Multiple sequence alignment - TraesCS3B01G217100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G217100 chr3B 100.000 3635 0 0 1 3635 258722878 258719244 0.000000e+00 6713.0
1 TraesCS3B01G217100 chr3B 95.349 172 3 1 124 295 816613704 816613870 5.980000e-68 268.0
2 TraesCS3B01G217100 chr3B 83.830 235 38 0 1594 1828 722590913 722590679 1.310000e-54 224.0
3 TraesCS3B01G217100 chr3B 84.259 108 13 4 1214 1319 722591094 722590989 6.420000e-18 102.0
4 TraesCS3B01G217100 chr3A 86.188 3555 185 125 296 3631 225895960 225892493 0.000000e+00 3563.0
5 TraesCS3B01G217100 chr3A 93.785 177 6 2 118 294 222451042 222450871 1.000000e-65 261.0
6 TraesCS3B01G217100 chr3A 84.188 234 37 0 1595 1828 682479242 682479009 1.020000e-55 228.0
7 TraesCS3B01G217100 chr3A 84.259 108 13 4 1214 1319 682479422 682479317 6.420000e-18 102.0
8 TraesCS3B01G217100 chr3D 89.148 3004 99 78 777 3631 180471569 180468644 0.000000e+00 3531.0
9 TraesCS3B01G217100 chr3D 88.501 487 24 6 299 766 180472109 180471636 8.810000e-156 560.0
10 TraesCS3B01G217100 chr3D 83.264 239 32 6 1594 1828 546198933 546198699 2.840000e-51 213.0
11 TraesCS3B01G217100 chr3D 82.407 108 15 4 1214 1319 546199112 546199007 1.390000e-14 91.6
12 TraesCS3B01G217100 chr4A 94.318 176 4 3 126 301 660644406 660644575 7.740000e-67 265.0
13 TraesCS3B01G217100 chr2A 94.798 173 4 1 125 297 653281023 653280856 7.740000e-67 265.0
14 TraesCS3B01G217100 chr2A 91.667 192 9 2 123 307 388675019 388675210 3.600000e-65 259.0
15 TraesCS3B01G217100 chr7B 94.286 175 5 2 120 294 261823126 261822957 2.780000e-66 263.0
16 TraesCS3B01G217100 chr2B 93.333 180 7 1 120 299 465136122 465136296 1.000000e-65 261.0
17 TraesCS3B01G217100 chr2B 93.750 176 6 2 122 297 556659031 556659201 3.600000e-65 259.0
18 TraesCS3B01G217100 chr2B 91.192 193 9 5 104 294 52628379 52628565 4.660000e-64 255.0
19 TraesCS3B01G217100 chr4D 87.143 210 25 2 1596 1804 80836572 80836780 1.690000e-58 237.0
20 TraesCS3B01G217100 chr4D 85.308 211 29 2 1595 1804 28881790 28881999 2.200000e-52 217.0
21 TraesCS3B01G217100 chr4B 86.190 210 27 2 1596 1804 112921626 112921834 3.650000e-55 226.0
22 TraesCS3B01G217100 chr4B 84.834 211 30 2 1595 1804 41197714 41197923 1.020000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G217100 chr3B 258719244 258722878 3634 True 6713.0 6713 100.0000 1 3635 1 chr3B.!!$R1 3634
1 TraesCS3B01G217100 chr3A 225892493 225895960 3467 True 3563.0 3563 86.1880 296 3631 1 chr3A.!!$R2 3335
2 TraesCS3B01G217100 chr3D 180468644 180472109 3465 True 2045.5 3531 88.8245 299 3631 2 chr3D.!!$R1 3332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.041576 GCTTGCTTGCTTTGCTTTGC 60.042 50.0 0.0 0.0 0.0 3.68 F
66 67 0.176219 TGCTTGCTTTGCTTTGCTGT 59.824 45.0 0.0 0.0 0.0 4.40 F
1464 1618 0.165944 CCATCTTCCGTTTCGTGTGC 59.834 55.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1150 0.263468 GAGTCTTAGGGAGGAGGGCT 59.737 60.0 0.0 0.0 0.0 5.19 R
1842 2031 0.399806 ATGGAGGAGGAGGAAGAGGC 60.400 60.0 0.0 0.0 0.0 4.70 R
3369 3714 1.128724 CGAGCGAGTGACGTAGCAAG 61.129 60.0 0.0 0.0 44.6 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.781548 ACGTAAAAGTGTTAATGTCTCAGTT 57.218 32.000 0.00 0.00 0.00 3.16
26 27 8.876275 ACGTAAAAGTGTTAATGTCTCAGTTA 57.124 30.769 0.00 0.00 0.00 2.24
27 28 8.758715 ACGTAAAAGTGTTAATGTCTCAGTTAC 58.241 33.333 0.00 0.00 0.00 2.50
28 29 8.757789 CGTAAAAGTGTTAATGTCTCAGTTACA 58.242 33.333 0.00 0.00 0.00 2.41
52 53 5.662211 AAAAATTGTAGCTTGCTTGCTTG 57.338 34.783 9.11 0.00 43.74 4.01
53 54 2.358939 ATTGTAGCTTGCTTGCTTGC 57.641 45.000 9.11 4.66 43.74 4.01
54 55 1.321474 TTGTAGCTTGCTTGCTTGCT 58.679 45.000 9.11 14.40 43.74 3.91
55 56 1.321474 TGTAGCTTGCTTGCTTGCTT 58.679 45.000 14.95 4.14 43.74 3.91
56 57 1.682854 TGTAGCTTGCTTGCTTGCTTT 59.317 42.857 14.95 0.14 43.74 3.51
57 58 2.056577 GTAGCTTGCTTGCTTGCTTTG 58.943 47.619 14.95 0.00 43.74 2.77
58 59 0.878961 AGCTTGCTTGCTTGCTTTGC 60.879 50.000 6.98 5.03 40.93 3.68
59 60 0.878961 GCTTGCTTGCTTGCTTTGCT 60.879 50.000 3.47 0.00 0.00 3.91
60 61 1.578583 CTTGCTTGCTTGCTTTGCTT 58.421 45.000 3.47 0.00 0.00 3.91
61 62 1.937899 CTTGCTTGCTTGCTTTGCTTT 59.062 42.857 3.47 0.00 0.00 3.51
62 63 1.292061 TGCTTGCTTGCTTTGCTTTG 58.708 45.000 3.47 0.00 0.00 2.77
63 64 0.041576 GCTTGCTTGCTTTGCTTTGC 60.042 50.000 0.00 0.00 0.00 3.68
64 65 1.578583 CTTGCTTGCTTTGCTTTGCT 58.421 45.000 0.00 0.00 0.00 3.91
65 66 1.260561 CTTGCTTGCTTTGCTTTGCTG 59.739 47.619 0.00 0.00 0.00 4.41
66 67 0.176219 TGCTTGCTTTGCTTTGCTGT 59.824 45.000 0.00 0.00 0.00 4.40
67 68 1.292992 GCTTGCTTTGCTTTGCTGTT 58.707 45.000 0.00 0.00 0.00 3.16
68 69 1.667212 GCTTGCTTTGCTTTGCTGTTT 59.333 42.857 0.00 0.00 0.00 2.83
69 70 2.286008 GCTTGCTTTGCTTTGCTGTTTC 60.286 45.455 0.00 0.00 0.00 2.78
70 71 2.669300 TGCTTTGCTTTGCTGTTTCA 57.331 40.000 0.00 0.00 0.00 2.69
71 72 2.969990 TGCTTTGCTTTGCTGTTTCAA 58.030 38.095 0.00 0.00 0.00 2.69
72 73 3.332919 TGCTTTGCTTTGCTGTTTCAAA 58.667 36.364 0.00 0.00 35.01 2.69
73 74 3.940221 TGCTTTGCTTTGCTGTTTCAAAT 59.060 34.783 0.00 0.00 35.64 2.32
74 75 5.114780 TGCTTTGCTTTGCTGTTTCAAATA 58.885 33.333 0.00 0.00 35.64 1.40
75 76 5.759273 TGCTTTGCTTTGCTGTTTCAAATAT 59.241 32.000 0.00 0.00 35.64 1.28
76 77 6.260493 TGCTTTGCTTTGCTGTTTCAAATATT 59.740 30.769 0.00 0.00 35.64 1.28
77 78 7.134163 GCTTTGCTTTGCTGTTTCAAATATTT 58.866 30.769 0.00 0.00 35.64 1.40
