>input_sequence_61439
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---------------------------------------------------------ATGAAAAAACAGGTGGTTATACT
TGACCAAAGCCC-ACGAAGCCACGTACCACGACACGCGACCCCGCCGTTACAT--------ATACCGCCCGCTGCCCCTC
CACGATCCCTCCTCCCCCGTCAGGTCTGTCTCGCCGGCTCGGCCCCTCACCTTCGCCACAAAACCTCAGACGGCGAACTG
CTGGCGTCGATCGAAATGCAGGGCCACGCCCACGGCGAGAGCGGCCTCGCCACCGCACCTTCCAGCCCCGCACGCTACCT
ATGCTCCGGGAGAGACGGTGAGTGTGACGAAGACGGCGGAGGCATCCATTACTTCTTCAGCGCCCCGGCCAGCCCCGTGC
ACTACATCCTCCGTTCGCCGCCAGCGTCCTCCGCGTCGGTCCACTACGCTCCCTCCGCGGATGGAGACTTCTGCACGGCC
CCCGGCGACTTCGAGTTCGCCGCGCGCCACCGTGGTATCGACGGCGCCGGCGGCACCACCACCATGAGCTCCGCCGAGGA
GCTCTTCCTCTCGGGCCGTATCCGCGTAGGCTGCCTCTCCCCCATCCGCCAAGAAACGGATTGCAGGGAGCAGCAGGGGG
AGGACGG---------GGGCGGCGTCGACGGCCGCTCGCCGCGGCCTCGCCGGACCAGGTCGGTTTCGCCGCCCCGGAGC
CCGCGGCTCGCGAAGACTGCAGAGCCTGCCGACTCCTTGGCATCAGCGTC---GTCGTCATCCTCCTCCTCTTCCTCTGC
CAAGACCATGCGGCGGAGGATATCGCTGCGGGACCTCCTCGGCCGCACCTGCAGCGATCCCTCGATGAGGCCGCCGGCTC
CTATTACCACCGCCGCCGAGAGATCAGGATCCTGGCTGCCATCTATCTGGCCGACGCGGGCCAAGAAAGCTCTGCCCTGC
TCGGCGCCGCAGCCTGCTCGCCGGTCAGTTTCGTCGGTCAGGGCCGCAGCACCGGGCGGCGCGGGGCGCGATGAGGGGCC
GCGGCGGCGCACAACGTCTCTGCCTTACCGGCAAGGCCTGGTTCTTGGATGCCTCGGCTTAGGAGCCCGGAGCTACGGGC
TCGCAAAGTCCATGCACCCCCTCTCCACGCGGTGA---------------------------------------------
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>chr3B_1_TraesCS3B01G203100
GGGGTCCGCCGCACCTGAAACGCCCACGTGGCCATGGAAGGCGGAGCAGATTACTAAAGGCGTCGATAAAGGGGCTCTAA
TCTCCTCAGGTCGGGTGTGGAGGGAGAGGGGGTGATTCATGACTTCTCTAGTTTTATGTGAGAGTTCCAGTATTCTAGAT
TAAGATTAACAAGGCTGAATGAACAAAATACACAGATAGCTCACGACACCCGATGATAGGGCTAGAAACCCTAATCTCCT
CAAGGTCAGGTGTGGAGGGAGACGGGGACAATTCACAACTTCTCTCTGGTTTTACGAGAGAGTTC-CCTATTCTAGATTA
AGATTAACGAGGTTGAATGAAGTAATCAACTAACACGGTACCTAGAAATTTGTAATCCAATAAATTATGCATGGTGGATT
TATTCTAGGGTTGCTAAGAGGTTCATATCCAGATGCATGGTCAGTGAGGCCATGCAAGGATGGTGGGTGG----AGGACG
TCAGCCTGGATCACTCGGCGGTTGAATTCCCCAAATTCCTCACCCTCCGCGACCATCCTTGGGGGATTCATCACCTAGTT
AGGGTGGTAGCGACTCGATCATGTGGTCATGGGATAGCACTAGTGCGTATTTTTCATGCTTTGCCTATATG------TTT
TTTTTTGTGAGGTGGGAGTCAATGCTAAGTGGCTTGCAGATTTGGAATTATGTGCGCCACCCACATATTGATTCTTTGCA
AAACTCCCGAGCGCAACATGGCTCTTGTTGCAAAGCACTCGCGGTGCAAATCTTTGAGTGCAACATGACTCGTGATACAA
