>input_sequence_85831
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---------------------------------------------ATGGTGGCTAATGGTGACGCACCTGCAAGAGGGAG
TGCAGCTGCAGCTGCAAGCCTGCGCCGACGTAGAACCACCGGTGGTGGTGCTGCTGCTGGAGGTGGTGGTGGTGGTGCCA
GTACAATGCTTCAGTTCTACACCGATGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTCTGATCATGAGCATAGGG
TTTATTGCCGTCGTTGCCGTACTCCATGTTTTCGGCAAGCTGTACCGCACCCCTAATTAG--------------------
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>chr3B_1_TraesCS3B01G234900
GTCGGCTAGATGGCCACTGAGAACACATCGCCGTACATGGCTGGGACGGCGAACCTGTTCATAGGGATTGGGGCGACCCT
TCTCAGGATACAACAGATGCTTAATATTCCAATCTAGTAGGGATGATCATAAACCATACCTGTCGATCGGATCTGATAGG
AACTCCAGTCAGCCGCCAAGGCCGCCATGGCTACTGTTCGACAACAGAAATCGACCCTGTGATGTCGTATTAAATGGCCC
CACCACTTGTTGGACTGACGCCGTGATTCGTGGACGGAACACCTTGTTCGGTAGGACCTGTACCACCAGTACATCATGCG
GTCCTGGTATGTCTGCCGTCTCCTGCGCTAATACTACGAACTGCTAGCTGCCACGCGACCTTGCTCCATTCGTCCGCGTA
CCAGGAGCAGGCGAGCTCGTCCGCCATATTGCCGTTCTCAGCCTAATGCTCTTATATTTATTTACAAAGGGAGTACTTAT
CAAATTTGTTCTTCCCTTTACTCTCAGGACAATAAAGTTGCGTATAGATGATGTAAACTAA-------------------
-----------TTCTCCTGGTGTATTGATGATTGATAATTGGATTTTGTGTCACGCCACACTGAACAAGTGTCAGTTAAC
TGTGGAACAAATTCAGTCGTTTGTTGAT--------------------------AAAAAAATCAGTATTTTATTCTTACA
AAATTATTGGATTCGACAAAATTCAGTATGGCTCTGAGCAGCATTTTCGTTTTGGTTCCATATTGTAGGTTACCGTTTAC
TAGTAATT-TTCATAGCATTTGGAAGCAGCACTTTATTTACCCT----------------------TCTCTTAGTCAACA
GAAGATGTAGCGAGACACCACTTGATGCCATATGACTATGT---CTCATTTTTTATATACCTGTGTACTTCTCCAACAAA
CTTACTGATGATGCATGCCGTTTGATCATTTTCAACACCATGTATGTTTTGGTCCGTTATGATACTAATGCTACAATCCT
TCTGATCGCACCTTGCACTTC---CATGTAGGTAGGTAAGACAAGATGGTGGCTAATGGTGACGCACCTGCAAGAGGGAG
TGCAGCTGCAGCTGCAAGCCTGCGCCGACGTAGAACCACCGGTGGTGGTGCTGCTGCTGGAGGTGGTGGTGGTGGTGCCA
GTACAATGCTTCAGTTCTACACCGATGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTCTGATCATGAGCATAGGG
TTTATTGCCGTCGTTGCCGTACTCCATGTTTTCGGCAAGCTGTACCGCACCCCTAATTAGCTTCCATATATGAAAACTGA
GTTTATGTGTCTATGAATAGCGAAGTCGTAGACTTTGCATAGCAAATGACTGTCGGGCCCTGGAAAGATTTACCTTGTAC
TCCTATAATACTGAGATGTTATTGTCGAACCTTTGCAAGGTGTTTTGTCTTGTCATTTGTTCTTTACACTTACTAGCAAA
AAGGCTCATGCGTTGCAACGGGAGAAAAAAAATCATTATCTTTAAAGACCATGACAACATTTTGTTGCTTCACCGATAAC
ATTTTGGCGAACATTTTCTTCAATTCCCTTAACACTTTTTAATACAGGAACTTTTTCTAAGACTCGTGAACATTTTTTTA
TTTTCCAAAC--TTTTT-TTCCAAAATTGCGAATATTTTTTGAATATGCA-------------TATTTTTGAATCCACAA
AGATATTATGATTTACAAAATTTTAGTCTTAAAGTCATATTATTTGGAATTTTCAGCTCAATTAGAATATATTTGAGTGG
ATATTTTTCTTTTTTTTTCTATT-----TTA-TTTTTGAAAATTAAGAATTTGTTCAGCAATGCTCAGTGCT--------
--------------------------------------TCCAAGGCCT---------AACCGGCCGAACAACTTTG----
---------CCACAGAGATGTGATGCCCTAAAGGCGTCGACAAAGTCG--------------------------------
