.00 0.00 0.00 3.71
343 344 0.324368 TGGTATGTCTGCCGTCTCCT 60.324 55.000 0.00 0.00 0.00 3.69
344 345 0.103208 GGTATGTCTGCCGTCTCCTG 59.897 60.000 0.00 0.00 0.00 3.86
345 346 0.528684 GTATGTCTGCCGTCTCCTGC 60.529 60.000 0.00 0.00 0.00 4.85
346 347 2.004808 TATGTCTGCCGTCTCCTGCG 62.005 60.000 0.00 0.00 0.00 5.18
349 350 3.826754 CTGCCGTCTCCTGCGCTA 61.827 66.667 9.73 0.00 0.00 4.26
350 351 3.356639 CTGCCGTCTCCTGCGCTAA 62.357 63.158 9.73 0.00 0.00 3.09
351 352 2.107141 GCCGTCTCCTGCGCTAAT 59.893 61.111 9.73 0.00 0.00 1.73
352 353 1.362717 GCCGTCTCCTGCGCTAATA 59.637 57.895 9.73 0.00 0.00 0.98
353 354 0.940047 GCCGTCTCCTGCGCTAATAC 60.940 60.000 9.73 0.00 0.00 1.89
354 355 0.669077 CCGTCTCCTGCGCTAATACT 59.331 55.000 9.73 0.00 0.00 2.12
355 356 1.878088 CCGTCTCCTGCGCTAATACTA 59.122 52.381 9.73 0.00 0.00 1.82
356 357 2.350580 CCGTCTCCTGCGCTAATACTAC 60.351 54.545 9.73 0.00 0.00 2.73
357 358 2.662249 CGTCTCCTGCGCTAATACTACG 60.662 54.545 9.73 6.43 0.00 3.51
358 359 2.547211 GTCTCCTGCGCTAATACTACGA 59.453 50.000 9.73 0.00 0.00 3.43
359 360 3.003068 GTCTCCTGCGCTAATACTACGAA 59.997 47.826 9.73 0.00 0.00 3.85
360 361 3.003068 TCTCCTGCGCTAATACTACGAAC 59.997 47.826 9.73 0.00 0.00 3.95
361 362 2.947652 TCCTGCGCTAATACTACGAACT 59.052 45.455 9.73 0.00 0.00 3.01
362 363 3.043586 CCTGCGCTAATACTACGAACTG 58.956 50.000 9.73 0.00 0.00 3.16
363 364 2.456989 TGCGCTAATACTACGAACTGC 58.543 47.619 9.73 0.00 0.00 4.40
364 365 2.098607 TGCGCTAATACTACGAACTGCT 59.901 45.455 9.73 0.00 0.00 4.24
365 366 3.313249 TGCGCTAATACTACGAACTGCTA 59.687 43.478 9.73 0.00 0.00 3.49
366 367 3.907194 GCGCTAATACTACGAACTGCTAG 59.093 47.826 0.00 0.00 0.00 3.42
367 368 3.907194 CGCTAATACTACGAACTGCTAGC 59.093 47.826 8.10 8.10 0.00 3.42
368 369 4.319622 CGCTAATACTACGAACTGCTAGCT 60.320 45.833 17.23 0.00 0.00 3.32
369 370 4.912766 GCTAATACTACGAACTGCTAGCTG 59.087 45.833 19.01 19.01 0.00 4.24
370 371 2.846039 TACTACGAACTGCTAGCTGC 57.154 50.000 20.35 5.46 43.25 5.25
371 372 0.173708 ACTACGAACTGCTAGCTGCC 59.826 55.000 20.35 11.95 42.00 4.85
372 373 0.173481 CTACGAACTGCTAGCTGCCA 59.827 55.000 20.35 0.00 42.00 4.92
373 374 0.108804 TACGAACTGCTAGCTGCCAC 60.109 55.000 20.35 11.21 42.00 5.01
374 375 2.447887 CGAACTGCTAGCTGCCACG 61.448 63.158 20.35 17.84 42.00 4.94
375 376 2.743928 AACTGCTAGCTGCCACGC 60.744 61.111 20.35 0.00 42.00 5.34
377 378 4.801624 CTGCTAGCTGCCACGCGA 62.802 66.667 15.93 0.00 42.00 5.87
380 381 4.135153 CTAGCTGCCACGCGACCT 62.135 66.667 15.93 1.54 34.40 3.85
381 382 3.649277 CTAGCTGCCACGCGACCTT 62.649 63.158 15.93 0.00 34.40 3.50
382 383 3.932580 TAGCTGCCACGCGACCTTG 62.933 63.158 15.93 0.00 34.40 3.61
387 388 4.680237 CCACGCGACCTTGCTCCA 62.680 66.667 15.93 0.00 0.00 3.86
388 389 2.434884 CACGCGACCTTGCTCCAT 60.435 61.111 15.93 0.00 0.00 3.41
389 390 2.034879 CACGCGACCTTGCTCCATT 61.035 57.895 15.93 0.00 0.00 3.16
390 391 1.741770 ACGCGACCTTGCTCCATTC 60.742 57.895 15.93 0.00 0.00 2.67
391 392 2.802667 CGCGACCTTGCTCCATTCG 61.803 63.158 0.00 0.00 0.00 3.34
392 393 1.741770 GCGACCTTGCTCCATTCGT 60.742 57.895 0.00 0.00 32.26 3.85
393 394 1.696832 GCGACCTTGCTCCATTCGTC 61.697 60.000 0.00 0.00 32.26 4.20
394 395 1.084370 CGACCTTGCTCCATTCGTCC 61.084 60.000 0.00 0.00 0.00 4.79
395 396 1.079127 ACCTTGCTCCATTCGTCCG 60.079 57.895 0.00 0.00 0.00 4.79
396 397 2.464459 CCTTGCTCCATTCGTCCGC 61.464 63.158 0.00 0.00 0.00 5.54
397 398 2.802667 CTTGCTCCATTCGTCCGCG 61.803 63.158 0.00 0.00 39.92 6.46
398 399 3.583276 TTGCTCCATTCGTCCGCGT 62.583 57.895 4.92 0.00 39.49 6.01
399 400 2.103538 GCTCCATTCGTCCGCGTA 59.896 61.111 4.92 0.00 39.49 4.42
400 401 2.228914 GCTCCATTCGTCCGCGTAC 61.229 63.158 4.92 0.00 39.49 3.67
401 402 1.588139 CTCCATTCGTCCGCGTACC 60.588 63.158 4.92 0.00 39.49 3.34
402 403 2.182284 CCATTCGTCCGCGTACCA 59.818 61.111 4.92 0.00 39.49 3.25
403 404 1.876714 CCATTCGTCCGCGTACCAG 60.877 63.158 4.92 0.00 39.49 4.00
404 405 1.876714 CATTCGTCCGCGTACCAGG 60.877 63.158 4.92 0.00 39.49 4.45
405 406 2.048023 ATTCGTCCGCGTACCAGGA 61.048 57.895 4.92 0.21 39.49 3.86
406 407 2.001361 ATTCGTCCGCGTACCAGGAG 62.001 60.000 4.92 0.92 37.18 3.69
407 408 4.849329 CGTCCGCGTACCAGGAGC 62.849 72.222 4.92 0.00 37.18 4.70
408 409 3.755628 GTCCGCGTACCAGGAGCA 61.756 66.667 4.92 0.00 37.18 4.26
409 410 3.449227 TCCGCGTACCAGGAGCAG 61.449 66.667 4.92 0.00 31.95 4.24
410 411 4.514577 CCGCGTACCAGGAGCAGG 62.515 72.222 4.92 0.00 0.00 4.85
413 414 3.449227 CGTACCAGGAGCAGGCGA 61.449 66.667 0.00 0.00 0.00 5.54
414 415 2.496817 GTACCAGGAGCAGGCGAG 59.503 66.667 0.00 0.00 0.00 5.03
415 416 3.461773 TACCAGGAGCAGGCGAGC 61.462 66.667 0.00 0.00 0.00 5.03
