>input_sequence_46538
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---CCCGCTCCTCGCCTTTTAAGGCAAATAGCCCTCCTCCCTAAGACTCCTTCAACCTTAGAAAGAGAGAGAGAGAGACC
AAGAATGGCTCGTGAGATGAATGGCTTCTTCAGCCACCCTCCGCCTCCGCCTCCGG------CGCCGTAC---CAGGAGG
AGGCGGCGGCGGACGTGGACGACGCGGAGGACGGCGGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGCCACTGGAGGCCC
GCCGAGGACGCCCGGCTCAAGGAACTCGTCGGCCAGTACGGCCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGG
CAGATCAGGTAATAAGAAGAGAAATAAAACAACAACCTAATACCATGTGGA--------GATGCAATGCTGTTTCATTTC
GGATTCGAAGATGCAT----TGAATGCGCAAACGGAACTACTCTACTCTACTGGTTTCTTTTACTGCAACCATCTTCCGT
TT---------CGTGTGCATAACTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGTAAAAATAAATACAATG-----
-----------------------GGTTAACGC-------AATGGTGATCGTGGCTTGTGCCTGATTCTGATTCCTGGTTT
ATTTTGTGATGATGTCGGCCAACAGGGAAAAGCTGCCGTCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCG
GGCCTTCACGGAGGAGGAGGAGGACCGCCTCATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCC
TCTTCCCCGGCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGC
GCCTTCCGCCGCCGCACCAAGCCCGCCTCCGCCTCTTCCTCCTCCTCCATCGCCCCGGCGCCGCACTACG------CGGG
CGTCGTCCTCCAGCACCAGCACCAGTACCAGCACC------------ACGGGGCATCTCCCATTCCCATGCCGCTCCAGC
CGTTCGCCATGGGGGTGGCGATAGCGACCGGGATGTACAGCAAGGCC------GCCACGGCCACGGCCAGCCGCGCCTAC
AGCGGCGGCGAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAACGCCGCCGTGCCCTG
CTTCTACCACCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCGCAAGTCCCAAGCGCCAAGCCCCAAG
CTGTTGTTGTTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACATGGACATGGA------CATGGACATGGCCAGCATTTTG
ATCCGAGTCCGACTGACATGGTGGTCTTTGGTGCAGGCTACGACATGGCTCCGCAAGCTCACGCCGTGACCCAGGCCTTC
TCGCCGAGCGCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCCTCGGCGCGGAGA------------CAGCAGC-------
--AGCAGCACGAGGAGGAGGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACCGG
GCGGGGCGGGGCGGTGCGGTGCGGTGTACAGGTGGAGGCCGAGATCATCATCATC---------CTACGGGAGGCGGCTA
ATCCGGAATTCCTAGCTAGTTAAGCAAGCCTTATAGTCTAGAAGAAGCAGACTAGGAGAAGATGAGGAG---------TT
AAGTTGTTTTAT--------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G217100
TACGTAAAAGTGTTAATGTCTCAGTTACAAAAAAATTGTAGCTTGCTTGCTTGCTTTGCTTTGCTGTTTCAAATATTTGA
CTCTGCAGCACTGAAAAGATATTCAAATCTTCATATACTAGCAACTACTCTCTCCGTTCCCACATACTTGTCTTTCTAGA
CATTTCATTTCAAATGGACTCAACATACGGATGTATGTAGACATATTTTAAAGTGTAGATTCACTCATTTTGCGCCGTAT
GTAGTCACTTGTTGAAATCTCTAGAAAGACAAGTATTTAGGAACAGAGGGAGTAGTACGTAGTAATCAAAAGTGCAGGGT
TGGGATC----GCGATTGTTAGCCATATCCCCAAACATAAACACGGGATATGGAAAACCTGCTTGCGCTCAGTATTCGCG
TATATTTGACATAAATAACGGGAGCAGAAGTAGTAAATGCATGAGATGGATATAGATAC-----------------GATG
CAGAAATG---------TGGGTATGCTACGGGGTGCGCGTAGAGAGTAAGGGCGTTCCGGTGGGTTTGTCAAGGTGGCAA