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-------------------------------CTTCGGTGCTTGCGGTGCGG-TTGATTGGCCACAAAAAGAACACTTGTA
GCAACCCGCCATAGGTAGCTTTGCAGAATGAGATTATATATTAGCTTTCGTGTGGTTTCAGGATGCATGTTTAGCTTGCC
ATCATTTGTT---TAAAAAAGTTGCTATTCTAAACGTCGTGGCACATAGATTTTTGTATGGTGTAA--TTGTCTCTCCAA
AGACCTGGACTCATTGATATTCAAAGACCTGTGAGATGATGGTGTTCTGTTCGGGACAAATCTTGCTTTTAATCAATTAG
AATCCGTGTTAGGGTT-AGATATTTTGAACTGGCACATGGAGCAATAATCCTGTCCATTTTCATTTATCCTGCAATGGAA
AAAAG-GAACATAACGGGTAT-
>chr3D_444
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-------------------------------------------TAACGCTCTTATATTTATTTACAGAGGGAGTACTTAT
CGAATTTGTTCTTCCCTTTACTGTCAGGACACTAAAGTT-------------------TAC-------------------
-----------TTCTCCTGGTGTATTGTTGATTAATAATTGGATTTTTTGTCACCCCACACTGAACAAGTGTCAGTTAAC
TGTCGAACAAATTCGGTTGTTTGTTCTGACAACACATCACACAATTTGTCGAT---AAAATTCAGTATTTTATTCTGACA
AAATTATTGGGTTTGACAAAATTCAGTATGGCTCTGATCAACATTTTCGTTTTGGTTCCATATTGTAGGTTACCT-----
-------------TAGCATTTGGATGCAACACTGTATTACCCTTATCTTAGTCAACACCGTATTCGTCTCTTAGTCAACA
GAAGATGTAGCGAGACACCATTTGATGGCATATGACTGTGCTTGCTCATTTTCTATATACCTTTGTACTTCTCCAACAAA
CTTACTGATGATGCATGCCATTTGATCATTTGGAACACCATGTATGTTTTGGTCTGTTATGATACTAGTGCTACAATCCT
TCTAATCGAACTACCTACTTC---CATGTAGGTAGATAAAAGAAGATGGTGGCTAATGGCGATGCACCTGCAAGAGGGAG
TGCAGCTGCAGCTGCAAGCTTGCGCAGACGTAGAACCACCAGTGGTGCTGCCGCTGCTGGAGGTGGTGGC---GGCGCCA
GTACAATGCTTCAGTTCTACACTGATGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTCTGATCATGAGCATAGGG
TTTATTGCCGTCGTTGCCGTACTCCATGTTTTCGGCAAGCTGTACCGCACCCCTAATTAGGTTCCATATATACAACCTGA
GTTTATGTGTCTATGAATAGCGAAGTCGTAGACTTTGCATAGGAAATGACTGTCGGGTCCTGAAAAGATTTACCT-----
---TATAATACTGAGATGATATTGTCGAATCTTTTGCAAGGTGTTTGTCTTGTCATTTGTTCTTTACACTTA--------
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>chr3A_445
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--------------------------------------------AACGCTCTTATATTTATTTACAGAGGGAGTACTTAT
CAAATTTGTTCCTCCCTTTACTGTCATGACACTAAAGTT-------------------TACTAAAAATGGCGTAGAGATG
ATGTAAACTAATTCCCCTGGTGTATTGATGATTGATAATTGGATTTTGTGTCACCCCACACTGAACAAGTGTCAGTTAAC
TGTTGAACAAATTCAGTCGTTTGTTCTGACAACACATAACACAATTTGTTGATAAAAAAATTCAGTATTTTATTCTTACA
AAATTATCGGATTCGACAAAATTCAGTACGACTCTGAGCAACATTTTCGTTTTGGTTCCATATTGTAGGTAACCTTTTAC
TACTAATTTTTCATAGCATTTGGATGCAACACTGTATTTACCCT----------------------TCTCTTAGTCAACA
GAAGATGTAGCGAGACACCATCTGATGCCATATGACTATGCTTGCTCATTTTCTATATACCTGTGTACTTCTCCAACAAA
CTTACTGATGATGC----CATTTGATCATTTGGAACACCATGTATGTTTTGGTCTGTTATGATACTAGTGCTACAATCCT
TCTGATCGAACCTTGTACTTATTACATGTAGGTAGATAAAACAAGATGGTGGCTAATGGCGATGCACCTGCAAGAGGGAG
TGCAGCTGCAGCTGCAAGCTTGCGCAGACGTAGAACCACCAGTGGTGCTGCCGCTGCTGGAGGTGGTGGC---GGCGCCA
