Multiple sequence alignment - TraesCS3B01G203100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G203100 | chr3B | 100.000 | 3077 | 0 | 0 | 1 | 3077 | 237330856 | 237333932 | 0.000000e+00 | 5683 |
1 | TraesCS3B01G203100 | chr3D | 90.709 | 2185 | 153 | 21 | 77 | 2223 | 160697267 | 160699439 | 0.000000e+00 | 2865 |
2 | TraesCS3B01G203100 | chr3D | 88.934 | 244 | 20 | 6 | 2833 | 3073 | 160700048 | 160700287 | 8.340000e-76 | 294 |
3 | TraesCS3B01G203100 | chr3D | 85.091 | 275 | 23 | 9 | 2430 | 2703 | 160699786 | 160700043 | 6.540000e-67 | 265 |
4 | TraesCS3B01G203100 | chr3A | 93.047 | 1697 | 84 | 13 | 687 | 2363 | 187247306 | 187248988 | 0.000000e+00 | 2449 |
5 | TraesCS3B01G203100 | chr3A | 85.542 | 332 | 20 | 16 | 2363 | 2686 | 187249044 | 187249355 | 3.830000e-84 | 322 |
6 | TraesCS3B01G203100 | chr3A | 88.710 | 248 | 20 | 7 | 2833 | 3077 | 187249364 | 187249606 | 2.320000e-76 | 296 |
7 | TraesCS3B01G203100 | chrUn | 93.617 | 141 | 8 | 1 | 2689 | 2829 | 319650494 | 319650355 | 3.110000e-50 | 209 |
8 | TraesCS3B01G203100 | chr6B | 96.094 | 128 | 5 | 0 | 2702 | 2829 | 220575563 | 220575436 | 3.110000e-50 | 209 |
9 | TraesCS3B01G203100 | chr6B | 95.385 | 130 | 6 | 0 | 2700 | 2829 | 39206388 | 39206517 | 1.120000e-49 | 207 |
10 | TraesCS3B01G203100 | chr5D | 94.203 | 138 | 7 | 1 | 2692 | 2829 | 392813716 | 392813852 | 3.110000e-50 | 209 |
11 | TraesCS3B01G203100 | chr4D | 95.385 | 130 | 6 | 0 | 2701 | 2830 | 439129929 | 439129800 | 1.120000e-49 | 207 |
12 | TraesCS3B01G203100 | chr2B | 93.007 | 143 | 8 | 2 | 2694 | 2834 | 536806172 | 536806030 | 1.120000e-49 | 207 |
13 | TraesCS3B01G203100 | chr6A | 94.697 | 132 | 7 | 0 | 2702 | 2833 | 87926630 | 87926499 | 4.020000e-49 | 206 |
14 | TraesCS3B01G203100 | chr5A | 94.074 | 135 | 7 | 1 | 2702 | 2836 | 243810111 | 243809978 | 1.450000e-48 | 204 |
15 | TraesCS3B01G203100 | chr4B | 94.656 | 131 | 7 | 0 | 2700 | 2830 | 180671160 | 180671290 | 1.450000e-48 | 204 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G203100 | chr3B | 237330856 | 237333932 | 3076 | False | 5683.000000 | 5683 | 100.000000 | 1 | 3077 | 1 | chr3B.!!$F1 | 3076 |
1 | TraesCS3B01G203100 | chr3D | 160697267 | 160700287 | 3020 | False | 1141.333333 | 2865 | 88.244667 | 77 | 3073 | 3 | chr3D.!!$F1 | 2996 |
2 | TraesCS3B01G203100 | chr3A | 187247306 | 187249606 | 2300 | False | 1022.333333 | 2449 | 89.099667 | 687 | 3077 | 3 | chr3A.!!$F1 | 2390 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
750 | 762 | 0.0293 | TCTTGTTGCAAAGCACTCGC | 59.971 | 50.0 | 0.0 | 0.0 | 38.71 | 5.03 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2698 | 2960 | 0.613853 | TGGGACGGAGGGAGTACAAG | 60.614 | 60.0 | 0.0 | 0.0 | 0.0 | 3.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.723348 | GTCCGCCGCACCTGAAAC | 61.723 | 66.667 | 0.00 | 0.00 | 0.00 | 2.78 |
26 | 27 | 4.025401 | CGCACCTGAAACGCCCAC | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
39 | 40 | 2.751436 | CCCACGTGGCCATGGAAG | 60.751 | 66.667 | 29.75 | 16.98 | 38.34 | 3.46 |
40 | 41 | 2.751436 | CCACGTGGCCATGGAAGG | 60.751 | 66.667 | 28.37 | 21.57 | 38.34 | 3.46 |
61 | 62 | 2.128035 | CGGAGCAGATTACTAAAGGCG | 58.872 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
62 | 63 | 2.481449 | CGGAGCAGATTACTAAAGGCGT | 60.481 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
63 | 64 | 3.124560 | GGAGCAGATTACTAAAGGCGTC | 58.875 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
64 | 65 | 2.789893 | GAGCAGATTACTAAAGGCGTCG | 59.210 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
65 | 66 | 2.426024 | AGCAGATTACTAAAGGCGTCGA | 59.574 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
66 | 67 | 3.068307 | AGCAGATTACTAAAGGCGTCGAT | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
67 | 68 | 4.277672 | AGCAGATTACTAAAGGCGTCGATA | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
68 | 69 | 4.980434 | GCAGATTACTAAAGGCGTCGATAA | 59.020 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
69 | 70 | 5.461078 | GCAGATTACTAAAGGCGTCGATAAA | 59.539 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
70 | 71 | 6.345882 | GCAGATTACTAAAGGCGTCGATAAAG | 60.346 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
71 | 72 | 6.144080 | CAGATTACTAAAGGCGTCGATAAAGG | 59.856 | 42.308 | 0.00 | 0.00 | 0.00 | 3.11 |
72 | 73 | 3.175109 | ACTAAAGGCGTCGATAAAGGG | 57.825 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
73 | 74 | 2.159000 | ACTAAAGGCGTCGATAAAGGGG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
74 | 75 | 0.746923 | AAAGGCGTCGATAAAGGGGC | 60.747 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
75 | 76 | 1.623542 | AAGGCGTCGATAAAGGGGCT | 61.624 | 55.000 | 0.00 | 0.00 | 34.74 | 5.19 |
81 | 82 | 3.576648 | CGTCGATAAAGGGGCTCTAATC | 58.423 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
87 | 88 | 2.877154 | AAGGGGCTCTAATCTCCTCA | 57.123 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
107 | 108 | 2.037367 | TCGGGTGTGGAGGGAGAG | 59.963 | 66.667 | 0.00 | 0.00 | 0.00 | 3.20 |
111 | 112 | 2.689034 | GTGTGGAGGGAGAGGGGG | 60.689 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
112 | 113 | 3.208592 | TGTGGAGGGAGAGGGGGT | 61.209 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
118 | 119 | 0.326618 | GAGGGAGAGGGGGTGATTCA | 60.327 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
129 | 130 | 3.711704 | GGGGGTGATTCATGACTTCTCTA | 59.288 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
134 | 135 | 6.881602 | GGGTGATTCATGACTTCTCTAGTTTT | 59.118 | 38.462 | 0.00 | 0.00 | 37.17 | 2.43 |
149 | 150 | 7.831753 | TCTCTAGTTTTATGTGAGAGTTCCAG | 58.168 | 38.462 | 0.00 | 0.00 | 36.01 | 3.86 |
184 | 185 | 6.899393 | AAGATTAACAAGGCTGAATGAACA | 57.101 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
198 | 199 | 7.912250 | GGCTGAATGAACAAAATACACAGATAG | 59.088 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
199 | 200 | 7.430502 | GCTGAATGAACAAAATACACAGATAGC | 59.569 | 37.037 | 0.00 | 0.00 | 0.00 | 2.97 |
201 | 202 | 8.668353 | TGAATGAACAAAATACACAGATAGCTC | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
208 | 209 | 2.638556 | ACACAGATAGCTCACGACAC | 57.361 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
212 | 213 | 0.393944 | AGATAGCTCACGACACCCGA | 60.394 | 55.000 | 0.00 | 0.00 | 41.76 | 5.14 |
217 | 218 | 0.384309 | GCTCACGACACCCGATGATA | 59.616 | 55.000 | 0.00 | 0.00 | 41.76 | 2.15 |
254 | 255 | 0.322975 | CTCCTCAAGGTCAGGTGTGG | 59.677 | 60.000 | 0.00 | 0.00 | 36.34 | 4.17 |
262 | 263 | 1.545706 | GGTCAGGTGTGGAGGGAGAC | 61.546 | 65.000 | 0.00 | 0.00 | 0.00 | 3.36 |
275 | 276 | 0.392595 | GGGAGACGGGGACAATTCAC | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
276 | 277 | 0.323629 | GGAGACGGGGACAATTCACA | 59.676 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