GGGACAGAGTTCCACC----CCCCGGCCCCTGGTAGTGGTTGGGATTGGACTCCCCAAACCCACACGAGTGGCCTCTGGA
ACCCAAAAAAAGAATCATAAAACCA-----------------------------TCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGCCCTTCTTTTCCAACCCTTTTGCCATGAGTCTCAAAGTAAGGGAAACCCCC-AAACCCAACCAAACCGAGTA
TCCGACCCAAGCACCGAACAATACTACTGCAC--------------------------------------------AAAA
CCAATTAG------------CCGAGAGATATAAAGTTAAAGTTAGGAGGCATTAATTGGTTTCTTGTTTGGCATTTTGTT
GCGGGTGGCGAAGCAAGAACAAGAGAAAGAGAGGAGGCGGCCTCCTCTTCCAC--CTCCA-CCTCCTATATTAGAAGAGA
GGGACTCCCCTCGCAGCGGCATCAACAGCAAACAAGAAGCTGTCCCTTTCGCTCTCCTCTCTTCTTCCGTTACCACTCAC
CCTCCCGCTCCTCGCCTTTTAAGGCAAATAGCCCTCCTCCCTAAGACTCCTTCAACCTTAGAAAGAGAGAGAGAGAGACC
AAGAATGGCTCGTGAGATGAATGGCTTCTTCAGCCACCCTCCGCCTCCGCCTCCGG------CGCCGTAC---CAGGAGG
AGGCGGCGGCGGACGTGGACGACGCGGAGGACGGCGGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGCCACTGGAGGCCC
GCCGAGGACGCCCGGCTCAAGGAACTCGTCGGCCAGTACGGCCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGG
CAGATCAGGTAATAAGAAGAGAAATAAAACAACAACCTAATACCATGTGGA--------GATGCAATGCTGTTTCATTTC
GGATTCGAAGATGCAT----TGAATGCGCAAACGGAACTACTCTACTCTACTGGTTTCTTTTACTGCAACCATCTTCCGT
TT---------CGTGTGCATAACTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGTAAAAATAAATACAATG-----
-----------------------GGTTAACGC-------AATGGTGATCGTGGCTTGTGCCTGATTCTGATTCCTGGTTT
ATTTTGTGATGATGTCGGCCAACAGGGAAAAGCTGCCGTCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCG
GGCCTTCACGGAGGAGGAGGAGGACCGCCTCATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCC
TCTTCCCCGGCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGC
GCCTTCCGCCGCCGCACCAAGCCCGCCTCCGCCTCTTCCTCCTCCTCCATCGCCCCGGCGCCGCACTACG------CGGG
CGTCGTCCTCCAGCACCAGCACCAGTACCAGCACC------------ACGGGGCATCTCCCATTCCCATGCCGCTCCAGC
CGTTCGCCATGGGGGTGGCGATAGCGACCGGGATGTACAGCAAGGCC------GCCACGGCCACGGCCAGCCGCGCCTAC
AGCGGCGGCGAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAACGCCGCCGTGCCCTG
CTTCTACCACCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCGCAAGTCCCAAGCGCCAAGCCCCAAG
CTGTTGTTGTTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACATGGACATGGA------CATGGACATGGCCAGCATTTTG
ATCCGAGTCCGACTGACATGGTGGTCTTTGGTGCAGGCTACGACATGGCTCCGCAAGCTCACGCCGTGACCCAGGCCTTC
TCGCCGAGCGCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCCTCGGCGCGGAGA------------CAGCAGC-------
--AGCAGCACGAGGAGGAGGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACCGG
GCGGGGCGGGGCGGTGCGGTGCGGTGTACAGGTGGAGGCCGAGATCATCATCATC---------CTACGGGAGGCGGCTA
ATCCGGAATTCCTAGCTAGTTAAGCAAGCCTTATAGTCTAGAAGAAGCAGACTAGGAGAAGATGAGGAG---------TT
AAGTTGTTTTATTTATGGCGATGAATGTGACCTCTCTGGTTTCACCCCTCCTCAGTTTTGCTGCTGATTACACTACTTAT
TCAGATGG----AAAACAAGTCGCATGTAATGCAATGTAATGTAATGGTGGCAACCCGAACTTAG----TTTCATGTTGT
CTTCCTCTCTGGAAAGTCGCTATTCCATTTGTTTGTGCCGATCGAAGAAGCAAGGAAATAACTAGTAAAAATTGCCCCCT