427 428 4.266070 GCGAGCTCGTCCGCCATA 62.266 66.667 34.46 0.00 45.06 2.74
428 429 2.645567 CGAGCTCGTCCGCCATAT 59.354 61.111 27.79 0.00 34.11 1.78
429 430 1.007271 CGAGCTCGTCCGCCATATT 60.007 57.895 27.79 0.00 34.11 1.28
430 431 1.278172 CGAGCTCGTCCGCCATATTG 61.278 60.000 27.79 0.00 34.11 1.90
431 432 1.560860 GAGCTCGTCCGCCATATTGC 61.561 60.000 0.00 0.00 0.00 3.56
432 433 2.607892 GCTCGTCCGCCATATTGCC 61.608 63.158 0.00 0.00 0.00 4.52
433 434 2.279851 TCGTCCGCCATATTGCCG 60.280 61.111 0.00 0.00 0.00 5.69
434 435 2.587753 CGTCCGCCATATTGCCGT 60.588 61.111 0.00 0.00 0.00 5.68
435 436 2.177580 CGTCCGCCATATTGCCGTT 61.178 57.895 0.00 0.00 0.00 4.44
436 437 1.647084 GTCCGCCATATTGCCGTTC 59.353 57.895 0.00 0.00 0.00 3.95
437 438 0.814010 GTCCGCCATATTGCCGTTCT 60.814 55.000 0.00 0.00 0.00 3.01
438 439 0.531974 TCCGCCATATTGCCGTTCTC 60.532 55.000 0.00 0.00 0.00 2.87
439 440 0.813610 CCGCCATATTGCCGTTCTCA 60.814 55.000 0.00 0.00 0.00 3.27
440 441 0.583438 CGCCATATTGCCGTTCTCAG 59.417 55.000 0.00 0.00 0.00 3.35
441 442 0.308993 GCCATATTGCCGTTCTCAGC 59.691 55.000 0.00 0.00 0.00 4.26
442 443 0.947244 CCATATTGCCGTTCTCAGCC 59.053 55.000 0.00 0.00 0.00 4.85
446 447 2.717639 ATTGCCGTTCTCAGCCTAAT 57.282 45.000 0.00 0.00 0.00 1.73
511 512 4.489737 TCTTCCCTTTACTCTCAGGACAA 58.510 43.478 0.00 0.00 30.81 3.18
519 520 7.119846 CCCTTTACTCTCAGGACAATAAAGTTG 59.880 40.741 0.00 0.00 30.91 3.16
520 521 7.361286 CCTTTACTCTCAGGACAATAAAGTTGC 60.361 40.741 0.00 0.00 30.91 4.17
521 522 3.997021 ACTCTCAGGACAATAAAGTTGCG 59.003 43.478 0.00 0.00 0.00 4.85
522 523 3.997021 CTCTCAGGACAATAAAGTTGCGT 59.003 43.478 0.00 0.00 0.00 5.24
523 524 5.142061 TCTCAGGACAATAAAGTTGCGTA 57.858 39.130 0.00 0.00 0.00 4.42
524 525 5.730550 TCTCAGGACAATAAAGTTGCGTAT 58.269 37.500 0.00 0.00 0.00 3.06
525 526 6.869695 TCTCAGGACAATAAAGTTGCGTATA 58.130 36.000 0.00 0.00 0.00 1.47
526 527 6.978659 TCTCAGGACAATAAAGTTGCGTATAG 59.021 38.462 0.00 0.00 0.00 1.31
527 528 6.869695 TCAGGACAATAAAGTTGCGTATAGA 58.130 36.000 0.00 0.00 0.00 1.98
528 529 7.497595 TCAGGACAATAAAGTTGCGTATAGAT 58.502 34.615 0.00 0.00 0.00 1.98
529 530 7.438160 TCAGGACAATAAAGTTGCGTATAGATG 59.562 37.037 0.00 0.00 0.00 2.90
530 531 7.438160 CAGGACAATAAAGTTGCGTATAGATGA 59.562 37.037 0.00 0.00 0.00 2.92
531 532 8.150945 AGGACAATAAAGTTGCGTATAGATGAT 58.849 33.333 0.00 0.00 0.00 2.45
532 533 8.223769 GGACAATAAAGTTGCGTATAGATGATG 58.776 37.037 0.00 0.00 0.00 3.07
533 534 8.662781 ACAATAAAGTTGCGTATAGATGATGT 57.337 30.769 0.00 0.00 0.00 3.06
534 535 9.758651 ACAATAAAGTTGCGTATAGATGATGTA 57.241 29.630 0.00 0.00 0.00 2.29
540 541 9.811995 AAGTTGCGTATAGATGATGTAAACTAA 57.188 29.630 0.00 0.00 0.00 2.24
584 615 7.754475 TGATTGATAATTGGATTTTGTGTCACG 59.246 33.333 0.00 0.00 0.00 4.35
613 644 5.351465 ACTGAACAAGTGTCAGTTAACTGTG 59.649 40.000 29.83 23.08 41.36 3.66
704 761 2.975732 TTCAGTATGGCTCTGAGCAG 57.024 50.000 28.95 12.22 44.75 4.24
738 795 5.026038 TGGTTCCATATTGTAGGTTACCG 57.974 43.478 0.00 0.00 35.15 4.02
746 803 8.632679 TCCATATTGTAGGTTACCGTTTACTAG 58.367 37.037 0.00 0.00 0.00 2.57
771 829 7.977853 AGTAATTTTCATAGCATTTGGAAGCAG 59.022 33.333 0.00 0.00 0.00 4.24
776 834 1.335145 AGCATTTGGAAGCAGCACTT 58.665 45.000 0.00 0.00 42.98 3.16
821 901 2.164624 AGAAGATGTAGCGAGACACCAC 59.835 50.000 0.00 0.00 30.52 4.16
841 921 5.163163 ACCACTTGATGCCATATGACTATGT 60.163 40.000 3.65 0.00 34.12 2.29
850 933 8.701908 ATGCCATATGACTATGTCTCATTTTT 57.298 30.769 3.65 0.00 34.12 1.94
897 980 2.216046 ACTTACTGATGATGCATGCCG 58.784 47.619 16.68 0.00 0.00 5.69
909 992 3.316071 TGCATGCCGTTTGATCATTTT 57.684 38.095 16.68 0.00 0.00 1.82
910 993 3.252400 TGCATGCCGTTTGATCATTTTC 58.748 40.909 16.68 0.00 0.00 2.29
932 1015 4.279671 TCAACACCATGTATGTTTTGGTCC 59.720 41.667 9.31 0.00 41.77 4.46
945 1028 9.316730 GTATGTTTTGGTCCGTTATGATACTAA 57.683 33.333 0.00 0.00 0.00 2.24
966 1049 2.826428 TGCTACAATCCTTCTGATCGC 58.174 47.619 0.00 0.00 31.61 4.58
973 1056 0.391661 TCCTTCTGATCGCACCTTGC 60.392 55.000 0.00 0.00 40.69 4.01
990 1076 3.535561 CTTGCACTTCCATGTAGGTAGG 58.464 50.000 0.00 0.00 39.00 3.18
994 1080 4.161565 TGCACTTCCATGTAGGTAGGTAAG 59.838 45.833 0.00 0.00 39.00 2.34
1014 1100 2.578021 AGACAAGATGGTGGCTAATGGT 59.422 45.455 0.00 0.00 34.05 3.55
1017 1103 2.684881 CAAGATGGTGGCTAATGGTGAC 59.315 50.000 0.00 0.00 0.00 3.67
1075 1161 2.505557 GCCGACGTAGAACCACCG 60.506 66.667 0.00 0.00 0.00 4.94
1104 1190 3.958860 GCTGCTGGAGGTGGTGGT 61.959 66.667 0.00 0.00 0.00 4.16
1105 1191 2.033141 CTGCTGGAGGTGGTGGTG 59.967 66.667 0.00 0.00 0.00 4.17
1106 1192 3.557903 CTGCTGGAGGTGGTGGTGG 62.558 68.421 0.00 0.00 0.00 4.61
