Multiple sequence alignment - TraesCS3B01G204700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G204700 chr3B 100.000 4022 0 0 1 4022 239301006 239305027 0.000000e+00 7428.0
1 TraesCS3B01G204700 chr3B 89.865 296 26 4 3727 4022 756284464 756284755 1.060000e-100 377.0
2 TraesCS3B01G204700 chr3D 93.569 2488 114 13 695 3166 162401751 162404208 0.000000e+00 3666.0
3 TraesCS3B01G204700 chr3D 91.765 425 28 5 3289 3708 162405600 162406022 5.790000e-163 584.0
4 TraesCS3B01G204700 chr3D 87.037 54 5 2 2111 2164 162402200 162402251 4.340000e-05 60.2
5 TraesCS3B01G204700 chr3A 92.214 1477 79 7 776 2243 194693827 194695276 0.000000e+00 2058.0
6 TraesCS3B01G204700 chr3A 94.026 837 45 2 2237 3073 194700710 194701541 0.000000e+00 1264.0
7 TraesCS3B01G204700 chr6D 87.534 746 79 13 1 738 162260073 162260812 0.000000e+00 850.0
8 TraesCS3B01G204700 chr6A 87.141 731 82 11 1 725 287629878 287630602 0.000000e+00 819.0
9 TraesCS3B01G204700 chr1D 87.092 736 79 14 1 728 15419902 15419175 0.000000e+00 819.0
10 TraesCS3B01G204700 chr4D 86.939 735 83 11 1 728 109369659 109370387 0.000000e+00 813.0
11 TraesCS3B01G204700 chr7D 86.957 736 78 17 1 728 525484285 525483560 0.000000e+00 811.0
12 TraesCS3B01G204700 chr7D 79.592 98 16 4 2611 2706 41440071 41439976 2.590000e-07 67.6
13 TraesCS3B01G204700 chr7B 86.595 746 87 12 1 738 510189084 510188344 0.000000e+00 811.0
14 TraesCS3B01G204700 chr7B 91.135 282 24 1 3739 4020 377817485 377817205 8.160000e-102 381.0
15 TraesCS3B01G204700 chr7A 86.803 735 81 13 1 728 208802291 208803016 0.000000e+00 806.0
16 TraesCS3B01G204700 chr7A 86.731 731 79 15 5 728 599546295 599547014 0.000000e+00 797.0
17 TraesCS3B01G204700 chr2D 86.739 739 79 17 1 728 9242847 9243577 0.000000e+00 804.0
18 TraesCS3B01G204700 chr2D 94.872 39 0 2 2676 2714 594649471 594649435 4.340000e-05 60.2
19 TraesCS3B01G204700 chr2D 96.875 32 1 0 2676 2707 586856190 586856221 2.000000e-03 54.7
20 TraesCS3B01G204700 chr2B 91.930 285 22 1 3738 4022 37776959 37777242 8.100000e-107 398.0
21 TraesCS3B01G204700 chr2B 90.941 287 24 2 3736 4022 215842406 215842690 6.310000e-103 385.0
22 TraesCS3B01G204700 chr2B 97.222 36 0 1 2676 2711 722346295 722346261 4.340000e-05 60.2
23 TraesCS3B01G204700 chr2B 96.875 32 1 0 2676 2707 708355484 708355515 2.000000e-03 54.7
24 TraesCS3B01G204700 chr6B 90.878 296 25 2 3727 4022 31858804 31858511 2.910000e-106 396.0
25 TraesCS3B01G204700 chr6B 90.972 288 25 1 3735 4022 42927503 42927789 1.750000e-103 387.0
26 TraesCS3B01G204700 chr6B 90.941 287 25 1 3736 4022 182593221 182592936 6.310000e-103 385.0
27 TraesCS3B01G204700 chr6B 90.236 297 25 4 3728 4022 703387570 703387276 6.310000e-103 385.0
28 TraesCS3B01G204700 chr5B 89.899 297 26 4 3726 4022 637459311 637459603 2.930000e-101 379.0
29 TraesCS3B01G204700 chr2A 100.000 31 0 0 2676 2706 729207320 729207290 1.560000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G204700 chr3B 239301006 239305027 4021 False 7428.000000 7428 100.000000 1 4022 1 chr3B.!!$F1 4021
1 TraesCS3B01G204700 chr3D 162401751 162406022 4271 False 1436.733333 3666 90.790333 695 3708 3 chr3D.!!$F1 3013
2 TraesCS3B01G204700 chr3A 194693827 194695276 1449 False 2058.000000 2058 92.214000 776 2243 1 chr3A.!!$F1 1467
3 TraesCS3B01G204700 chr3A 194700710 194701541 831 False 1264.000000 1264 94.026000 2237 3073 1 chr3A.!!$F2 836
4 TraesCS3B01G204700 chr6D 162260073 162260812 739 False 850.000000 850 87.534000 1 738 1 chr6D.!!$F1 737
5 TraesCS3B01G204700 chr6A 287629878 287630602 724 False 819.000000 819 87.141000 1 725 1 chr6A.!!$F1 724
6 TraesCS3B01G204700 chr1D 15419175 15419902 727 True 819.000000 819 87.092000 1 728 1 chr1D.!!$R1 727
7 TraesCS3B01G204700 chr4D 109369659 109370387 728 False 813.000000 813 86.939000 1 728 1 chr4D.!!$F1 727
8 TraesCS3B01G204700 chr7D 525483560 525484285 725 True 811.000000 811 86.957000 1 728 1 chr7D.!!$R2 727
9 TraesCS3B01G204700 chr7B 510188344 510189084 740 True 811.000000 811 86.595000 1 738 1 chr7B.!!$R2 737
10 TraesCS3B01G204700 chr7A 208802291 208803016 725 False 806.000000 806 86.803000 1 728 1 chr7A.!!$F1 727
11 TraesCS3B01G204700 chr7A 599546295 599547014 719 False 797.000000 797 86.731000 5 728 1 chr7A.!!$F2 723
12 TraesCS3B01G204700 chr2D 9242847 9243577 730 False 804.000000 804 86.739000 1 728 1 chr2D.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 946 1.215673 TGCTACCCTCTCTCGGAGATT 59.784 52.381 8.39 0.0 44.45 2.40 F
1087 1134 0.321564 CTCCCACACAAAGGCGATGA 60.322 55.000 0.00 0.0 0.00 2.92 F
1271 1318 0.514691 CGCTTCAGCCTTCTTGACAC 59.485 55.000 0.00 0.0 37.91 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2669 2720 0.035630 GATGAAGTGGAGCAGTGCCT 60.036 55.0 12.58 0.0 0.0 4.75 R
2707 2758 0.250338 GCTTCTTTCCTGGTCGTGGT 60.250 55.0 0.00 0.0 0.0 4.16 R
3221 4579 0.249911 GGACCTTTGCTCGTGTCAGT 60.250 55.0 0.00 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.800231 ATTCCAAAATTTTGTTGCTATTTTGC 57.200 26.923 25.25 0.00 43.12 3.68
43 44 7.565323 TCCAAAATTTTGTTGCTATTTTGCT 57.435 28.000 25.25 0.00 43.12 3.91
76 78 6.156519 GGAACTTGTAAAAAGTAGCCCATTG 58.843 40.000 0.00 0.00 0.00 2.82
80 82 7.561251 ACTTGTAAAAAGTAGCCCATTGTTTT 58.439 30.769 0.00 0.00 0.00 2.43
81 83 8.044309 ACTTGTAAAAAGTAGCCCATTGTTTTT 58.956 29.630 0.00 0.00 35.21 1.94
134 144 9.705290 TTGGGATTTCTAAAAAGAAAATAGCAC 57.295 29.630 4.80 0.00 40.60 4.40
519 541 7.172361 GGAAGAGTAGATTGAATAACTCATGGC 59.828 40.741 17.39 7.45 40.65 4.40
532 556 2.110967 CATGGCCCTTCTCTGCGTG 61.111 63.158 0.00 0.00 0.00 5.34
607 633 3.431912 CGGATTGATTTCTTCACACGTGA 59.568 43.478 25.01 0.00 37.91 4.35
630 656 6.700960 TGACGAAACCGAGAAACTAAATGTTA 59.299 34.615 0.00 0.00 38.03 2.41
673 699 7.221452 CAGAGTTTTGCTTGCACATATAATTCC 59.779 37.037 0.00 0.00 0.00 3.01
728 755 1.800032 CAACGCACGGGCATATGTT 59.200 52.632 11.77 1.88 41.24 2.71
730 757 1.373590 AACGCACGGGCATATGTTCC 61.374 55.000 11.77 5.93 41.24 3.62
733 760 2.024918 CACGGGCATATGTTCCAGC 58.975 57.895 14.58 0.00 0.00 4.85
742 769 3.313526 GCATATGTTCCAGCTACAACCTG 59.686 47.826 4.29 2.36 0.00 4.00
802 829 2.746362 GGTGTACGGGATAGATACGAGG 59.254 54.545 0.00 0.00 0.00 4.63
899 946 1.215673 TGCTACCCTCTCTCGGAGATT 59.784 52.381 8.39 0.00 44.45 2.40
990 1037 1.216710 GCGATCCGATCCCTCCATC 59.783 63.158 2.69 0.00 0.00 3.51
1010 1057 3.197790 CGCCGCCATGAAGACCTG 61.198 66.667 0.00 0.00 0.00 4.00
1011 1058 3.512516 GCCGCCATGAAGACCTGC 61.513 66.667 0.00 0.00 0.00 4.85
1087 1134 0.321564 CTCCCACACAAAGGCGATGA 60.322 55.000 0.00 0.00 0.00 2.92