285 | 286 | 3.753797 | GGGGACAATTCACAACTTCTCTC | 59.246 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
286 | 287 | 4.505742 | GGGGACAATTCACAACTTCTCTCT | 60.506 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
287 | 288 | 4.453819 | GGGACAATTCACAACTTCTCTCTG | 59.546 | 45.833 | 0.00 | 0.00 | 0.00 | 3.35 |
295 | 296 | 5.047847 | TCACAACTTCTCTCTGGTTTTACG | 58.952 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
340 | 342 | 9.922305 | GATTAAGATTAACGAGGTTGAATGAAG | 57.078 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
355 | 357 | 8.641499 | GTTGAATGAAGTAATCAACTAACACG | 57.359 | 34.615 | 9.86 | 0.00 | 45.86 | 4.49 |
356 | 358 | 7.359262 | TGAATGAAGTAATCAACTAACACGG | 57.641 | 36.000 | 0.00 | 0.00 | 42.54 | 4.94 |
369 | 371 | 7.444299 | TCAACTAACACGGTACCTAGAAATTT | 58.556 | 34.615 | 10.90 | 0.00 | 0.00 | 1.82 |
370 | 372 | 7.385752 | TCAACTAACACGGTACCTAGAAATTTG | 59.614 | 37.037 | 10.90 | 6.33 | 0.00 | 2.32 |
395 | 397 | 8.366401 | TGTAATCCAATAAATTATGCATGGTGG | 58.634 | 33.333 | 10.16 | 6.15 | 0.00 | 4.61 |
401 | 403 | 9.947433 | CCAATAAATTATGCATGGTGGATTTAT | 57.053 | 29.630 | 10.16 | 13.08 | 33.48 | 1.40 |
421 | 423 | 6.886178 | TTATTCTAGGGTTGCTAAGAGGTT | 57.114 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
425 | 427 | 5.525484 | TCTAGGGTTGCTAAGAGGTTCATA | 58.475 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
426 | 428 | 6.143915 | TCTAGGGTTGCTAAGAGGTTCATAT | 58.856 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
430 | 432 | 5.059833 | GGTTGCTAAGAGGTTCATATCCAG | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
443 | 445 | 3.649502 | TCATATCCAGATGCATGGTCAGT | 59.350 | 43.478 | 2.46 | 0.00 | 41.43 | 3.41 |
458 | 460 | 1.001764 | CAGTGAGGCCATGCAAGGA | 60.002 | 57.895 | 13.26 | 0.00 | 0.00 | 3.36 |
474 | 480 | 2.584608 | GATGGTGGGTGGAGGACG | 59.415 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
477 | 483 | 2.920912 | GGTGGGTGGAGGACGTCA | 60.921 | 66.667 | 18.91 | 0.00 | 0.00 | 4.35 |
487 | 493 | 1.305297 | AGGACGTCAGCCTGGATCA | 60.305 | 57.895 | 18.91 | 0.00 | 33.59 | 2.92 |
492 | 498 | 1.142748 | GTCAGCCTGGATCACTCGG | 59.857 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
493 | 499 | 2.202987 | CAGCCTGGATCACTCGGC | 60.203 | 66.667 | 0.00 | 0.17 | 42.79 | 5.54 |
497 | 503 | 2.579201 | CTGGATCACTCGGCGGTT | 59.421 | 61.111 | 7.21 | 0.00 | 0.00 | 4.44 |
504 | 510 | 0.672401 | TCACTCGGCGGTTGAATTCC | 60.672 | 55.000 | 7.21 | 0.00 | 0.00 | 3.01 |
505 | 511 | 1.376812 | ACTCGGCGGTTGAATTCCC | 60.377 | 57.895 | 7.21 | 0.00 | 0.00 | 3.97 |
507 | 513 | 2.360600 | CGGCGGTTGAATTCCCCA | 60.361 | 61.111 | 2.27 | 0.00 | 0.00 | 4.96 |
526 | 532 | 1.550130 | AAATTCCTCACCCTCCGCGA | 61.550 | 55.000 | 8.23 | 0.00 | 0.00 | 5.87 |
527 | 533 | 2.240162 | AATTCCTCACCCTCCGCGAC | 62.240 | 60.000 | 8.23 | 0.00 | 0.00 | 5.19 |
532 | 538 | 4.530857 | CACCCTCCGCGACCATCC | 62.531 | 72.222 | 8.23 | 0.00 | 0.00 | 3.51 |
533 | 539 | 4.779733 | ACCCTCCGCGACCATCCT | 62.780 | 66.667 | 8.23 | 0.00 | 0.00 | 3.24 |
535 | 541 | 2.202932 | CCTCCGCGACCATCCTTG | 60.203 | 66.667 | 8.23 | 0.00 | 0.00 | 3.61 |
575 | 581 | 1.381928 | GGGTGGTAGCGACTCGATCA | 61.382 | 60.000 | 1.63 | 0.00 | 0.00 | 2.92 |
596 | 602 | 2.758130 | TGTGGTCATGGGATAGCACTA | 58.242 | 47.619 | 13.54 | 1.20 | 42.96 | 2.74 |
615 | 621 | 5.631026 | CACTAGTGCGTATTTTTCATGCTT | 58.369 | 37.500 | 10.54 | 0.00 | 0.00 | 3.91 |
650 | 662 | 3.374042 | TTTTTGTGAGGTGGGAGTCAA | 57.626 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
655 | 667 | 1.555075 | GTGAGGTGGGAGTCAATGCTA | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 3.49 |
662 | 674 | 1.065126 | GGGAGTCAATGCTAAGTGGCT | 60.065 | 52.381 | 0.00 | 0.00 | 39.46 | 4.75 |
666 | 678 | 1.541147 | GTCAATGCTAAGTGGCTTGCA | 59.459 | 47.619 | 0.00 | 0.00 | 34.25 | 4.08 |
677 | 689 | 2.901839 | AGTGGCTTGCAGATTTGGAATT | 59.098 | 40.909 | 0.00 | 0.00 | 33.95 | 2.17 |
711 | 723 | 6.649973 | CACCCACATATTGATTCTTTGCAAAA | 59.350 | 34.615 | 13.84 | 0.00 | 0.00 | 2.44 |
717 | 729 | 3.641437 | TGATTCTTTGCAAAACTCCCG | 57.359 | 42.857 | 13.84 | 0.21 | 0.00 | 5.14 |
750 | 762 | 0.029300 | TCTTGTTGCAAAGCACTCGC | 59.971 | 50.000 | 0.00 | 0.00 | 38.71 | 5.03 |
751 | 763 | 1.264141 | CTTGTTGCAAAGCACTCGCG | 61.264 | 55.000 | 0.00 | 0.00 | 45.49 | 5.87 |
767 | 779 | 0.238289 | CGCGGTGCAAATCTTTGAGT | 59.762 | 50.000 | 0.00 | 0.00 | 40.55 | 3.41 |
780 | 792 | 2.802247 | TCTTTGAGTGCAACATGACTCG | 59.198 | 45.455 | 0.00 | 0.00 | 41.37 | 4.18 |
785 | 797 | 3.056891 | TGAGTGCAACATGACTCGTGATA | 60.057 | 43.478 | 0.00 | 0.00 | 41.37 | 2.15 |
807 | 820 | 4.947645 | ACAAATCTCCAAACACAACATGG | 58.052 | 39.130 | 0.00 | 0.00 | 35.49 | 3.66 |
809 | 822 | 2.064434 | TCTCCAAACACAACATGGCA | 57.936 | 45.000 | 0.00 | 0.00 | 34.13 | 4.92 |
826 | 839 | 3.753519 | ATGGCACATGTTGTAAACCTCCA | 60.754 | 43.478 | 0.00 | 0.00 | 44.91 | 3.86 |
833 | 846 | 3.349488 | GTTGTAAACCTCCAAGCACAC | 57.651 | 47.619 | 0.00 | 0.00 | 42.21 | 3.82 |
858 | 871 | 1.299541 | CCCATGTTGCATACCTCGTC | 58.700 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
859 | 872 | 0.930310 | CCATGTTGCATACCTCGTCG | 59.070 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
864 | 877 | 1.600511 | TTGCATACCTCGTCGGCTGA | 61.601 | 55.000 | 0.00 | 0.00 | 35.61 | 4.26 |
919 | 933 | 3.157087 | ACCTTCAAGCCTAACATGGTTG | 58.843 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
938 | 952 | 1.134189 | TGCAAGCCTCATCAGGATCTG | 60.134 | 52.381 | 0.00 | 0.00 | 43.65 | 2.90 |
963 | 977 | 1.437986 | GATCCAACGGCTAGCGACT | 59.562 | 57.895 | 9.00 | 0.00 | 0.00 | 4.18 |
1051 | 1070 | 2.025418 | CCACGAAGCCACGTACCAC | 61.025 | 63.158 | 5.52 | 0.00 | 44.76 | 4.16 |
1059 | 1078 | 3.455195 | CACGTACCACGACACGCG | 61.455 | 66.667 | 3.53 | 3.53 | 46.05 | 6.01 |
1101 | 1128 | 4.554036 | GCTGCCCCTCCACGATCC | 62.554 | 72.222 | 0.00 | 0.00 | 0.00 | 3.36 |
1118 | 1145 | 4.400251 | CCTCCTCCCCCGTCAGGT | 62.400 | 72.222 | 0.00 | 0.00 | 35.12 | 4.00 |
1119 | 1146 | 2.760385 | CTCCTCCCCCGTCAGGTC | 60.760 | 72.222 | 0.00 | 0.00 | 35.12 | 3.85 |
1120 | 1147 | 3.273654 | TCCTCCCCCGTCAGGTCT | 61.274 | 66.667 | 0.00 | 0.00 | 35.12 | 3.85 |
1169 | 1196 | 0.878523 | CACAAAACCTCAGACGGCGA | 60.879 | 55.000 | 16.62 | 0.00 | 0.00 | 5.54 |
1175 | 1202 | 2.259818 | CTCAGACGGCGAACTGCT | 59.740 | 61.111 | 24.52 | 8.85 | 45.43 | 4.24 |
1264 | 1291 | 1.901948 | CGCTACCTATGCTCCGGGA | 60.902 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
1698 | 1737 | 2.792290 | CTTGGCATCAGCGTCGTCG | 61.792 | 63.158 | 0.00 | 0.00 | 43.41 | 5.12 |
1701 | 1740 | 2.504026 | GCATCAGCGTCGTCGTCA | 60.504 | 61.111 | 3.66 | 0.00 | 39.49 | 4.35 |