78 79 7.112426 GCTTTGCTTTGCTGTTTCAAATATTTG 59.888 33.333 20.13 20.13 35.64 2.32
79 80 7.783090 TTGCTTTGCTGTTTCAAATATTTGA 57.217 28.000 23.86 23.86 44.78 2.69
80 81 7.176285 TGCTTTGCTGTTTCAAATATTTGAC 57.824 32.000 26.69 18.43 45.99 3.18
81 82 6.985645 TGCTTTGCTGTTTCAAATATTTGACT 59.014 30.769 26.69 0.00 45.99 3.41
82 83 7.169645 TGCTTTGCTGTTTCAAATATTTGACTC 59.830 33.333 26.69 21.47 45.99 3.36
83 84 7.383300 GCTTTGCTGTTTCAAATATTTGACTCT 59.617 33.333 26.69 0.00 45.99 3.24
84 85 8.578308 TTTGCTGTTTCAAATATTTGACTCTG 57.422 30.769 26.69 23.20 45.99 3.35
85 86 6.151691 TGCTGTTTCAAATATTTGACTCTGC 58.848 36.000 30.15 30.15 45.99 4.26
86 87 6.151691 GCTGTTTCAAATATTTGACTCTGCA 58.848 36.000 30.86 23.05 45.99 4.41
87 88 6.307318 GCTGTTTCAAATATTTGACTCTGCAG 59.693 38.462 30.86 27.59 45.99 4.41
88 89 6.151691 TGTTTCAAATATTTGACTCTGCAGC 58.848 36.000 26.69 15.16 45.99 5.25
89 90 5.963176 TTCAAATATTTGACTCTGCAGCA 57.037 34.783 26.69 9.37 45.99 4.41
90 91 5.300969 TCAAATATTTGACTCTGCAGCAC 57.699 39.130 23.86 3.24 41.88 4.40
91 92 5.005740 TCAAATATTTGACTCTGCAGCACT 58.994 37.500 23.86 0.00 41.88 4.40
92 93 4.959596 AATATTTGACTCTGCAGCACTG 57.040 40.909 9.47 1.54 0.00 3.66
93 94 2.556144 ATTTGACTCTGCAGCACTGA 57.444 45.000 9.47 0.00 0.00 3.41
94 95 2.330440 TTTGACTCTGCAGCACTGAA 57.670 45.000 9.47 0.00 0.00 3.02
95 96 2.330440 TTGACTCTGCAGCACTGAAA 57.670 45.000 9.47 0.00 0.00 2.69
96 97 2.330440 TGACTCTGCAGCACTGAAAA 57.670 45.000 9.47 0.00 0.00 2.29
97 98 2.216046 TGACTCTGCAGCACTGAAAAG 58.784 47.619 9.47 0.52 0.00 2.27
98 99 2.158914 TGACTCTGCAGCACTGAAAAGA 60.159 45.455 9.47 0.47 0.00 2.52
99 100 3.072944 GACTCTGCAGCACTGAAAAGAT 58.927 45.455 9.47 0.00 0.00 2.40
100 101 4.248859 GACTCTGCAGCACTGAAAAGATA 58.751 43.478 9.47 0.00 0.00 1.98
101 102 4.841422 ACTCTGCAGCACTGAAAAGATAT 58.159 39.130 9.47 0.00 0.00 1.63
102 103 5.251764 ACTCTGCAGCACTGAAAAGATATT 58.748 37.500 9.47 0.00 0.00 1.28
103 104 5.353678 ACTCTGCAGCACTGAAAAGATATTC 59.646 40.000 9.47 0.00 0.00 1.75
104 105 5.247862 TCTGCAGCACTGAAAAGATATTCA 58.752 37.500 9.47 0.00 37.70 2.57
105 106 5.706833 TCTGCAGCACTGAAAAGATATTCAA 59.293 36.000 9.47 0.00 38.75 2.69
106 107 6.207221 TCTGCAGCACTGAAAAGATATTCAAA 59.793 34.615 9.47 0.00 38.75 2.69
107 108 6.927416 TGCAGCACTGAAAAGATATTCAAAT 58.073 32.000 0.81 0.00 38.75 2.32
108 109 7.031372 TGCAGCACTGAAAAGATATTCAAATC 58.969 34.615 0.81 0.00 38.75 2.17
109 110 7.094075 TGCAGCACTGAAAAGATATTCAAATCT 60.094 33.333 0.81 0.00 38.75 2.40
110 111 7.758528 GCAGCACTGAAAAGATATTCAAATCTT 59.241 33.333 0.81 0.00 45.91 2.40
111 112 9.286946 CAGCACTGAAAAGATATTCAAATCTTC 57.713 33.333 0.00 0.00 43.75 2.87
112 113 9.017509 AGCACTGAAAAGATATTCAAATCTTCA 57.982 29.630 0.00 0.00 43.75 3.02
113 114 9.798994 GCACTGAAAAGATATTCAAATCTTCAT 57.201 29.630 0.00 0.00 43.75 2.57
133 134 9.496873 TCTTCATATACTAGCAACTACTCTCTC 57.503 37.037 0.00 0.00 0.00 3.20
134 135 8.624367 TTCATATACTAGCAACTACTCTCTCC 57.376 38.462 0.00 0.00 0.00 3.71
135 136 6.874664 TCATATACTAGCAACTACTCTCTCCG 59.125 42.308 0.00 0.00 0.00 4.63
136 137 3.353370 ACTAGCAACTACTCTCTCCGT 57.647 47.619 0.00 0.00 0.00 4.69
137 138 3.688235 ACTAGCAACTACTCTCTCCGTT 58.312 45.455 0.00 0.00 0.00 4.44
138 139 3.690628 ACTAGCAACTACTCTCTCCGTTC 59.309 47.826 0.00 0.00 0.00 3.95
139 140 1.819903 AGCAACTACTCTCTCCGTTCC 59.180 52.381 0.00 0.00 0.00 3.62
140 141 1.135053 GCAACTACTCTCTCCGTTCCC 60.135 57.143 0.00 0.00 0.00 3.97
141 142 2.168496 CAACTACTCTCTCCGTTCCCA 58.832 52.381 0.00 0.00 0.00 4.37
142 143 1.836802 ACTACTCTCTCCGTTCCCAC 58.163 55.000 0.00 0.00 0.00 4.61
143 144 1.075050 ACTACTCTCTCCGTTCCCACA 59.925 52.381 0.00 0.00 0.00 4.17
144 145 2.291670 ACTACTCTCTCCGTTCCCACAT 60.292 50.000 0.00 0.00 0.00 3.21
145 146 2.526888 ACTCTCTCCGTTCCCACATA 57.473 50.000 0.00 0.00 0.00 2.29
146 147 2.100989 ACTCTCTCCGTTCCCACATAC 58.899 52.381 0.00 0.00 0.00 2.39
147 148 2.291670 ACTCTCTCCGTTCCCACATACT 60.292 50.000 0.00 0.00 0.00 2.12
148 149 2.761208 CTCTCTCCGTTCCCACATACTT 59.239 50.000 0.00 0.00 0.00 2.24
149 150 2.496070 TCTCTCCGTTCCCACATACTTG 59.504 50.000 0.00 0.00 0.00 3.16
150 151 2.233922 CTCTCCGTTCCCACATACTTGT 59.766 50.000 0.00 0.00 36.15 3.16
151 152 2.232941 TCTCCGTTCCCACATACTTGTC 59.767 50.000 0.00 0.00 32.34 3.18
152 153 2.233922 CTCCGTTCCCACATACTTGTCT 59.766 50.000 0.00 0.00 32.34 3.41
153 154 2.635915 TCCGTTCCCACATACTTGTCTT 59.364 45.455 0.00 0.00 32.34 3.01
154 155 3.071892 TCCGTTCCCACATACTTGTCTTT 59.928 43.478 0.00 0.00 32.34 2.52
155 156 3.435671 CCGTTCCCACATACTTGTCTTTC 59.564 47.826 0.00 0.00 32.34 2.62
156 157 4.315803 CGTTCCCACATACTTGTCTTTCT 58.684 43.478 0.00 0.00 32.34 2.52
157 158 5.475719 CGTTCCCACATACTTGTCTTTCTA 58.524 41.667 0.00 0.00 32.34 2.10
158 159 5.577164 CGTTCCCACATACTTGTCTTTCTAG 59.423 44.000 0.00 0.00 32.34 2.43
159 160 6.571731 CGTTCCCACATACTTGTCTTTCTAGA 60.572 42.308 0.00 0.00 32.34 2.43
178 179 9.912634 TTTCTAGACATTTCATTTCAAATGGAC 57.087 29.630 10.30 0.00 44.77 4.02
179 180 8.868522 TCTAGACATTTCATTTCAAATGGACT 57.131 30.769 10.30 2.95 44.77 3.85
180 181 8.950210 TCTAGACATTTCATTTCAAATGGACTC 58.050 33.333 10.30 0.00 44.77 3.36
181 182 7.528996 AGACATTTCATTTCAAATGGACTCA 57.471 32.000 10.30 0.00 44.77 3.41
182 183 7.954835 AGACATTTCATTTCAAATGGACTCAA 58.045 30.769 10.30 0.00 44.77 3.02
183 184 7.869429 AGACATTTCATTTCAAATGGACTCAAC 59.131 33.333 10.30 0.00 44.77 3.18