1107 1193 3.570212 GCTGGAGGTGGTGGTGGT 61.570 66.667 0.00 0.00 0.00 4.16
1110 1196 3.175710 GGAGGTGGTGGTGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
1137 1223 5.120830 CAGTACAATGCTTCAGTTCTACACC 59.879 44.000 0.00 0.00 0.00 4.16
1255 1341 1.139455 TGTACCGCACCCCTAATTAGC 59.861 52.381 6.99 0.00 0.00 3.09
1266 1352 6.543831 GCACCCCTAATTAGCTTCCATATATG 59.456 42.308 6.99 5.68 0.00 1.78
1267 1353 7.583416 GCACCCCTAATTAGCTTCCATATATGA 60.583 40.741 14.54 0.00 0.00 2.15
1270 1356 9.753674 CCCCTAATTAGCTTCCATATATGAAAA 57.246 33.333 14.54 7.21 0.00 2.29
1332 1418 1.331756 CATAGCAAATGACTGTCGGGC 59.668 52.381 2.98 4.25 0.00 6.13
1337 1423 2.484287 AAATGACTGTCGGGCCCTGG 62.484 60.000 22.43 5.01 0.00 4.45
1350 1436 2.292257 GGGCCCTGGAAAGATTTACCTT 60.292 50.000 17.04 0.00 0.00 3.50
1351 1437 2.760650 GGCCCTGGAAAGATTTACCTTG 59.239 50.000 0.00 0.00 0.00 3.61
1352 1438 3.431415 GCCCTGGAAAGATTTACCTTGT 58.569 45.455 0.00 0.00 0.00 3.16
1353 1439 4.569015 GGCCCTGGAAAGATTTACCTTGTA 60.569 45.833 0.00 0.00 0.00 2.41
1354 1440 4.398358 GCCCTGGAAAGATTTACCTTGTAC 59.602 45.833 0.00 0.00 0.00 2.90
1355 1441 5.806734 GCCCTGGAAAGATTTACCTTGTACT 60.807 44.000 0.00 0.00 0.00 2.73
1356 1442 5.880887 CCCTGGAAAGATTTACCTTGTACTC 59.119 44.000 0.00 0.00 0.00 2.59
1357 1443 5.880887 CCTGGAAAGATTTACCTTGTACTCC 59.119 44.000 0.00 0.00 0.00 3.85
1389 1475 6.147821 ACTGAGATGTTATTGTCGAACCTTTG 59.852 38.462 0.00 0.00 0.00 2.77
1390 1476 5.106712 TGAGATGTTATTGTCGAACCTTTGC 60.107 40.000 0.00 0.00 0.00 3.68
1391 1477 4.759693 AGATGTTATTGTCGAACCTTTGCA 59.240 37.500 0.00 0.00 0.00 4.08
1393 1479 4.854399 TGTTATTGTCGAACCTTTGCAAG 58.146 39.130 0.00 0.00 0.00 4.01
1442 1528 4.714632 ACACTTACTAGCAAAAAGGCTCA 58.285 39.130 0.00 0.00 44.54 4.26
1549 1635 8.887036 AACATTTTCTTCAATTCCCTTAACAC 57.113 30.769 0.00 0.00 0.00 3.32
1580 1666 8.535690 AATACAGGAACTTTTTCTAAGACTCG 57.464 34.615 0.00 0.00 34.60 4.18
1853 2029 0.545171 CCACAGAGATGTGATGCCCT 59.455 55.000 9.86 0.00 42.02 5.19
1906 2466 1.829970 TGCGGTTGATTGGCCACAA 60.830 52.632 3.88 4.40 41.59 3.33
1956 2516 5.994250 AGGTAGCTTTGCAGAATGAGATTA 58.006 37.500 0.00 0.00 39.69 1.75
2051 2614 2.695359 ACGTCGTGGCACATAGATTTT 58.305 42.857 19.09 0.00 44.52 1.82
2118 2683 3.584406 TCAAAGACCTGTGAGATGATGGT 59.416 43.478 0.00 0.00 0.00 3.55
2170 2735 5.687166 TCAATTAGAATCCGTGTTAGGGT 57.313 39.130 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.208052 TGTTCTCAGTGGCCATCTAGC 59.792 52.381 9.72 0.00 0.00 3.42
5 6 2.234661 TGTGTTCTCAGTGGCCATCTAG 59.765 50.000 9.72 6.79 0.00 2.43
6 7 2.256306 TGTGTTCTCAGTGGCCATCTA 58.744 47.619 9.72 0.00 0.00 1.98
7 8 1.059098 TGTGTTCTCAGTGGCCATCT 58.941 50.000 9.72 5.20 0.00 2.90
8 9 2.012673 GATGTGTTCTCAGTGGCCATC 58.987 52.381 9.72 2.38 0.00 3.51
9 10 1.676916 CGATGTGTTCTCAGTGGCCAT 60.677 52.381 9.72 0.00 0.00 4.40
10 11 0.320683 CGATGTGTTCTCAGTGGCCA 60.321 55.000 0.00 0.00 0.00 5.36
11 12 1.639298 GCGATGTGTTCTCAGTGGCC 61.639 60.000 0.00 0.00 0.00 5.36
12 13 1.639298 GGCGATGTGTTCTCAGTGGC 61.639 60.000 0.00 0.00 0.00 5.01
13 14 1.354337 CGGCGATGTGTTCTCAGTGG 61.354 60.000 0.00 0.00 0.00 4.00
14 15 0.667487 ACGGCGATGTGTTCTCAGTG 60.667 55.000 16.62 0.00 0.00 3.66
15 16 0.885879 TACGGCGATGTGTTCTCAGT 59.114 50.000 16.62 0.00 0.00 3.41
16 17 1.269166 GTACGGCGATGTGTTCTCAG 58.731 55.000 16.62 0.00 0.00 3.35
17 18 0.599060 TGTACGGCGATGTGTTCTCA 59.401 50.000 16.62 0.00 0.00 3.27
18 19 1.588404 CATGTACGGCGATGTGTTCTC 59.412 52.381 16.62 0.00 0.00 2.87
19 20 1.640428 CATGTACGGCGATGTGTTCT 58.360 50.000 16.62 0.00 0.00 3.01
20 21 0.650512 CCATGTACGGCGATGTGTTC 59.349 55.000 16.62 0.00 0.00 3.18
21 22 1.366111 GCCATGTACGGCGATGTGTT 61.366 55.000 16.62 0.00 43.52 3.32
22 23 1.813753 GCCATGTACGGCGATGTGT 60.814 57.895 16.62 0.00 43.52 3.72
23 24 3.014036 GCCATGTACGGCGATGTG 58.986 61.111 16.62 6.63 43.52 3.21
30 31 2.202878 CGTCCCAGCCATGTACGG 60.203 66.667 0.00 0.00 32.94 4.02
31 32 2.202878 CCGTCCCAGCCATGTACG 60.203 66.667 0.00 0.00 35.07 3.67
32 33 2.513897 GCCGTCCCAGCCATGTAC 60.514 66.667 0.00 0.00 0.00 2.90
33 34 4.155733 CGCCGTCCCAGCCATGTA 62.156 66.667 0.00 0.00 0.00 2.29
35 36 4.776322 TTCGCCGTCCCAGCCATG 62.776 66.667 0.00 0.00 0.00 3.66
36 37 4.778143 GTTCGCCGTCCCAGCCAT 62.778 66.667 0.00 0.00 0.00 4.40
40 41 3.530910 AACAGGTTCGCCGTCCCAG 62.531 63.158 0.00 0.00 43.66 4.45
41 42 3.524648 GAACAGGTTCGCCGTCCCA 62.525 63.158 0.00 0.00 43.66 4.37
42 43 2.741211 GAACAGGTTCGCCGTCCC 60.741 66.667 0.00 0.00 43.66 4.46
43 44 0.108520 TATGAACAGGTTCGCCGTCC 60.109 55.000 7.58 0.00 42.28 4.79