1882 | 1921 | 0.608582 | CAAGAAAGCTCTGCCCTGCT | 60.609 | 55.000 | 0.00 | 0.00 | 41.82 | 4.24 |
1924 | 1963 | 0.666577 | GTCAGTTTCGTCGGTCAGGG | 60.667 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1925 | 1964 | 2.027625 | CAGTTTCGTCGGTCAGGGC | 61.028 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
1926 | 1965 | 2.741211 | GTTTCGTCGGTCAGGGCC | 60.741 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
1986 | 2025 | 2.356313 | CGCACAACGTCTCTGCCT | 60.356 | 61.111 | 6.50 | 0.00 | 36.87 | 4.75 |
2020 | 2059 | 1.078143 | GTTCTTGGATGCCTCGGCT | 60.078 | 57.895 | 9.65 | 0.00 | 42.51 | 5.52 |
2225 | 2264 | 0.036732 | TCAGCCGGCTCAATCTTTGT | 59.963 | 50.000 | 30.29 | 0.00 | 0.00 | 2.83 |
2232 | 2271 | 3.181497 | CCGGCTCAATCTTTGTTATGTGG | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
2240 | 2279 | 6.214615 | TCAATCTTTGTTATGTGGGAGTCCTA | 59.785 | 38.462 | 9.58 | 0.00 | 0.00 | 2.94 |
2241 | 2280 | 6.831664 | ATCTTTGTTATGTGGGAGTCCTAT | 57.168 | 37.500 | 9.58 | 4.39 | 0.00 | 2.57 |
2242 | 2281 | 6.636454 | TCTTTGTTATGTGGGAGTCCTATT | 57.364 | 37.500 | 9.58 | 0.00 | 0.00 | 1.73 |
2243 | 2282 | 7.027874 | TCTTTGTTATGTGGGAGTCCTATTT | 57.972 | 36.000 | 9.58 | 0.00 | 0.00 | 1.40 |
2244 | 2283 | 7.466804 | TCTTTGTTATGTGGGAGTCCTATTTT | 58.533 | 34.615 | 9.58 | 0.00 | 0.00 | 1.82 |
2245 | 2284 | 8.607713 | TCTTTGTTATGTGGGAGTCCTATTTTA | 58.392 | 33.333 | 9.58 | 0.00 | 0.00 | 1.52 |
2246 | 2285 | 8.801882 | TTTGTTATGTGGGAGTCCTATTTTAG | 57.198 | 34.615 | 9.58 | 0.00 | 0.00 | 1.85 |
2296 | 2335 | 9.793259 | TTACCCATATCAATTCCTTACTTCATC | 57.207 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
2297 | 2336 | 7.815383 | ACCCATATCAATTCCTTACTTCATCA | 58.185 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
2298 | 2337 | 8.451245 | ACCCATATCAATTCCTTACTTCATCAT | 58.549 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
2332 | 2371 | 8.992073 | GGAATAAACATCTTTGTGCTGAATTTT | 58.008 | 29.630 | 0.00 | 0.00 | 35.83 | 1.82 |
2333 | 2372 | 9.801714 | GAATAAACATCTTTGTGCTGAATTTTG | 57.198 | 29.630 | 0.00 | 0.00 | 35.83 | 2.44 |
2341 | 2380 | 5.534207 | TTGTGCTGAATTTTGTTCTCCAT | 57.466 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
2343 | 2382 | 5.291178 | TGTGCTGAATTTTGTTCTCCATTG | 58.709 | 37.500 | 0.00 | 0.00 | 0.00 | 2.82 |
2347 | 2386 | 5.984926 | GCTGAATTTTGTTCTCCATTGTTCA | 59.015 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2363 | 2402 | 6.142161 | CCATTGTTCATTGTGTTTCGTGTTAG | 59.858 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
2365 | 2404 | 6.905544 | TGTTCATTGTGTTTCGTGTTAGTA | 57.094 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2366 | 2405 | 6.707711 | TGTTCATTGTGTTTCGTGTTAGTAC | 58.292 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2367 | 2406 | 6.313164 | TGTTCATTGTGTTTCGTGTTAGTACA | 59.687 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2464 | 2723 | 6.482973 | CCTGCAAACAAAACAATTACTGGATT | 59.517 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2488 | 2747 | 6.564709 | AATATTGCAATCTCATGTATGCGT | 57.435 | 33.333 | 16.86 | 0.00 | 41.61 | 5.24 |
2489 | 2748 | 4.906065 | ATTGCAATCTCATGTATGCGTT | 57.094 | 36.364 | 5.99 | 0.00 | 41.61 | 4.84 |
2490 | 2749 | 4.700268 | TTGCAATCTCATGTATGCGTTT | 57.300 | 36.364 | 0.00 | 0.00 | 41.61 | 3.60 |
2527 | 2786 | 8.874744 | TTACTGGAGTACTACAAGTCTAATGT | 57.125 | 34.615 | 9.61 | 3.52 | 34.81 | 2.71 |
2595 | 2854 | 6.423862 | TCGATCAAAACCTTGTTTTAACGAG | 58.576 | 36.000 | 16.00 | 3.33 | 39.63 | 4.18 |
2596 | 2855 | 6.258287 | TCGATCAAAACCTTGTTTTAACGAGA | 59.742 | 34.615 | 10.75 | 7.36 | 41.97 | 4.04 |
2597 | 2856 | 6.573725 | CGATCAAAACCTTGTTTTAACGAGAG | 59.426 | 38.462 | 10.75 | 4.71 | 41.97 | 3.20 |
2598 | 2857 | 6.988622 | TCAAAACCTTGTTTTAACGAGAGA | 57.011 | 33.333 | 10.75 | 0.00 | 41.97 | 3.10 |
2599 | 2858 | 7.380431 | TCAAAACCTTGTTTTAACGAGAGAA | 57.620 | 32.000 | 10.75 | 0.00 | 41.97 | 2.87 |
2690 | 2952 | 8.494433 | AGAAGGGAGTTACATATCTAAAATGCA | 58.506 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
2698 | 2960 | 9.931210 | GTTACATATCTAAAATGCACCTTACAC | 57.069 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2703 | 2965 | 9.899661 | ATATCTAAAATGCACCTTACACTTGTA | 57.100 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2704 | 2966 | 7.429636 | TCTAAAATGCACCTTACACTTGTAC | 57.570 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2705 | 2967 | 7.221450 | TCTAAAATGCACCTTACACTTGTACT | 58.779 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
2707 | 2969 | 3.396260 | TGCACCTTACACTTGTACTCC | 57.604 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2708 | 2970 | 2.038033 | TGCACCTTACACTTGTACTCCC | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2709 | 2971 | 2.302157 | GCACCTTACACTTGTACTCCCT | 59.698 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2710 | 2972 | 3.616802 | GCACCTTACACTTGTACTCCCTC | 60.617 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2711 | 2973 | 3.056035 | CACCTTACACTTGTACTCCCTCC | 60.056 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2712 | 2974 | 2.165845 | CCTTACACTTGTACTCCCTCCG | 59.834 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
2713 | 2975 | 2.592102 | TACACTTGTACTCCCTCCGT | 57.408 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2714 | 2976 | 1.254954 | ACACTTGTACTCCCTCCGTC | 58.745 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2715 | 2977 | 0.531200 | CACTTGTACTCCCTCCGTCC | 59.469 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2716 | 2978 | 0.614134 | ACTTGTACTCCCTCCGTCCC | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2717 | 2979 | 0.613853 | CTTGTACTCCCTCCGTCCCA | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2718 | 2980 | 0.178926 | TTGTACTCCCTCCGTCCCAA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2719 | 2981 | 0.178926 | TGTACTCCCTCCGTCCCAAA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2720 | 2982 | 0.978907 | GTACTCCCTCCGTCCCAAAA | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2721 | 2983 | 1.558294 | GTACTCCCTCCGTCCCAAAAT | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
2722 | 2984 | 1.073098 | ACTCCCTCCGTCCCAAAATT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2723 | 2985 | 1.004394 | ACTCCCTCCGTCCCAAAATTC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2724 | 2986 | 1.282157 | CTCCCTCCGTCCCAAAATTCT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
2725 | 2987 | 1.708551 | TCCCTCCGTCCCAAAATTCTT | 59.291 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
2726 | 2988 | 1.818674 | CCCTCCGTCCCAAAATTCTTG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