1271 1318 0.514691 CGCTTCAGCCTTCTTGACAC 59.485 55.000 0.00 0.00 37.91 3.67
1272 1319 1.875576 CGCTTCAGCCTTCTTGACACT 60.876 52.381 0.00 0.00 37.91 3.55
1345 1392 2.202703 CGTCGCCGGGACCTAAAG 60.203 66.667 14.94 0.63 42.99 1.85
1346 1393 2.510918 GTCGCCGGGACCTAAAGC 60.511 66.667 2.18 0.00 39.90 3.51
1349 1396 4.851179 GCCGGGACCTAAAGCCGG 62.851 72.222 2.18 0.00 45.46 6.13
1633 1680 2.646175 CCGGTCTTCAAGGCGGAGA 61.646 63.158 0.00 0.00 0.00 3.71
1665 1712 0.736325 AGGCTGATACGTGCGTCAAC 60.736 55.000 0.00 0.00 0.00 3.18
1695 1742 2.892425 GATGCTCCGGCGTTCCAG 60.892 66.667 6.01 0.00 42.25 3.86
1701 1748 3.737172 CCGGCGTTCCAGGCTTTG 61.737 66.667 6.01 0.00 34.19 2.77
1725 1772 3.635373 TCCACTTCATATACACGGACTCC 59.365 47.826 0.00 0.00 0.00 3.85
1776 1826 3.502237 CGTGGTACGGCAGTTAAGT 57.498 52.632 0.00 0.00 38.08 2.24
1850 1900 1.922880 GCTAAACAAAACCACGGCGAC 60.923 52.381 16.62 0.00 0.00 5.19
1940 1990 2.709125 CTTCACCCTCGACGCCAACA 62.709 60.000 0.00 0.00 0.00 3.33
1941 1991 2.280524 CACCCTCGACGCCAACAA 60.281 61.111 0.00 0.00 0.00 2.83
2010 2060 1.519455 CTCGGCCATTGTCGTCTCC 60.519 63.158 2.24 0.00 41.33 3.71
2079 2129 1.600058 AGATGATGCTCCAAAGGGGA 58.400 50.000 0.00 0.00 45.89 4.81
2121 2171 2.515398 CAGGTTGGAGGCCACACA 59.485 61.111 5.01 0.00 30.78 3.72
2232 2282 1.083080 CGACGTCGTGCATGCAAAA 60.083 52.632 29.08 10.83 34.11 2.44
2296 2346 2.441410 TGTGTGCTTTCACCAAAGACA 58.559 42.857 0.00 0.00 41.60 3.41
2321 2371 1.014352 ACTTTCACCAAGCACGACAC 58.986 50.000 0.00 0.00 35.65 3.67
2322 2372 1.299541 CTTTCACCAAGCACGACACT 58.700 50.000 0.00 0.00 0.00 3.55
2632 2683 3.340814 TGAAGGAGAACAAGATGAGGC 57.659 47.619 0.00 0.00 0.00 4.70
2633 2684 2.909006 TGAAGGAGAACAAGATGAGGCT 59.091 45.455 0.00 0.00 0.00 4.58
2726 2777 0.250338 ACCACGACCAGGAAAGAAGC 60.250 55.000 0.00 0.00 0.00 3.86
2730 2781 0.319555 CGACCAGGAAAGAAGCGACA 60.320 55.000 0.00 0.00 0.00 4.35
2784 2835 3.149981 CAGATACGACATGGAGAGGCTA 58.850 50.000 0.00 0.00 0.00 3.93
2799 2850 1.202927 AGGCTAAAGCTTGTCTGCCAA 60.203 47.619 24.31 0.00 42.46 4.52
2874 2925 2.125512 GAGCAGCACCAGTACCCG 60.126 66.667 0.00 0.00 0.00 5.28
2901 2952 2.737376 GAGGCCGTCTTCGCGTTT 60.737 61.111 5.77 0.00 35.54 3.60
2931 2982 1.601759 GCCTGCCAACTTGAGAGCA 60.602 57.895 0.00 0.00 0.00 4.26
2965 3016 2.654749 TGGTTACGAGCATCTGACTG 57.345 50.000 0.00 0.00 0.00 3.51
3022 3073 1.142748 CTCGCAGCAACCCTCTAGG 59.857 63.158 0.00 0.00 43.78 3.02
3038 3089 5.426185 CCCTCTAGGTAGACCTATACGAGAT 59.574 48.000 18.45 0.00 46.71 2.75
3052 3103 7.877097 ACCTATACGAGATATCAAGTAGACGTT 59.123 37.037 5.32 0.00 34.70 3.99
3062 3113 8.684973 ATATCAAGTAGACGTTGTGTTACTTC 57.315 34.615 0.00 0.00 34.79 3.01
3081 3132 3.263489 TCGAGGGTGTGTTTTGTTGTA 57.737 42.857 0.00 0.00 0.00 2.41
3087 3138 3.181484 GGGTGTGTTTTGTTGTAGGTTCC 60.181 47.826 0.00 0.00 0.00 3.62
3097 3148 3.329520 TGTTGTAGGTTCCTGCCTATGTT 59.670 43.478 1.12 0.00 42.46 2.71
3133 3184 7.687005 TTTTTACATAAAAGTTGGCTTGTCG 57.313 32.000 0.00 0.00 36.62 4.35
3149 3200 5.342259 GGCTTGTCGTTTTTATGTTGATGTC 59.658 40.000 0.00 0.00 0.00 3.06
3151 3202 6.086765 GCTTGTCGTTTTTATGTTGATGTCTG 59.913 38.462 0.00 0.00 0.00 3.51
3153 3204 5.049060 TGTCGTTTTTATGTTGATGTCTGGG 60.049 40.000 0.00 0.00 0.00 4.45
3198 4556 8.588472 TGAATTATATGGTCCACAGTCATAGAG 58.412 37.037 0.00 0.00 0.00 2.43
3201 4559 4.744795 ATGGTCCACAGTCATAGAGTTC 57.255 45.455 0.00 0.00 0.00 3.01
3229 4587 4.799678 AGAACTGTGAAGATACTGACACG 58.200 43.478 0.00 0.00 36.25 4.49
3259 4617 3.649843 TCCAATACGGATGGTCTAAGGT 58.350 45.455 3.74 0.00 39.64 3.50
3260 4618 4.035112 TCCAATACGGATGGTCTAAGGTT 58.965 43.478 3.74 0.00 39.64 3.50
3261 4619 4.472108 TCCAATACGGATGGTCTAAGGTTT 59.528 41.667 3.74 0.00 39.64 3.27
3262 4620 5.045432 TCCAATACGGATGGTCTAAGGTTTT 60.045 40.000 3.74 0.00 39.64 2.43
3263 4621 5.650703 CCAATACGGATGGTCTAAGGTTTTT 59.349 40.000 0.00 0.00 36.56 1.94
3264 4622 6.183360 CCAATACGGATGGTCTAAGGTTTTTC 60.183 42.308 0.00 0.00 36.56 2.29
3265 4623 4.635699 ACGGATGGTCTAAGGTTTTTCT 57.364 40.909 0.00 0.00 0.00 2.52
3266 4624 4.981812 ACGGATGGTCTAAGGTTTTTCTT 58.018 39.130 0.00 0.00 0.00 2.52
3267 4625 5.382616 ACGGATGGTCTAAGGTTTTTCTTT 58.617 37.500 0.00 0.00 0.00 2.52
3268 4626 5.831525 ACGGATGGTCTAAGGTTTTTCTTTT 59.168 36.000 0.00 0.00 0.00 2.27
3269 4627 6.999871 ACGGATGGTCTAAGGTTTTTCTTTTA 59.000 34.615 0.00 0.00 0.00 1.52
3270 4628 7.668469 ACGGATGGTCTAAGGTTTTTCTTTTAT 59.332 33.333 0.00 0.00 0.00 1.40
3271 4629 9.169592 CGGATGGTCTAAGGTTTTTCTTTTATA 57.830 33.333 0.00 0.00 0.00 0.98
3339 4697 4.336280 AGTTCAGGGTTAGCCTCATTTTC 58.664 43.478 0.00 0.00 34.45 2.29
3341 4699 1.401905 CAGGGTTAGCCTCATTTTCGC 59.598 52.381 0.00 0.00 34.45 4.70
3360 4718 2.863740 CGCAAGGAAAACAAAAGAACCC 59.136 45.455 0.00 0.00 0.00 4.11
3417 4775 1.684142 TGCGAACATTTTGCATGACG 58.316 45.000 0.00 0.00 44.84 4.35
3443 4801 1.946745 TCGCAGAACACATGACAACA 58.053 45.000 0.00 0.00 0.00 3.33
3489 4847 4.329528 GCAGAAATTGTTGTGTTTGCTTCA 59.670 37.500 0.00 0.00 30.72 3.02
3516 4876 4.462508 TTGCCATACTCTCAAGTCTCAG 57.537 45.455 0.00 0.00 36.92 3.35
3529 4889 3.191078 AGTCTCAGCATATGCAGGAAC 57.809 47.619 28.62 20.05 45.16 3.62
3564 4924 0.859232 CCGAAACCGATATTCCAGCG 59.141 55.000 0.00 0.00 35.28 5.18
3594 4956 5.890110 CGAAGCATACTGTTCGATACAAT 57.110 39.130 0.00 0.00 46.78 2.71
3595 4957 5.894952 CGAAGCATACTGTTCGATACAATC 58.105 41.667 0.00 0.00 46.78 2.67
3611 4973 8.148351 TCGATACAATCCTAGGGAAAGTTTATG 58.852 37.037 9.46 0.00 34.34 1.90
3612 4974 7.095187 CGATACAATCCTAGGGAAAGTTTATGC 60.095 40.741 9.46 0.00 34.34 3.14
3620 4982 2.496070 GGGAAAGTTTATGCCAAGGGAC 59.504 50.000 0.00 0.00 0.00 4.46
3627 4989 2.252072 TATGCCAAGGGACGAGCCAC 62.252 60.000 0.00 0.00 38.95 5.01
3645 5007 0.181114 ACAAACCTGCAGTCTGCTCA 59.819 50.000 24.76 5.54 45.31 4.26
3653 5015 1.812922 CAGTCTGCTCATGCCGGTC 60.813 63.158 1.90 0.00 38.71 4.79
3682 5044 3.141398 GTGTCACTCCATCAAGCTTTGA 58.859 45.455 0.00 0.00 45.01 2.69
3693 5055 4.836125 TCAAGCTTTGATGTGAAACTCC 57.164 40.909 0.00 0.00 33.81 3.85
3723 5086 4.237445 CCTGGCAGGCATGAGAAG 57.763 61.111 22.68 0.00 0.00 2.85
3724 5087 1.605992 CCTGGCAGGCATGAGAAGA 59.394 57.895 22.68 0.00 0.00 2.87
3725 5088 0.183014 CCTGGCAGGCATGAGAAGAT 59.817 55.000 22.68 0.00 0.00 2.40
3726 5089 1.409802 CCTGGCAGGCATGAGAAGATT 60.410 52.381 22.68 0.00 0.00 2.40
3727 5090 2.158711 CCTGGCAGGCATGAGAAGATTA 60.159 50.000 22.68 0.00 0.00 1.75
3728 5091 3.548770 CTGGCAGGCATGAGAAGATTAA 58.451 45.455 6.61 0.00 0.00 1.40
3729 5092 3.949754 CTGGCAGGCATGAGAAGATTAAA 59.050 43.478 6.61 0.00 0.00 1.52