44 45 1.278238 CTATGAACAGGTTCGCCGTC 58.722 55.000 7.58 0.00 42.28 4.79
45 46 0.108329 CCTATGAACAGGTTCGCCGT 60.108 55.000 7.58 0.00 42.28 5.68
46 47 0.810031 CCCTATGAACAGGTTCGCCG 60.810 60.000 7.58 0.00 42.28 6.46
47 48 0.539986 TCCCTATGAACAGGTTCGCC 59.460 55.000 7.58 0.00 42.28 5.54
48 49 2.614057 CAATCCCTATGAACAGGTTCGC 59.386 50.000 7.58 0.00 42.28 4.70
49 50 3.206150 CCAATCCCTATGAACAGGTTCG 58.794 50.000 7.58 0.00 42.28 3.95
50 51 3.555966 CCCAATCCCTATGAACAGGTTC 58.444 50.000 5.23 5.23 39.91 3.62
51 52 2.244769 CCCCAATCCCTATGAACAGGTT 59.755 50.000 0.00 0.00 33.44 3.50
52 53 1.852965 CCCCAATCCCTATGAACAGGT 59.147 52.381 0.00 0.00 33.44 4.00
53 54 1.479389 GCCCCAATCCCTATGAACAGG 60.479 57.143 0.00 0.00 35.26 4.00
54 55 1.815408 CGCCCCAATCCCTATGAACAG 60.815 57.143 0.00 0.00 0.00 3.16
55 56 0.182537 CGCCCCAATCCCTATGAACA 59.817 55.000 0.00 0.00 0.00 3.18
56 57 0.472471 TCGCCCCAATCCCTATGAAC 59.528 55.000 0.00 0.00 0.00 3.18
57 58 0.472471 GTCGCCCCAATCCCTATGAA 59.528 55.000 0.00 0.00 0.00 2.57
58 59 1.415672 GGTCGCCCCAATCCCTATGA 61.416 60.000 0.00 0.00 0.00 2.15
59 60 1.073199 GGTCGCCCCAATCCCTATG 59.927 63.158 0.00 0.00 0.00 2.23
60 61 3.576232 GGTCGCCCCAATCCCTAT 58.424 61.111 0.00 0.00 0.00 2.57
70 71 0.759436 TATCCTGAGAAGGGTCGCCC 60.759 60.000 6.80 6.80 45.90 6.13
71 72 0.389757 GTATCCTGAGAAGGGTCGCC 59.610 60.000 0.00 0.00 0.00 5.54
72 73 1.112113 TGTATCCTGAGAAGGGTCGC 58.888 55.000 0.00 0.00 0.00 5.19
73 74 2.496070 TGTTGTATCCTGAGAAGGGTCG 59.504 50.000 0.00 0.00 0.00 4.79
74 75 3.769844 TCTGTTGTATCCTGAGAAGGGTC 59.230 47.826 0.00 0.00 0.00 4.46
75 76 3.791320 TCTGTTGTATCCTGAGAAGGGT 58.209 45.455 0.00 0.00 0.00 4.34
76 77 4.701765 CATCTGTTGTATCCTGAGAAGGG 58.298 47.826 0.00 0.00 0.00 3.95
77 78 4.125703 GCATCTGTTGTATCCTGAGAAGG 58.874 47.826 0.00 0.00 0.00 3.46
78 79 5.021033 AGCATCTGTTGTATCCTGAGAAG 57.979 43.478 0.00 0.00 0.00 2.85
79 80 5.426689 AAGCATCTGTTGTATCCTGAGAA 57.573 39.130 0.00 0.00 0.00 2.87
80 81 6.544928 TTAAGCATCTGTTGTATCCTGAGA 57.455 37.500 0.00 0.00 0.00 3.27
81 82 9.499479 AATATTAAGCATCTGTTGTATCCTGAG 57.501 33.333 0.00 0.00 0.00 3.35
82 83 9.494271 GAATATTAAGCATCTGTTGTATCCTGA 57.506 33.333 0.00 0.00 0.00 3.86
83 84 8.725148 GGAATATTAAGCATCTGTTGTATCCTG 58.275 37.037 0.00 0.00 0.00 3.86
84 85 8.439971 TGGAATATTAAGCATCTGTTGTATCCT 58.560 33.333 0.00 0.00 0.00 3.24
85 86 8.621532 TGGAATATTAAGCATCTGTTGTATCC 57.378 34.615 0.00 0.00 0.00 2.59
88 89 9.851686 AGATTGGAATATTAAGCATCTGTTGTA 57.148 29.630 0.00 0.00 0.00 2.41
89 90 8.757982 AGATTGGAATATTAAGCATCTGTTGT 57.242 30.769 0.00 0.00 0.00 3.32
95 96 9.606631 CCCTACTAGATTGGAATATTAAGCATC 57.393 37.037 0.00 0.00 0.00 3.91
96 97 9.338968 TCCCTACTAGATTGGAATATTAAGCAT 57.661 33.333 0.00 0.00 0.00 3.79
97 98 8.736097 TCCCTACTAGATTGGAATATTAAGCA 57.264 34.615 0.00 0.00 0.00 3.91
98 99 9.606631 CATCCCTACTAGATTGGAATATTAAGC 57.393 37.037 0.00 0.00 0.00 3.09
102 103 9.566331 TGATCATCCCTACTAGATTGGAATATT 57.434 33.333 0.00 0.00 0.00 1.28
103 104 9.741198 ATGATCATCCCTACTAGATTGGAATAT 57.259 33.333 1.18 0.00 0.00 1.28
105 106 9.566331 TTATGATCATCCCTACTAGATTGGAAT 57.434 33.333 12.53 0.00 0.00 3.01
106 107 8.972662 TTATGATCATCCCTACTAGATTGGAA 57.027 34.615 12.53 0.00 0.00 3.53
107 108 8.816894 GTTTATGATCATCCCTACTAGATTGGA 58.183 37.037 12.53 0.00 0.00 3.53
108 109 8.043710 GGTTTATGATCATCCCTACTAGATTGG 58.956 40.741 12.53 0.00 0.00 3.16
109 110 8.597167 TGGTTTATGATCATCCCTACTAGATTG 58.403 37.037 12.53 0.00 0.00 2.67
110 111 8.742125 TGGTTTATGATCATCCCTACTAGATT 57.258 34.615 12.53 0.00 0.00 2.40
111 112 8.923838 ATGGTTTATGATCATCCCTACTAGAT 57.076 34.615 12.53 0.00 0.00 1.98
112 113 9.256228 GTATGGTTTATGATCATCCCTACTAGA 57.744 37.037 12.53 0.00 0.00 2.43
113 114 8.478877 GGTATGGTTTATGATCATCCCTACTAG 58.521 40.741 12.53 0.00 0.00 2.57
114 115 8.184249 AGGTATGGTTTATGATCATCCCTACTA 58.816 37.037 12.53 4.89 27.58 1.82
115 116 7.025620 AGGTATGGTTTATGATCATCCCTACT 58.974 38.462 12.53 5.73 27.58 2.57
116 117 7.106239 CAGGTATGGTTTATGATCATCCCTAC 58.894 42.308 12.53 13.62 28.23 3.18
117 118 6.792473 ACAGGTATGGTTTATGATCATCCCTA 59.208 38.462 12.53 2.34 28.23 3.53
118 119 5.612688 ACAGGTATGGTTTATGATCATCCCT 59.387 40.000 12.53 3.32 29.02 4.20
119 120 5.880901 ACAGGTATGGTTTATGATCATCCC 58.119 41.667 12.53 11.31 0.00 3.85
120 121 5.639506 CGACAGGTATGGTTTATGATCATCC 59.360 44.000 12.53 8.24 0.00 3.51
121 122 6.455647 TCGACAGGTATGGTTTATGATCATC 58.544 40.000 12.53 0.00 0.00 2.92
122 123 6.419484 TCGACAGGTATGGTTTATGATCAT 57.581 37.500 13.81 13.81 0.00 2.45
123 124 5.862678 TCGACAGGTATGGTTTATGATCA 57.137 39.130 0.00 0.00 0.00 2.92