2727 | 2989 | 2.514803 | CCTCCGTCCCAAAATTCTTGT | 58.485 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2728 | 2990 | 2.488153 | CCTCCGTCCCAAAATTCTTGTC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2729 | 2991 | 3.412386 | CTCCGTCCCAAAATTCTTGTCT | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2730 | 2992 | 3.821033 | CTCCGTCCCAAAATTCTTGTCTT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2731 | 2993 | 4.975631 | TCCGTCCCAAAATTCTTGTCTTA | 58.024 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2732 | 2994 | 4.758165 | TCCGTCCCAAAATTCTTGTCTTAC | 59.242 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
2733 | 2995 | 4.517453 | CCGTCCCAAAATTCTTGTCTTACA | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
2734 | 2996 | 5.183140 | CCGTCCCAAAATTCTTGTCTTACAT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2735 | 2997 | 6.294508 | CCGTCCCAAAATTCTTGTCTTACATT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
2736 | 2998 | 7.145323 | CGTCCCAAAATTCTTGTCTTACATTT | 58.855 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2737 | 2999 | 8.293867 | CGTCCCAAAATTCTTGTCTTACATTTA | 58.706 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2756 | 3018 | 8.880991 | ACATTTATCTAGATACGGATGTACCT | 57.119 | 34.615 | 22.14 | 8.27 | 36.31 | 3.08 |
2757 | 3019 | 9.970553 | ACATTTATCTAGATACGGATGTACCTA | 57.029 | 33.333 | 22.14 | 2.50 | 36.31 | 3.08 |
2770 | 3032 | 8.882415 | ACGGATGTACCTAATACTAAAATGTG | 57.118 | 34.615 | 0.00 | 0.00 | 34.56 | 3.21 |
2771 | 3033 | 8.698210 | ACGGATGTACCTAATACTAAAATGTGA | 58.302 | 33.333 | 0.00 | 0.00 | 34.56 | 3.58 |
2772 | 3034 | 8.975439 | CGGATGTACCTAATACTAAAATGTGAC | 58.025 | 37.037 | 0.00 | 0.00 | 34.56 | 3.67 |
2779 | 3041 | 8.893727 | ACCTAATACTAAAATGTGACTTGATGC | 58.106 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2780 | 3042 | 8.892723 | CCTAATACTAAAATGTGACTTGATGCA | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
2783 | 3045 | 6.199937 | ACTAAAATGTGACTTGATGCATCC | 57.800 | 37.500 | 23.67 | 8.87 | 0.00 | 3.51 |
2784 | 3046 | 3.770263 | AAATGTGACTTGATGCATCCG | 57.230 | 42.857 | 23.67 | 16.46 | 0.00 | 4.18 |
2785 | 3047 | 2.408271 | ATGTGACTTGATGCATCCGT | 57.592 | 45.000 | 23.67 | 19.44 | 0.00 | 4.69 |
2786 | 3048 | 3.541996 | ATGTGACTTGATGCATCCGTA | 57.458 | 42.857 | 23.67 | 8.47 | 0.00 | 4.02 |
2787 | 3049 | 3.541996 | TGTGACTTGATGCATCCGTAT | 57.458 | 42.857 | 23.67 | 6.88 | 0.00 | 3.06 |
2788 | 3050 | 3.872696 | TGTGACTTGATGCATCCGTATT | 58.127 | 40.909 | 23.67 | 3.78 | 0.00 | 1.89 |
2789 | 3051 | 4.260985 | TGTGACTTGATGCATCCGTATTT | 58.739 | 39.130 | 23.67 | 2.33 | 0.00 | 1.40 |
2790 | 3052 | 4.094739 | TGTGACTTGATGCATCCGTATTTG | 59.905 | 41.667 | 23.67 | 8.30 | 0.00 | 2.32 |
2791 | 3053 | 3.627123 | TGACTTGATGCATCCGTATTTGG | 59.373 | 43.478 | 23.67 | 7.34 | 0.00 | 3.28 |
2792 | 3054 | 3.876914 | GACTTGATGCATCCGTATTTGGA | 59.123 | 43.478 | 23.67 | 0.00 | 43.58 | 3.53 |
2793 | 3055 | 3.627577 | ACTTGATGCATCCGTATTTGGAC | 59.372 | 43.478 | 23.67 | 0.00 | 41.85 | 4.02 |
2794 | 3056 | 3.274095 | TGATGCATCCGTATTTGGACA | 57.726 | 42.857 | 23.67 | 0.00 | 41.85 | 4.02 |
2795 | 3057 | 3.615155 | TGATGCATCCGTATTTGGACAA | 58.385 | 40.909 | 23.67 | 0.00 | 41.85 | 3.18 |
2796 | 3058 | 4.013050 | TGATGCATCCGTATTTGGACAAA | 58.987 | 39.130 | 23.67 | 0.00 | 41.85 | 2.83 |
2797 | 3059 | 4.644234 | TGATGCATCCGTATTTGGACAAAT | 59.356 | 37.500 | 23.67 | 14.02 | 41.85 | 2.32 |
2798 | 3060 | 4.630894 | TGCATCCGTATTTGGACAAATC | 57.369 | 40.909 | 13.07 | 5.63 | 41.85 | 2.17 |
2799 | 3061 | 4.269183 | TGCATCCGTATTTGGACAAATCT | 58.731 | 39.130 | 13.07 | 0.00 | 41.85 | 2.40 |
2800 | 3062 | 5.432645 | TGCATCCGTATTTGGACAAATCTA | 58.567 | 37.500 | 13.07 | 0.00 | 41.85 | 1.98 |
2801 | 3063 | 5.883115 | TGCATCCGTATTTGGACAAATCTAA | 59.117 | 36.000 | 13.07 | 0.00 | 41.85 | 2.10 |
2802 | 3064 | 6.038161 | TGCATCCGTATTTGGACAAATCTAAG | 59.962 | 38.462 | 13.07 | 1.07 | 41.85 | 2.18 |
2803 | 3065 | 6.260050 | GCATCCGTATTTGGACAAATCTAAGA | 59.740 | 38.462 | 13.07 | 7.57 | 41.85 | 2.10 |
2804 | 3066 | 7.630924 | CATCCGTATTTGGACAAATCTAAGAC | 58.369 | 38.462 | 13.07 | 5.74 | 41.85 | 3.01 |
2805 | 3067 | 6.703319 | TCCGTATTTGGACAAATCTAAGACA | 58.297 | 36.000 | 13.07 | 0.00 | 40.99 | 3.41 |
2806 | 3068 | 7.162761 | TCCGTATTTGGACAAATCTAAGACAA | 58.837 | 34.615 | 13.07 | 0.00 | 40.99 | 3.18 |
2807 | 3069 | 7.333423 | TCCGTATTTGGACAAATCTAAGACAAG | 59.667 | 37.037 | 13.07 | 2.30 | 40.99 | 3.16 |
2808 | 3070 | 7.333423 | CCGTATTTGGACAAATCTAAGACAAGA | 59.667 | 37.037 | 13.07 | 0.00 | 40.99 | 3.02 |
2809 | 3071 | 8.717821 | CGTATTTGGACAAATCTAAGACAAGAA | 58.282 | 33.333 | 13.07 | 0.00 | 40.99 | 2.52 |
2819 | 3081 | 9.760660 | CAAATCTAAGACAAGAATTTTAGGACG | 57.239 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
2820 | 3082 | 8.494016 | AATCTAAGACAAGAATTTTAGGACGG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
2821 | 3083 | 7.235935 | TCTAAGACAAGAATTTTAGGACGGA | 57.764 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2822 | 3084 | 7.321153 | TCTAAGACAAGAATTTTAGGACGGAG | 58.679 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2823 | 3085 | 4.833390 | AGACAAGAATTTTAGGACGGAGG | 58.167 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2824 | 3086 | 4.530946 | AGACAAGAATTTTAGGACGGAGGA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
2825 | 3087 | 5.012768 | AGACAAGAATTTTAGGACGGAGGAA | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2826 | 3088 | 5.246307 | ACAAGAATTTTAGGACGGAGGAAG | 58.754 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
2827 | 3089 | 5.221864 | ACAAGAATTTTAGGACGGAGGAAGT | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2828 | 3090 | 6.013984 | ACAAGAATTTTAGGACGGAGGAAGTA | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2829 | 3091 | 6.809976 | AGAATTTTAGGACGGAGGAAGTAT | 57.190 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
2830 | 3092 | 7.196637 | AGAATTTTAGGACGGAGGAAGTATT | 57.803 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2831 | 3093 | 8.315220 | AGAATTTTAGGACGGAGGAAGTATTA | 57.685 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2865 | 3127 | 0.756294 | AGTCCGAATGTCACACACCA | 59.244 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2880 | 3142 | 4.758674 | CACACACCAATCAAGAGAAGTGAT | 59.241 | 41.667 | 0.00 | 0.00 | 37.31 | 3.06 |
2881 | 3143 | 4.758674 | ACACACCAATCAAGAGAAGTGATG | 59.241 | 41.667 | 0.00 | 0.00 | 35.87 | 3.07 |
2884 | 3146 | 4.094590 | CACCAATCAAGAGAAGTGATGAGC | 59.905 | 45.833 | 0.00 | 0.00 | 35.87 | 4.26 |
2899 | 3161 | 5.101628 | GTGATGAGCGGCATAATTCAAAAA | 58.898 | 37.500 | 1.45 | 0.00 | 37.34 | 1.94 |
2900 | 3162 | 5.750067 | GTGATGAGCGGCATAATTCAAAAAT | 59.250 | 36.000 | 1.45 | 0.00 | 37.34 | 1.82 |
2901 | 3163 | 5.978919 | TGATGAGCGGCATAATTCAAAAATC | 59.021 | 36.000 | 1.45 | 0.00 | 37.34 | 2.17 |
2911 | 3173 | 7.113965 | GGCATAATTCAAAAATCTAGTGCATCG | 59.886 | 37.037 | 0.00 | 0.00 | 0.00 | 3.84 |