184 185 7.499292 ACATTTCATTTCAAATGGACTCAACA 58.501 30.769 10.30 0.00 44.77 3.33
185 186 8.152246 ACATTTCATTTCAAATGGACTCAACAT 58.848 29.630 10.30 0.00 44.77 2.71
186 187 9.642327 CATTTCATTTCAAATGGACTCAACATA 57.358 29.630 10.30 0.00 39.26 2.29
187 188 9.643693 ATTTCATTTCAAATGGACTCAACATAC 57.356 29.630 10.30 0.00 0.00 2.39
188 189 6.841119 TCATTTCAAATGGACTCAACATACG 58.159 36.000 10.30 0.00 0.00 3.06
189 190 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
190 191 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
191 192 5.097742 TCAAATGGACTCAACATACGGAT 57.902 39.130 0.00 0.00 0.00 4.18
192 193 4.875536 TCAAATGGACTCAACATACGGATG 59.124 41.667 5.94 5.94 39.16 3.51
194 195 5.607939 AATGGACTCAACATACGGATGTA 57.392 39.130 15.10 0.00 45.93 2.29
195 196 5.808366 ATGGACTCAACATACGGATGTAT 57.192 39.130 15.10 0.00 45.93 2.29
232 233 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
233 234 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
234 235 4.091424 GTGTAGATTCACTCATTTTGCGC 58.909 43.478 0.00 0.00 35.68 6.09
235 236 2.927553 AGATTCACTCATTTTGCGCC 57.072 45.000 4.18 0.00 0.00 6.53
236 237 1.131126 AGATTCACTCATTTTGCGCCG 59.869 47.619 4.18 0.00 0.00 6.46
237 238 0.881118 ATTCACTCATTTTGCGCCGT 59.119 45.000 4.18 0.00 0.00 5.68
238 239 1.514003 TTCACTCATTTTGCGCCGTA 58.486 45.000 4.18 0.00 0.00 4.02
239 240 1.732941 TCACTCATTTTGCGCCGTAT 58.267 45.000 4.18 0.00 0.00 3.06
240 241 1.396648 TCACTCATTTTGCGCCGTATG 59.603 47.619 4.18 5.63 0.00 2.39
241 242 1.130373 CACTCATTTTGCGCCGTATGT 59.870 47.619 4.18 0.00 0.00 2.29
242 243 2.350192 CACTCATTTTGCGCCGTATGTA 59.650 45.455 4.18 0.00 0.00 2.29
243 244 2.607635 ACTCATTTTGCGCCGTATGTAG 59.392 45.455 4.18 7.56 0.00 2.74
244 245 2.607635 CTCATTTTGCGCCGTATGTAGT 59.392 45.455 4.18 0.00 0.00 2.73
245 246 2.605818 TCATTTTGCGCCGTATGTAGTC 59.394 45.455 4.18 0.00 0.00 2.59
246 247 2.081725 TTTTGCGCCGTATGTAGTCA 57.918 45.000 4.18 0.00 0.00 3.41
247 248 1.352114 TTTGCGCCGTATGTAGTCAC 58.648 50.000 4.18 0.00 0.00 3.67
248 249 0.528924 TTGCGCCGTATGTAGTCACT 59.471 50.000 4.18 0.00 0.00 3.41
249 250 0.528924 TGCGCCGTATGTAGTCACTT 59.471 50.000 4.18 0.00 0.00 3.16
250 251 0.921347 GCGCCGTATGTAGTCACTTG 59.079 55.000 0.00 0.00 0.00 3.16
251 252 1.734707 GCGCCGTATGTAGTCACTTGT 60.735 52.381 0.00 0.00 0.00 3.16
252 253 2.602878 CGCCGTATGTAGTCACTTGTT 58.397 47.619 0.00 0.00 0.00 2.83
253 254 2.344441 CGCCGTATGTAGTCACTTGTTG 59.656 50.000 0.00 0.00 0.00 3.33
254 255 3.581755 GCCGTATGTAGTCACTTGTTGA 58.418 45.455 0.00 0.00 0.00 3.18
255 256 3.991773 GCCGTATGTAGTCACTTGTTGAA 59.008 43.478 0.00 0.00 35.39 2.69
256 257 4.449743 GCCGTATGTAGTCACTTGTTGAAA 59.550 41.667 0.00 0.00 35.39 2.69
257 258 5.121768 GCCGTATGTAGTCACTTGTTGAAAT 59.878 40.000 0.00 0.00 35.39 2.17
258 259 6.672357 GCCGTATGTAGTCACTTGTTGAAATC 60.672 42.308 0.00 0.00 35.39 2.17
259 260 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
260 261 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
261 262 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
262 263 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
263 264 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
264 265 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
265 266 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
266 267 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
267 268 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
268 269 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
269 270 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
270 271 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
271 272 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
272 273 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
273 274 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
288 289 8.097662 AGAAAGACAAGTATTTAGGAACAGAGG 58.902 37.037 0.00 0.00 0.00 3.69
289 290 6.301169 AGACAAGTATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
290 291 6.023603 AGACAAGTATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
291 292 6.155393 AGACAAGTATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
292 293 5.785940 ACAAGTATTTAGGAACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
293 294 6.958192 ACAAGTATTTAGGAACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
294 295 7.124448 ACAAGTATTTAGGAACAGAGGGAGTAG 59.876 40.741 0.00 0.00 0.00 2.57
295 296 6.743788 AGTATTTAGGAACAGAGGGAGTAGT 58.256 40.000 0.00 0.00 0.00 2.73
296 297 7.880623 AGTATTTAGGAACAGAGGGAGTAGTA 58.119 38.462 0.00 0.00 0.00 1.82
297 298 7.779326 AGTATTTAGGAACAGAGGGAGTAGTAC 59.221 40.741 0.00 0.00 0.00 2.73
318 319 4.000988 ACGTAGTAATCAAAAGTGCAGGG 58.999 43.478 0.00 0.00 41.94 4.45
326 327 1.273327 CAAAAGTGCAGGGTTGGGATC 59.727 52.381 0.00 0.00 0.00 3.36
329 334 4.776322 TGCAGGGTTGGGATCGCG 62.776 66.667 0.00 0.00 0.00 5.87
335 340 1.029947 GGGTTGGGATCGCGATTGTT 61.030 55.000 24.55 0.00 0.00 2.83
360 365 4.499019 GCCATATCCCCAAACATAAACACG 60.499 45.833 0.00 0.00 0.00 4.49
365 370 3.266254 TCCCCAAACATAAACACGGGATA 59.734 43.478 0.00 0.00 35.57 2.59
368 373 4.037446 CCCAAACATAAACACGGGATATGG 59.963 45.833 15.95 3.91 35.57 2.74
371 376 6.127591 CCAAACATAAACACGGGATATGGAAA 60.128 38.462 15.95 0.00 32.55 3.13
372 377 7.316640 CAAACATAAACACGGGATATGGAAAA 58.683 34.615 15.95 0.00 32.55 2.29
387 392 0.386478 GAAAACCTGCTTGCGCTCAG 60.386 55.000 9.73 13.03 36.97 3.35