GCAGCAACGAGCATTTGATATGTCCGTTGTTGTCCATCCCATTCCATTGTCGGTGCCCACCCAGCCGCCGGCGACGGCGA
GAGAAAAACAAATTAATGGCTCACTCAGTTTACTAAGCCGGTGCACTAGGAGTAAGA---CTAGGACTAGGAA-------
--CGGACCGGCGTGATCGGTGCGTACGACGAGCGGCATATGTGAACG-------------------------TTCTTTCT
TTCTTTCTTGTTGCATTCATCAACAAGAACGACGAGTCATTTTCCCCTCTCTCTCCCTCTC-CTCTCTCTCTCTCTCTCT
ATAGAGGGTCGGGGCGGGTCGGGGCGGGTCGGGGCCGGGCGGGCG----TGG------------TCTCGGGGGATTCCGT
TGGACTGTTGCGCGCATGGCCTGGTGGTGGTGGTGGTGGTGACCGTGGCGGGGACGGATGGATGG---------------
-----ACCGCGCCTCATCCATCCTCAC-----CACGCACGCCTTTGCAAGCCAACGAAACTGCTGTTGCAACAGCATCTC
GTTGCTTCTTCTCTTCTTACTACTCCGTTACCACTTGCT----ACGTCACTCGCTCGC-----TTTCTGTAATTGCTGCT
ACCTGCA-ACTGCCTGCCTGCTCGCCTCATCACCGGCGACAATCCTATCTTAATTATGGCCTCTGCAACTGCAA------
-----CCAACCCACACGGTCAATGCTAAAACCAAAACTTCATATCTCAACTGACCAAGAAACCGTGCAGTGAGCAATCAC
TGCAATGTGAGTTTCTCGGCAGTTTTCACCACCCACAGTGCCGGTTCTGCCCATGTTTGACTCGAGTTACTCTTTTTTGT
>chr3A_296
TACTA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GTAACCAAAATTGCAGCCT
TGGGATA----GCAACTGCCAGCCATATCCCCAAACATAAACACAGGATGTGTAAG-CCTGCTTGCGCTCAAAATTGGCG
TATATTTGACATAAATAACGGGGGCAGAAGTAGTAAATGCATGAGATGGATATAGATACACATCCCATAGTAATGTGGTG
AAGAAAGAAATGTGGGTTGGGTATGCTACGGGGTGCGCGTAGGGAGAAGGGGCGTTCCGGTGGGTTTGTCAAGGTGGCAA
GGGACAGAGTTCCACCCCGGCCCCTGCCCCTGGTAGTGGTTGGGATTGGACTCCCCAAACCCACACGAGTGGCCTCTGGA
ACCCAAAAAAGAATCATTCATAAAATCACCGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGCCCTTCTTTTCCAACCCTTTTGCCATGAGTCTCAAAGTAAGCGAAGCCCCCCAAAGCCAACCAAACCGAGGT
TAC-------------------------------------------ACAACCGAAAAAGAAAAGAAAAGAAAA------A
CCAATTAGTATT-AGCTTAGCCGAGAGATATAAAGTTAAAGTTAGGAGGCATTAATTGGTTTCTTGCTTGGCATTTAGTT
GCGGGTGGCGAAGCAAGAACAAGAGAA-GAGAGGAGGCGGCCTCCTCCTCCCC--CTCCCGCCTCCTATATT---AGAGA
GGGACTCCCCTCGCAGCGGCATCAACAGCAAACAAGAAGCTGTCCCTTTCGCTCTCCTCTCTTCTTCCGTTACCACTCAC
CCTCCCGCTCCTCGCCTTTTAAGGCATCCTCCCCTCCAATCCTC--CTCCTTGAACCTTGAC-AGAGAGAGAGAGAGACC
AAGAATGGCTCGTGAGATGAACGGCTTCTTCAGCCACCCTCCGACTCCGCCTCCGG------CGCCGTACCCGCAGGAGG
AGGCGGCCGCGGACGTGGACGACGCGGAGGACGGCGGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGGCACTGGAGGCCC
GCCGAGGACGCCCGGCTCAAGGAACTCGTCGGCCAGTACGGGCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGG
CAGATCAGGTATAA----------------AACAACCTAATACTATGTGGAGTTCCTCCGATGCAATGCTGTTTCATTTC
GGATTCGAAGATGCATGCATTGAATGCGCAAACGGAACTAGTCTACTGCTTTGGTTTCTTTTACTGCGACCATCTTCCGT
TTATTTGTTTTCGTGTGGATAACTTCTTGGACTTGTTTCTTTCTTTCTTTCTTGTAGTAAAAT------ACATGCATTTT
ACTAGTAATTTGGAGTGTGTTGCGGTTAACGCAGTGGTGAATGGTGATCGTGGGTTCTGCGCC---CTGATTCCTGGTTT
ATTTTGTGATGATGTCGGCCAACAGGGAAAAGCTGCCGCCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCG
GGCCTTCACGGAGGAGGAGGAGGACCGGCTGATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCC
TCTTCCCCGGCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGC
GCCTTCCGCCGCCGCAGCAAGCCCGCCT---CCTCTTCCTCCTCCTCCATCGCCCCGGCGCCGCACCACCCGGCCCCGGC
CGTCGTCCTCCAGCACCAGCACCAGCACCAGCACCTGTACCAGCACCACGGGGCATCTCCCATTCCCATGCCGCTCCAGC
CGTTCGCCATGGGGGTGGCCATAGCTACCGGGGTGTACAGCAAGGCCGCTACGGCCACGGCCACGGCCAGCCGCGCCTAC
AGCGGCGGCGAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAGCGCCGCCGTGCCCTG
CTTCTACCACCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCTCAAGTCCCAAGCGCCAAGCCCCAAG
CTCTTGTTGTTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACAT------------------GGACATGGCCAGCGTTTTG
ATCCGACTCCGACTGACATGGTGGTCTTTGGTGCAGGCTACGACATGGCTCCGCTAGCTCACGCCGTGACCCAGGCGTTC
TCACCCAGCGCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCGTCGGCGCGGCAACAGCAGCGCAGGCAGCAGC-------
--AGCAGCACGAGGAGGAGGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACC--
---GGGCGGGGCGGGGCGGTGCGGTGTACAGGTGGAGGCCGATATCATCATCATCATCATCATCCTAAGGGAGGCGGCCA
ATCC----TTCCTAGCTAGTTAAGCAAGG-TTAGAGTCTAGAAGAAGCAGACTAGGAGAAGATGAGGAGGATGAGGAGTT
AAGTTGTTTTATTTATGGCGATGAATGTGACCTCTCTGGTTTCACT-CTCCTCAGTTTTGCCGCTGATTACAGTACTTAT
TCAGATGGGATTAAAACAAGTCGC----------ATGTAATGTAATGGTGGCAACCCGAACTTAG----TTTCATGTCCT
CTT------------GTCTCTATTCCATTTGTTTGTGCCGATCGAAGAAGCAAGAAAATAACTAGTAAAAATTGCCCCCT
GCAGCGACGAGCATTAGATATGTCCGTTGTTGTCCATTCCATTCCATTGTCGGTGCCCACCCAGCCGCCGGCGACGGCGA
GAGAGAAACAAATTAAAGGTTCACTCAGTTTACTAAGCCGGTGCACTAGGAGTAAGA---CTATGACTAGGAGCGGACCG
GCCGGGCCGGCGTGATCGGTGCGTACGACGAG-----TATGTGAACGCAGCGGCGAGC--------CTTTCTTTCTTTCT
TTCTTTCTTGTTGCATTCATCAACAAGAACGACGAGTCATTTTCCTCTCTCGCTCTCTCTCTCACGGGGC----------
-----GGGACGGGGCGGGGCGGGGCGGGTCGGGGCCAGGCGGGCGGGCGGGCATGGTCTCGGCCTCTCGGGGGATTCCCT
TGGACTGTTGCGCGTGAGCA-------------------------TGGCGGGGACGGATGGATGGTGCCTCGGCGGAGGA
GGAGGACCTCGCCTCATGCATCCTCAC-----CACGCACGCCTTTGCAAGCCAACGAAACTGCTGTTGCAACAGCATCTC
GTTGCTTCTTCTCTTCTG---ACTCCGTTACCAGTTGCT----TCGTCACTCGCTCGCTCGCTTTTCTGTAATTGCTGCT
ACCTGCACACTGCCTGCCTGCTCGCCTCATCACCGGCGACAATCCTGTCTTAATTATGGCCTCTGCAACTGCAACTGCAA
CCAACCCAACCCACACGGTCAATGCTAAAACCAAA-CTG-ATACCTGAACTGACGAAGAAACCGTGCAGTGAGCAATCAC
TGCAATGTGAGTTTCTCGGCAGTTTTTACCACCCACAGTGCCGGTTCTGCCCATGTTTGACTGGACTTACTCTTTT----
>chr3D_299
--------------------------------------------------------------------------------
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----------------------------------------------------------GTAGTAAGCAAAAGTGCAGCCT
TGGGATATATAGCAATTGTCAGCCATATCCGCAAACATAAACACAGGATGTGTAAC-CCTGCTTGCGCTCAATATTGGCG
TATATTTGACATAAATAAGGGGAGCAGAAGTAGTAAATGCATGAGATGGATATAGATACGACG--CATAGTAATGTGATG
AAGAAATG---------TGGGTATGCTACGGGGTGCGCATAGGGGGAAGGGGCGTTCCGGTGGGTTTGTCAAGGTGGCAA
GGGACAAAGTTCCACCCC------GGCCCCTGGTAGTGGTTGGGATTGGACTCCCCAAACCCACACGAGTGGCCTCTGGA