2914 | 3176 | 5.545658 | TTCAAAAATCTAGTGCATCGTCC | 57.454 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
2918 | 3180 | 4.744795 | AAATCTAGTGCATCGTCCTTCT | 57.255 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
2920 | 3182 | 5.446143 | AATCTAGTGCATCGTCCTTCTAG | 57.554 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
2923 | 3185 | 4.948004 | TCTAGTGCATCGTCCTTCTAGAAA | 59.052 | 41.667 | 6.63 | 0.00 | 33.49 | 2.52 |
2934 | 3196 | 4.000988 | TCCTTCTAGAAACAAATGGCGAC | 58.999 | 43.478 | 6.63 | 0.00 | 0.00 | 5.19 |
2953 | 3215 | 2.605366 | GACGCTATCTTTTCTCTGTGCC | 59.395 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2984 | 3248 | 3.003793 | GGGACTGCTTGTTCTCAAAGTTC | 59.996 | 47.826 | 0.00 | 0.00 | 32.87 | 3.01 |
2985 | 3249 | 3.879892 | GGACTGCTTGTTCTCAAAGTTCT | 59.120 | 43.478 | 0.00 | 0.00 | 32.87 | 3.01 |
2986 | 3250 | 5.057149 | GGACTGCTTGTTCTCAAAGTTCTA | 58.943 | 41.667 | 0.00 | 0.00 | 32.87 | 2.10 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 3.723348 | GTTTCAGGTGCGGCGGAC | 61.723 | 66.667 | 23.91 | 23.91 | 0.00 | 4.79 |
9 | 10 | 4.025401 | GTGGGCGTTTCAGGTGCG | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
10 | 11 | 4.025401 | CGTGGGCGTTTCAGGTGC | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
24 | 25 | 3.443045 | GCCTTCCATGGCCACGTG | 61.443 | 66.667 | 8.16 | 9.08 | 46.82 | 4.49 |
31 | 32 | 2.335092 | ATCTGCTCCGCCTTCCATGG | 62.335 | 60.000 | 4.97 | 4.97 | 0.00 | 3.66 |
32 | 33 | 0.465097 | AATCTGCTCCGCCTTCCATG | 60.465 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
33 | 34 | 1.131638 | TAATCTGCTCCGCCTTCCAT | 58.868 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
34 | 35 | 0.178068 | GTAATCTGCTCCGCCTTCCA | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
35 | 36 | 0.466124 | AGTAATCTGCTCCGCCTTCC | 59.534 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
36 | 37 | 3.454371 | TTAGTAATCTGCTCCGCCTTC | 57.546 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
37 | 38 | 3.432326 | CCTTTAGTAATCTGCTCCGCCTT | 60.432 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
38 | 39 | 2.103263 | CCTTTAGTAATCTGCTCCGCCT | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
39 | 40 | 2.484889 | CCTTTAGTAATCTGCTCCGCC | 58.515 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
40 | 41 | 1.867865 | GCCTTTAGTAATCTGCTCCGC | 59.132 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
41 | 42 | 2.128035 | CGCCTTTAGTAATCTGCTCCG | 58.872 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
42 | 43 | 3.124560 | GACGCCTTTAGTAATCTGCTCC | 58.875 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
43 | 44 | 2.789893 | CGACGCCTTTAGTAATCTGCTC | 59.210 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
44 | 45 | 2.426024 | TCGACGCCTTTAGTAATCTGCT | 59.574 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
45 | 46 | 2.805845 | TCGACGCCTTTAGTAATCTGC | 58.194 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
46 | 47 | 6.144080 | CCTTTATCGACGCCTTTAGTAATCTG | 59.856 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
47 | 48 | 6.214399 | CCTTTATCGACGCCTTTAGTAATCT | 58.786 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
48 | 49 | 5.404667 | CCCTTTATCGACGCCTTTAGTAATC | 59.595 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
49 | 50 | 5.295152 | CCCTTTATCGACGCCTTTAGTAAT | 58.705 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
50 | 51 | 4.441913 | CCCCTTTATCGACGCCTTTAGTAA | 60.442 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
51 | 52 | 3.068590 | CCCCTTTATCGACGCCTTTAGTA | 59.931 | 47.826 | 0.00 | 0.00 | 0.00 | 1.82 |
52 | 53 | 2.159000 | CCCCTTTATCGACGCCTTTAGT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
53 | 54 | 2.480845 | CCCCTTTATCGACGCCTTTAG | 58.519 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
54 | 55 | 1.473788 | GCCCCTTTATCGACGCCTTTA | 60.474 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
55 | 56 | 0.746923 | GCCCCTTTATCGACGCCTTT | 60.747 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
56 | 57 | 1.153229 | GCCCCTTTATCGACGCCTT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
57 | 58 | 2.029307 | GAGCCCCTTTATCGACGCCT | 62.029 | 60.000 | 0.00 | 0.00 | 0.00 | 5.52 |
58 | 59 | 1.594564 | GAGCCCCTTTATCGACGCC | 60.595 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
59 | 60 | 0.672342 | TAGAGCCCCTTTATCGACGC | 59.328 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
60 | 61 | 3.256136 | AGATTAGAGCCCCTTTATCGACG | 59.744 | 47.826 | 0.00 | 0.00 | 0.00 | 5.12 |
61 | 62 | 4.322123 | GGAGATTAGAGCCCCTTTATCGAC | 60.322 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
62 | 63 | 3.833070 | GGAGATTAGAGCCCCTTTATCGA | 59.167 | 47.826 | 0.00 | 0.00 | 0.00 | 3.59 |
63 | 64 | 3.835395 | AGGAGATTAGAGCCCCTTTATCG | 59.165 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
64 | 65 | 4.841246 | TGAGGAGATTAGAGCCCCTTTATC | 59.159 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
65 | 66 | 4.832492 | TGAGGAGATTAGAGCCCCTTTAT | 58.168 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
66 | 67 | 4.227197 | CTGAGGAGATTAGAGCCCCTTTA | 58.773 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
67 | 68 | 3.044894 | CTGAGGAGATTAGAGCCCCTTT | 58.955 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
68 | 69 | 2.688477 | CTGAGGAGATTAGAGCCCCTT | 58.312 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
69 | 70 | 1.132881 | CCTGAGGAGATTAGAGCCCCT | 60.133 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
70 | 71 | 1.347062 | CCTGAGGAGATTAGAGCCCC | 58.653 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
71 | 72 | 1.967779 | GACCTGAGGAGATTAGAGCCC | 59.032 | 57.143 | 4.99 | 0.00 | 0.00 | 5.19 |
72 | 73 | 1.611491 | CGACCTGAGGAGATTAGAGCC | 59.389 | 57.143 | 4.99 | 0.00 | 0.00 | 4.70 |
73 | 74 | 1.611491 | CCGACCTGAGGAGATTAGAGC | 59.389 | 57.143 | 4.99 | 0.00 | 0.00 | 4.09 |
74 | 75 | 2.235016 | CCCGACCTGAGGAGATTAGAG | 58.765 | 57.143 | 4.99 | 0.00 | 0.00 | 2.43 |
75 | 76 | 1.569548 | ACCCGACCTGAGGAGATTAGA | 59.430 | 52.381 | 4.99 | 0.00 | 0.00 | 2.10 |
81 | 82 | 2.650116 | CCACACCCGACCTGAGGAG | 61.650 | 68.421 | 4.99 | 0.00 | 0.00 | 3.69 |
87 | 88 | 3.907027 | CTCCCTCCACACCCGACCT | 62.907 | 68.421 | 0.00 | 0.00 | 0.00 | 3.85 |
107 | 108 | 2.507471 | AGAGAAGTCATGAATCACCCCC | 59.493 | 50.000 | 0.00 | 0.00 | 0.00 | 5.40 |
118 | 119 | 9.030452 | ACTCTCACATAAAACTAGAGAAGTCAT | 57.970 | 33.333 | 0.00 | 0.00 | 37.50 | 3.06 |
129 | 130 | 8.598041 | AGAATACTGGAACTCTCACATAAAACT | 58.402 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
134 | 135 | 9.647918 | AATCTAGAATACTGGAACTCTCACATA | 57.352 | 33.333 | 0.00 | 0.00 | 37.20 | 2.29 |