GTACAATGCTTCAGTTCTATACTGATGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTCTGATCATGAGCATAGGG
TTTATTGCCGTCGTTGCCGTACTCCATGTTTTCGGCAAGCTGTACCGCACCCCTAATTAGGTTCCATATATACAAGCTGA
GTTTATGTGTCTATGAACAGCGAAGTCGTAGACTTTGCATAGCAAATGACTGTCGGGTCCTGAAAAGATTTACCT-----
---TATAATACTGAGATGTTATTGTCGAATCATTTGCAAGCTGTTTGTCTTGTCGTTTGTTCTTTACACTCACT------
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>chr6B_1423
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-------------------------------------------------------------------ACTTACTAGCAAA
AAGGCCCGTGCGTTGCAACGGGAGAAAAAAAATCATTATCTTCAAAGACCATGACAACATTTTGCTGCTTCACCGATAAC
ATTTGGGCGAACATTTTCTTCAATTCCCTTAACAATTTTAAT-ACACAAACTTTTTTTAAAACTCATGAACATTTTCTTA
TTTCCCAGACTTTTTTT-TTTCAAAATTGCGAACATTTTTTGAATATGCAAACATTTTATGGATATTTTTGAATCCACAA
AGATGCTATGATTTATAAAATTTTAGTCTTAAAGTCATATTATTTGGAATTTTCAGCTCAATCAAAATATATTTGAGTGG
ATATTTTTCTTTTCTATTCTATT-----TTA-TTTTTGAAAATTGAGAATCTGTTCAGCAATGCTCAGTGGTCT------
----------------------------------------CAAGGCCTAACCGGCCGAACCGGCCGAACAACTTTAAAGA
TAGTATTAACCACAGAGATGTGATGCCCCAAAGGCATTGATAAAGTCA--------------------------------
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-------------------------------CTTCGGTGTTTGCAGTGCGGTTTGATTGGCCACAGAAAGAACACTTGTA
GCAACCCGCCATAGGTAGCTTTGCAGAATGAGATTCTATATTAGCTTTTGTGTGG-TTCACGATGCATGTTTAGCTTGCC
ATCATTCGTTAATTAGAAAACTTGCTATTCTAAACATCGTGGCATATAGATTTCTGTATGGTGCAA--TTGTCTCTCCAA
AGACCTGGACTCATTGATATTCAGAGACCTGTGAGATGATGGCGTTCTGTTCGGGACAAATCTTGCTTTTAATCAATTAG
AATCTATGTTAGGGCTT-GATATTTTGAACTGGCACATGCAGCAATAATCCTGTCCATTTTCATTTATCCTGCAATGGAA
AAAAG-GAACATAACGGG----
>chr4A_1426
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----------------------------------------------------------------------TACTAGCAAA
AGGACCCGTGCGTTACAACGGGAGAAAAAAAATCGTTATCTTTAAAGACCATGACAACATTTTGCTGCTTCACCGATAAC
ATTTTGGCGAACATTTTCTTCAATTCGCTTAACATTTTTTAATACAGGAACTTTTTCTAAGACTCATGAACATTTTTTTA
TTTCCCAAAC--TTTTT-TTTCAAAATTGTGAATATTTTTTGAATATGCA-------------TATTTTTGAATCCACAA
AGATGTTATGATTTACAAAATTTTAGTCTTAAAGTCATATTATTTGGAATTTTCAGCTCAATCAGAATATATTTGAGTGA
ATATTTTTCTTTTCTTTTCTTTTCTATTTTA-TTTTTGAAAATTGAGAATTTGTTCAGCAATGCTCAGTGCT--------
--------------------------------------CCCAAGGCCTAACCGGCCGAACCGGCCGAACAACTTTG----
---------CCACAGAGATGTGATGCCCCAAAGGCGTCGATAAAGTCG--------------------------------
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-------------------------------CTTCGGTGCTTGTGGTGCGG-TTGATTGGCCACAGAAAGAACACTTGTA
ACAACCCGCCGTAGGTAGCTTTGCAGAATGAGATTCTATATTAGCTTTCGTGTGGTTTCAGGATGCATGTTTAGCTTGCC
ATCATTTGTT---TAAAAAAGTTGCTATTCTAAACGTCGCGGCACATAGATTTCTGTATGGTGTAA--TTGTCTCTCCAA