3730 5093 4.343231 TGGCAGGCATGAGAAGATTAAAA 58.657 39.130 0.62 0.00 0.00 1.52
3731 5094 4.771577 TGGCAGGCATGAGAAGATTAAAAA 59.228 37.500 0.62 0.00 0.00 1.94
3732 5095 5.105063 GGCAGGCATGAGAAGATTAAAAAC 58.895 41.667 0.62 0.00 0.00 2.43
3733 5096 5.336690 GGCAGGCATGAGAAGATTAAAAACA 60.337 40.000 0.62 0.00 0.00 2.83
3734 5097 6.158598 GCAGGCATGAGAAGATTAAAAACAA 58.841 36.000 0.62 0.00 0.00 2.83
3735 5098 6.089954 GCAGGCATGAGAAGATTAAAAACAAC 59.910 38.462 0.62 0.00 0.00 3.32
3736 5099 6.306356 CAGGCATGAGAAGATTAAAAACAACG 59.694 38.462 0.00 0.00 0.00 4.10
3737 5100 5.572896 GGCATGAGAAGATTAAAAACAACGG 59.427 40.000 0.00 0.00 0.00 4.44
3738 5101 6.378582 GCATGAGAAGATTAAAAACAACGGA 58.621 36.000 0.00 0.00 0.00 4.69
3739 5102 6.861055 GCATGAGAAGATTAAAAACAACGGAA 59.139 34.615 0.00 0.00 0.00 4.30
3740 5103 7.381139 GCATGAGAAGATTAAAAACAACGGAAA 59.619 33.333 0.00 0.00 0.00 3.13
3741 5104 8.690840 CATGAGAAGATTAAAAACAACGGAAAC 58.309 33.333 0.00 0.00 0.00 2.78
3742 5105 7.763356 TGAGAAGATTAAAAACAACGGAAACA 58.237 30.769 0.00 0.00 0.00 2.83
3743 5106 7.698970 TGAGAAGATTAAAAACAACGGAAACAC 59.301 33.333 0.00 0.00 0.00 3.32
3744 5107 7.768240 AGAAGATTAAAAACAACGGAAACACT 58.232 30.769 0.00 0.00 0.00 3.55
3745 5108 8.895737 AGAAGATTAAAAACAACGGAAACACTA 58.104 29.630 0.00 0.00 0.00 2.74
3746 5109 9.505995 GAAGATTAAAAACAACGGAAACACTAA 57.494 29.630 0.00 0.00 0.00 2.24
3747 5110 8.845942 AGATTAAAAACAACGGAAACACTAAC 57.154 30.769 0.00 0.00 0.00 2.34
3748 5111 7.641020 AGATTAAAAACAACGGAAACACTAACG 59.359 33.333 0.00 0.00 0.00 3.18
3749 5112 2.742954 AACAACGGAAACACTAACGC 57.257 45.000 0.00 0.00 0.00 4.84
3750 5113 0.939419 ACAACGGAAACACTAACGCC 59.061 50.000 0.00 0.00 0.00 5.68
3751 5114 0.938713 CAACGGAAACACTAACGCCA 59.061 50.000 0.00 0.00 0.00 5.69
3752 5115 1.331138 CAACGGAAACACTAACGCCAA 59.669 47.619 0.00 0.00 0.00 4.52
3753 5116 0.939419 ACGGAAACACTAACGCCAAC 59.061 50.000 0.00 0.00 0.00 3.77
3754 5117 0.938713 CGGAAACACTAACGCCAACA 59.061 50.000 0.00 0.00 0.00 3.33
3755 5118 1.333435 CGGAAACACTAACGCCAACAC 60.333 52.381 0.00 0.00 0.00 3.32
3756 5119 1.333435 GGAAACACTAACGCCAACACG 60.333 52.381 0.00 0.00 39.50 4.49
3766 5129 3.206246 CCAACACGTGTGGGCGTT 61.206 61.111 28.69 5.76 43.83 4.84
3767 5130 1.888172 CCAACACGTGTGGGCGTTA 60.888 57.895 28.69 0.00 43.83 3.18
3768 5131 1.277440 CAACACGTGTGGGCGTTAC 59.723 57.895 24.16 0.00 43.83 2.50
3769 5132 1.144496 AACACGTGTGGGCGTTACT 59.856 52.632 24.16 0.00 43.83 2.24
3770 5133 0.877213 AACACGTGTGGGCGTTACTC 60.877 55.000 24.16 0.00 43.83 2.59
3771 5134 1.300311 CACGTGTGGGCGTTACTCA 60.300 57.895 7.58 0.00 43.83 3.41
3772 5135 0.876777 CACGTGTGGGCGTTACTCAA 60.877 55.000 7.58 0.00 43.83 3.02
3773 5136 0.877213 ACGTGTGGGCGTTACTCAAC 60.877 55.000 0.00 0.00 43.04 3.18
3774 5137 0.599204 CGTGTGGGCGTTACTCAACT 60.599 55.000 0.00 0.00 32.09 3.16
3775 5138 1.145803 GTGTGGGCGTTACTCAACTC 58.854 55.000 0.00 0.00 32.09 3.01
3776 5139 0.319211 TGTGGGCGTTACTCAACTCG 60.319 55.000 0.00 0.00 32.09 4.18
3777 5140 0.319297 GTGGGCGTTACTCAACTCGT 60.319 55.000 0.00 0.00 32.09 4.18
3778 5141 0.038892 TGGGCGTTACTCAACTCGTC 60.039 55.000 0.00 0.00 32.09 4.20
3779 5142 0.735287 GGGCGTTACTCAACTCGTCC 60.735 60.000 0.00 0.00 40.65 4.79
3780 5143 0.038892 GGCGTTACTCAACTCGTCCA 60.039 55.000 0.00 0.00 32.09 4.02
3781 5144 1.058404 GCGTTACTCAACTCGTCCAC 58.942 55.000 0.00 0.00 32.09 4.02
3782 5145 1.601162 GCGTTACTCAACTCGTCCACA 60.601 52.381 0.00 0.00 32.09 4.17
3783 5146 2.049228 CGTTACTCAACTCGTCCACAC 58.951 52.381 0.00 0.00 32.09 3.82
3785 5148 0.039798 TACTCAACTCGTCCACACGC 60.040 55.000 0.00 0.00 46.28 5.34
3786 5149 2.022129 CTCAACTCGTCCACACGCC 61.022 63.158 0.00 0.00 46.28 5.68
3787 5150 2.029073 CAACTCGTCCACACGCCT 59.971 61.111 0.00 0.00 46.28 5.52
3788 5151 1.594293 CAACTCGTCCACACGCCTT 60.594 57.895 0.00 0.00 46.28 4.35
3789 5152 1.594293 AACTCGTCCACACGCCTTG 60.594 57.895 0.00 0.00 46.28 3.61
3790 5153 2.023414 AACTCGTCCACACGCCTTGA 62.023 55.000 0.00 0.00 46.28 3.02
3791 5154 1.079819 CTCGTCCACACGCCTTGAT 60.080 57.895 0.00 0.00 46.28 2.57
3792 5155 1.078759 CTCGTCCACACGCCTTGATC 61.079 60.000 0.00 0.00 46.28 2.92
3793 5156 2.444624 CGTCCACACGCCTTGATCG 61.445 63.158 0.00 0.00 39.69 3.69
3794 5157 1.374252 GTCCACACGCCTTGATCGT 60.374 57.895 0.00 0.00 41.28 3.73
3795 5158 1.080093 TCCACACGCCTTGATCGTC 60.080 57.895 0.00 0.00 38.19 4.20
3796 5159 2.444624 CCACACGCCTTGATCGTCG 61.445 63.158 0.00 0.00 38.19 5.12
3797 5160 1.733041 CACACGCCTTGATCGTCGT 60.733 57.895 0.00 0.00 38.19 4.34
3798 5161 1.443872 ACACGCCTTGATCGTCGTC 60.444 57.895 0.00 0.00 38.19 4.20
3799 5162 2.158959 CACGCCTTGATCGTCGTCC 61.159 63.158 0.00 0.00 38.19 4.79
3800 5163 2.180769 CGCCTTGATCGTCGTCCA 59.819 61.111 0.00 0.00 0.00 4.02
3801 5164 1.874019 CGCCTTGATCGTCGTCCAG 60.874 63.158 0.00 0.00 0.00 3.86
3802 5165 1.215647 GCCTTGATCGTCGTCCAGT 59.784 57.895 0.00 0.00 0.00 4.00
3803 5166 1.078759 GCCTTGATCGTCGTCCAGTG 61.079 60.000 0.00 0.00 0.00 3.66
3804 5167 1.078759 CCTTGATCGTCGTCCAGTGC 61.079 60.000 0.00 0.00 0.00 4.40
3805 5168 1.078759 CTTGATCGTCGTCCAGTGCC 61.079 60.000 0.00 0.00 0.00 5.01
3806 5169 1.532604 TTGATCGTCGTCCAGTGCCT 61.533 55.000 0.00 0.00 0.00 4.75
3807 5170 1.215647 GATCGTCGTCCAGTGCCTT 59.784 57.895 0.00 0.00 0.00 4.35
3808 5171 0.389948 GATCGTCGTCCAGTGCCTTT 60.390 55.000 0.00 0.00 0.00 3.11
3809 5172 0.034896 ATCGTCGTCCAGTGCCTTTT 59.965 50.000 0.00 0.00 0.00 2.27
3810 5173 0.878523 TCGTCGTCCAGTGCCTTTTG 60.879 55.000 0.00 0.00 0.00 2.44
3811 5174 1.282875 GTCGTCCAGTGCCTTTTGC 59.717 57.895 0.00 0.00 41.77 3.68
3822 5185 2.704725 GCCTTTTGCACGAATCTTGA 57.295 45.000 0.00 0.00 40.77 3.02
3823 5186 2.319472 GCCTTTTGCACGAATCTTGAC 58.681 47.619 0.00 0.00 40.77 3.18
3824 5187 2.287547 GCCTTTTGCACGAATCTTGACA 60.288 45.455 0.00 0.00 40.77 3.58
3825 5188 3.300009 CCTTTTGCACGAATCTTGACAC 58.700 45.455 0.00 0.00 0.00 3.67
3826 5189 2.661504 TTTGCACGAATCTTGACACG 57.338 45.000 0.00 0.00 0.00 4.49
3827 5190 1.859383 TTGCACGAATCTTGACACGA 58.141 45.000 0.00 0.00 0.00 4.35
3828 5191 1.859383 TGCACGAATCTTGACACGAA 58.141 45.000 0.00 0.00 0.00 3.85
3829 5192 2.205911 TGCACGAATCTTGACACGAAA 58.794 42.857 0.00 0.00 0.00 3.46
3830 5193 2.609916 TGCACGAATCTTGACACGAAAA 59.390 40.909 0.00 0.00 0.00 2.29
3831 5194 3.218398 GCACGAATCTTGACACGAAAAG 58.782 45.455 0.00 0.00 0.00 2.27
3832 5195 3.799035 CACGAATCTTGACACGAAAAGG 58.201 45.455 0.00 0.00 0.00 3.11
3833 5196 3.247648 CACGAATCTTGACACGAAAAGGT 59.752 43.478 0.00 0.00 0.00 3.50