157 | 158 | 9.508567 | GTTCATTCAGCCTTGTTAATCTTAATC | 57.491 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
174 | 175 | 8.671921 | AGCTATCTGTGTATTTTGTTCATTCAG | 58.328 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
175 | 176 | 8.565896 | AGCTATCTGTGTATTTTGTTCATTCA | 57.434 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
184 | 185 | 5.577164 | GTGTCGTGAGCTATCTGTGTATTTT | 59.423 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
198 | 199 | 0.384309 | TATCATCGGGTGTCGTGAGC | 59.616 | 55.000 | 0.00 | 0.00 | 40.32 | 4.26 |
199 | 200 | 1.001268 | CCTATCATCGGGTGTCGTGAG | 60.001 | 57.143 | 0.00 | 0.00 | 40.32 | 3.51 |
201 | 202 | 0.032130 | CCCTATCATCGGGTGTCGTG | 59.968 | 60.000 | 0.00 | 0.00 | 40.32 | 4.35 |
208 | 209 | 2.028020 | GGTTTCTAGCCCTATCATCGGG | 60.028 | 54.545 | 0.00 | 0.00 | 44.89 | 5.14 |
254 | 255 | 0.178301 | GAATTGTCCCCGTCTCCCTC | 59.822 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
262 | 263 | 2.484264 | GAGAAGTTGTGAATTGTCCCCG | 59.516 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
275 | 276 | 5.529791 | TCTCGTAAAACCAGAGAGAAGTTG | 58.470 | 41.667 | 0.00 | 0.00 | 36.25 | 3.16 |
276 | 277 | 5.786264 | TCTCGTAAAACCAGAGAGAAGTT | 57.214 | 39.130 | 0.00 | 0.00 | 36.25 | 2.66 |
285 | 286 | 3.258622 | AGGGAACTCTCTCGTAAAACCAG | 59.741 | 47.826 | 0.00 | 0.00 | 32.90 | 4.00 |
286 | 287 | 3.236896 | AGGGAACTCTCTCGTAAAACCA | 58.763 | 45.455 | 0.00 | 0.00 | 32.90 | 3.67 |
287 | 288 | 3.957591 | AGGGAACTCTCTCGTAAAACC | 57.042 | 47.619 | 0.00 | 0.00 | 32.90 | 3.27 |
295 | 296 | 9.802039 | TCTTAATCTAGAATAGGGAACTCTCTC | 57.198 | 37.037 | 0.00 | 0.00 | 43.67 | 3.20 |
324 | 326 | 6.710744 | AGTTGATTACTTCATTCAACCTCGTT | 59.289 | 34.615 | 10.47 | 0.00 | 46.58 | 3.85 |
327 | 329 | 8.999431 | TGTTAGTTGATTACTTCATTCAACCTC | 58.001 | 33.333 | 10.47 | 4.09 | 46.58 | 3.85 |
328 | 330 | 8.784043 | GTGTTAGTTGATTACTTCATTCAACCT | 58.216 | 33.333 | 10.47 | 3.11 | 46.58 | 3.50 |
340 | 342 | 7.088589 | TCTAGGTACCGTGTTAGTTGATTAC | 57.911 | 40.000 | 6.18 | 0.00 | 0.00 | 1.89 |
369 | 371 | 8.366401 | CCACCATGCATAATTTATTGGATTACA | 58.634 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
370 | 372 | 8.584157 | TCCACCATGCATAATTTATTGGATTAC | 58.416 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
391 | 393 | 4.793201 | AGCAACCCTAGAATAAATCCACC | 58.207 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
395 | 397 | 7.510407 | ACCTCTTAGCAACCCTAGAATAAATC | 58.490 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
401 | 403 | 4.164981 | TGAACCTCTTAGCAACCCTAGAA | 58.835 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
421 | 423 | 3.649502 | ACTGACCATGCATCTGGATATGA | 59.350 | 43.478 | 13.35 | 0.00 | 39.73 | 2.15 |
425 | 427 | 1.841919 | TCACTGACCATGCATCTGGAT | 59.158 | 47.619 | 13.35 | 0.00 | 39.73 | 3.41 |
426 | 428 | 1.208776 | CTCACTGACCATGCATCTGGA | 59.791 | 52.381 | 13.35 | 0.00 | 39.73 | 3.86 |
430 | 432 | 1.099879 | GGCCTCACTGACCATGCATC | 61.100 | 60.000 | 0.00 | 0.00 | 0.00 | 3.91 |
443 | 445 | 1.076559 | CCATCCTTGCATGGCCTCA | 60.077 | 57.895 | 13.75 | 0.00 | 37.12 | 3.86 |
458 | 460 | 2.203938 | ACGTCCTCCACCCACCAT | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
474 | 480 | 1.142748 | CCGAGTGATCCAGGCTGAC | 59.857 | 63.158 | 17.94 | 5.96 | 0.00 | 3.51 |
477 | 483 | 3.842923 | CGCCGAGTGATCCAGGCT | 61.843 | 66.667 | 13.43 | 0.00 | 46.85 | 4.58 |
487 | 493 | 1.376812 | GGGAATTCAACCGCCGAGT | 60.377 | 57.895 | 7.93 | 0.00 | 0.00 | 4.18 |
492 | 498 | 2.760634 | AATTTGGGGAATTCAACCGC | 57.239 | 45.000 | 7.93 | 0.00 | 40.13 | 5.68 |
504 | 510 | 0.394352 | CGGAGGGTGAGGAATTTGGG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 4.12 |
505 | 511 | 1.032114 | GCGGAGGGTGAGGAATTTGG | 61.032 | 60.000 | 0.00 | 0.00 | 0.00 | 3.28 |
507 | 513 | 1.078426 | CGCGGAGGGTGAGGAATTT | 60.078 | 57.895 | 0.00 | 0.00 | 34.98 | 1.82 |
516 | 522 | 4.779733 | AGGATGGTCGCGGAGGGT | 62.780 | 66.667 | 6.13 | 0.00 | 42.82 | 4.34 |
532 | 538 | 2.780010 | ACTAGGTGATGAATCCCCCAAG | 59.220 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
533 | 539 | 2.858644 | ACTAGGTGATGAATCCCCCAA | 58.141 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
535 | 541 | 3.328050 | CCTAACTAGGTGATGAATCCCCC | 59.672 | 52.174 | 0.00 | 0.00 | 38.69 | 5.40 |
555 | 561 | 1.076923 | ATCGAGTCGCTACCACCCT | 60.077 | 57.895 | 7.92 | 0.00 | 0.00 | 4.34 |
575 | 581 | 2.130193 | AGTGCTATCCCATGACCACAT | 58.870 | 47.619 | 0.00 | 0.00 | 37.19 | 3.21 |
596 | 602 | 3.674753 | GCAAAGCATGAAAAATACGCACT | 59.325 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
603 | 609 | 9.452287 | AAAACATATAGGCAAAGCATGAAAAAT | 57.548 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
636 | 648 | 1.951209 | TAGCATTGACTCCCACCTCA | 58.049 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
641 | 653 | 1.340017 | GCCACTTAGCATTGACTCCCA | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
642 | 654 | 1.065126 | AGCCACTTAGCATTGACTCCC | 60.065 | 52.381 | 0.00 | 0.00 | 34.23 | 4.30 |
650 | 662 | 2.431954 | ATCTGCAAGCCACTTAGCAT | 57.568 | 45.000 | 0.00 | 0.00 | 36.28 | 3.79 |
655 | 667 | 1.999648 | TCCAAATCTGCAAGCCACTT | 58.000 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
662 | 674 | 4.422840 | CGCACATAATTCCAAATCTGCAA | 58.577 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
666 | 678 | 3.023119 | TGGCGCACATAATTCCAAATCT | 58.977 | 40.909 | 10.83 | 0.00 | 0.00 | 2.40 |
711 | 723 | 2.434884 | CATGTTGCGCTCGGGAGT | 60.435 | 61.111 | 9.73 | 0.00 | 0.00 | 3.85 |
750 | 762 | 1.001487 | TGCACTCAAAGATTTGCACCG | 60.001 | 47.619 | 0.30 | 0.00 | 40.01 | 4.94 |
751 | 763 | 2.796593 | GTTGCACTCAAAGATTTGCACC | 59.203 | 45.455 | 0.30 | 0.00 | 44.44 | 5.01 |
767 | 779 | 3.311486 | TGTATCACGAGTCATGTTGCA | 57.689 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
780 | 792 | 6.734137 | TGTTGTGTTTGGAGATTTGTATCAC | 58.266 | 36.000 | 0.00 | 0.00 | 32.95 | 3.06 |
785 | 797 | 4.740334 | GCCATGTTGTGTTTGGAGATTTGT | 60.740 | 41.667 | 0.00 | 0.00 | 31.94 | 2.83 |
807 | 820 | 3.857010 | GCTTGGAGGTTTACAACATGTGC | 60.857 | 47.826 | 0.00 | 0.00 | 0.00 | 4.57 |
809 | 822 | 3.317993 | GTGCTTGGAGGTTTACAACATGT | 59.682 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
826 | 839 | 0.112995 | ACATGGGTCATGGTGTGCTT | 59.887 | 50.000 | 11.85 | 0.00 | 45.16 | 3.91 |
833 | 846 | 1.682854 | GGTATGCAACATGGGTCATGG | 59.317 | 52.381 | 11.85 | 0.00 | 45.16 | 3.66 |
858 | 871 | 1.880340 | GCTCGGTCTGATTCAGCCG | 60.880 | 63.158 | 28.50 | 28.50 | 45.29 | 5.52 |
859 | 872 | 1.880340 | CGCTCGGTCTGATTCAGCC | 60.880 | 63.158 | 8.89 | 11.87 | 0.00 | 4.85 |
864 | 877 | 0.391661 | ATGTTGCGCTCGGTCTGATT | 60.392 | 50.000 | 9.73 | 0.00 | 0.00 | 2.57 |
908 | 922 | 2.161855 | TGAGGCTTGCAACCATGTTAG | 58.838 | 47.619 | 16.93 | 0.00 | 0.00 | 2.34 |