ACCCAAAAAAAGAATCATAAAACCA---------------------------------------TCTCTCTCTCCCTCTC
TCTCTCTGCCCTTCTTTTCCAACCCTTTTGCCATGAGTCTCAAAGTAAGGGAAGCCCCC-AAACCCAACCAAACCGAGTA
TCCGACCCAAGCACCCAACAATACAACTGCTGTACAAAACAAGGTTACCACCGTAAAAGAAAAGAAAAGAAAAGGAAAAA
CCAATTAGTGGTAAGCTTAGCCGAGAGATATAAAGTTAAAGTTAGGAGGCATTAATTGGTTTCTTGTTTGGCATTTTGTT
GCGGGTGGTGAAGCAAGAACAAGAGAA-GAGAGGAGGCGGCCTCCTCCTCCCCGCCTCCA-CCTCCTATATT---AGAGA
GGGACTCCCCTCGCAGCGGCATCAACAGCAAACAAGAAGCTGTCCCTTTCGCTCTCCTCTCTTCTTCCGTTACCACTCAC
CCTCCCGCTCCTCGCCCTTTAAGGCATACCCCTCTCCAATCCTC--CTTGAACCTT---------AGAGAGAGAGAGACC
AAGAATGGCTCGTGAGATGAATGGCTACTTCAGCCACCCTCCGCCTCCGCCTCCGGTTCCGGCGCCGTAC---CAGGAGG
AGGCGGCCGCGGACGTGGACGACGCGGAGGACGGCAGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGCCACTGGAGGCCC
GCCGAGGACGCCAGGCTCAAGGAACTCGTCGGCCAGTACGGCCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGG
CAGATCAGGTAATAAGAA---AAATAAAACAACCTCTAA----TATGTGGAGTTCCTCCGATGCAATGCTGTTTCATTTC
GGATTCGAAGATGCAT----TGAATGCGCAAACGGAACTACTCCTA-CTACTGGTTTCTTTTACTGCAACCATCTTCCGT
TT---------CGTGTGGATAACTTCTTTTCTTTCTTTCTTTCTT------------GTAAAAGTAAAAACATGCATTTT
AGTATTAATTTGGAGTGTGTTGCGGTTAACGC-------AATGGTGATCGTGGGTTGTGCCTGATTCG--TTCGTGGTTT
ATTTTGTGGTGATGTCGGCCAACAGGGAAAAGCTGCCGTCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCG
GGCGTTCACGGAGGAGGAGGAGGACCGGCTGATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCC
TCTTCCCCGGCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGC
GCCTTCCGCCGCCGCACCAAGCCCGCCT---CCTCCTCCTCCTCCTCCATCGCCCCGGCGCCGCACTACCCA------GG
CGTCTTCCTCCAGCACCAGCACCAGCACCAGCACCACTACCAGCACCACGGGGCTTCTCCCATTCCCATGCCGCTCCAGC
CGTTCGCCATGGGGGTGGCCATAGCAACCGGGGTGTACAGCAAGGCC------GCCACGGCCACGGCCAGCCGCGCCTAC
AGCGGCGGCGAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAGCGCCGCCGTCCCCTG
CTTCTACCACCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCTCAAGTCCCAAGCC-----CCCCAAG
CTGTTGTTGTTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACATGGACATGGAGATGGACATGGACATGGCCAGCGTTTTG
ATCCGAGTCCGACTGACATGATGGTCTTTGGTGCAGGCTACGACATGGCTCCGCAAGCTCACGCCGTGACCCAGGCGTTC
TCGCCGAGCGCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCGTCGGCGCGGCAA------------CAGCAGCGCAGGCA
GCAGCAGCACGAGGAGCAGGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACC--
---GGGCGGG-----GCGGTGCGGTGTACAGGTGGAGGCCGATATCATCATCATCGTCGTCGTCCTAAGGGAGGCGGCCA
ATCC----TTCCTAGCTAGTTAAGCAAGG-TTAGAGTCTAGAAGAACCAGACTAGGAGAAGATGAGGAGGATGAGGAGTT
AAGTAGTTTTATTTATGGCGATGAATGTGACCTCTCTGGTTTCACTCCTCCTCAGTTTTGCTGCTGATTACAGTACTTAT
TCAGATGG----AAAAGAAGTCGCATGTCATGTAATGTAATGTAATGGTGGCAACCCGAACTTAGTTTCTTTCATGTCCT
CTT------------GTCTCTATTCCATTTGTTTGTGCCGA----AGAAGCAAGAAAATAACCAAAAATTGC--CCCCCT