392 397 0.654683 CCTGCTTGCGCTCAGTATTC 59.345 55.000 9.73 0.00 36.97 1.75
459 481 6.585702 GCATGAGATGGATATAGATACGATGC 59.414 42.308 0.00 0.00 0.00 3.91
496 527 3.450115 GGGGTGCGCGTAGAGAGT 61.450 66.667 8.43 0.00 0.00 3.24
498 529 1.660560 GGGGTGCGCGTAGAGAGTAA 61.661 60.000 8.43 0.00 0.00 2.24
710 774 5.560724 CCATGAGTCTCAAAGTAAGGGAAA 58.439 41.667 6.64 0.00 0.00 3.13
751 816 1.520787 GTATCCGACCCAAGCACCG 60.521 63.158 0.00 0.00 0.00 4.94
760 825 1.073284 ACCCAAGCACCGAACAATACT 59.927 47.619 0.00 0.00 0.00 2.12
766 831 2.028476 AGCACCGAACAATACTACTGCA 60.028 45.455 0.00 0.00 0.00 4.41
767 832 2.093783 GCACCGAACAATACTACTGCAC 59.906 50.000 0.00 0.00 0.00 4.57
891 1012 4.722535 AGGCGGCCTCCTCTTCCA 62.723 66.667 17.69 0.00 0.00 3.53
909 1033 5.137255 TCTTCCACCTCCACCTCCTATATTA 59.863 44.000 0.00 0.00 0.00 0.98
910 1034 5.011982 TCCACCTCCACCTCCTATATTAG 57.988 47.826 0.00 0.00 0.00 1.73
911 1035 4.673132 TCCACCTCCACCTCCTATATTAGA 59.327 45.833 0.00 0.00 0.00 2.10
1038 1162 2.235570 GCAAATAGCCCTCCTCCCT 58.764 57.895 0.00 0.00 37.23 4.20
1039 1163 1.435256 GCAAATAGCCCTCCTCCCTA 58.565 55.000 0.00 0.00 37.23 3.53
1040 1164 1.774856 GCAAATAGCCCTCCTCCCTAA 59.225 52.381 0.00 0.00 37.23 2.69
1041 1165 2.224646 GCAAATAGCCCTCCTCCCTAAG 60.225 54.545 0.00 0.00 37.23 2.18
1042 1166 3.318313 CAAATAGCCCTCCTCCCTAAGA 58.682 50.000 0.00 0.00 0.00 2.10
1056 1180 5.019657 TCCCTAAGACTCCTTCAACCTTA 57.980 43.478 0.00 0.00 33.94 2.69
1057 1181 5.024118 TCCCTAAGACTCCTTCAACCTTAG 58.976 45.833 0.00 0.00 37.25 2.18
1058 1182 5.024118 CCCTAAGACTCCTTCAACCTTAGA 58.976 45.833 0.00 0.00 38.85 2.10
1059 1183 5.484290 CCCTAAGACTCCTTCAACCTTAGAA 59.516 44.000 0.00 0.00 38.85 2.10
1326 1459 4.950050 ACGGCAGATCAGGTAATAAGAAG 58.050 43.478 0.00 0.00 0.00 2.85
1327 1460 4.649674 ACGGCAGATCAGGTAATAAGAAGA 59.350 41.667 0.00 0.00 0.00 2.87
1328 1461 5.221342 ACGGCAGATCAGGTAATAAGAAGAG 60.221 44.000 0.00 0.00 0.00 2.85
1464 1618 0.165944 CCATCTTCCGTTTCGTGTGC 59.834 55.000 0.00 0.00 0.00 4.57
1545 1734 1.922135 AACGCAATGGTGATCGTGGC 61.922 55.000 0.00 0.00 35.19 5.01
1679 1868 2.835895 GAGGAGGAGGAGGACCGC 60.836 72.222 0.00 0.00 41.83 5.68
1911 2106 3.170672 TCCAGCACCAGCACCAGT 61.171 61.111 0.00 0.00 45.49 4.00
2092 2305 3.393970 CTCCCTCAGCTCCGGCAA 61.394 66.667 0.00 0.00 41.70 4.52
2256 2475 1.378911 GACATGGACATGGCCAGCA 60.379 57.895 27.68 1.48 40.97 4.41
2479 2719 2.509336 GTGGGCTCGACATGACCG 60.509 66.667 0.00 2.50 0.00 4.79
2480 2720 3.770040 TGGGCTCGACATGACCGG 61.770 66.667 0.00 0.00 0.00 5.28
2481 2721 4.530857 GGGCTCGACATGACCGGG 62.531 72.222 6.32 3.52 0.00 5.73
2523 2763 1.982395 TGTACAGGTGGAGGCCGAG 60.982 63.158 0.00 0.00 0.00 4.63
2539 2788 3.430098 GGCCGAGATCATCATCATCCTAC 60.430 52.174 0.00 0.00 0.00 3.18
2550 2799 4.541648 ATCCTACGGGAGGCGGCT 62.542 66.667 13.09 13.09 46.25 5.52
2695 2953 4.470462 CTCAGTTTTGCTGCTGATTACAC 58.530 43.478 0.00 0.00 44.66 2.90
2727 2989 4.154015 CAGATGGAAAACAAGTCGCATGTA 59.846 41.667 0.00 0.00 0.00 2.29
2772 3038 4.261447 GCAACCCGAACTTAGTTTCATGTT 60.261 41.667 0.00 0.00 0.00 2.71
2773 3039 5.212194 CAACCCGAACTTAGTTTCATGTTG 58.788 41.667 0.00 7.51 33.71 3.33
2778 3044 6.363473 CCGAACTTAGTTTCATGTTGTCTTC 58.637 40.000 0.00 0.00 0.00 2.87
2779 3045 6.363473 CGAACTTAGTTTCATGTTGTCTTCC 58.637 40.000 0.00 0.00 0.00 3.46
2780 3046 6.202954 CGAACTTAGTTTCATGTTGTCTTCCT 59.797 38.462 0.00 0.00 0.00 3.36
2781 3047 7.497925 AACTTAGTTTCATGTTGTCTTCCTC 57.502 36.000 0.00 0.00 0.00 3.71
2782 3048 6.831976 ACTTAGTTTCATGTTGTCTTCCTCT 58.168 36.000 0.00 0.00 0.00 3.69
2783 3049 6.931840 ACTTAGTTTCATGTTGTCTTCCTCTC 59.068 38.462 0.00 0.00 0.00 3.20
2784 3050 5.559148 AGTTTCATGTTGTCTTCCTCTCT 57.441 39.130 0.00 0.00 0.00 3.10
2785 3051 5.303971 AGTTTCATGTTGTCTTCCTCTCTG 58.696 41.667 0.00 0.00 0.00 3.35
2786 3052 3.969287 TCATGTTGTCTTCCTCTCTGG 57.031 47.619 0.00 0.00 37.10 3.86
2787 3053 3.510459 TCATGTTGTCTTCCTCTCTGGA 58.490 45.455 0.00 0.00 44.51 3.86
2829 3095 0.740868 TGCCGATCGAAGAAGCAAGG 60.741 55.000 18.66 0.00 43.58 3.61
2892 3158 4.188462 TGATATGTCCGTTGTTGTCCATC 58.812 43.478 0.00 0.00 0.00 3.51
3004 3273 6.908029 ACTAGGAGTAAGACTAGGACTAGGAA 59.092 42.308 10.81 0.00 40.71 3.36
3008 3286 4.472833 AGTAAGACTAGGACTAGGAACGGA 59.527 45.833 10.81 0.00 37.49 4.69
3035 3313 3.729906 ATCGGTGCGTACGACGAGC 62.730 63.158 25.64 15.32 46.05 5.03
3113 3416 3.111484 AGTCATTTTCCCCTCTCTCTCC 58.889 50.000 0.00 0.00 0.00 3.71
3136 3440 4.222336 CTCTCCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
3137 3441 5.389520 CTCTCCTCTCTCTCTCTCTCTCTA 58.610 50.000 0.00 0.00 0.00 2.43
3138 3442 5.970289 TCTCCTCTCTCTCTCTCTCTCTAT 58.030 45.833 0.00 0.00 0.00 1.98
3139 3443 7.103745 TCTCCTCTCTCTCTCTCTCTCTATA 57.896 44.000 0.00 0.00 0.00 1.31
3140 3444 7.178573 TCTCCTCTCTCTCTCTCTCTCTATAG 58.821 46.154 0.00 0.00 0.00 1.31
3216 3536 3.947841 GTTGGACTGTTGCGCGCA 61.948 61.111 33.09 33.09 0.00 6.09
3217 3537 2.977456 TTGGACTGTTGCGCGCAT 60.977 55.556 36.83 21.17 0.00 4.73
3219 3539 4.465512 GGACTGTTGCGCGCATGG 62.466 66.667 36.83 27.27 0.00 3.66
3242 3562 2.692741 TGGTGGTGGTGGTGGTGA 60.693 61.111 0.00 0.00 0.00 4.02
3278 3618 2.663188 GATGGACCGCGCCTCATC 60.663 66.667 0.00 9.23 0.00 2.92
3353 3698 4.592485 TCTCGTTGCTTCTTCTCTTCTT 57.408 40.909 0.00 0.00 0.00 2.52
3354 3699 5.707242 TCTCGTTGCTTCTTCTCTTCTTA 57.293 39.130 0.00 0.00 0.00 2.10