124 125 5.573282 CGATCGACAGGTATGGTTTATGATC 59.427 44.000 10.26 0.00 0.00 2.92
125 126 5.470368 CGATCGACAGGTATGGTTTATGAT 58.530 41.667 10.26 0.00 0.00 2.45
126 127 4.261867 CCGATCGACAGGTATGGTTTATGA 60.262 45.833 18.66 0.00 0.00 2.15
127 128 3.987868 CCGATCGACAGGTATGGTTTATG 59.012 47.826 18.66 0.00 0.00 1.90
128 129 3.893200 TCCGATCGACAGGTATGGTTTAT 59.107 43.478 18.66 0.00 0.00 1.40
129 130 3.289836 TCCGATCGACAGGTATGGTTTA 58.710 45.455 18.66 0.00 0.00 2.01
130 131 2.104967 TCCGATCGACAGGTATGGTTT 58.895 47.619 18.66 0.00 0.00 3.27
131 132 1.771565 TCCGATCGACAGGTATGGTT 58.228 50.000 18.66 0.00 0.00 3.67
132 133 1.887198 GATCCGATCGACAGGTATGGT 59.113 52.381 18.66 0.00 0.00 3.55
133 134 2.095008 CAGATCCGATCGACAGGTATGG 60.095 54.545 18.66 0.00 0.00 2.74
134 135 2.814336 TCAGATCCGATCGACAGGTATG 59.186 50.000 18.66 3.94 0.00 2.39
135 136 3.141767 TCAGATCCGATCGACAGGTAT 57.858 47.619 18.66 0.00 0.00 2.73
136 137 2.632987 TCAGATCCGATCGACAGGTA 57.367 50.000 18.66 0.00 0.00 3.08
137 138 1.988293 ATCAGATCCGATCGACAGGT 58.012 50.000 18.66 0.00 0.00 4.00
138 139 2.421775 CCTATCAGATCCGATCGACAGG 59.578 54.545 18.66 10.92 0.00 4.00
139 140 3.339141 TCCTATCAGATCCGATCGACAG 58.661 50.000 18.66 0.00 0.00 3.51
140 141 3.418684 TCCTATCAGATCCGATCGACA 57.581 47.619 18.66 2.45 0.00 4.35
141 142 3.754323 AGTTCCTATCAGATCCGATCGAC 59.246 47.826 18.66 7.72 0.00 4.20
142 143 4.004314 GAGTTCCTATCAGATCCGATCGA 58.996 47.826 18.66 2.91 0.00 3.59
143 144 3.127895 GGAGTTCCTATCAGATCCGATCG 59.872 52.174 8.51 8.51 0.00 3.69
144 145 4.082845 TGGAGTTCCTATCAGATCCGATC 58.917 47.826 0.00 0.00 36.82 3.69
145 146 4.085733 CTGGAGTTCCTATCAGATCCGAT 58.914 47.826 0.00 0.00 36.82 4.18
146 147 3.117474 ACTGGAGTTCCTATCAGATCCGA 60.117 47.826 0.00 0.00 36.82 4.55
147 148 3.226777 ACTGGAGTTCCTATCAGATCCG 58.773 50.000 0.00 0.00 36.82 4.18
148 149 4.219115 TGACTGGAGTTCCTATCAGATCC 58.781 47.826 0.00 0.00 36.82 3.36
149 150 4.261994 GCTGACTGGAGTTCCTATCAGATC 60.262 50.000 24.39 11.88 44.45 2.75
150 151 3.640967 GCTGACTGGAGTTCCTATCAGAT 59.359 47.826 24.39 0.00 44.45 2.90
151 152 3.027412 GCTGACTGGAGTTCCTATCAGA 58.973 50.000 24.39 0.00 44.45 3.27
152 153 2.102252 GGCTGACTGGAGTTCCTATCAG 59.898 54.545 19.55 19.55 44.47 2.90
153 154 2.111384 GGCTGACTGGAGTTCCTATCA 58.889 52.381 0.00 2.83 36.82 2.15
154 155 1.067821 CGGCTGACTGGAGTTCCTATC 59.932 57.143 0.00 0.00 36.82 2.08
155 156 1.115467 CGGCTGACTGGAGTTCCTAT 58.885 55.000 0.00 0.00 36.82 2.57
156 157 1.605058 GCGGCTGACTGGAGTTCCTA 61.605 60.000 0.00 0.00 36.82 2.94
157 158 2.948720 GCGGCTGACTGGAGTTCCT 61.949 63.158 0.00 0.00 36.82 3.36
158 159 2.435059 GCGGCTGACTGGAGTTCC 60.435 66.667 0.00 0.00 0.00 3.62
159 160 2.435059 GGCGGCTGACTGGAGTTC 60.435 66.667 0.00 0.00 0.00 3.01
160 161 2.738213 CTTGGCGGCTGACTGGAGTT 62.738 60.000 11.43 0.00 0.00 3.01
161 162 3.241530 TTGGCGGCTGACTGGAGT 61.242 61.111 11.43 0.00 0.00 3.85
162 163 2.435586 CTTGGCGGCTGACTGGAG 60.436 66.667 11.43 0.00 0.00 3.86
163 164 4.020617 CCTTGGCGGCTGACTGGA 62.021 66.667 11.43 0.00 0.00 3.86
183 184 0.391130 TGTCGAACAGTAGCCATGGC 60.391 55.000 30.12 30.12 42.33 4.40
184 185 1.732259 GTTGTCGAACAGTAGCCATGG 59.268 52.381 7.63 7.63 31.78 3.66
185 186 2.412870 TGTTGTCGAACAGTAGCCATG 58.587 47.619 0.00 0.00 37.15 3.66
186 187 2.831685 TGTTGTCGAACAGTAGCCAT 57.168 45.000 0.00 0.00 37.15 4.40
195 196 3.435262 GGTCGATTTCTGTTGTCGAAC 57.565 47.619 0.00 0.00 44.75 3.95
196 197 2.036733 AGGGTCGATTTCTGTTGTCGAA 59.963 45.455 0.00 0.00 44.75 3.71
197 198 1.616865 AGGGTCGATTTCTGTTGTCGA 59.383 47.619 0.00 0.00 41.53 4.20
198 199 1.726791 CAGGGTCGATTTCTGTTGTCG 59.273 52.381 0.00 0.00 36.75 4.35
199 200 2.480419 CACAGGGTCGATTTCTGTTGTC 59.520 50.000 13.19 0.00 39.43 3.18
200 201 2.104111 TCACAGGGTCGATTTCTGTTGT 59.896 45.455 13.19 0.00 39.43 3.32
201 202 2.766313 TCACAGGGTCGATTTCTGTTG 58.234 47.619 13.19 10.15 39.43 3.33
202 203 3.244561 ACATCACAGGGTCGATTTCTGTT 60.245 43.478 13.19 1.53 39.43 3.16
203 204 2.303022 ACATCACAGGGTCGATTTCTGT 59.697 45.455 10.95 10.95 41.81 3.41
204 205 2.932614 GACATCACAGGGTCGATTTCTG 59.067 50.000 9.91 9.91 34.91 3.02
205 206 3.252974 GACATCACAGGGTCGATTTCT 57.747 47.619 0.00 0.00 0.00 2.52
212 213 5.236478 CCATTTAATACGACATCACAGGGTC 59.764 44.000 0.00 0.00 0.00 4.46
213 214 5.123227 CCATTTAATACGACATCACAGGGT 58.877 41.667 0.00 0.00 0.00 4.34
214 215 4.024048 GCCATTTAATACGACATCACAGGG 60.024 45.833 0.00 0.00 0.00 4.45
215 216 4.024048 GGCCATTTAATACGACATCACAGG 60.024 45.833 0.00 0.00 0.00 4.00
216 217 4.024048 GGGCCATTTAATACGACATCACAG 60.024 45.833 4.39 0.00 0.00 3.66