3834 5197 3.875134 ACGAATCTTGACACGAAAAGGTT 59.125 39.130 0.00 0.00 29.40 3.50
3835 5198 4.211389 CGAATCTTGACACGAAAAGGTTG 58.789 43.478 0.00 0.00 26.89 3.77
3836 5199 4.025229 CGAATCTTGACACGAAAAGGTTGA 60.025 41.667 0.00 0.00 26.89 3.18
3837 5200 5.334105 CGAATCTTGACACGAAAAGGTTGAT 60.334 40.000 0.00 0.00 26.89 2.57
3838 5201 6.391227 AATCTTGACACGAAAAGGTTGATT 57.609 33.333 0.00 0.00 0.00 2.57
3839 5202 5.828299 TCTTGACACGAAAAGGTTGATTT 57.172 34.783 0.00 0.00 0.00 2.17
3840 5203 6.202516 TCTTGACACGAAAAGGTTGATTTT 57.797 33.333 0.00 0.00 35.12 1.82
3841 5204 6.033341 TCTTGACACGAAAAGGTTGATTTTG 58.967 36.000 0.00 0.00 32.62 2.44
3842 5205 5.317733 TGACACGAAAAGGTTGATTTTGT 57.682 34.783 0.00 0.00 35.30 2.83
3845 5208 5.374142 CACGAAAAGGTTGATTTTGTGTG 57.626 39.130 9.99 4.87 42.93 3.82
3846 5209 3.862845 ACGAAAAGGTTGATTTTGTGTGC 59.137 39.130 0.00 0.00 34.02 4.57
3847 5210 3.245048 CGAAAAGGTTGATTTTGTGTGCC 59.755 43.478 0.00 0.00 32.62 5.01
3848 5211 3.902881 AAAGGTTGATTTTGTGTGCCA 57.097 38.095 0.00 0.00 0.00 4.92
3849 5212 2.888834 AGGTTGATTTTGTGTGCCAC 57.111 45.000 0.00 0.00 34.56 5.01
3850 5213 1.066908 AGGTTGATTTTGTGTGCCACG 59.933 47.619 0.00 0.00 37.14 4.94
3851 5214 1.202359 GGTTGATTTTGTGTGCCACGT 60.202 47.619 0.00 0.00 37.14 4.49
3852 5215 2.033550 GGTTGATTTTGTGTGCCACGTA 59.966 45.455 0.00 0.00 37.14 3.57
3853 5216 3.296628 GTTGATTTTGTGTGCCACGTAG 58.703 45.455 0.00 0.00 37.14 3.51
3854 5217 1.876799 TGATTTTGTGTGCCACGTAGG 59.123 47.619 0.00 0.00 37.14 3.18
3855 5218 2.147958 GATTTTGTGTGCCACGTAGGA 58.852 47.619 8.04 0.00 41.22 2.94
3856 5219 1.301423 TTTTGTGTGCCACGTAGGAC 58.699 50.000 0.00 0.00 41.22 3.85
3866 5229 4.143333 CGTAGGACGGGGCTGGTG 62.143 72.222 0.00 0.00 38.08 4.17
3867 5230 3.001406 GTAGGACGGGGCTGGTGT 61.001 66.667 0.00 0.00 0.00 4.16
3868 5231 3.000819 TAGGACGGGGCTGGTGTG 61.001 66.667 0.00 0.00 0.00 3.82
3869 5232 3.839046 TAGGACGGGGCTGGTGTGT 62.839 63.158 0.00 0.00 0.00 3.72
3874 5237 4.974721 GGGGCTGGTGTGTGGGTG 62.975 72.222 0.00 0.00 0.00 4.61
3875 5238 4.204028 GGGCTGGTGTGTGGGTGT 62.204 66.667 0.00 0.00 0.00 4.16
3876 5239 2.123897 GGCTGGTGTGTGGGTGTT 60.124 61.111 0.00 0.00 0.00 3.32
3877 5240 2.489275 GGCTGGTGTGTGGGTGTTG 61.489 63.158 0.00 0.00 0.00 3.33
3878 5241 2.489275 GCTGGTGTGTGGGTGTTGG 61.489 63.158 0.00 0.00 0.00 3.77
3879 5242 1.225983 CTGGTGTGTGGGTGTTGGA 59.774 57.895 0.00 0.00 0.00 3.53
3880 5243 0.819259 CTGGTGTGTGGGTGTTGGAG 60.819 60.000 0.00 0.00 0.00 3.86
3881 5244 1.275421 TGGTGTGTGGGTGTTGGAGA 61.275 55.000 0.00 0.00 0.00 3.71
3882 5245 0.535102 GGTGTGTGGGTGTTGGAGAG 60.535 60.000 0.00 0.00 0.00 3.20
3883 5246 0.180406 GTGTGTGGGTGTTGGAGAGT 59.820 55.000 0.00 0.00 0.00 3.24
3884 5247 0.916086 TGTGTGGGTGTTGGAGAGTT 59.084 50.000 0.00 0.00 0.00 3.01
3885 5248 1.283613 TGTGTGGGTGTTGGAGAGTTT 59.716 47.619 0.00 0.00 0.00 2.66
3886 5249 1.676006 GTGTGGGTGTTGGAGAGTTTG 59.324 52.381 0.00 0.00 0.00 2.93
3887 5250 0.668535 GTGGGTGTTGGAGAGTTTGC 59.331 55.000 0.00 0.00 0.00 3.68
3888 5251 0.467290 TGGGTGTTGGAGAGTTTGCC 60.467 55.000 0.00 0.00 0.00 4.52
3889 5252 1.179174 GGGTGTTGGAGAGTTTGCCC 61.179 60.000 0.00 0.00 0.00 5.36
3890 5253 0.467290 GGTGTTGGAGAGTTTGCCCA 60.467 55.000 0.00 0.00 0.00 5.36
3891 5254 0.668535 GTGTTGGAGAGTTTGCCCAC 59.331 55.000 0.00 0.00 0.00 4.61
3892 5255 0.257328 TGTTGGAGAGTTTGCCCACA 59.743 50.000 0.00 0.00 0.00 4.17
3893 5256 0.668535 GTTGGAGAGTTTGCCCACAC 59.331 55.000 0.00 0.00 0.00 3.82
3894 5257 0.817634 TTGGAGAGTTTGCCCACACG 60.818 55.000 0.00 0.00 0.00 4.49
3895 5258 2.617274 GGAGAGTTTGCCCACACGC 61.617 63.158 0.00 0.00 0.00 5.34
3896 5259 1.598130 GAGAGTTTGCCCACACGCT 60.598 57.895 0.00 0.00 0.00 5.07
3897 5260 0.320421 GAGAGTTTGCCCACACGCTA 60.320 55.000 0.00 0.00 0.00 4.26
3898 5261 0.320771 AGAGTTTGCCCACACGCTAG 60.321 55.000 0.00 0.00 0.00 3.42
3899 5262 1.912371 GAGTTTGCCCACACGCTAGC 61.912 60.000 4.06 4.06 0.00 3.42
3900 5263 2.112087 TTTGCCCACACGCTAGCA 59.888 55.556 16.45 0.00 0.00 3.49
3901 5264 1.303236 TTTGCCCACACGCTAGCAT 60.303 52.632 16.45 0.00 34.72 3.79
3902 5265 1.305219 TTTGCCCACACGCTAGCATC 61.305 55.000 16.45 0.00 34.72 3.91
3903 5266 2.125147 GCCCACACGCTAGCATCA 60.125 61.111 16.45 0.00 0.00 3.07
3904 5267 1.524621 GCCCACACGCTAGCATCAT 60.525 57.895 16.45 0.00 0.00 2.45
3905 5268 1.779025 GCCCACACGCTAGCATCATG 61.779 60.000 16.45 9.43 0.00 3.07
3906 5269 1.645455 CCACACGCTAGCATCATGC 59.355 57.895 16.45 0.00 45.46 4.06
3915 5278 4.104143 GCATCATGCTGCTTTGCC 57.896 55.556 14.17 0.00 40.96 4.52
3916 5279 1.216977 GCATCATGCTGCTTTGCCA 59.783 52.632 14.17 0.00 40.96 4.92
3917 5280 0.806102 GCATCATGCTGCTTTGCCAG 60.806 55.000 14.17 0.00 40.96 4.85
3930 5293 3.506108 GCCAGCTGCACTATGTGG 58.494 61.111 8.66 0.08 40.77 4.17
3931 5294 2.117156 GCCAGCTGCACTATGTGGG 61.117 63.158 8.66 0.00 40.77 4.61
3937 5300 4.617875 GCACTATGTGGGCGAACT 57.382 55.556 0.00 0.00 34.27 3.01
3938 5301 3.752796 GCACTATGTGGGCGAACTA 57.247 52.632 0.00 0.00 34.27 2.24
3939 5302 2.018542 GCACTATGTGGGCGAACTAA 57.981 50.000 0.00 0.00 34.27 2.24
3940 5303 2.561569 GCACTATGTGGGCGAACTAAT 58.438 47.619 0.00 0.00 34.27 1.73
3941 5304 2.943033 GCACTATGTGGGCGAACTAATT 59.057 45.455 0.00 0.00 34.27 1.40
3942 5305 3.377172 GCACTATGTGGGCGAACTAATTT 59.623 43.478 0.00 0.00 34.27 1.82
3943 5306 4.495844 GCACTATGTGGGCGAACTAATTTC 60.496 45.833 0.00 0.00 34.27 2.17
3944 5307 4.876107 CACTATGTGGGCGAACTAATTTCT 59.124 41.667 0.00 0.00 31.20 2.52
3945 5308 6.046593 CACTATGTGGGCGAACTAATTTCTA 58.953 40.000 0.00 0.00 31.20 2.10
3946 5309 6.018994 CACTATGTGGGCGAACTAATTTCTAC 60.019 42.308 0.00 0.00 31.20 2.59
3947 5310 3.602483 TGTGGGCGAACTAATTTCTACC 58.398 45.455 0.00 0.00 31.20 3.18
3948 5311 2.941064 GTGGGCGAACTAATTTCTACCC 59.059 50.000 0.00 0.00 43.80 3.69
3949 5312 3.271055 GGGCGAACTAATTTCTACCCA 57.729 47.619 6.96 0.00 43.34 4.51
3950 5313 2.941064 GGGCGAACTAATTTCTACCCAC 59.059 50.000 6.96 0.00 43.34 4.61
3951 5314 3.602483 GGCGAACTAATTTCTACCCACA 58.398 45.455 0.00 0.00 31.20 4.17
3952 5315 3.373130 GGCGAACTAATTTCTACCCACAC 59.627 47.826 0.00 0.00 31.20 3.82
3953 5316 3.998341 GCGAACTAATTTCTACCCACACA 59.002 43.478 0.00 0.00 31.20 3.72
3954 5317 4.453136 GCGAACTAATTTCTACCCACACAA 59.547 41.667 0.00 0.00 31.20 3.33
3955 5318 5.123344 GCGAACTAATTTCTACCCACACAAT 59.877 40.000 0.00 0.00 31.20 2.71
3956 5319 6.674760 GCGAACTAATTTCTACCCACACAATC 60.675 42.308 0.00 0.00 31.20 2.67
3957 5320 6.370442 CGAACTAATTTCTACCCACACAATCA 59.630 38.462 0.00 0.00 31.20 2.57
3958 5321 7.413000 CGAACTAATTTCTACCCACACAATCAG 60.413 40.741 0.00 0.00 31.20 2.90