3355 3700 5.462405 TCTCGTTGCTTCTTCTCTTCTTAC 58.538 41.667 0.00 0.00 0.00 2.34
3356 3701 5.241949 TCTCGTTGCTTCTTCTCTTCTTACT 59.758 40.000 0.00 0.00 0.00 2.24
3369 3714 5.645497 TCTCTTCTTACTACTCCGTTACCAC 59.355 44.000 0.00 0.00 0.00 4.16
3375 3724 3.424703 ACTACTCCGTTACCACTTGCTA 58.575 45.455 0.00 0.00 0.00 3.49
3452 3807 0.104120 CATCACCGGCGACAATCCTA 59.896 55.000 9.30 0.00 0.00 2.94
3513 3879 5.047188 CGGTCAATGCTAAAACCAAAACTT 58.953 37.500 0.00 0.00 0.00 2.66
3514 3880 5.174943 CGGTCAATGCTAAAACCAAAACTTC 59.825 40.000 0.00 0.00 0.00 3.01
3581 3947 2.612212 TGTGAGTTTCTCGGCAGTTTTC 59.388 45.455 0.00 0.00 32.35 2.29
3617 3983 1.541588 GGTTCTGCCCATGTTTGACTC 59.458 52.381 0.00 0.00 0.00 3.36
3620 3986 1.081892 CTGCCCATGTTTGACTCGAG 58.918 55.000 11.84 11.84 0.00 4.04
3631 3997 7.254795 CCATGTTTGACTCGAGTTACTCTTTTT 60.255 37.037 21.08 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.024641 GCAAGCAAGCAAGCTACAATTTTT 60.025 37.500 3.20 0.00 45.89 1.94
31 32 3.495753 GCAAGCAAGCAAGCTACAATTTT 59.504 39.130 3.20 0.00 45.89 1.82
32 33 3.062042 GCAAGCAAGCAAGCTACAATTT 58.938 40.909 3.20 0.00 45.89 1.82
33 34 2.298163 AGCAAGCAAGCAAGCTACAATT 59.702 40.909 9.07 0.00 45.89 2.32
34 35 1.891150 AGCAAGCAAGCAAGCTACAAT 59.109 42.857 9.07 0.00 45.89 2.71
35 36 1.321474 AGCAAGCAAGCAAGCTACAA 58.679 45.000 9.07 0.00 45.89 2.41
36 37 1.321474 AAGCAAGCAAGCAAGCTACA 58.679 45.000 10.81 0.00 45.89 2.74
37 38 2.056577 CAAAGCAAGCAAGCAAGCTAC 58.943 47.619 10.81 0.03 45.89 3.58
38 39 1.603678 GCAAAGCAAGCAAGCAAGCTA 60.604 47.619 10.81 0.00 45.89 3.32
40 41 0.878961 AGCAAAGCAAGCAAGCAAGC 60.879 50.000 3.19 0.00 36.85 4.01
41 42 1.578583 AAGCAAAGCAAGCAAGCAAG 58.421 45.000 3.19 0.00 36.85 4.01
42 43 1.666700 CAAAGCAAAGCAAGCAAGCAA 59.333 42.857 3.19 0.00 36.85 3.91
43 44 1.292061 CAAAGCAAAGCAAGCAAGCA 58.708 45.000 3.19 0.00 36.85 3.91
44 45 0.041576 GCAAAGCAAAGCAAGCAAGC 60.042 50.000 0.00 0.00 0.00 4.01
45 46 1.260561 CAGCAAAGCAAAGCAAGCAAG 59.739 47.619 0.00 0.00 0.00 4.01
46 47 1.292061 CAGCAAAGCAAAGCAAGCAA 58.708 45.000 0.00 0.00 0.00 3.91
47 48 0.176219 ACAGCAAAGCAAAGCAAGCA 59.824 45.000 0.00 0.00 0.00 3.91
48 49 1.292992 AACAGCAAAGCAAAGCAAGC 58.707 45.000 0.00 0.00 0.00 4.01
49 50 2.931325 TGAAACAGCAAAGCAAAGCAAG 59.069 40.909 0.00 0.00 0.00 4.01
50 51 2.969990 TGAAACAGCAAAGCAAAGCAA 58.030 38.095 0.00 0.00 0.00 3.91
51 52 2.669300 TGAAACAGCAAAGCAAAGCA 57.331 40.000 0.00 0.00 0.00 3.91
52 53 4.541085 ATTTGAAACAGCAAAGCAAAGC 57.459 36.364 0.00 0.00 40.68 3.51
53 54 8.336806 TCAAATATTTGAAACAGCAAAGCAAAG 58.663 29.630 25.11 0.00 43.62 2.77
54 55 8.206325 TCAAATATTTGAAACAGCAAAGCAAA 57.794 26.923 25.11 0.42 43.62 3.68
55 56 7.783090 TCAAATATTTGAAACAGCAAAGCAA 57.217 28.000 25.11 1.02 43.62 3.91
68 69 5.005740 AGTGCTGCAGAGTCAAATATTTGA 58.994 37.500 23.86 23.86 44.31 2.69
69 70 5.093457 CAGTGCTGCAGAGTCAAATATTTG 58.907 41.667 20.43 20.13 39.48 2.32
70 71 5.005740 TCAGTGCTGCAGAGTCAAATATTT 58.994 37.500 20.43 0.00 0.00 1.40
71 72 4.582869 TCAGTGCTGCAGAGTCAAATATT 58.417 39.130 20.43 0.00 0.00 1.28
72 73 4.212143 TCAGTGCTGCAGAGTCAAATAT 57.788 40.909 20.43 0.00 0.00 1.28
73 74 3.683365 TCAGTGCTGCAGAGTCAAATA 57.317 42.857 20.43 0.00 0.00 1.40
74 75 2.556144 TCAGTGCTGCAGAGTCAAAT 57.444 45.000 20.43 0.00 0.00 2.32
75 76 2.330440 TTCAGTGCTGCAGAGTCAAA 57.670 45.000 20.43 2.35 0.00 2.69
76 77 2.330440 TTTCAGTGCTGCAGAGTCAA 57.670 45.000 20.43 0.00 0.00 3.18
77 78 2.158914 TCTTTTCAGTGCTGCAGAGTCA 60.159 45.455 20.43 2.58 0.00 3.41
78 79 2.487934 TCTTTTCAGTGCTGCAGAGTC 58.512 47.619 20.43 6.51 0.00 3.36
79 80 2.627515 TCTTTTCAGTGCTGCAGAGT 57.372 45.000 20.43 2.57 0.00 3.24
80 81 5.353400 TGAATATCTTTTCAGTGCTGCAGAG 59.647 40.000 20.43 2.82 32.07 3.35
81 82 5.247862 TGAATATCTTTTCAGTGCTGCAGA 58.752 37.500 20.43 0.00 32.07 4.26
82 83 5.556355 TGAATATCTTTTCAGTGCTGCAG 57.444 39.130 10.11 10.11 32.07 4.41
83 84 5.963176 TTGAATATCTTTTCAGTGCTGCA 57.037 34.783 0.00 0.00 36.97 4.41
84 85 7.256286 AGATTTGAATATCTTTTCAGTGCTGC 58.744 34.615 0.00 0.00 36.97 5.25
85 86 9.286946 GAAGATTTGAATATCTTTTCAGTGCTG 57.713 33.333 0.00 0.00 43.18 4.41
86 87 9.017509 TGAAGATTTGAATATCTTTTCAGTGCT 57.982 29.630 0.00 0.00 43.18 4.40
87 88 9.798994 ATGAAGATTTGAATATCTTTTCAGTGC 57.201 29.630 0.00 0.00 43.18 4.40
107 108 9.496873 GAGAGAGTAGTTGCTAGTATATGAAGA 57.503 37.037 0.00 0.00 0.00 2.87
108 109 8.726988 GGAGAGAGTAGTTGCTAGTATATGAAG 58.273 40.741 0.00 0.00 0.00 3.02
109 110 7.388224 CGGAGAGAGTAGTTGCTAGTATATGAA 59.612 40.741 0.00 0.00 0.00 2.57
110 111 6.874664 CGGAGAGAGTAGTTGCTAGTATATGA 59.125 42.308 0.00 0.00 0.00 2.15
111 112 6.651643 ACGGAGAGAGTAGTTGCTAGTATATG 59.348 42.308 0.00 0.00 0.00 1.78
112 113 6.771573 ACGGAGAGAGTAGTTGCTAGTATAT 58.228 40.000 0.00 0.00 0.00 0.86
113 114 6.172136 ACGGAGAGAGTAGTTGCTAGTATA 57.828 41.667 0.00 0.00 0.00 1.47
114 115 5.038651 ACGGAGAGAGTAGTTGCTAGTAT 57.961 43.478 0.00 0.00 0.00 2.12
115 116 4.484537 ACGGAGAGAGTAGTTGCTAGTA 57.515 45.455 0.00 0.00 0.00 1.82
116 117 3.353370 ACGGAGAGAGTAGTTGCTAGT 57.647 47.619 0.00 0.00 0.00 2.57
117 118 3.065648 GGAACGGAGAGAGTAGTTGCTAG 59.934 52.174 0.00 0.00 33.21 3.42
118 119 3.015327 GGAACGGAGAGAGTAGTTGCTA 58.985 50.000 0.00 0.00 33.21 3.49
119 120 1.819903 GGAACGGAGAGAGTAGTTGCT 59.180 52.381 0.00 0.00 33.21 3.91
120 121 1.135053 GGGAACGGAGAGAGTAGTTGC 60.135 57.143 0.00 0.00 34.82 4.17