GCAGCAACGAGCATTTGATATGTCCGTTGTTGTCCGTTCCATTCCATTGTCGGTGCCCACCCAGCCGCTGGCGACGGCGA
GAGAAAAACAAATTAATGGCTCACTCAGTTTACTAAGCCGGTGCACTAGGAGTAAGAAGACTAGGACTAGGAGCGGACCG
GCCTGGCCGGCGTGATCGGTGCGTACGACGAG-----TATGTGAACGCAGCGGCGAGCCTTCCTTTCTTTCTTTCTTTCT
TTCTTTCTTGTTGCATTCATCAACAAGAACGACGAGTCATTTTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCA
----AGGGTCGGGTCGGGGCGGGGCGGGTCGGGGCCGGGCGGACGGGCGTGG------------TCTCGGGGGATTCCGT
TGGACTGTTGCGCGTGAGCATGGCC--TGGTGGTGGTGGTGGCCGTGGCGGGGACGGATGGATGGTGCCTGGGCGGAGGA
GGAGGACCTCGCCTCATGCATCCTCACGCACGCACGCACGCCTTTGCAAGCCAACGAAACTGCTGTTGCAACAGCATCTC
GTTGCTTCTTCTCTTCTG---ACTCCGTTACCAGTTGCTCATCTCGTCACTCGCTCGCTCGCTTT-CTGTAATTGCTGCT
ACCTGCA-A----CTGCCTGCTCGCCTCATCACCGGCGACAATCATGTCTTAATTATGGCCTCTGCAACTGCAAC-----
------CAACCTACACGGTCAATGCTAAAACCAAAACTG-ATATCTCAACTGACCAAGAAACCGTGCAGCGAGCAATCAC
TGCAATGTGAGTTTCTCACCAGTTTTTACCACCCACAGTGCCGGTTCTGCCCATGTTTGACTGGACTTGCTCTTTT----
>SNPs
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------SS-
------S------S-----S------------------------S----S--S--SS--------------S----S---
--------------------------------------------------------------------------------
S-----------------------------------------S---S-S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------S--------S-----SS------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-------------------S---S--------------------SSS-----
--------------------------------------------------------------------------------
--------------------------S-SSS------SSS-SSSSS-------------SSSS-----------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------SSS----------------------S------------------------------------
--------------------------------------------------------------------------------
-----------------S-----------------------------------SSSS------S----S---SSS-----
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
---------------------------S--S-------------------------------------------------
--------------------------------------------------------------------------------
----------------------------SSS--------------------------------------S----------
-------------------------S------------------------------------------------------
-------------------S-----S------S-----------------------------------------------
----------------------------------------------------------------S---------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------S-----
----------------------------------------------------------------------------S---
-----------------------------------------S---------SS---------------------------
------------------------------------------------------------------------------SS