217 218 3.880490 GGGCCATTTAATACGACATCACA 59.120 43.478 4.39 0.00 0.00 3.58
218 219 3.252458 GGGGCCATTTAATACGACATCAC 59.748 47.826 4.39 0.00 0.00 3.06
219 220 3.117851 TGGGGCCATTTAATACGACATCA 60.118 43.478 4.39 0.00 0.00 3.07
220 221 3.252458 GTGGGGCCATTTAATACGACATC 59.748 47.826 4.39 0.00 0.00 3.06
221 222 3.219281 GTGGGGCCATTTAATACGACAT 58.781 45.455 4.39 0.00 0.00 3.06
222 223 2.645802 GTGGGGCCATTTAATACGACA 58.354 47.619 4.39 0.00 0.00 4.35
223 224 1.951602 GGTGGGGCCATTTAATACGAC 59.048 52.381 4.39 0.00 37.17 4.34
224 225 1.564818 TGGTGGGGCCATTTAATACGA 59.435 47.619 4.39 0.00 43.61 3.43
225 226 2.060050 TGGTGGGGCCATTTAATACG 57.940 50.000 4.39 0.00 43.61 3.06
234 235 2.123511 CAACAAGTGGTGGGGCCA 60.124 61.111 4.39 0.00 46.95 5.36
243 244 1.831389 CGGCGTCAGTCCAACAAGTG 61.831 60.000 0.00 0.00 0.00 3.16
244 245 1.594293 CGGCGTCAGTCCAACAAGT 60.594 57.895 0.00 0.00 0.00 3.16
245 246 1.594293 ACGGCGTCAGTCCAACAAG 60.594 57.895 6.77 0.00 0.00 3.16
246 247 1.885388 CACGGCGTCAGTCCAACAA 60.885 57.895 10.85 0.00 0.00 2.83
247 248 2.094757 ATCACGGCGTCAGTCCAACA 62.095 55.000 10.85 0.00 0.00 3.33
248 249 0.949105 AATCACGGCGTCAGTCCAAC 60.949 55.000 10.85 0.00 0.00 3.77
249 250 0.669318 GAATCACGGCGTCAGTCCAA 60.669 55.000 10.85 0.00 0.00 3.53
250 251 1.080093 GAATCACGGCGTCAGTCCA 60.080 57.895 10.85 0.00 0.00 4.02
251 252 2.158959 CGAATCACGGCGTCAGTCC 61.159 63.158 10.85 0.00 38.46 3.85
252 253 3.374330 CGAATCACGGCGTCAGTC 58.626 61.111 10.85 5.05 38.46 3.51
259 260 3.186047 CCGTCCACGAATCACGGC 61.186 66.667 0.00 0.00 46.08 5.68
262 263 0.788391 GTGTTCCGTCCACGAATCAC 59.212 55.000 0.00 3.23 43.02 3.06
263 264 0.320073 GGTGTTCCGTCCACGAATCA 60.320 55.000 0.00 0.00 43.02 2.57
264 265 0.037605 AGGTGTTCCGTCCACGAATC 60.038 55.000 0.00 0.00 43.02 2.52
265 266 0.395312 AAGGTGTTCCGTCCACGAAT 59.605 50.000 0.00 0.00 43.02 3.34
266 267 0.531090 CAAGGTGTTCCGTCCACGAA 60.531 55.000 0.00 0.00 43.02 3.85
267 268 1.068417 CAAGGTGTTCCGTCCACGA 59.932 57.895 0.00 0.00 43.02 4.35
268 269 0.812412 AACAAGGTGTTCCGTCCACG 60.812 55.000 0.00 0.00 35.27 4.94
269 270 3.089788 AACAAGGTGTTCCGTCCAC 57.910 52.632 0.00 0.00 35.27 4.02
277 278 1.071228 GGTCCTACCGAACAAGGTGTT 59.929 52.381 0.00 0.00 45.54 3.32
278 279 0.683412 GGTCCTACCGAACAAGGTGT 59.317 55.000 0.00 0.00 45.54 4.16
279 280 0.974383 AGGTCCTACCGAACAAGGTG 59.026 55.000 0.00 0.00 44.90 4.00
280 281 0.974383 CAGGTCCTACCGAACAAGGT 59.026 55.000 0.00 0.00 44.90 3.50
281 282 0.974383 ACAGGTCCTACCGAACAAGG 59.026 55.000 0.00 0.00 44.90 3.61
282 283 2.094338 GGTACAGGTCCTACCGAACAAG 60.094 54.545 0.00 0.00 44.90 3.16
283 284 1.895131 GGTACAGGTCCTACCGAACAA 59.105 52.381 0.00 0.00 44.90 2.83
284 285 1.203038 TGGTACAGGTCCTACCGAACA 60.203 52.381 6.38 0.00 44.90 3.18
285 286 1.203287 GTGGTACAGGTCCTACCGAAC 59.797 57.143 6.38 0.00 44.90 3.95
286 287 1.549203 GTGGTACAGGTCCTACCGAA 58.451 55.000 6.38 0.00 44.90 4.30
287 288 0.323725 GGTGGTACAGGTCCTACCGA 60.324 60.000 6.38 0.00 44.90 4.69
288 289 0.612732 TGGTGGTACAGGTCCTACCG 60.613 60.000 6.38 0.00 44.90 4.02
289 290 1.192428 CTGGTGGTACAGGTCCTACC 58.808 60.000 4.05 4.05 41.80 3.18
290 291 1.934410 ACTGGTGGTACAGGTCCTAC 58.066 55.000 0.00 0.00 41.80 3.18
300 301 1.138069 CCGCATGATGTACTGGTGGTA 59.862 52.381 0.00 0.00 0.00 3.25
301 302 0.107703 CCGCATGATGTACTGGTGGT 60.108 55.000 0.00 0.00 0.00 4.16
302 303 0.107703 ACCGCATGATGTACTGGTGG 60.108 55.000 0.00 0.00 35.32 4.61
303 304 1.290203 GACCGCATGATGTACTGGTG 58.710 55.000 0.00 0.00 0.00 4.17
304 305 0.178068 GGACCGCATGATGTACTGGT 59.822 55.000 0.00 0.00 0.00 4.00
305 306 0.465705 AGGACCGCATGATGTACTGG 59.534 55.000 0.00 0.00 0.00 4.00
306 307 1.575244 CAGGACCGCATGATGTACTG 58.425 55.000 11.51 11.51 37.11 2.74
307 308 0.465705 CCAGGACCGCATGATGTACT 59.534 55.000 0.00 0.00 0.00 2.73
308 309 0.178068 ACCAGGACCGCATGATGTAC 59.822 55.000 0.00 0.00 0.00 2.90
309 310 1.783071 TACCAGGACCGCATGATGTA 58.217 50.000 0.00 0.00 0.00 2.29
310 311 1.131638 ATACCAGGACCGCATGATGT 58.868 50.000 0.00 0.00 0.00 3.06
311 312 1.202687 ACATACCAGGACCGCATGATG 60.203 52.381 0.00 0.00 0.00 3.07
312 313 1.070758 GACATACCAGGACCGCATGAT 59.929 52.381 0.00 0.00 0.00 2.45
313 314 0.464036 GACATACCAGGACCGCATGA 59.536 55.000 0.00 0.00 0.00 3.07
314 315 0.465705 AGACATACCAGGACCGCATG 59.534 55.000 0.00 0.00 0.00 4.06
315 316 0.465705 CAGACATACCAGGACCGCAT 59.534 55.000 0.00 0.00 0.00 4.73
316 317 1.897423 CAGACATACCAGGACCGCA 59.103 57.895 0.00 0.00 0.00 5.69
317 318 1.521681 GCAGACATACCAGGACCGC 60.522 63.158 0.00 0.00 0.00 5.68
318 319 1.144057 GGCAGACATACCAGGACCG 59.856 63.158 0.00 0.00 0.00 4.79