121 122 2.094649 GTGGGAACGGAGAGAGTAGTTG 60.095 54.545 0.00 0.00 0.00 3.16
122 123 2.169330 GTGGGAACGGAGAGAGTAGTT 58.831 52.381 0.00 0.00 0.00 2.24
123 124 1.075050 TGTGGGAACGGAGAGAGTAGT 59.925 52.381 0.00 0.00 0.00 2.73
124 125 1.835494 TGTGGGAACGGAGAGAGTAG 58.165 55.000 0.00 0.00 0.00 2.57
125 126 2.526888 ATGTGGGAACGGAGAGAGTA 57.473 50.000 0.00 0.00 0.00 2.59
126 127 2.100989 GTATGTGGGAACGGAGAGAGT 58.899 52.381 0.00 0.00 0.00 3.24
127 128 2.379972 AGTATGTGGGAACGGAGAGAG 58.620 52.381 0.00 0.00 0.00 3.20
128 129 2.496070 CAAGTATGTGGGAACGGAGAGA 59.504 50.000 0.00 0.00 0.00 3.10
129 130 2.233922 ACAAGTATGTGGGAACGGAGAG 59.766 50.000 0.00 0.00 38.69 3.20
130 131 2.232941 GACAAGTATGTGGGAACGGAGA 59.767 50.000 0.00 0.00 40.74 3.71
131 132 2.233922 AGACAAGTATGTGGGAACGGAG 59.766 50.000 0.00 0.00 40.74 4.63
132 133 2.253610 AGACAAGTATGTGGGAACGGA 58.746 47.619 0.00 0.00 40.74 4.69
133 134 2.762535 AGACAAGTATGTGGGAACGG 57.237 50.000 0.00 0.00 40.74 4.44
134 135 4.315803 AGAAAGACAAGTATGTGGGAACG 58.684 43.478 0.00 0.00 40.74 3.95
135 136 6.698380 TCTAGAAAGACAAGTATGTGGGAAC 58.302 40.000 0.00 0.00 40.74 3.62
136 137 6.928348 TCTAGAAAGACAAGTATGTGGGAA 57.072 37.500 0.00 0.00 40.74 3.97
152 153 9.912634 GTCCATTTGAAATGAAATGTCTAGAAA 57.087 29.630 18.82 0.00 40.36 2.52
153 154 9.300681 AGTCCATTTGAAATGAAATGTCTAGAA 57.699 29.630 18.82 0.00 40.36 2.10
154 155 8.868522 AGTCCATTTGAAATGAAATGTCTAGA 57.131 30.769 18.82 2.05 40.36 2.43
155 156 8.733458 TGAGTCCATTTGAAATGAAATGTCTAG 58.267 33.333 18.82 0.00 40.36 2.43
156 157 8.634335 TGAGTCCATTTGAAATGAAATGTCTA 57.366 30.769 18.82 0.00 40.36 2.59
157 158 7.528996 TGAGTCCATTTGAAATGAAATGTCT 57.471 32.000 18.82 5.59 40.36 3.41
158 159 7.652909 TGTTGAGTCCATTTGAAATGAAATGTC 59.347 33.333 18.82 8.56 40.36 3.06
159 160 7.499292 TGTTGAGTCCATTTGAAATGAAATGT 58.501 30.769 18.82 0.00 40.36 2.71
160 161 7.949903 TGTTGAGTCCATTTGAAATGAAATG 57.050 32.000 18.82 2.80 41.24 2.32
161 162 9.643693 GTATGTTGAGTCCATTTGAAATGAAAT 57.356 29.630 18.82 0.00 0.00 2.17
162 163 7.807433 CGTATGTTGAGTCCATTTGAAATGAAA 59.193 33.333 18.82 4.37 0.00 2.69
163 164 7.304735 CGTATGTTGAGTCCATTTGAAATGAA 58.695 34.615 18.82 0.00 0.00 2.57
164 165 6.128035 CCGTATGTTGAGTCCATTTGAAATGA 60.128 38.462 18.82 3.09 0.00 2.57
165 166 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
166 167 5.943416 TCCGTATGTTGAGTCCATTTGAAAT 59.057 36.000 0.00 0.00 0.00 2.17
167 168 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
168 169 4.900684 TCCGTATGTTGAGTCCATTTGAA 58.099 39.130 0.00 0.00 0.00 2.69
169 170 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
170 171 4.635765 ACATCCGTATGTTGAGTCCATTTG 59.364 41.667 0.00 0.00 44.07 2.32
171 172 4.843728 ACATCCGTATGTTGAGTCCATTT 58.156 39.130 0.00 0.00 44.07 2.32
172 173 4.487714 ACATCCGTATGTTGAGTCCATT 57.512 40.909 0.00 0.00 44.07 3.16
173 174 5.541845 CATACATCCGTATGTTGAGTCCAT 58.458 41.667 0.00 0.00 46.70 3.41
174 175 4.944048 CATACATCCGTATGTTGAGTCCA 58.056 43.478 0.00 0.00 46.70 4.02
212 213 4.091424 GCGCAAAATGAGTGAATCTACAC 58.909 43.478 0.30 0.00 40.60 2.90
213 214 3.126858 GGCGCAAAATGAGTGAATCTACA 59.873 43.478 10.83 0.00 0.00 2.74
214 215 3.685058 GGCGCAAAATGAGTGAATCTAC 58.315 45.455 10.83 0.00 0.00 2.59
215 216 2.351418 CGGCGCAAAATGAGTGAATCTA 59.649 45.455 10.83 0.00 0.00 1.98
216 217 1.131126 CGGCGCAAAATGAGTGAATCT 59.869 47.619 10.83 0.00 0.00 2.40
217 218 1.135689 ACGGCGCAAAATGAGTGAATC 60.136 47.619 10.83 0.00 0.00 2.52
218 219 0.881118 ACGGCGCAAAATGAGTGAAT 59.119 45.000 10.83 0.00 0.00 2.57
219 220 1.514003 TACGGCGCAAAATGAGTGAA 58.486 45.000 10.83 0.00 0.00 3.18
220 221 1.396648 CATACGGCGCAAAATGAGTGA 59.603 47.619 10.83 0.00 0.00 3.41
221 222 1.130373 ACATACGGCGCAAAATGAGTG 59.870 47.619 10.83 0.00 0.00 3.51
222 223 1.448985 ACATACGGCGCAAAATGAGT 58.551 45.000 10.83 0.00 0.00 3.41
223 224 2.607635 ACTACATACGGCGCAAAATGAG 59.392 45.455 10.83 10.39 0.00 2.90
224 225 2.605818 GACTACATACGGCGCAAAATGA 59.394 45.455 10.83 0.00 0.00 2.57
225 226 2.350192 TGACTACATACGGCGCAAAATG 59.650 45.455 10.83 11.57 0.00 2.32
226 227 2.350498 GTGACTACATACGGCGCAAAAT 59.650 45.455 10.83 0.00 0.00 1.82
227 228 1.727880 GTGACTACATACGGCGCAAAA 59.272 47.619 10.83 0.00 0.00 2.44
228 229 1.067425 AGTGACTACATACGGCGCAAA 60.067 47.619 10.83 0.00 0.00 3.68
229 230 0.528924 AGTGACTACATACGGCGCAA 59.471 50.000 10.83 0.00 0.00 4.85
230 231 0.528924 AAGTGACTACATACGGCGCA 59.471 50.000 10.83 0.00 0.00 6.09
231 232 0.921347 CAAGTGACTACATACGGCGC 59.079 55.000 6.90 0.00 0.00 6.53
232 233 2.273370 ACAAGTGACTACATACGGCG 57.727 50.000 4.80 4.80 0.00 6.46
233 234 3.581755 TCAACAAGTGACTACATACGGC 58.418 45.455 0.00 0.00 0.00 5.68
234 235 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
235 236 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
236 237 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
238 239 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
239 240 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
240 241 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
241 242 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
242 243 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
243 244 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
244 245 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
245 246 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