3959 5322 5.648092 ACTAATTTCTACCCACACAATCAGC 59.352 40.000 0.00 0.00 0.00 4.26
3960 5323 2.489938 TTCTACCCACACAATCAGCC 57.510 50.000 0.00 0.00 0.00 4.85
3961 5324 1.357137 TCTACCCACACAATCAGCCA 58.643 50.000 0.00 0.00 0.00 4.75
3962 5325 1.003118 TCTACCCACACAATCAGCCAC 59.997 52.381 0.00 0.00 0.00 5.01
3963 5326 0.037590 TACCCACACAATCAGCCACC 59.962 55.000 0.00 0.00 0.00 4.61
3964 5327 1.075482 CCCACACAATCAGCCACCT 59.925 57.895 0.00 0.00 0.00 4.00
3965 5328 0.327924 CCCACACAATCAGCCACCTA 59.672 55.000 0.00 0.00 0.00 3.08
3966 5329 1.679944 CCCACACAATCAGCCACCTAG 60.680 57.143 0.00 0.00 0.00 3.02
3967 5330 1.003580 CCACACAATCAGCCACCTAGT 59.996 52.381 0.00 0.00 0.00 2.57
3968 5331 2.553028 CCACACAATCAGCCACCTAGTT 60.553 50.000 0.00 0.00 0.00 2.24
3969 5332 2.744202 CACACAATCAGCCACCTAGTTC 59.256 50.000 0.00 0.00 0.00 3.01
3970 5333 2.371841 ACACAATCAGCCACCTAGTTCA 59.628 45.455 0.00 0.00 0.00 3.18
3971 5334 3.009473 ACACAATCAGCCACCTAGTTCAT 59.991 43.478 0.00 0.00 0.00 2.57
3972 5335 3.376234 CACAATCAGCCACCTAGTTCATG 59.624 47.826 0.00 0.00 0.00 3.07
3973 5336 2.338577 ATCAGCCACCTAGTTCATGC 57.661 50.000 0.00 0.00 0.00 4.06
3974 5337 0.108186 TCAGCCACCTAGTTCATGCG 60.108 55.000 0.00 0.00 0.00 4.73
3975 5338 1.450312 AGCCACCTAGTTCATGCGC 60.450 57.895 0.00 0.00 0.00 6.09
3976 5339 1.745115 GCCACCTAGTTCATGCGCA 60.745 57.895 14.96 14.96 0.00 6.09
3977 5340 1.097547 GCCACCTAGTTCATGCGCAT 61.098 55.000 19.28 19.28 0.00 4.73
3978 5341 0.659427 CCACCTAGTTCATGCGCATG 59.341 55.000 38.48 38.48 40.09 4.06
3979 5342 0.028505 CACCTAGTTCATGCGCATGC 59.971 55.000 39.11 27.92 38.65 4.06
3991 5354 2.511600 GCATGCGGGCGAACTACT 60.512 61.111 0.00 0.00 0.00 2.57
3992 5355 2.106683 GCATGCGGGCGAACTACTT 61.107 57.895 0.00 0.00 0.00 2.24
3993 5356 1.644786 GCATGCGGGCGAACTACTTT 61.645 55.000 0.00 0.00 0.00 2.66
3994 5357 0.802494 CATGCGGGCGAACTACTTTT 59.198 50.000 0.00 0.00 0.00 2.27
3995 5358 1.084289 ATGCGGGCGAACTACTTTTC 58.916 50.000 0.00 0.00 0.00 2.29
4002 5365 1.504359 CGAACTACTTTTCGCCCACA 58.496 50.000 0.00 0.00 41.73 4.17
4003 5366 1.193874 CGAACTACTTTTCGCCCACAC 59.806 52.381 0.00 0.00 41.73 3.82
4004 5367 2.215196 GAACTACTTTTCGCCCACACA 58.785 47.619 0.00 0.00 0.00 3.72
4005 5368 2.335316 ACTACTTTTCGCCCACACAA 57.665 45.000 0.00 0.00 0.00 3.33
4006 5369 2.645802 ACTACTTTTCGCCCACACAAA 58.354 42.857 0.00 0.00 0.00 2.83
4007 5370 3.018149 ACTACTTTTCGCCCACACAAAA 58.982 40.909 0.00 0.00 0.00 2.44
4008 5371 2.287393 ACTTTTCGCCCACACAAAAC 57.713 45.000 0.00 0.00 0.00 2.43
4009 5372 1.822371 ACTTTTCGCCCACACAAAACT 59.178 42.857 0.00 0.00 0.00 2.66
4010 5373 2.159296 ACTTTTCGCCCACACAAAACTC 60.159 45.455 0.00 0.00 0.00 3.01
4011 5374 0.741915 TTTCGCCCACACAAAACTCC 59.258 50.000 0.00 0.00 0.00 3.85
4012 5375 0.106918 TTCGCCCACACAAAACTCCT 60.107 50.000 0.00 0.00 0.00 3.69
4013 5376 0.759959 TCGCCCACACAAAACTCCTA 59.240 50.000 0.00 0.00 0.00 2.94
4014 5377 1.141254 TCGCCCACACAAAACTCCTAA 59.859 47.619 0.00 0.00 0.00 2.69
4015 5378 1.535462 CGCCCACACAAAACTCCTAAG 59.465 52.381 0.00 0.00 0.00 2.18
4016 5379 2.583143 GCCCACACAAAACTCCTAAGT 58.417 47.619 0.00 0.00 37.32 2.24
4018 5381 3.243401 GCCCACACAAAACTCCTAAGTTG 60.243 47.826 0.00 0.00 45.07 3.16
4019 5382 3.951680 CCCACACAAAACTCCTAAGTTGT 59.048 43.478 0.00 0.00 45.07 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 364 7.326063 CGAACAAAATATGAAAGGGAACACTTC 59.674 37.037 0.00 0.00 0.00 3.01
348 366 6.677913 CGAACAAAATATGAAAGGGAACACT 58.322 36.000 0.00 0.00 0.00 3.55
349 367 5.344933 GCGAACAAAATATGAAAGGGAACAC 59.655 40.000 0.00 0.00 0.00 3.32
462 482 6.481643 TCCTTTCAATCGAGGGATTTTAAGT 58.518 36.000 0.00 0.00 40.90 2.24
519 541 0.674581 TCATTGCACGCAGAGAAGGG 60.675 55.000 0.00 0.00 0.00 3.95
532 556 7.901874 TTTAAGAGTTTTGTTACGTCATTGC 57.098 32.000 0.00 0.00 0.00 3.56
607 633 5.996669 AACATTTAGTTTCTCGGTTTCGT 57.003 34.783 0.00 0.00 37.03 3.85
650 676 6.070881 TGGGAATTATATGTGCAAGCAAAACT 60.071 34.615 0.00 0.00 0.00 2.66
733 760 4.503007 GCACGATATGTACACAGGTTGTAG 59.497 45.833 0.00 0.00 41.58 2.74
878 916 0.107116 TCTCCGAGAGAGGGTAGCAC 60.107 60.000 0.00 0.00 43.44 4.40
899 946 3.002102 GGTTTGTTTACCGGCGAATCTA 58.998 45.455 9.30 0.00 0.00 1.98
1139 1186 1.065102 GATAGTACTTGACGCGCCAGA 59.935 52.381 5.73 0.00 0.00 3.86
1665 1712 1.702886 GAGCATCCATACCGTCGATG 58.297 55.000 0.00 0.00 37.13 3.84
1695 1742 4.035675 GTGTATATGAAGTGGAGCAAAGCC 59.964 45.833 0.00 0.00 0.00 4.35
1701 1748 3.068307 AGTCCGTGTATATGAAGTGGAGC 59.932 47.826 0.00 0.00 0.00 4.70
1850 1900 2.887568 GCTGTCGCTGATCCACGG 60.888 66.667 4.84 0.00 0.00 4.94
1940 1990 1.420138 ACGGGAGAGAATGTTGTGGTT 59.580 47.619 0.00 0.00 0.00 3.67
1941 1991 1.002087 GACGGGAGAGAATGTTGTGGT 59.998 52.381 0.00 0.00 0.00 4.16
2079 2129 4.457496 CCGGAGGCGACATGCTGT 62.457 66.667 0.00 0.00 46.14 4.40
2121 2171 1.202651 GGGTAGTACTTGATGCGCCAT 60.203 52.381 4.18 0.00 0.00 4.40
2130 2180 0.611714 AGCCGTTGGGGTAGTACTTG 59.388 55.000 0.00 0.00 43.78 3.16
2296 2346 1.473258 TGCTTGGTGAAAGTGCACTT 58.527 45.000 26.36 26.36 38.25 3.16
2321 2371 0.891373 TCTGTCGAAGCTGAGGGAAG 59.109 55.000 0.00 0.00 0.00 3.46
2322 2372 1.561643 ATCTGTCGAAGCTGAGGGAA 58.438 50.000 0.00 0.00 0.00 3.97
2385 2436 1.300620 CCGGACGTTGAAGCAGTCA 60.301 57.895 0.00 0.00 36.68 3.41
2422 2473 3.112075 CACGCGCACCTCGTTCAT 61.112 61.111 5.73 0.00 38.19 2.57
2633 2684 0.458370 CATGTCCTCGATGTGCACGA 60.458 55.000 13.13 4.94 38.11 4.35
2669 2720 0.035630 GATGAAGTGGAGCAGTGCCT 60.036 55.000 12.58 0.00 0.00 4.75
2707 2758 0.250338 GCTTCTTTCCTGGTCGTGGT 60.250 55.000 0.00 0.00 0.00 4.16
2760 2811 3.218453 CCTCTCCATGTCGTATCTGTCT 58.782 50.000 0.00 0.00 0.00 3.41
2799 2850 1.895707 GTGCCTGCACAGCTTGTCT 60.896 57.895 16.95 0.00 45.53 3.41
2931 2982 0.818296 AACCATCGCTCGCTAAGACT 59.182 50.000 0.00 0.00 0.00 3.24
3024 3075 7.760794 CGTCTACTTGATATCTCGTATAGGTCT 59.239 40.741 3.98 0.00 0.00 3.85
3025 3076 7.545265 ACGTCTACTTGATATCTCGTATAGGTC 59.455 40.741 3.98 0.00 0.00 3.85
3038 3089 6.798476 CGAAGTAACACAACGTCTACTTGATA 59.202 38.462 10.03 0.00 34.45 2.15
3052 3103 1.758280 ACACACCCTCGAAGTAACACA 59.242 47.619 0.00 0.00 0.00 3.72
3062 3113 2.289547 CCTACAACAAAACACACCCTCG 59.710 50.000 0.00 0.00 0.00 4.63
3081 3132 2.269940 AGACAACATAGGCAGGAACCT 58.730 47.619 0.00 0.00 44.31 3.50
3087 3138 1.825090 TGGCAAGACAACATAGGCAG 58.175 50.000 0.00 0.00 0.00 4.85
3097 3148 9.606631 ACTTTTATGTAAAAATTTGGCAAGACA 57.393 25.926 0.00 0.31 35.04 3.41
3128 3179 6.434596 CCAGACATCAACATAAAAACGACAA 58.565 36.000 0.00 0.00 0.00 3.18