919 | 933 | 1.140452 | TCAGATCCTGATGAGGCTTGC | 59.860 | 52.381 | 0.00 | 0.00 | 39.57 | 4.01 |
938 | 952 | 0.387929 | TAGCCGTTGGATCCATCGTC | 59.612 | 55.000 | 32.63 | 25.44 | 37.42 | 4.20 |
963 | 977 | 6.427853 | ACTGATGTTTTGAAATGATCGACTGA | 59.572 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
1059 | 1078 | 1.337167 | GGTATATGTAACGGCGGGGTC | 60.337 | 57.143 | 13.24 | 0.00 | 0.00 | 4.46 |
1101 | 1128 | 4.400251 | ACCTGACGGGGGAGGAGG | 62.400 | 72.222 | 5.03 | 0.00 | 40.03 | 4.30 |
1117 | 1144 | 4.838486 | CGAGCCGGCGAGACAGAC | 62.838 | 72.222 | 23.20 | 5.42 | 0.00 | 3.51 |
1142 | 1169 | 0.106918 | TGAGGTTTTGTGGCGAAGGT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1152 | 1179 | 0.234884 | GTTCGCCGTCTGAGGTTTTG | 59.765 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1169 | 1196 | 2.486636 | TTCGATCGACGCCAGCAGTT | 62.487 | 55.000 | 19.26 | 0.00 | 42.26 | 3.16 |
1175 | 1202 | 1.420641 | CTGCATTTCGATCGACGCCA | 61.421 | 55.000 | 19.26 | 11.48 | 42.26 | 5.69 |
1243 | 1270 | 1.661821 | CGGAGCATAGGTAGCGTGC | 60.662 | 63.158 | 14.80 | 14.80 | 39.10 | 5.34 |
1264 | 1291 | 0.534427 | TCGTCACACTCACCGTCTCT | 60.534 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1466 | 1493 | 2.034687 | AGCTCATGGTGGTGGTGC | 59.965 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
1524 | 1551 | 3.554342 | CGGATGGGGGAGAGGCAG | 61.554 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
1698 | 1737 | 2.091333 | AGAGGAAGAGGAGGAGGATGAC | 60.091 | 54.545 | 0.00 | 0.00 | 0.00 | 3.06 |
1701 | 1740 | 1.412937 | GCAGAGGAAGAGGAGGAGGAT | 60.413 | 57.143 | 0.00 | 0.00 | 0.00 | 3.24 |
1824 | 1863 | 1.066585 | ATGGCAGCCAGGATCCTGAT | 61.067 | 55.000 | 38.37 | 24.97 | 46.30 | 2.90 |
1855 | 1894 | 4.643387 | AGCTTTCTTGGCCCGCGT | 62.643 | 61.111 | 4.92 | 0.00 | 0.00 | 6.01 |
2164 | 2203 | 9.663904 | ATTTGCGATGTATACATAACATTGTTC | 57.336 | 29.630 | 18.28 | 3.06 | 39.81 | 3.18 |
2323 | 2362 | 5.984926 | TGAACAATGGAGAACAAAATTCAGC | 59.015 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2332 | 2371 | 5.850557 | AACACAATGAACAATGGAGAACA | 57.149 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
2333 | 2372 | 5.399301 | CGAAACACAATGAACAATGGAGAAC | 59.601 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2341 | 2380 | 6.184580 | ACTAACACGAAACACAATGAACAA | 57.815 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2343 | 2382 | 6.707711 | TGTACTAACACGAAACACAATGAAC | 58.292 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2419 | 2519 | 4.746611 | CAGGATTGTTTGTCAAAGCCTTTC | 59.253 | 41.667 | 0.00 | 0.00 | 40.45 | 2.62 |
2464 | 2723 | 7.671495 | ACGCATACATGAGATTGCAATATTA | 57.329 | 32.000 | 12.97 | 6.44 | 34.80 | 0.98 |
2469 | 2728 | 4.700268 | AAACGCATACATGAGATTGCAA | 57.300 | 36.364 | 0.00 | 0.00 | 34.80 | 4.08 |
2502 | 2761 | 8.874744 | ACATTAGACTTGTAGTACTCCAGTAA | 57.125 | 34.615 | 0.00 | 0.00 | 31.52 | 2.24 |
2503 | 2762 | 8.105197 | TGACATTAGACTTGTAGTACTCCAGTA | 58.895 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2504 | 2763 | 6.946583 | TGACATTAGACTTGTAGTACTCCAGT | 59.053 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
2505 | 2764 | 7.392494 | TGACATTAGACTTGTAGTACTCCAG | 57.608 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2506 | 2765 | 7.956328 | ATGACATTAGACTTGTAGTACTCCA | 57.044 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2571 | 2830 | 6.258287 | TCTCGTTAAAACAAGGTTTTGATCGA | 59.742 | 34.615 | 15.27 | 17.36 | 37.73 | 3.59 |
2573 | 2832 | 7.636326 | TCTCTCGTTAAAACAAGGTTTTGATC | 58.364 | 34.615 | 15.27 | 6.44 | 37.73 | 2.92 |
2576 | 2835 | 8.455598 | TTTTCTCTCGTTAAAACAAGGTTTTG | 57.544 | 30.769 | 15.27 | 1.81 | 40.24 | 2.44 |
2623 | 2882 | 6.732896 | TGACTTCAGTAACTTCCTTCTTCT | 57.267 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
2624 | 2883 | 5.407084 | GCTGACTTCAGTAACTTCCTTCTTC | 59.593 | 44.000 | 8.04 | 0.00 | 45.45 | 2.87 |
2625 | 2884 | 5.163301 | TGCTGACTTCAGTAACTTCCTTCTT | 60.163 | 40.000 | 8.04 | 0.00 | 45.45 | 2.52 |
2686 | 2948 | 3.307480 | GGGAGTACAAGTGTAAGGTGCAT | 60.307 | 47.826 | 0.00 | 0.00 | 31.52 | 3.96 |
2687 | 2949 | 2.038033 | GGGAGTACAAGTGTAAGGTGCA | 59.962 | 50.000 | 0.00 | 0.00 | 31.52 | 4.57 |
2690 | 2952 | 3.171528 | GGAGGGAGTACAAGTGTAAGGT | 58.828 | 50.000 | 0.00 | 0.00 | 31.52 | 3.50 |
2698 | 2960 | 0.613853 | TGGGACGGAGGGAGTACAAG | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2703 | 2965 | 1.004394 | GAATTTTGGGACGGAGGGAGT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2704 | 2966 | 1.282157 | AGAATTTTGGGACGGAGGGAG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2705 | 2967 | 1.368374 | AGAATTTTGGGACGGAGGGA | 58.632 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2707 | 2969 | 2.488153 | GACAAGAATTTTGGGACGGAGG | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2708 | 2970 | 3.412386 | AGACAAGAATTTTGGGACGGAG | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
2709 | 2971 | 3.502123 | AGACAAGAATTTTGGGACGGA | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
2710 | 2972 | 4.517453 | TGTAAGACAAGAATTTTGGGACGG | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
2711 | 2973 | 5.682943 | TGTAAGACAAGAATTTTGGGACG | 57.317 | 39.130 | 5.68 | 0.00 | 0.00 | 4.79 |
2730 | 2992 | 9.970553 | AGGTACATCCGTATCTAGATAAATGTA | 57.029 | 33.333 | 23.81 | 23.81 | 37.29 | 2.29 |
2731 | 2993 | 8.880991 | AGGTACATCCGTATCTAGATAAATGT | 57.119 | 34.615 | 25.07 | 25.07 | 37.29 | 2.71 |
2744 | 3006 | 9.970395 | CACATTTTAGTATTAGGTACATCCGTA | 57.030 | 33.333 | 0.00 | 0.00 | 41.99 | 4.02 |
2745 | 3007 | 8.698210 | TCACATTTTAGTATTAGGTACATCCGT | 58.302 | 33.333 | 0.00 | 0.00 | 41.99 | 4.69 |
2746 | 3008 | 8.975439 | GTCACATTTTAGTATTAGGTACATCCG | 58.025 | 37.037 | 0.00 | 0.00 | 41.99 | 4.18 |
2753 | 3015 | 8.893727 | GCATCAAGTCACATTTTAGTATTAGGT | 58.106 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
2754 | 3016 | 8.892723 | TGCATCAAGTCACATTTTAGTATTAGG | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2757 | 3019 | 8.408601 | GGATGCATCAAGTCACATTTTAGTATT | 58.591 | 33.333 | 27.25 | 0.00 | 0.00 | 1.89 |
2758 | 3020 | 7.254898 | CGGATGCATCAAGTCACATTTTAGTAT | 60.255 | 37.037 | 27.25 | 0.00 | 0.00 | 2.12 |
2759 | 3021 | 6.037062 | CGGATGCATCAAGTCACATTTTAGTA | 59.963 | 38.462 | 27.25 | 0.00 | 0.00 | 1.82 |
2760 | 3022 | 5.163723 | CGGATGCATCAAGTCACATTTTAGT | 60.164 | 40.000 | 27.25 | 0.00 | 0.00 | 2.24 |
2761 | 3023 | 5.163723 | ACGGATGCATCAAGTCACATTTTAG | 60.164 | 40.000 | 27.25 | 4.11 | 0.00 | 1.85 |
2762 | 3024 | 4.699735 | ACGGATGCATCAAGTCACATTTTA | 59.300 | 37.500 | 27.25 | 0.00 | 0.00 | 1.52 |
2763 | 3025 | 3.507233 | ACGGATGCATCAAGTCACATTTT | 59.493 | 39.130 | 27.25 | 0.78 | 0.00 | 1.82 |
2764 | 3026 | 3.084039 | ACGGATGCATCAAGTCACATTT | 58.916 | 40.909 | 27.25 | 1.45 | 0.00 | 2.32 |