246 247 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
247 248 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
248 249 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
262 263 8.097662 CCTCTGTTCCTAAATACTTGTCTTTCT 58.902 37.037 0.00 0.00 0.00 2.52
263 264 7.334671 CCCTCTGTTCCTAAATACTTGTCTTTC 59.665 40.741 0.00 0.00 0.00 2.62
264 265 7.017254 TCCCTCTGTTCCTAAATACTTGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
265 266 6.500751 TCCCTCTGTTCCTAAATACTTGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
266 267 6.023603 TCCCTCTGTTCCTAAATACTTGTCT 58.976 40.000 0.00 0.00 0.00 3.41
267 268 6.070710 ACTCCCTCTGTTCCTAAATACTTGTC 60.071 42.308 0.00 0.00 0.00 3.18
268 269 5.785940 ACTCCCTCTGTTCCTAAATACTTGT 59.214 40.000 0.00 0.00 0.00 3.16
269 270 6.301169 ACTCCCTCTGTTCCTAAATACTTG 57.699 41.667 0.00 0.00 0.00 3.16
270 271 7.190501 ACTACTCCCTCTGTTCCTAAATACTT 58.809 38.462 0.00 0.00 0.00 2.24
271 272 6.743788 ACTACTCCCTCTGTTCCTAAATACT 58.256 40.000 0.00 0.00 0.00 2.12
272 273 7.255070 CGTACTACTCCCTCTGTTCCTAAATAC 60.255 44.444 0.00 0.00 0.00 1.89
273 274 6.769822 CGTACTACTCCCTCTGTTCCTAAATA 59.230 42.308 0.00 0.00 0.00 1.40
274 275 5.593502 CGTACTACTCCCTCTGTTCCTAAAT 59.406 44.000 0.00 0.00 0.00 1.40
275 276 4.946157 CGTACTACTCCCTCTGTTCCTAAA 59.054 45.833 0.00 0.00 0.00 1.85
276 277 4.018960 ACGTACTACTCCCTCTGTTCCTAA 60.019 45.833 0.00 0.00 0.00 2.69
277 278 3.521126 ACGTACTACTCCCTCTGTTCCTA 59.479 47.826 0.00 0.00 0.00 2.94
278 279 2.308275 ACGTACTACTCCCTCTGTTCCT 59.692 50.000 0.00 0.00 0.00 3.36
279 280 2.720915 ACGTACTACTCCCTCTGTTCC 58.279 52.381 0.00 0.00 0.00 3.62
280 281 4.512484 ACTACGTACTACTCCCTCTGTTC 58.488 47.826 0.00 0.00 0.00 3.18
281 282 4.566426 ACTACGTACTACTCCCTCTGTT 57.434 45.455 0.00 0.00 0.00 3.16
282 283 5.683876 TTACTACGTACTACTCCCTCTGT 57.316 43.478 0.00 0.00 0.00 3.41
283 284 6.286758 TGATTACTACGTACTACTCCCTCTG 58.713 44.000 0.00 0.00 0.00 3.35
284 285 6.491714 TGATTACTACGTACTACTCCCTCT 57.508 41.667 0.00 0.00 0.00 3.69
285 286 7.559590 TTTGATTACTACGTACTACTCCCTC 57.440 40.000 0.00 0.00 0.00 4.30
286 287 7.613411 ACTTTTGATTACTACGTACTACTCCCT 59.387 37.037 0.00 0.00 0.00 4.20
287 288 7.699812 CACTTTTGATTACTACGTACTACTCCC 59.300 40.741 0.00 0.00 0.00 4.30
288 289 7.219726 GCACTTTTGATTACTACGTACTACTCC 59.780 40.741 0.00 0.00 0.00 3.85
289 290 7.752239 TGCACTTTTGATTACTACGTACTACTC 59.248 37.037 0.00 0.00 0.00 2.59
290 291 7.596494 TGCACTTTTGATTACTACGTACTACT 58.404 34.615 0.00 0.00 0.00 2.57
291 292 7.008992 CCTGCACTTTTGATTACTACGTACTAC 59.991 40.741 0.00 0.00 0.00 2.73
292 293 7.031372 CCTGCACTTTTGATTACTACGTACTA 58.969 38.462 0.00 0.00 0.00 1.82
293 294 5.867716 CCTGCACTTTTGATTACTACGTACT 59.132 40.000 0.00 0.00 0.00 2.73
294 295 5.063060 CCCTGCACTTTTGATTACTACGTAC 59.937 44.000 0.00 0.00 0.00 3.67
295 296 5.172934 CCCTGCACTTTTGATTACTACGTA 58.827 41.667 0.00 0.00 0.00 3.57
296 297 4.000988 CCCTGCACTTTTGATTACTACGT 58.999 43.478 0.00 0.00 0.00 3.57
297 298 4.000988 ACCCTGCACTTTTGATTACTACG 58.999 43.478 0.00 0.00 0.00 3.51
305 306 0.260230 TCCCAACCCTGCACTTTTGA 59.740 50.000 0.00 0.00 0.00 2.69
317 318 1.597663 CTAACAATCGCGATCCCAACC 59.402 52.381 23.92 0.00 0.00 3.77
318 319 1.003866 GCTAACAATCGCGATCCCAAC 60.004 52.381 23.92 7.13 0.00 3.77
326 327 1.732259 GGGATATGGCTAACAATCGCG 59.268 52.381 0.00 0.00 0.00 5.87
329 334 4.892934 TGTTTGGGGATATGGCTAACAATC 59.107 41.667 0.00 0.00 0.00 2.67
335 340 5.830991 GTGTTTATGTTTGGGGATATGGCTA 59.169 40.000 0.00 0.00 0.00 3.93
360 365 2.101415 GCAAGCAGGTTTTCCATATCCC 59.899 50.000 0.00 0.00 43.73 3.85
392 397 6.951530 CCCGTTATTTATGTCAAATATACGCG 59.048 38.462 3.53 3.53 32.28 6.01
459 481 2.872245 CCGTAGCATACCCACATTTCTG 59.128 50.000 0.00 0.00 38.71 3.02
710 774 0.983905 GTTTGGTTGGGTTTGGGGGT 60.984 55.000 0.00 0.00 0.00 4.95
751 816 6.067263 TGGTTTTGTGCAGTAGTATTGTTC 57.933 37.500 0.00 0.00 0.00 3.18
760 825 3.057876 CGGCTAATTGGTTTTGTGCAGTA 60.058 43.478 0.00 0.00 0.00 2.74
766 831 4.015872 TCTCTCGGCTAATTGGTTTTGT 57.984 40.909 0.00 0.00 0.00 2.83
767 832 6.867662 ATATCTCTCGGCTAATTGGTTTTG 57.132 37.500 0.00 0.00 0.00 2.44
887 1008 4.295905 AATATAGGAGGTGGAGGTGGAA 57.704 45.455 0.00 0.00 0.00 3.53
891 1012 6.335850 TCTCTTCTAATATAGGAGGTGGAGGT 59.664 42.308 0.00 0.00 31.98 3.85
1023 1147 2.524875 AGTCTTAGGGAGGAGGGCTATT 59.475 50.000 0.00 0.00 0.00 1.73
1025 1149 1.499870 GAGTCTTAGGGAGGAGGGCTA 59.500 57.143 0.00 0.00 0.00 3.93
1026 1150 0.263468 GAGTCTTAGGGAGGAGGGCT 59.737 60.000 0.00 0.00 0.00 5.19
1027 1151 0.761323 GGAGTCTTAGGGAGGAGGGC 60.761 65.000 0.00 0.00 0.00 5.19
1034 1158 3.562108 AGGTTGAAGGAGTCTTAGGGA 57.438 47.619 0.00 0.00 32.52 4.20
1035 1159 5.024118 TCTAAGGTTGAAGGAGTCTTAGGG 58.976 45.833 0.00 0.00 38.12 3.53
1036 1160 6.607004 TTCTAAGGTTGAAGGAGTCTTAGG 57.393 41.667 0.00 0.00 38.12 2.69
1038 1162 7.728981 TCTCTTTCTAAGGTTGAAGGAGTCTTA 59.271 37.037 12.82 0.00 43.55 2.10
1039 1163 6.555360 TCTCTTTCTAAGGTTGAAGGAGTCTT 59.445 38.462 12.82 0.00 43.55 3.01
1040 1164 6.078664 TCTCTTTCTAAGGTTGAAGGAGTCT 58.921 40.000 12.82 0.00 43.55 3.24
1041 1165 6.209788 TCTCTCTTTCTAAGGTTGAAGGAGTC 59.790 42.308 12.82 0.00 43.55 3.36
1042 1166 6.078664 TCTCTCTTTCTAAGGTTGAAGGAGT 58.921 40.000 12.82 0.00 43.55 3.85
1056 1180 4.927267 TGGTCTCTCTCTCTCTCTTTCT 57.073 45.455 0.00 0.00 0.00 2.52