3133 3184 4.165779 CGCCCAGACATCAACATAAAAAC 58.834 43.478 0.00 0.00 0.00 2.43
3166 3217 4.062991 GTGGACCATATAATTCACCGGTC 58.937 47.826 2.59 0.00 41.78 4.79
3167 3218 3.456644 TGTGGACCATATAATTCACCGGT 59.543 43.478 0.00 0.00 0.00 5.28
3168 3219 4.065088 CTGTGGACCATATAATTCACCGG 58.935 47.826 0.00 0.00 0.00 5.28
3169 3220 4.703897 ACTGTGGACCATATAATTCACCG 58.296 43.478 0.00 0.00 0.00 4.94
3170 3221 5.680619 TGACTGTGGACCATATAATTCACC 58.319 41.667 0.00 0.00 0.00 4.02
3173 4531 8.589338 ACTCTATGACTGTGGACCATATAATTC 58.411 37.037 0.00 0.00 0.00 2.17
3176 4534 7.255486 CGAACTCTATGACTGTGGACCATATAA 60.255 40.741 0.00 0.00 0.00 0.98
3179 4537 4.338400 CGAACTCTATGACTGTGGACCATA 59.662 45.833 0.00 0.00 0.00 2.74
3180 4538 3.131223 CGAACTCTATGACTGTGGACCAT 59.869 47.826 0.00 0.00 0.00 3.55
3183 4541 3.190744 TCACGAACTCTATGACTGTGGAC 59.809 47.826 0.00 0.00 0.00 4.02
3198 4556 7.219154 CAGTATCTTCACAGTTCTATCACGAAC 59.781 40.741 0.00 0.00 42.73 3.95
3201 4559 6.689241 GTCAGTATCTTCACAGTTCTATCACG 59.311 42.308 0.00 0.00 0.00 4.35
3211 4569 3.175152 GCTCGTGTCAGTATCTTCACAG 58.825 50.000 0.00 0.00 0.00 3.66
3221 4579 0.249911 GGACCTTTGCTCGTGTCAGT 60.250 55.000 0.00 0.00 0.00 3.41
3229 4587 2.396590 TCCGTATTGGACCTTTGCTC 57.603 50.000 0.00 0.00 43.74 4.26
3270 4628 9.868277 CATTGAGGCCAAACAAATAAGTTTATA 57.132 29.630 5.01 0.00 39.55 0.98
3271 4629 7.334171 GCATTGAGGCCAAACAAATAAGTTTAT 59.666 33.333 5.01 0.00 39.55 1.40
3272 4630 6.648725 GCATTGAGGCCAAACAAATAAGTTTA 59.351 34.615 5.01 0.00 39.55 2.01
3273 4631 5.469760 GCATTGAGGCCAAACAAATAAGTTT 59.530 36.000 5.01 0.00 42.10 2.66
3274 4632 4.996758 GCATTGAGGCCAAACAAATAAGTT 59.003 37.500 5.01 0.00 35.67 2.66
3275 4633 4.284234 AGCATTGAGGCCAAACAAATAAGT 59.716 37.500 5.01 0.00 35.67 2.24
3276 4634 4.824289 AGCATTGAGGCCAAACAAATAAG 58.176 39.130 5.01 2.51 35.67 1.73
3277 4635 4.888326 AGCATTGAGGCCAAACAAATAA 57.112 36.364 5.01 0.00 35.67 1.40
3278 4636 4.888326 AAGCATTGAGGCCAAACAAATA 57.112 36.364 5.01 0.00 35.67 1.40
3279 4637 3.775261 AAGCATTGAGGCCAAACAAAT 57.225 38.095 5.01 0.00 35.67 2.32
3309 4667 2.911484 CTAACCCTGAACTCTGCATCC 58.089 52.381 0.00 0.00 0.00 3.51
3310 4668 2.284190 GCTAACCCTGAACTCTGCATC 58.716 52.381 0.00 0.00 0.00 3.91
3320 4678 2.939640 GCGAAAATGAGGCTAACCCTGA 60.940 50.000 0.00 0.00 46.60 3.86
3339 4697 2.863740 GGGTTCTTTTGTTTTCCTTGCG 59.136 45.455 0.00 0.00 0.00 4.85
3341 4699 4.081142 ACTGGGGTTCTTTTGTTTTCCTTG 60.081 41.667 0.00 0.00 0.00 3.61
3360 4718 1.352156 GAACGTTCGCTGGCTACTGG 61.352 60.000 13.36 0.00 0.00 4.00
3382 4740 0.376852 CGCAATTACCATGTCCCACG 59.623 55.000 0.00 0.00 0.00 4.94
3383 4741 1.745232 TCGCAATTACCATGTCCCAC 58.255 50.000 0.00 0.00 0.00 4.61
3417 4775 3.059884 TCATGTGTTCTGCGAAGAAGTC 58.940 45.455 5.94 3.34 0.00 3.01
3475 4833 5.257864 GCAATTCTTTGAAGCAAACACAAC 58.742 37.500 0.00 0.00 34.60 3.32
3489 4847 6.479884 AGACTTGAGAGTATGGCAATTCTTT 58.520 36.000 0.00 0.00 35.88 2.52
3516 4876 2.042686 TGACCAGTTCCTGCATATGC 57.957 50.000 21.09 21.09 42.50 3.14
3564 4924 4.490959 CGAACAGTATGCTTCGATGTGTTC 60.491 45.833 15.79 15.79 45.55 3.18
3575 4935 5.537300 AGGATTGTATCGAACAGTATGCT 57.463 39.130 0.00 0.00 42.53 3.79
3594 4956 4.325030 CCTTGGCATAAACTTTCCCTAGGA 60.325 45.833 11.48 0.00 39.82 2.94
3595 4957 3.954258 CCTTGGCATAAACTTTCCCTAGG 59.046 47.826 0.06 0.06 33.49 3.02
3611 4973 3.842925 TTGTGGCTCGTCCCTTGGC 62.843 63.158 0.00 0.00 0.00 4.52
3612 4974 1.228124 TTTGTGGCTCGTCCCTTGG 60.228 57.895 0.00 0.00 0.00 3.61
3620 4982 1.845809 GACTGCAGGTTTGTGGCTCG 61.846 60.000 19.93 0.00 0.00 5.03
3657 5019 1.354337 CTTGATGGAGTGACACCGCG 61.354 60.000 0.00 0.00 0.00 6.46
3662 5024 3.490439 TCAAAGCTTGATGGAGTGACA 57.510 42.857 0.00 0.00 34.08 3.58
3682 5044 4.382040 CGTACCTGAGATGGAGTTTCACAT 60.382 45.833 0.00 0.00 0.00 3.21
3708 5071 3.650281 TTAATCTTCTCATGCCTGCCA 57.350 42.857 0.00 0.00 0.00 4.92
3709 5072 4.989279 TTTTAATCTTCTCATGCCTGCC 57.011 40.909 0.00 0.00 0.00 4.85
3710 5073 5.713025 TGTTTTTAATCTTCTCATGCCTGC 58.287 37.500 0.00 0.00 0.00 4.85
3711 5074 6.306356 CGTTGTTTTTAATCTTCTCATGCCTG 59.694 38.462 0.00 0.00 0.00 4.85
3712 5075 6.381801 CGTTGTTTTTAATCTTCTCATGCCT 58.618 36.000 0.00 0.00 0.00 4.75
3713 5076 5.572896 CCGTTGTTTTTAATCTTCTCATGCC 59.427 40.000 0.00 0.00 0.00 4.40
3714 5077 6.378582 TCCGTTGTTTTTAATCTTCTCATGC 58.621 36.000 0.00 0.00 0.00 4.06
3715 5078 8.690840 GTTTCCGTTGTTTTTAATCTTCTCATG 58.309 33.333 0.00 0.00 0.00 3.07
3716 5079 8.410141 TGTTTCCGTTGTTTTTAATCTTCTCAT 58.590 29.630 0.00 0.00 0.00 2.90
3717 5080 7.698970 GTGTTTCCGTTGTTTTTAATCTTCTCA 59.301 33.333 0.00 0.00 0.00 3.27
3718 5081 7.913821 AGTGTTTCCGTTGTTTTTAATCTTCTC 59.086 33.333 0.00 0.00 0.00 2.87
3719 5082 7.768240 AGTGTTTCCGTTGTTTTTAATCTTCT 58.232 30.769 0.00 0.00 0.00 2.85
3720 5083 7.980742 AGTGTTTCCGTTGTTTTTAATCTTC 57.019 32.000 0.00 0.00 0.00 2.87
3721 5084 9.292846 GTTAGTGTTTCCGTTGTTTTTAATCTT 57.707 29.630 0.00 0.00 0.00 2.40
3722 5085 7.641020 CGTTAGTGTTTCCGTTGTTTTTAATCT 59.359 33.333 0.00 0.00 0.00 2.40
3723 5086 7.563827 GCGTTAGTGTTTCCGTTGTTTTTAATC 60.564 37.037 0.00 0.00 0.00 1.75
3724 5087 6.196910 GCGTTAGTGTTTCCGTTGTTTTTAAT 59.803 34.615 0.00 0.00 0.00 1.40
3725 5088 5.511025 GCGTTAGTGTTTCCGTTGTTTTTAA 59.489 36.000 0.00 0.00 0.00 1.52
3726 5089 5.027099 GCGTTAGTGTTTCCGTTGTTTTTA 58.973 37.500 0.00 0.00 0.00 1.52
3727 5090 3.853103 GCGTTAGTGTTTCCGTTGTTTTT 59.147 39.130 0.00 0.00 0.00 1.94
3728 5091 3.428163 GCGTTAGTGTTTCCGTTGTTTT 58.572 40.909 0.00 0.00 0.00 2.43
3729 5092 2.223317 GGCGTTAGTGTTTCCGTTGTTT 60.223 45.455 0.00 0.00 0.00 2.83
3730 5093 1.331447 GGCGTTAGTGTTTCCGTTGTT 59.669 47.619 0.00 0.00 0.00 2.83
3731 5094 0.939419 GGCGTTAGTGTTTCCGTTGT 59.061 50.000 0.00 0.00 0.00 3.32
3732 5095 0.938713 TGGCGTTAGTGTTTCCGTTG 59.061 50.000 0.00 0.00 0.00 4.10
3733 5096 1.331447 GTTGGCGTTAGTGTTTCCGTT 59.669 47.619 0.00 0.00 0.00 4.44
3734 5097 0.939419 GTTGGCGTTAGTGTTTCCGT 59.061 50.000 0.00 0.00 0.00 4.69
3735 5098 0.938713 TGTTGGCGTTAGTGTTTCCG 59.061 50.000 0.00 0.00 0.00 4.30
3736 5099 1.333435 CGTGTTGGCGTTAGTGTTTCC 60.333 52.381 0.00 0.00 0.00 3.13
3737 5100 1.328374 ACGTGTTGGCGTTAGTGTTTC 59.672 47.619 0.00 0.00 43.04 2.78
3738 5101 1.062880 CACGTGTTGGCGTTAGTGTTT 59.937 47.619 7.58 0.00 43.83 2.83
3739 5102 0.653636 CACGTGTTGGCGTTAGTGTT 59.346 50.000 7.58 0.00 43.83 3.32
3740 5103 0.460635 ACACGTGTTGGCGTTAGTGT 60.461 50.000 17.22 0.00 43.83 3.55
3741 5104 0.042535 CACACGTGTTGGCGTTAGTG 60.043 55.000 20.79 0.00 43.83 2.74