319 320 1.144057 CGGCAGACATACCAGGACC 59.856 63.158 0.00 0.00 0.00 4.46
320 321 0.179108 GACGGCAGACATACCAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
321 322 0.324368 AGACGGCAGACATACCAGGA 60.324 55.000 0.00 0.00 0.00 3.86
322 323 0.103208 GAGACGGCAGACATACCAGG 59.897 60.000 0.00 0.00 0.00 4.45
323 324 0.103208 GGAGACGGCAGACATACCAG 59.897 60.000 0.00 0.00 0.00 4.00
324 325 0.324368 AGGAGACGGCAGACATACCA 60.324 55.000 0.00 0.00 0.00 3.25
325 326 0.103208 CAGGAGACGGCAGACATACC 59.897 60.000 0.00 0.00 0.00 2.73
326 327 3.650409 CAGGAGACGGCAGACATAC 57.350 57.895 0.00 0.00 0.00 2.39
335 336 0.669077 AGTATTAGCGCAGGAGACGG 59.331 55.000 11.47 0.00 0.00 4.79
336 337 2.662249 CGTAGTATTAGCGCAGGAGACG 60.662 54.545 11.47 6.53 0.00 4.18
337 338 2.547211 TCGTAGTATTAGCGCAGGAGAC 59.453 50.000 11.47 1.87 0.00 3.36
338 339 2.842457 TCGTAGTATTAGCGCAGGAGA 58.158 47.619 11.47 0.00 0.00 3.71
339 340 3.003482 AGTTCGTAGTATTAGCGCAGGAG 59.997 47.826 11.47 0.00 0.00 3.69
340 341 2.947652 AGTTCGTAGTATTAGCGCAGGA 59.052 45.455 11.47 0.00 0.00 3.86
341 342 3.043586 CAGTTCGTAGTATTAGCGCAGG 58.956 50.000 11.47 0.00 0.00 4.85
342 343 2.468040 GCAGTTCGTAGTATTAGCGCAG 59.532 50.000 11.47 0.00 0.00 5.18
343 344 2.098607 AGCAGTTCGTAGTATTAGCGCA 59.901 45.455 11.47 0.00 0.00 6.09
344 345 2.728922 AGCAGTTCGTAGTATTAGCGC 58.271 47.619 0.00 0.00 0.00 5.92
345 346 3.907194 GCTAGCAGTTCGTAGTATTAGCG 59.093 47.826 10.63 0.00 0.00 4.26
346 347 4.912766 CAGCTAGCAGTTCGTAGTATTAGC 59.087 45.833 18.83 4.60 34.11 3.09
347 348 4.912766 GCAGCTAGCAGTTCGTAGTATTAG 59.087 45.833 18.83 0.00 44.79 1.73
348 349 4.856664 GCAGCTAGCAGTTCGTAGTATTA 58.143 43.478 18.83 0.00 44.79 0.98
349 350 3.707793 GCAGCTAGCAGTTCGTAGTATT 58.292 45.455 18.83 0.00 44.79 1.89
350 351 3.357166 GCAGCTAGCAGTTCGTAGTAT 57.643 47.619 18.83 0.00 44.79 2.12
351 352 2.846039 GCAGCTAGCAGTTCGTAGTA 57.154 50.000 18.83 0.00 44.79 1.82
352 353 3.723554 GCAGCTAGCAGTTCGTAGT 57.276 52.632 18.83 0.00 44.79 2.73
363 364 3.649277 AAGGTCGCGTGGCAGCTAG 62.649 63.158 5.77 0.00 34.40 3.42
364 365 3.691342 AAGGTCGCGTGGCAGCTA 61.691 61.111 5.77 0.00 34.40 3.32
370 371 3.958147 ATGGAGCAAGGTCGCGTGG 62.958 63.158 5.77 0.00 36.85 4.94
371 372 1.970917 GAATGGAGCAAGGTCGCGTG 61.971 60.000 5.77 0.00 36.85 5.34
372 373 1.741770 GAATGGAGCAAGGTCGCGT 60.742 57.895 5.77 0.00 36.85 6.01
373 374 2.802667 CGAATGGAGCAAGGTCGCG 61.803 63.158 0.00 0.00 36.85 5.87
374 375 1.696832 GACGAATGGAGCAAGGTCGC 61.697 60.000 0.00 0.00 35.15 5.19
375 376 1.084370 GGACGAATGGAGCAAGGTCG 61.084 60.000 0.00 0.00 37.71 4.79
376 377 1.084370 CGGACGAATGGAGCAAGGTC 61.084 60.000 0.00 0.00 0.00 3.85
377 378 1.079127 CGGACGAATGGAGCAAGGT 60.079 57.895 0.00 0.00 0.00 3.50
378 379 2.464459 GCGGACGAATGGAGCAAGG 61.464 63.158 0.00 0.00 0.00 3.61
379 380 2.802667 CGCGGACGAATGGAGCAAG 61.803 63.158 0.00 0.00 43.93 4.01
380 381 2.215465 TACGCGGACGAATGGAGCAA 62.215 55.000 12.47 0.00 43.93 3.91
381 382 2.702788 TACGCGGACGAATGGAGCA 61.703 57.895 12.47 0.00 43.93 4.26
382 383 2.103538 TACGCGGACGAATGGAGC 59.896 61.111 12.47 0.00 43.93 4.70
383 384 1.588139 GGTACGCGGACGAATGGAG 60.588 63.158 16.72 0.00 43.93 3.86
384 385 2.274232 CTGGTACGCGGACGAATGGA 62.274 60.000 16.72 0.00 43.93 3.41
385 386 1.876714 CTGGTACGCGGACGAATGG 60.877 63.158 16.72 0.00 43.93 3.16
386 387 1.876714 CCTGGTACGCGGACGAATG 60.877 63.158 16.72 1.48 43.93 2.67
387 388 2.001361 CTCCTGGTACGCGGACGAAT 62.001 60.000 16.72 0.00 43.93 3.34
388 389 2.672651 TCCTGGTACGCGGACGAA 60.673 61.111 16.72 5.24 43.93 3.85
389 390 3.129502 CTCCTGGTACGCGGACGA 61.130 66.667 16.72 11.38 43.93 4.20
391 392 3.701604 CTGCTCCTGGTACGCGGAC 62.702 68.421 14.70 14.70 31.83 4.79
392 393 3.449227 CTGCTCCTGGTACGCGGA 61.449 66.667 12.47 0.00 31.83 5.54
393 394 4.514577 CCTGCTCCTGGTACGCGG 62.515 72.222 12.47 0.60 0.00 6.46
396 397 3.417275 CTCGCCTGCTCCTGGTACG 62.417 68.421 0.00 0.00 0.00 3.67
397 398 2.496817 CTCGCCTGCTCCTGGTAC 59.503 66.667 0.00 0.00 0.00 3.34
398 399 3.461773 GCTCGCCTGCTCCTGGTA 61.462 66.667 0.00 0.00 0.00 3.25
411 412 1.007271 AATATGGCGGACGAGCTCG 60.007 57.895 33.45 33.45 46.33 5.03
412 413 1.560860 GCAATATGGCGGACGAGCTC 61.561 60.000 2.73 2.73 37.29 4.09
413 414 1.595382 GCAATATGGCGGACGAGCT 60.595 57.895 0.00 0.00 37.29 4.09
414 415 2.607892 GGCAATATGGCGGACGAGC 61.608 63.158 0.00 0.00 31.79 5.03
415 416 3.642755 GGCAATATGGCGGACGAG 58.357 61.111 0.00 0.00 31.79 4.18
422 423 0.308993 GCTGAGAACGGCAATATGGC 59.691 55.000 0.00 0.00 46.56 4.40
430 431 2.017752 GCATTAGGCTGAGAACGGC 58.982 57.895 0.00 0.00 46.60 5.68