SSS-----------S---------------------------S------------------------S----------S-
----SSSS--------------------SS---S----------------------------------------------
---------------------------------------------S--------------------------S-------
----------------------------S---S--------------------------------------------SS-
---SSSSSSSSSSSS---S-----------------------------------S-------------------------
-------------------------------------S------------------------------------------
------------------------------------------------------------------------S-------
-----S--------------------------SSSSS-------------------------------------------
-------------------------------------------------------S-----------------------S
SSSS--------------S-------------------------------------------------------------
--------------SSS-SSSS-SSSS--------------S--------------------------------------
--------S--------S--------------------------------------------------------------
-----------------SSSS------------S---------S------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------SS----------------------------------------
--------------------------S-----------------------------------S--S----------SSSS
>forward_64
--------------------------------------------GCTTGCTTGCTTTGCTTTGC----------------
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>reverse_1150
--------------------------------------------------------------------------------
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-----------------------------AGCCCTCCTCCCTAAGACTC-------------------------------
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>forward_67
-----------------------------------------------TGCTTGCTTTGCTTTGCTGT-------------
--------------------------------------------------------------------------------
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>reverse_2031
--------------------------------------------------------------------------------
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------------------------------GCCTCTTCCTCCTCCTCCAT------------------------------
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>forward_1618
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------------------------------------------------------------------------------CC
ATCTTCCGTTTCGTGTGC--------------------------------------------------------------
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>reverse_3714
--------------------------------------------------------------------------------
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---------------------------------CTTGCTACGTCACTCGCTCG---------------------------
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