3742 5105 1.155424 CCACACGTGTTGGCGTTAGT 61.155 55.000 20.79 0.00 43.83 2.24
3743 5106 1.567537 CCACACGTGTTGGCGTTAG 59.432 57.895 20.79 4.83 43.83 2.34
3744 5107 1.888172 CCCACACGTGTTGGCGTTA 60.888 57.895 24.17 0.00 43.83 3.18
3745 5108 3.206246 CCCACACGTGTTGGCGTT 61.206 61.111 24.17 0.00 43.83 4.84
3755 5118 0.599204 AGTTGAGTAACGCCCACACG 60.599 55.000 0.00 0.00 41.71 4.49
3756 5119 1.145803 GAGTTGAGTAACGCCCACAC 58.854 55.000 0.00 0.00 41.71 3.82
3757 5120 0.319211 CGAGTTGAGTAACGCCCACA 60.319 55.000 0.00 0.00 41.71 4.17
3758 5121 0.319297 ACGAGTTGAGTAACGCCCAC 60.319 55.000 0.00 0.00 41.71 4.61
3759 5122 0.038892 GACGAGTTGAGTAACGCCCA 60.039 55.000 0.00 0.00 41.71 5.36
3760 5123 0.735287 GGACGAGTTGAGTAACGCCC 60.735 60.000 0.00 0.00 41.71 6.13
3761 5124 0.038892 TGGACGAGTTGAGTAACGCC 60.039 55.000 0.00 0.00 41.71 5.68
3762 5125 1.058404 GTGGACGAGTTGAGTAACGC 58.942 55.000 0.00 0.00 41.71 4.84
3763 5126 2.049228 GTGTGGACGAGTTGAGTAACG 58.951 52.381 0.00 0.00 41.71 3.18
3776 5139 1.352156 GACGATCAAGGCGTGTGGAC 61.352 60.000 0.00 0.00 42.77 4.02
3777 5140 1.080093 GACGATCAAGGCGTGTGGA 60.080 57.895 0.00 0.00 42.77 4.02
3778 5141 2.444624 CGACGATCAAGGCGTGTGG 61.445 63.158 0.00 0.00 42.77 4.17
3779 5142 3.072598 CGACGATCAAGGCGTGTG 58.927 61.111 0.00 0.00 42.77 3.82
3784 5147 1.078759 CACTGGACGACGATCAAGGC 61.079 60.000 0.00 0.00 0.00 4.35
3785 5148 1.078759 GCACTGGACGACGATCAAGG 61.079 60.000 0.00 0.00 0.00 3.61
3786 5149 1.078759 GGCACTGGACGACGATCAAG 61.079 60.000 0.00 0.97 0.00 3.02
3787 5150 1.080093 GGCACTGGACGACGATCAA 60.080 57.895 0.00 0.00 0.00 2.57
3788 5151 1.532604 AAGGCACTGGACGACGATCA 61.533 55.000 0.00 0.00 40.86 2.92
3789 5152 0.389948 AAAGGCACTGGACGACGATC 60.390 55.000 0.00 0.00 40.86 3.69
3790 5153 0.034896 AAAAGGCACTGGACGACGAT 59.965 50.000 0.00 0.00 40.86 3.73
3791 5154 0.878523 CAAAAGGCACTGGACGACGA 60.879 55.000 0.00 0.00 40.86 4.20
3792 5155 1.569493 CAAAAGGCACTGGACGACG 59.431 57.895 0.00 0.00 40.86 5.12
3793 5156 1.282875 GCAAAAGGCACTGGACGAC 59.717 57.895 0.00 0.00 40.86 4.34
3794 5157 3.744559 GCAAAAGGCACTGGACGA 58.255 55.556 0.00 0.00 40.86 4.20
3803 5166 2.287547 TGTCAAGATTCGTGCAAAAGGC 60.288 45.455 0.00 0.00 45.13 4.35
3804 5167 3.300009 GTGTCAAGATTCGTGCAAAAGG 58.700 45.455 0.00 0.00 0.00 3.11
3805 5168 2.966708 CGTGTCAAGATTCGTGCAAAAG 59.033 45.455 0.00 0.00 0.00 2.27
3806 5169 2.609916 TCGTGTCAAGATTCGTGCAAAA 59.390 40.909 0.00 0.00 0.00 2.44
3807 5170 2.205911 TCGTGTCAAGATTCGTGCAAA 58.794 42.857 0.00 0.00 0.00 3.68
3808 5171 1.859383 TCGTGTCAAGATTCGTGCAA 58.141 45.000 0.00 0.00 0.00 4.08
3809 5172 1.859383 TTCGTGTCAAGATTCGTGCA 58.141 45.000 0.00 0.00 0.00 4.57
3810 5173 2.941891 TTTCGTGTCAAGATTCGTGC 57.058 45.000 0.00 0.00 0.00 5.34
3811 5174 3.247648 ACCTTTTCGTGTCAAGATTCGTG 59.752 43.478 0.00 0.00 0.00 4.35
3812 5175 3.463944 ACCTTTTCGTGTCAAGATTCGT 58.536 40.909 0.00 0.00 0.00 3.85
3813 5176 4.025229 TCAACCTTTTCGTGTCAAGATTCG 60.025 41.667 0.00 0.00 0.00 3.34
3814 5177 5.418310 TCAACCTTTTCGTGTCAAGATTC 57.582 39.130 0.00 0.00 0.00 2.52
3815 5178 6.391227 AATCAACCTTTTCGTGTCAAGATT 57.609 33.333 0.00 0.00 0.00 2.40
3816 5179 6.391227 AAATCAACCTTTTCGTGTCAAGAT 57.609 33.333 0.00 0.00 0.00 2.40
3817 5180 5.828299 AAATCAACCTTTTCGTGTCAAGA 57.172 34.783 0.00 0.00 0.00 3.02
3818 5181 5.804979 ACAAAATCAACCTTTTCGTGTCAAG 59.195 36.000 0.00 0.00 0.00 3.02
3819 5182 5.574830 CACAAAATCAACCTTTTCGTGTCAA 59.425 36.000 0.00 0.00 30.81 3.18
3820 5183 5.098893 CACAAAATCAACCTTTTCGTGTCA 58.901 37.500 0.00 0.00 30.81 3.58
3821 5184 5.004345 CACACAAAATCAACCTTTTCGTGTC 59.996 40.000 11.18 0.00 37.75 3.67
3822 5185 4.862018 CACACAAAATCAACCTTTTCGTGT 59.138 37.500 0.00 0.00 38.88 4.49
3823 5186 4.259770 GCACACAAAATCAACCTTTTCGTG 60.260 41.667 0.00 0.00 35.56 4.35
3824 5187 3.862845 GCACACAAAATCAACCTTTTCGT 59.137 39.130 0.00 0.00 0.00 3.85
3825 5188 3.245048 GGCACACAAAATCAACCTTTTCG 59.755 43.478 0.00 0.00 0.00 3.46
3826 5189 4.187694 TGGCACACAAAATCAACCTTTTC 58.812 39.130 0.00 0.00 0.00 2.29
3827 5190 4.213564 TGGCACACAAAATCAACCTTTT 57.786 36.364 0.00 0.00 0.00 2.27
3828 5191 3.902881 TGGCACACAAAATCAACCTTT 57.097 38.095 0.00 0.00 0.00 3.11
3842 5205 3.687102 CCCGTCCTACGTGGCACA 61.687 66.667 19.09 0.00 40.58 4.57
3843 5206 4.446413 CCCCGTCCTACGTGGCAC 62.446 72.222 7.79 7.79 40.58 5.01
3846 5209 4.143333 CAGCCCCGTCCTACGTGG 62.143 72.222 0.00 0.00 42.14 4.94
3847 5210 4.143333 CCAGCCCCGTCCTACGTG 62.143 72.222 0.00 0.00 40.58 4.49
3848 5211 4.691359 ACCAGCCCCGTCCTACGT 62.691 66.667 0.00 0.00 40.58 3.57
3849 5212 4.143333 CACCAGCCCCGTCCTACG 62.143 72.222 0.00 0.00 42.11 3.51
3850 5213 3.001406 ACACCAGCCCCGTCCTAC 61.001 66.667 0.00 0.00 0.00 3.18
3851 5214 3.000819 CACACCAGCCCCGTCCTA 61.001 66.667 0.00 0.00 0.00 2.94
3857 5220 4.974721 CACCCACACACCAGCCCC 62.975 72.222 0.00 0.00 0.00 5.80
3858 5221 3.731766 AACACCCACACACCAGCCC 62.732 63.158 0.00 0.00 0.00 5.19
3859 5222 2.123897 AACACCCACACACCAGCC 60.124 61.111 0.00 0.00 0.00 4.85
3860 5223 2.489275 CCAACACCCACACACCAGC 61.489 63.158 0.00 0.00 0.00 4.85
3861 5224 0.819259 CTCCAACACCCACACACCAG 60.819 60.000 0.00 0.00 0.00 4.00
3862 5225 1.225983 CTCCAACACCCACACACCA 59.774 57.895 0.00 0.00 0.00 4.17
3863 5226 0.535102 CTCTCCAACACCCACACACC 60.535 60.000 0.00 0.00 0.00 4.16
3864 5227 0.180406 ACTCTCCAACACCCACACAC 59.820 55.000 0.00 0.00 0.00 3.82
3865 5228 0.916086 AACTCTCCAACACCCACACA 59.084 50.000 0.00 0.00 0.00 3.72
3866 5229 1.676006 CAAACTCTCCAACACCCACAC 59.324 52.381 0.00 0.00 0.00 3.82
3867 5230 2.021723 GCAAACTCTCCAACACCCACA 61.022 52.381 0.00 0.00 0.00 4.17
3868 5231 0.668535 GCAAACTCTCCAACACCCAC 59.331 55.000 0.00 0.00 0.00 4.61
3869 5232 0.467290 GGCAAACTCTCCAACACCCA 60.467 55.000 0.00 0.00 0.00 4.51
3870 5233 1.179174 GGGCAAACTCTCCAACACCC 61.179 60.000 0.00 0.00 0.00 4.61
3871 5234 0.467290 TGGGCAAACTCTCCAACACC 60.467 55.000 0.00 0.00 0.00 4.16
3872 5235 0.668535 GTGGGCAAACTCTCCAACAC 59.331 55.000 0.00 0.00 31.73 3.32
3873 5236 0.257328 TGTGGGCAAACTCTCCAACA 59.743 50.000 0.00 0.00 31.73 3.33
3874 5237 0.668535 GTGTGGGCAAACTCTCCAAC 59.331 55.000 0.00 0.00 31.73 3.77
3875 5238 0.817634 CGTGTGGGCAAACTCTCCAA 60.818 55.000 0.00 0.00 31.73 3.53
3876 5239 1.227823 CGTGTGGGCAAACTCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
3877 5240 2.617274 GCGTGTGGGCAAACTCTCC 61.617 63.158 0.00 0.00 0.00 3.71
3878 5241 0.320421 TAGCGTGTGGGCAAACTCTC 60.320 55.000 0.00 0.00 34.64 3.20
3879 5242 0.320771 CTAGCGTGTGGGCAAACTCT 60.321 55.000 0.00 0.00 34.64 3.24