AGACCTGGACTCATTGATATTCAAAGACCTGTGAGATGATGGCGTTCTGTTCGGGACAAATCTTGCTTTTAATCAATTAG
AATCCGTGTTAGGGCT-AGATATTTTGAACTGGCACATGGAGCAATAATCCTGTCCATTTTCATTTATCCTGCAATGGAA
AAAAG-GAACATAACGGGTAT-
>chr1D_1426
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----------------------------------------------------------------------TACTAGCAAA
AGGATCCGTGCGTTACAACGGGAGAAAAAAATCTTA-ATCTTCAAAGACCATGACAACATTTTGCTGCTTCACTGATAAC
ATTTTGGCGAACATTTTGTTCAATTACCTTCACATTTTTTAACACACAAACTTTTTTAAAAACTCATGAACACTTTCTTA
TTTCCCAAAC--TTTCTG-----AATATGCAAATGTTTTATGAATAT--------------------TTTGAATCCACAA
AGATTTTATGATTTATAAAATTTTAGTC--AAAGTCATATTATTTGGAATTTTCAGCTCAATCAGAATATATTTGAGGGG
ATATTTTTCTTTTCTCTTCCTTT-----TTCTTTTTTGAAAATTGAGAATCTGTTCAGCAATGCTCAGTGGGCCGGCCCA
GTGAACGTAGCAGCAGCAGCAATAATAGTGCCAGCCGGTCCAAGGCCTAACCGGCCGAACCGGCCCAACAACTATAAAAA
TAGTATTCGTCACGGAGATGTGATGCCCCAAAGGCAGGACGAGGATTTAGAGCTCTCGGGTGCTCCGCACCCCTATACGT
ACAATACCAGAAAAAAAATACTGAGAAATTTAAAAAAAGAATCTGGGATTTTGGGATATCATACGTGGGTTTCCGATGTA
CTCCCGTCTGAAATTTGATGAAAAAATACCAGGAAACGTATTCGTGGCAAAAAAGACAAATTTTTCCTATGTTATAGCAA
AACACTATTTGGGTACATTTTTTCCGGGCAGTAATTCCTTCGCCACTGATACGTTTTTTGGTATTTTTTCATGAAATTTC
ACACAGAAGTAGATTAGGAAACCATGTTACATTCCGAAATTTTGGATTTTTTTTATTTTCTGGGAATTTTTAACGAATAT
TTTTCGTATAGGGTTGCGGAGCACGCGAGAACTCCCGTACTTGCAGTGCGGTTTGATTGGCCACAGGAAGAATACTTGCA
GCAATCGGCCATAGGTAGCTTTGCAGAATGAGATTCTATATTAGCTTTCGTGTGGTTTCAGGATGCATGTTTAGCTTGCC
GTCATTCGTTGATTAGAAAACTTGCTATTCTAAACATCGTGGCACATAGATTTCTGTATGGTGTAATTTTGTCTCTCCAA
AGACCTGAACTCATTGATATTCAAAGACATGCGAGATGATGGCGTTCTATTCGGGACAAATCTTGCTTTTAATCAATTAG
AATCCGTGTTAGGGCTAAGATATTTTGAACTGGCACATCGAGCAATAATCCTGCCCATCTTCATTTATCTTGCAATGGAA
AAAAAAGAACATAAAGGGGTAT
>chr6A_1427
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-----------------------------------------------------------------------ACTAGCAAA
AGGACCCGTGCGTTGCAACGGGAGAAAAAAAATCGTTATCTTTAAAGACCATGACAACATTTTGCTGCTTCACCGATAAC
ATTTTGGCGAACATTTTCTTCAATTCGCTTAACATTTTTTAATACAGGAACTTTTTCTAAGACTCATGAACATTTTTTTA
TTTCCCAAAC--TTTTTTTTTCAAAATTGTGAATATTTTTTGAATATGCA-------------TATTTTTGAATCCACAA
AGATGTTATGATTTACAAAATTTTAGTCTTAAAGTCATATTATTTGGAATTTTCAGCTCAATCAGAATATATTTGAGTGG
ATATTTTTCTTTTCTTTTCTTTTCTATTTTA-TTTTTGAAAATTGAGAATTTGTTCAGCAATGCTCAGTGCT--------
--------------------------------------CCCAAGGCCTAACCGGCCGAACCGGCCGAACAACTTTG----
---------CCACAGAGATGTGATGCCCCAAAGGCGTCGATAAAGTCG--------------------------------
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-------------------------------CTTCGGTGCTTGTGGTGCGG-TTGATTGGCCACAGAAAGAACACTTGTA
GCAACCCGCCGTAGGTAGCTTTGCAGAATGAGATTCTATATTAGCTTTCGTGTGGTTTCAGGATGCATGTTTAGCTTGCC
ATCATTTGTT---TAAAAAAGTTGCTATTCTAAACGTCGCGGCACATAGATTTCTGTATGGTGTAA--TTGTCTCTCCAA