466 467 9.588096 AAGAACAAATTTGATAAGTACTCCCTT 57.412 29.630 24.64 6.35 0.00 3.95
502 503 6.978659 TCTATACGCAACTTTATTGTCCTGAG 59.021 38.462 0.00 0.00 0.00 3.35
524 525 9.213777 ACCAGGAGAATTAGTTTACATCATCTA 57.786 33.333 0.00 0.00 0.00 1.98
525 526 7.989741 CACCAGGAGAATTAGTTTACATCATCT 59.010 37.037 0.00 0.00 0.00 2.90
526 527 7.770897 ACACCAGGAGAATTAGTTTACATCATC 59.229 37.037 0.00 0.00 0.00 2.92
527 528 7.633789 ACACCAGGAGAATTAGTTTACATCAT 58.366 34.615 0.00 0.00 0.00 2.45
528 529 7.016153 ACACCAGGAGAATTAGTTTACATCA 57.984 36.000 0.00 0.00 0.00 3.07
529 530 9.614792 AATACACCAGGAGAATTAGTTTACATC 57.385 33.333 0.00 0.00 0.00 3.06
530 531 9.396022 CAATACACCAGGAGAATTAGTTTACAT 57.604 33.333 0.00 0.00 0.00 2.29
531 532 8.598916 TCAATACACCAGGAGAATTAGTTTACA 58.401 33.333 0.00 0.00 0.00 2.41
532 533 9.614792 ATCAATACACCAGGAGAATTAGTTTAC 57.385 33.333 0.00 0.00 0.00 2.01
533 534 9.613428 CATCAATACACCAGGAGAATTAGTTTA 57.387 33.333 0.00 0.00 0.00 2.01
534 535 8.328758 TCATCAATACACCAGGAGAATTAGTTT 58.671 33.333 0.00 0.00 0.00 2.66
535 536 7.861629 TCATCAATACACCAGGAGAATTAGTT 58.138 34.615 0.00 0.00 0.00 2.24
536 537 7.437713 TCATCAATACACCAGGAGAATTAGT 57.562 36.000 0.00 0.00 0.00 2.24
537 538 8.781196 CAATCATCAATACACCAGGAGAATTAG 58.219 37.037 0.00 0.00 0.00 1.73
540 541 6.903516 TCAATCATCAATACACCAGGAGAAT 58.096 36.000 0.00 0.00 0.00 2.40
704 761 6.147000 ACAATATGGAACCAAAACGAAAATGC 59.853 34.615 0.00 0.00 0.00 3.56
746 803 7.254218 GCTGCTTCCAAATGCTATGAAAATTAC 60.254 37.037 0.00 0.00 0.00 1.89
767 825 4.923415 AGAAGGGTAAATAAAGTGCTGCT 58.077 39.130 0.00 0.00 0.00 4.24
771 829 7.822822 TGACTAAGAGAAGGGTAAATAAAGTGC 59.177 37.037 0.00 0.00 0.00 4.40
776 834 9.096823 TCTGTTGACTAAGAGAAGGGTAAATAA 57.903 33.333 0.00 0.00 33.71 1.40
850 933 8.598202 TGTTGGAGAAGTACACAGGTATATAA 57.402 34.615 0.00 0.00 0.00 0.98
897 980 8.649841 CATACATGGTGTTGAAAATGATCAAAC 58.350 33.333 0.00 0.00 40.76 2.93
932 1015 8.988064 AGGATTGTAGCATTAGTATCATAACG 57.012 34.615 0.00 0.00 0.00 3.18
945 1028 3.181462 TGCGATCAGAAGGATTGTAGCAT 60.181 43.478 0.00 0.00 39.30 3.79
966 1049 2.086869 CCTACATGGAAGTGCAAGGTG 58.913 52.381 0.00 0.00 38.35 4.00
973 1056 5.421056 TGTCTTACCTACCTACATGGAAGTG 59.579 44.000 0.00 0.00 39.71 3.16
990 1076 4.576463 CCATTAGCCACCATCTTGTCTTAC 59.424 45.833 0.00 0.00 0.00 2.34
994 1080 2.684881 CACCATTAGCCACCATCTTGTC 59.315 50.000 0.00 0.00 0.00 3.18
1014 1100 2.031012 CCTCTTGCAGGTGCGTCA 59.969 61.111 0.00 0.00 45.83 4.35
1017 1103 2.435586 CTCCCTCTTGCAGGTGCG 60.436 66.667 0.00 0.00 45.83 5.34
1054 1140 2.879462 GGTTCTACGTCGGCGCAG 60.879 66.667 10.50 6.23 42.83 5.18
1060 1146 1.443194 CACCGGTGGTTCTACGTCG 60.443 63.158 27.57 0.00 31.02 5.12
1075 1161 4.962836 AGCAGCAGCACCACCACC 62.963 66.667 3.17 0.00 45.49 4.61
1082 1168 3.054503 CACCTCCAGCAGCAGCAC 61.055 66.667 3.17 0.00 45.49 4.40
1086 1172 3.957586 CCACCACCTCCAGCAGCA 61.958 66.667 0.00 0.00 0.00 4.41
1105 1191 0.609131 AGCATTGTACTGGCACCACC 60.609 55.000 0.00 0.00 39.84 4.61
1106 1192 1.200020 GAAGCATTGTACTGGCACCAC 59.800 52.381 0.00 0.00 0.00 4.16
1107 1193 1.202867 TGAAGCATTGTACTGGCACCA 60.203 47.619 0.00 0.00 0.00 4.17
1110 1196 2.566833 ACTGAAGCATTGTACTGGCA 57.433 45.000 0.00 0.00 0.00 4.92
1270 1356 7.649705 CGCTATTCATAGACACATAAACTCAGT 59.350 37.037 0.00 0.00 32.05 3.41
1332 1418 5.816682 AGTACAAGGTAAATCTTTCCAGGG 58.183 41.667 0.00 0.00 0.00 4.45
1389 1475 3.502191 TGACAAGACAAAACACCTTGC 57.498 42.857 0.00 0.00 40.51 4.01
1390 1476 5.868801 ACAAATGACAAGACAAAACACCTTG 59.131 36.000 0.00 0.00 42.04 3.61
1391 1477 6.036577 ACAAATGACAAGACAAAACACCTT 57.963 33.333 0.00 0.00 0.00 3.50
1393 1479 6.099341 AGAACAAATGACAAGACAAAACACC 58.901 36.000 0.00 0.00 0.00 4.16
1395 1481 9.134734 GTAAAGAACAAATGACAAGACAAAACA 57.865 29.630 0.00 0.00 0.00 2.83
1396 1482 9.134734 TGTAAAGAACAAATGACAAGACAAAAC 57.865 29.630 0.00 0.00 34.29 2.43
1397 1483 9.134734 GTGTAAAGAACAAATGACAAGACAAAA 57.865 29.630 0.00 0.00 40.63 2.44
1499 1585 4.804108 CCAAAATGTTATCGGTGAAGCAA 58.196 39.130 0.00 0.00 0.00 3.91
1777 1885 5.204409 TGAGCATTGCTGAACAAATTCTT 57.796 34.783 17.51 0.00 42.86 2.52
1865 2041 0.384725 CAAGCACCGAAGCGACTTTG 60.385 55.000 0.00 0.00 40.15 2.77
1906 2466 3.066203 CGGGTTGCTACAAGTGTTCTTTT 59.934 43.478 0.00 0.00 0.00 2.27
1956 2516 7.226720 CCTGAAACCACACGAAAGCTAATATAT 59.773 37.037 0.00 0.00 0.00 0.86
2051 2614 6.367374 TGGAGAGACAATTACACCATACAA 57.633 37.500 0.00 0.00 0.00 2.41
2118 2683 3.485463 AGATTTGTCCCGAACAGAACA 57.515 42.857 0.00 0.00 39.58 3.18
2170 2735 6.889177 TCCATGTGCCAGTTCAAAATATCTAA 59.111 34.615 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.