3880 5243 1.912371 GCTAGCGTGTGGGCAAACTC 61.912 60.000 0.00 0.00 34.64 3.01
3881 5244 1.966451 GCTAGCGTGTGGGCAAACT 60.966 57.895 0.00 0.00 34.64 2.66
3882 5245 1.586154 ATGCTAGCGTGTGGGCAAAC 61.586 55.000 9.11 0.00 38.21 2.93
3883 5246 1.303236 ATGCTAGCGTGTGGGCAAA 60.303 52.632 9.11 0.00 38.21 3.68
3884 5247 1.745115 GATGCTAGCGTGTGGGCAA 60.745 57.895 15.75 0.00 38.21 4.52
3885 5248 2.125147 GATGCTAGCGTGTGGGCA 60.125 61.111 15.75 0.00 39.06 5.36
3886 5249 1.524621 ATGATGCTAGCGTGTGGGC 60.525 57.895 15.75 0.00 0.00 5.36
3887 5250 1.779025 GCATGATGCTAGCGTGTGGG 61.779 60.000 15.75 2.21 40.96 4.61
3888 5251 1.645455 GCATGATGCTAGCGTGTGG 59.355 57.895 15.75 4.08 40.96 4.17
3898 5261 0.806102 CTGGCAAAGCAGCATGATGC 60.806 55.000 27.98 27.98 46.88 3.91
3899 5262 3.345737 CTGGCAAAGCAGCATGATG 57.654 52.632 6.59 6.59 39.69 3.07
3913 5276 2.117156 CCCACATAGTGCAGCTGGC 61.117 63.158 17.12 8.54 45.13 4.85
3914 5277 2.117156 GCCCACATAGTGCAGCTGG 61.117 63.158 17.12 0.00 31.63 4.85
3915 5278 2.466982 CGCCCACATAGTGCAGCTG 61.467 63.158 10.11 10.11 31.97 4.24
3916 5279 2.124983 CGCCCACATAGTGCAGCT 60.125 61.111 0.00 0.00 31.97 4.24
3917 5280 1.745115 TTCGCCCACATAGTGCAGC 60.745 57.895 0.00 0.00 31.34 5.25
3918 5281 0.391661 AGTTCGCCCACATAGTGCAG 60.392 55.000 0.00 0.00 31.34 4.41
3919 5282 0.899019 TAGTTCGCCCACATAGTGCA 59.101 50.000 0.00 0.00 31.34 4.57
3920 5283 2.018542 TTAGTTCGCCCACATAGTGC 57.981 50.000 0.00 0.00 31.34 4.40
3921 5284 4.876107 AGAAATTAGTTCGCCCACATAGTG 59.124 41.667 0.00 0.00 41.52 2.74
3922 5285 5.099042 AGAAATTAGTTCGCCCACATAGT 57.901 39.130 0.00 0.00 41.52 2.12
3923 5286 5.465724 GGTAGAAATTAGTTCGCCCACATAG 59.534 44.000 0.09 0.00 41.52 2.23
3924 5287 5.362263 GGTAGAAATTAGTTCGCCCACATA 58.638 41.667 0.09 0.00 41.52 2.29
3925 5288 4.196971 GGTAGAAATTAGTTCGCCCACAT 58.803 43.478 0.09 0.00 41.52 3.21
3926 5289 3.602483 GGTAGAAATTAGTTCGCCCACA 58.398 45.455 0.09 0.00 41.52 4.17
3927 5290 2.941064 GGGTAGAAATTAGTTCGCCCAC 59.059 50.000 17.82 3.28 46.71 4.61
3928 5291 3.271055 GGGTAGAAATTAGTTCGCCCA 57.729 47.619 17.82 0.00 46.71 5.36
3930 5293 3.373130 GTGTGGGTAGAAATTAGTTCGCC 59.627 47.826 1.77 1.77 41.52 5.54
3931 5294 3.998341 TGTGTGGGTAGAAATTAGTTCGC 59.002 43.478 0.00 0.00 41.52 4.70
3932 5295 6.370442 TGATTGTGTGGGTAGAAATTAGTTCG 59.630 38.462 0.00 0.00 41.52 3.95
3933 5296 7.626452 GCTGATTGTGTGGGTAGAAATTAGTTC 60.626 40.741 0.00 0.00 36.38 3.01
3934 5297 6.151144 GCTGATTGTGTGGGTAGAAATTAGTT 59.849 38.462 0.00 0.00 0.00 2.24
3935 5298 5.648092 GCTGATTGTGTGGGTAGAAATTAGT 59.352 40.000 0.00 0.00 0.00 2.24
3936 5299 5.066505 GGCTGATTGTGTGGGTAGAAATTAG 59.933 44.000 0.00 0.00 0.00 1.73
3937 5300 4.947388 GGCTGATTGTGTGGGTAGAAATTA 59.053 41.667 0.00 0.00 0.00 1.40
3938 5301 3.763897 GGCTGATTGTGTGGGTAGAAATT 59.236 43.478 0.00 0.00 0.00 1.82
3939 5302 3.245229 TGGCTGATTGTGTGGGTAGAAAT 60.245 43.478 0.00 0.00 0.00 2.17
3940 5303 2.107378 TGGCTGATTGTGTGGGTAGAAA 59.893 45.455 0.00 0.00 0.00 2.52
3941 5304 1.702401 TGGCTGATTGTGTGGGTAGAA 59.298 47.619 0.00 0.00 0.00 2.10
3942 5305 1.003118 GTGGCTGATTGTGTGGGTAGA 59.997 52.381 0.00 0.00 0.00 2.59
3943 5306 1.453155 GTGGCTGATTGTGTGGGTAG 58.547 55.000 0.00 0.00 0.00 3.18
3944 5307 0.037590 GGTGGCTGATTGTGTGGGTA 59.962 55.000 0.00 0.00 0.00 3.69
3945 5308 1.228552 GGTGGCTGATTGTGTGGGT 60.229 57.895 0.00 0.00 0.00 4.51
3946 5309 0.327924 TAGGTGGCTGATTGTGTGGG 59.672 55.000 0.00 0.00 0.00 4.61
3947 5310 1.003580 ACTAGGTGGCTGATTGTGTGG 59.996 52.381 0.00 0.00 0.00 4.17
3948 5311 2.479566 ACTAGGTGGCTGATTGTGTG 57.520 50.000 0.00 0.00 0.00 3.82
3949 5312 2.371841 TGAACTAGGTGGCTGATTGTGT 59.628 45.455 0.00 0.00 0.00 3.72
3950 5313 3.057969 TGAACTAGGTGGCTGATTGTG 57.942 47.619 0.00 0.00 0.00 3.33
3951 5314 3.614092 CATGAACTAGGTGGCTGATTGT 58.386 45.455 0.00 0.00 0.00 2.71
3952 5315 2.357009 GCATGAACTAGGTGGCTGATTG 59.643 50.000 0.00 0.00 0.00 2.67
3953 5316 2.648059 GCATGAACTAGGTGGCTGATT 58.352 47.619 0.00 0.00 0.00 2.57
3954 5317 1.473965 CGCATGAACTAGGTGGCTGAT 60.474 52.381 0.00 0.00 0.00 2.90
3955 5318 0.108186 CGCATGAACTAGGTGGCTGA 60.108 55.000 0.00 0.00 0.00 4.26
3956 5319 1.709147 GCGCATGAACTAGGTGGCTG 61.709 60.000 0.30 0.00 0.00 4.85
3957 5320 1.450312 GCGCATGAACTAGGTGGCT 60.450 57.895 0.30 0.00 0.00 4.75
3958 5321 1.097547 ATGCGCATGAACTAGGTGGC 61.098 55.000 24.69 0.00 0.00 5.01
3959 5322 0.659427 CATGCGCATGAACTAGGTGG 59.341 55.000 40.62 13.37 41.20 4.61
3960 5323 0.028505 GCATGCGCATGAACTAGGTG 59.971 55.000 45.47 23.81 41.20 4.00
3961 5324 1.431488 CGCATGCGCATGAACTAGGT 61.431 55.000 45.47 11.86 41.20 3.08
3962 5325 1.277739 CGCATGCGCATGAACTAGG 59.722 57.895 45.47 24.99 41.20 3.02
3963 5326 1.277739 CCGCATGCGCATGAACTAG 59.722 57.895 45.47 29.63 41.20 2.57
3964 5327 2.179547 CCCGCATGCGCATGAACTA 61.180 57.895 45.47 9.47 41.20 2.24
3965 5328 3.511595 CCCGCATGCGCATGAACT 61.512 61.111 45.47 15.20 41.20 3.01
3974 5337 1.644786 AAAGTAGTTCGCCCGCATGC 61.645 55.000 7.91 7.91 0.00 4.06
3975 5338 0.802494 AAAAGTAGTTCGCCCGCATG 59.198 50.000 0.00 0.00 0.00 4.06
3976 5339 1.084289 GAAAAGTAGTTCGCCCGCAT 58.916 50.000 0.00 0.00 0.00 4.73
3977 5340 1.286354 CGAAAAGTAGTTCGCCCGCA 61.286 55.000 0.00 0.00 43.38 5.69
3978 5341 1.418755 CGAAAAGTAGTTCGCCCGC 59.581 57.895 0.00 0.00 43.38 6.13
3984 5347 2.215196 TGTGTGGGCGAAAAGTAGTTC 58.785 47.619 0.00 0.00 0.00 3.01
3985 5348 2.335316 TGTGTGGGCGAAAAGTAGTT 57.665 45.000 0.00 0.00 0.00 2.24
3986 5349 2.335316 TTGTGTGGGCGAAAAGTAGT 57.665 45.000 0.00 0.00 0.00 2.73
3987 5350 3.066203 AGTTTTGTGTGGGCGAAAAGTAG 59.934 43.478 0.00 0.00 0.00 2.57
3988 5351 3.018149 AGTTTTGTGTGGGCGAAAAGTA 58.982 40.909 0.00 0.00 0.00 2.24
3989 5352 1.822371 AGTTTTGTGTGGGCGAAAAGT 59.178 42.857 0.00 0.00 0.00 2.66
3990 5353 2.459934 GAGTTTTGTGTGGGCGAAAAG 58.540 47.619 0.00 0.00 0.00 2.27
3991 5354 1.135333 GGAGTTTTGTGTGGGCGAAAA 59.865 47.619 0.00 0.00 0.00 2.29
3992 5355 0.741915 GGAGTTTTGTGTGGGCGAAA 59.258 50.000 0.00 0.00 0.00 3.46
3993 5356 0.106918 AGGAGTTTTGTGTGGGCGAA 60.107 50.000 0.00 0.00 0.00 4.70
3994 5357 0.759959 TAGGAGTTTTGTGTGGGCGA 59.240 50.000 0.00 0.00 0.00 5.54
3995 5358 1.535462 CTTAGGAGTTTTGTGTGGGCG 59.465 52.381 0.00 0.00 0.00 6.13
3996 5359 2.583143 ACTTAGGAGTTTTGTGTGGGC 58.417 47.619 0.00 0.00 29.87 5.36
3997 5360 3.951680 ACAACTTAGGAGTTTTGTGTGGG 59.048 43.478 0.00 0.00 43.48 4.61
3998 5361 4.202010 CCACAACTTAGGAGTTTTGTGTGG 60.202 45.833 11.53 11.53 46.46 4.17
3999 5362 4.920376 CCACAACTTAGGAGTTTTGTGTG 58.080 43.478 11.26 6.45 43.48 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.