AGACCTGGACTCATTGATATTCAAAGACCTGTGAGATGACGGCGTTCTGTTCGGGACAAATCTTGCTTTTAATCAATTAG
AATCCGTGTTAGGGCT-AGATATTTTGAACTGGCACATGGAGCAATAATCCTGTCCATTTTCATTTATCCTGCAATGGAA
AAAAG-GAACATAACGGGTAT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------------S-------------
----------------------S--------S-------SSSSSSSSSSSSSSSSSSS--S-------------------
------------------------------------------------------S-------------------------
---S---------------------SSS--------------------------------S-------------------
----------------------------------------S---------------------------------S-----
--S---------------------S---S----S----------------------------------------------
--------------------S-------------------S-----------S---------------------------
-------------------S-----------SS---------------------S------------S------------
--------S------S-------------------S---S-------------------S--S-----------------
-------------------S-----S--------------S------S---S-----------------SSSS--S----
----------------------S---------------------------------------------------------
------------------------------------------------------------S----------SS--S----
---------------------------------------------------------S----S------------SSSSS
SSS--------------------------S----SSS-S-SSS-------------------------------------
-----S-S--------------------------------------------------------S---------------
----------------------------------S------------------------------S--------------
---S----------------S-----------------------------------------------------------
----S---------------------------------------------------------S-----------------
-------------S------------------------------S-----------------------------------
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----------------------------S-----------S---------------------------------------
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-----------------------------------------------------------------S--------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------S-------------------------------------
--------------S-----------------------------------------------------------------
----------------------
>forward_284
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------------------------GATTCGTGGACGGAACACCT------------------------------------
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>reverse_2041
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----------------------------------------CAAAGTCGCTTCGGTGCTTG--------------------
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----------------------