1057 1181 5.253330 TCTTGGTCTCTCTCTCTCTCTTTC 58.747 45.833 0.00 0.00 0.00 2.62
1058 1182 5.255397 TCTTGGTCTCTCTCTCTCTCTTT 57.745 43.478 0.00 0.00 0.00 2.52
1059 1183 4.927267 TCTTGGTCTCTCTCTCTCTCTT 57.073 45.455 0.00 0.00 0.00 2.85
1351 1484 1.749063 ACAGCATTGCATCTCCACATG 59.251 47.619 11.91 0.00 0.00 3.21
1510 1664 7.147811 ACCATTGCGTTAACCCATTGTATTTAT 60.148 33.333 11.97 0.00 0.00 1.40
1515 1669 3.191581 CACCATTGCGTTAACCCATTGTA 59.808 43.478 11.97 0.00 0.00 2.41
1519 1673 2.208132 TCACCATTGCGTTAACCCAT 57.792 45.000 0.00 0.00 0.00 4.00
1520 1674 2.088423 GATCACCATTGCGTTAACCCA 58.912 47.619 0.00 0.00 0.00 4.51
1521 1675 1.063469 CGATCACCATTGCGTTAACCC 59.937 52.381 0.00 0.00 0.00 4.11
1545 1734 3.377485 CAGGAATCAGAATCAGGCACAAG 59.623 47.826 0.00 0.00 0.00 3.16
1840 2029 2.042435 AGGAGGAGGAAGAGGCGG 60.042 66.667 0.00 0.00 0.00 6.13
1841 2030 2.131067 GGAGGAGGAGGAAGAGGCG 61.131 68.421 0.00 0.00 0.00 5.52
1842 2031 0.399806 ATGGAGGAGGAGGAAGAGGC 60.400 60.000 0.00 0.00 0.00 4.70
1973 2180 0.956633 TGTACATCCCGGTCGCTATC 59.043 55.000 0.00 0.00 0.00 2.08
1979 2186 0.462047 CCTTGCTGTACATCCCGGTC 60.462 60.000 0.00 0.00 0.00 4.79
1986 2193 2.438434 GGCGGCCTTGCTGTACAT 60.438 61.111 12.87 0.00 37.24 2.29
2162 2375 3.273080 CTTGGCGCTTGGGACTTGC 62.273 63.158 7.64 0.00 0.00 4.01
2256 2475 2.496070 TCAGTCGGACTCGGATCAAAAT 59.504 45.455 7.89 0.00 36.95 1.82
2393 2612 2.668889 GTGCTGCTGCTGCTGTCT 60.669 61.111 27.67 0.00 39.81 3.41
2394 2613 4.086178 CGTGCTGCTGCTGCTGTC 62.086 66.667 27.67 17.88 39.81 3.51
2495 2735 4.673298 CCTGTACACCGCACCGCA 62.673 66.667 0.00 0.00 0.00 5.69
2550 2799 7.525029 GCTTAACTAGCTAGGAATTCCGGATTA 60.525 40.741 24.35 9.63 46.77 1.75
2580 2829 7.817418 AGTCTGCTTCTTCTAGACTATAAGG 57.183 40.000 4.46 0.00 46.74 2.69
2581 2830 8.999431 CCTAGTCTGCTTCTTCTAGACTATAAG 58.001 40.741 12.20 1.99 46.84 1.73
2585 2834 6.384595 TCTCCTAGTCTGCTTCTTCTAGACTA 59.615 42.308 11.50 11.50 46.74 2.59
2695 2953 8.383619 CGACTTGTTTTCCATCTGAATAAGTAG 58.616 37.037 0.00 0.00 34.70 2.57
2727 2989 5.105023 TGCCACCATTACATTACATTGCATT 60.105 36.000 0.00 0.00 0.00 3.56
2731 2993 5.108517 GGTTGCCACCATTACATTACATTG 58.891 41.667 1.17 0.00 43.61 2.82
2778 3044 3.491792 GGAATAGCGACTTTCCAGAGAGG 60.492 52.174 5.99 0.00 40.93 3.69
2779 3045 3.131223 TGGAATAGCGACTTTCCAGAGAG 59.869 47.826 8.71 0.00 44.92 3.20
2780 3046 3.096852 TGGAATAGCGACTTTCCAGAGA 58.903 45.455 8.71 0.00 44.92 3.10
2781 3047 3.526931 TGGAATAGCGACTTTCCAGAG 57.473 47.619 8.71 0.00 44.92 3.35
2785 3051 4.965119 ACAAATGGAATAGCGACTTTCC 57.035 40.909 0.00 0.00 41.51 3.13
2786 3052 6.088085 CACAAACAAATGGAATAGCGACTTTC 59.912 38.462 0.00 0.00 0.00 2.62
2787 3053 5.920273 CACAAACAAATGGAATAGCGACTTT 59.080 36.000 0.00 0.00 0.00 2.66
2788 3054 5.460646 CACAAACAAATGGAATAGCGACTT 58.539 37.500 0.00 0.00 0.00 3.01
2789 3055 4.615912 GCACAAACAAATGGAATAGCGACT 60.616 41.667 0.00 0.00 0.00 4.18
2793 3059 2.923020 CGGCACAAACAAATGGAATAGC 59.077 45.455 0.00 0.00 0.00 2.97
2829 3095 7.979537 CAGGGGGCAATTTTTACTAGTTATTTC 59.020 37.037 0.00 0.00 0.00 2.17
2892 3158 1.666209 GGCACCGACAATGGAATGGG 61.666 60.000 0.00 0.00 0.00 4.00
3035 3313 3.370978 AGAAAGAACGTTCACATATGCCG 59.629 43.478 28.78 3.03 0.00 5.69
3036 3314 4.946784 AGAAAGAACGTTCACATATGCC 57.053 40.909 28.78 9.53 0.00 4.40
3037 3315 6.603095 AGAAAGAAAGAACGTTCACATATGC 58.397 36.000 28.78 13.42 32.44 3.14
3038 3316 9.107367 GAAAGAAAGAAAGAACGTTCACATATG 57.893 33.333 28.78 0.00 32.44 1.78
3039 3317 9.057089 AGAAAGAAAGAAAGAACGTTCACATAT 57.943 29.630 28.78 11.09 32.44 1.78
3113 3416 3.312890 AGAGAGAGAGAGAGAGGAGAGG 58.687 54.545 0.00 0.00 0.00 3.69
3136 3440 2.116772 CCGCCCCGACCCTCTATA 59.883 66.667 0.00 0.00 0.00 1.31
3137 3441 4.936081 CCCGCCCCGACCCTCTAT 62.936 72.222 0.00 0.00 0.00 1.98
3215 3535 2.677524 CACCACCACCAGGCCATG 60.678 66.667 5.01 0.00 39.06 3.66
3216 3536 3.983420 CCACCACCACCAGGCCAT 61.983 66.667 5.01 0.00 39.06 4.40
3219 3539 4.974721 CCACCACCACCACCAGGC 62.975 72.222 0.00 0.00 39.06 4.85
3220 3540 3.498071 ACCACCACCACCACCAGG 61.498 66.667 0.00 0.00 42.21 4.45
3221 3541 2.203337 CACCACCACCACCACCAG 60.203 66.667 0.00 0.00 0.00 4.00
3222 3542 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
3224 3544 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
3225 3545 2.692741 TCACCACCACCACCACCA 60.693 61.111 0.00 0.00 0.00 4.17
3226 3546 2.203294 GTCACCACCACCACCACC 60.203 66.667 0.00 0.00 0.00 4.61
3227 3547 2.203294 GGTCACCACCACCACCAC 60.203 66.667 0.00 0.00 43.17 4.16
3269 3609 1.596477 GTGAGGATGGATGAGGCGC 60.596 63.158 0.00 0.00 0.00 6.53
3278 3618 2.815211 CGTGCGTGGTGAGGATGG 60.815 66.667 0.00 0.00 0.00 3.51
3353 3698 3.424703 AGCAAGTGGTAACGGAGTAGTA 58.575 45.455 0.00 0.00 45.00 1.82
3354 3699 2.245582 AGCAAGTGGTAACGGAGTAGT 58.754 47.619 0.00 0.00 45.00 2.73
3355 3700 3.730061 CGTAGCAAGTGGTAACGGAGTAG 60.730 52.174 0.00 0.00 45.00 2.57
3356 3701 2.162208 CGTAGCAAGTGGTAACGGAGTA 59.838 50.000 0.00 0.00 45.00 2.59
3369 3714 1.128724 CGAGCGAGTGACGTAGCAAG 61.129 60.000 0.00 0.00 44.60 4.01
3375 3724 1.729838 GAAAGCGAGCGAGTGACGT 60.730 57.895 0.00 0.00 44.60 4.34
3452 3807 5.533903 CAGTTGCAGAGGCCATAATTAAGAT 59.466 40.000 5.01 0.00 40.13 2.40
3513 3879 6.173339 GGTTTCTTGGTCAGTTGAGATATGA 58.827 40.000 0.00 0.00 0.00 2.15
3514 3880 5.063944 CGGTTTCTTGGTCAGTTGAGATATG 59.936 44.000 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.