2765 | 3027 | 2.715046 | ACGGATGCATCAAGTCACATT | 58.285 | 42.857 | 27.25 | 2.11 | 0.00 | 2.71 |
2766 | 3028 | 2.408271 | ACGGATGCATCAAGTCACAT | 57.592 | 45.000 | 27.25 | 2.78 | 0.00 | 3.21 |
2767 | 3029 | 3.541996 | ATACGGATGCATCAAGTCACA | 57.458 | 42.857 | 27.25 | 12.28 | 0.00 | 3.58 |
2768 | 3030 | 4.496341 | CCAAATACGGATGCATCAAGTCAC | 60.496 | 45.833 | 27.25 | 8.53 | 0.00 | 3.67 |
2769 | 3031 | 3.627123 | CCAAATACGGATGCATCAAGTCA | 59.373 | 43.478 | 27.25 | 14.60 | 0.00 | 3.41 |
2770 | 3032 | 3.876914 | TCCAAATACGGATGCATCAAGTC | 59.123 | 43.478 | 27.25 | 9.62 | 0.00 | 3.01 |
2771 | 3033 | 3.627577 | GTCCAAATACGGATGCATCAAGT | 59.372 | 43.478 | 27.25 | 25.40 | 37.41 | 3.16 |
2772 | 3034 | 3.627123 | TGTCCAAATACGGATGCATCAAG | 59.373 | 43.478 | 27.25 | 21.48 | 37.41 | 3.02 |
2773 | 3035 | 3.615155 | TGTCCAAATACGGATGCATCAA | 58.385 | 40.909 | 27.25 | 12.93 | 37.41 | 2.57 |
2774 | 3036 | 3.274095 | TGTCCAAATACGGATGCATCA | 57.726 | 42.857 | 27.25 | 8.37 | 37.41 | 3.07 |
2775 | 3037 | 4.630894 | TTTGTCCAAATACGGATGCATC | 57.369 | 40.909 | 18.81 | 18.81 | 37.41 | 3.91 |
2776 | 3038 | 4.889409 | AGATTTGTCCAAATACGGATGCAT | 59.111 | 37.500 | 0.00 | 0.00 | 40.77 | 3.96 |
2777 | 3039 | 4.269183 | AGATTTGTCCAAATACGGATGCA | 58.731 | 39.130 | 5.29 | 0.00 | 40.77 | 3.96 |
2778 | 3040 | 4.900635 | AGATTTGTCCAAATACGGATGC | 57.099 | 40.909 | 5.29 | 0.00 | 40.77 | 3.91 |
2779 | 3041 | 7.279981 | TGTCTTAGATTTGTCCAAATACGGATG | 59.720 | 37.037 | 5.29 | 0.00 | 40.77 | 3.51 |
2780 | 3042 | 7.335627 | TGTCTTAGATTTGTCCAAATACGGAT | 58.664 | 34.615 | 5.29 | 0.00 | 40.77 | 4.18 |
2781 | 3043 | 6.703319 | TGTCTTAGATTTGTCCAAATACGGA | 58.297 | 36.000 | 5.29 | 0.82 | 40.77 | 4.69 |
2782 | 3044 | 6.978343 | TGTCTTAGATTTGTCCAAATACGG | 57.022 | 37.500 | 5.29 | 0.00 | 40.77 | 4.02 |
2783 | 3045 | 8.251750 | TCTTGTCTTAGATTTGTCCAAATACG | 57.748 | 34.615 | 5.29 | 0.00 | 40.77 | 3.06 |
2793 | 3055 | 9.760660 | CGTCCTAAAATTCTTGTCTTAGATTTG | 57.239 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2794 | 3056 | 8.947115 | CCGTCCTAAAATTCTTGTCTTAGATTT | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2795 | 3057 | 8.319146 | TCCGTCCTAAAATTCTTGTCTTAGATT | 58.681 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2796 | 3058 | 7.848128 | TCCGTCCTAAAATTCTTGTCTTAGAT | 58.152 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
2797 | 3059 | 7.235935 | TCCGTCCTAAAATTCTTGTCTTAGA | 57.764 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2798 | 3060 | 6.535508 | CCTCCGTCCTAAAATTCTTGTCTTAG | 59.464 | 42.308 | 0.00 | 0.00 | 0.00 | 2.18 |
2799 | 3061 | 6.211986 | TCCTCCGTCCTAAAATTCTTGTCTTA | 59.788 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
2800 | 3062 | 5.012768 | TCCTCCGTCCTAAAATTCTTGTCTT | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2801 | 3063 | 4.530946 | TCCTCCGTCCTAAAATTCTTGTCT | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2802 | 3064 | 4.828829 | TCCTCCGTCCTAAAATTCTTGTC | 58.171 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2803 | 3065 | 4.903045 | TCCTCCGTCCTAAAATTCTTGT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2804 | 3066 | 5.246307 | ACTTCCTCCGTCCTAAAATTCTTG | 58.754 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2805 | 3067 | 5.500546 | ACTTCCTCCGTCCTAAAATTCTT | 57.499 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2806 | 3068 | 6.809976 | ATACTTCCTCCGTCCTAAAATTCT | 57.190 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
2807 | 3069 | 8.202811 | AGTAATACTTCCTCCGTCCTAAAATTC | 58.797 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
2808 | 3070 | 8.087303 | AGTAATACTTCCTCCGTCCTAAAATT | 57.913 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2809 | 3071 | 7.564292 | AGAGTAATACTTCCTCCGTCCTAAAAT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2810 | 3072 | 6.894103 | AGAGTAATACTTCCTCCGTCCTAAAA | 59.106 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
2811 | 3073 | 6.320672 | CAGAGTAATACTTCCTCCGTCCTAAA | 59.679 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
2812 | 3074 | 5.826737 | CAGAGTAATACTTCCTCCGTCCTAA | 59.173 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2813 | 3075 | 5.104193 | ACAGAGTAATACTTCCTCCGTCCTA | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2814 | 3076 | 4.208746 | CAGAGTAATACTTCCTCCGTCCT | 58.791 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
2815 | 3077 | 3.952967 | ACAGAGTAATACTTCCTCCGTCC | 59.047 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
2816 | 3078 | 5.579564 | AACAGAGTAATACTTCCTCCGTC | 57.420 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
2817 | 3079 | 5.997384 | AAACAGAGTAATACTTCCTCCGT | 57.003 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
2844 | 3106 | 1.270094 | GGTGTGTGACATTCGGACTCA | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2851 | 3113 | 4.756642 | TCTCTTGATTGGTGTGTGACATTC | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
2852 | 3114 | 4.717877 | TCTCTTGATTGGTGTGTGACATT | 58.282 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
2853 | 3115 | 4.356405 | TCTCTTGATTGGTGTGTGACAT | 57.644 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
2865 | 3127 | 3.529533 | CCGCTCATCACTTCTCTTGATT | 58.470 | 45.455 | 0.00 | 0.00 | 30.98 | 2.57 |
2880 | 3142 | 5.581126 | AGATTTTTGAATTATGCCGCTCA | 57.419 | 34.783 | 0.00 | 0.00 | 0.00 | 4.26 |
2881 | 3143 | 6.634436 | CACTAGATTTTTGAATTATGCCGCTC | 59.366 | 38.462 | 0.00 | 0.00 | 0.00 | 5.03 |
2884 | 3146 | 6.264832 | TGCACTAGATTTTTGAATTATGCCG | 58.735 | 36.000 | 0.00 | 0.00 | 0.00 | 5.69 |
2899 | 3161 | 4.720046 | TCTAGAAGGACGATGCACTAGAT | 58.280 | 43.478 | 0.00 | 0.00 | 33.82 | 1.98 |
2900 | 3162 | 4.152284 | TCTAGAAGGACGATGCACTAGA | 57.848 | 45.455 | 0.00 | 0.00 | 35.53 | 2.43 |
2901 | 3163 | 4.902443 | TTCTAGAAGGACGATGCACTAG | 57.098 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2911 | 3173 | 4.000988 | TCGCCATTTGTTTCTAGAAGGAC | 58.999 | 43.478 | 5.12 | 2.85 | 0.00 | 3.85 |
2914 | 3176 | 3.725010 | GCGTCGCCATTTGTTTCTAGAAG | 60.725 | 47.826 | 5.75 | 0.00 | 0.00 | 2.85 |
2918 | 3180 | 1.803334 | AGCGTCGCCATTTGTTTCTA | 58.197 | 45.000 | 14.86 | 0.00 | 0.00 | 2.10 |
2920 | 3182 | 2.351726 | AGATAGCGTCGCCATTTGTTTC | 59.648 | 45.455 | 14.86 | 0.00 | 0.00 | 2.78 |
2923 | 3185 | 2.024176 | AAGATAGCGTCGCCATTTGT | 57.976 | 45.000 | 14.86 | 0.00 | 0.00 | 2.83 |
2934 | 3196 | 2.863137 | GAGGCACAGAGAAAAGATAGCG | 59.137 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2953 | 3215 | 1.064906 | ACAAGCAGTCCCCATCATGAG | 60.065 | 52.381 | 0.09 | 0.00 | 0.00 | 2.90 |
3050 | 3314 | 6.906901 | ACTACTTATGGAAAGGGACATTAGGA | 59.093 | 38.462 | 0.00 | 0.00 | 30.36 | 2.94 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.