ATCTCCAAA-CACAACATGGCACATGTTGTAAACCTCCAAGCACACCATGACCCATGTTGCATACCTCGTCGGCTGAATC
AGACCGAGCGC-AACATAACATGTGTTGCAAACCTTCAAGCCTAACATGGTTGCAAGCCTCATCAGGATCTGACGATGGA
TCCAACGGCTAGCGACTCAGTCGATCATTTCAAAACATCAGTCGACCGA----TAGGATGAAAAAACAGGTGGTTATACT
TGACCAAAGCCC-ACGAAGCCACGTACCACGACACGCGACCCCGCCGTTACAT--------ATACCGCCCGCTGCCCCTC
CACGATCCCTCCTCCCCCGTCAGGTCTGTCTCGCCGGCTCGGCCCCTCACCTTCGCCACAAAACCTCAGACGGCGAACTG
CTGGCGTCGATCGAAATGCAGGGCCACGCCCACGGCGAGAGCGGCCTCGCCACCGCACCTTCCAGCCCCGCACGCTACCT
ATGCTCCGGGAGAGACGGTGAGTGTGACGAAGACGGCGGAGGCATCCATTACTTCTTCAGCGCCCCGGCCAGCCCCGTGC
ACTACATCCTCCGTTCGCCGCCAGCGTCCTCCGCGTCGGTCCACTACGCTCCCTCCGCGGATGGAGACTTCTGCACGGCC
CCCGGCGACTTCGAGTTCGCCGCGCGCCACCGTGGTATCGACGGCGCCGGCGGCACCACCACCATGAGCTCCGCCGAGGA
GCTCTTCCTCTCGGGCCGTATCCGCGTAGGCTGCCTCTCCCCCATCCGCCAAGAAACGGATTGCAGGGAGCAGCAGGGGG
AGGACGG---------GGGCGGCGTCGACGGCCGCTCGCCGCGGCCTCGCCGGACCAGGTCGGTTTCGCCGCCCCGGAGC
CCGCGGCTCGCGAAGACTGCAGAGCCTGCCGACTCCTTGGCATCAGCGTC---GTCGTCATCCTCCTCCTCTTCCTCTGC
CAAGACCATGCGGCGGAGGATATCGCTGCGGGACCTCCTCGGCCGCACCTGCAGCGATCCCTCGATGAGGCCGCCGGCTC
CTATTACCACCGCCGCCGAGAGATCAGGATCCTGGCTGCCATCTATCTGGCCGACGCGGGCCAAGAAAGCTCTGCCCTGC
TCGGCGCCGCAGCCTGCTCGCCGGTCAGTTTCGTCGGTCAGGGCCGCAGCACCGGGCGGCGCGGGGCGCGATGAGGGGCC
GCGGCGGCGCACAACGTCTCTGCCTTACCGGCAAGGCCTGGTTCTTGGATGCCTCGGCTTAGGAGCCCGGAGCTACGGGC
TCGCAAAGTCCATGCACCCCCTCTCCACGCGGTGATCTCGGCACGTCTGGCAAGTGGCAAGGCATAGTTTCAGGGCTTAC
CTGAAAAATATTTGATGCGCTTTTATCCCCAGTGCAAAATGGGAACAATGTTATGTATACATCGCAAATACAGTATGATT
TTGTTCAGCCGGCTCAATCTTTGTTATGTGGGAGTCCTATTTTAGTTATTTGATTGAAGGATAAATTGTTACCCATATCA
ATTCCTTACTTCATCATATTGTAAGGAATAAACATCTTTGTGCTGAATTTTGTTCTCCATTGTTCATTGTGTTTCGTGTT
AGTACA---------------------------------------------------------TTTTTTTTTCTTACTCC
ATCTGTCCAAATGCAATGTGCATTT----TATTTGTTAGAAAGGCTTTGACAAACAAT----------------------
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--------------------------------------------------------CCTGCAAAC-AAAACAATTACTGG
ATTAATATTGCAATCTCATGTATGCGTTTTTTTAATACTATTACTGGAGTACTACAAGTCTAATGTCATTAATATTATTC
TCATAAATCATATATTAACAAAGTAAATCTCGATCAAAACCTTGTTTTAACGAGAGAAAAAATGCACCTTACAGTTTTAT
TAGAAGAAGGAAGTTACTGAAGTCAGCAACAAAAAACATAGAAGAAGGGAGTTAC---ATATCTAAAATGCACCTTACAC
TTGTACTCCCTCCGTCCCAAAATTCTTGTCTTACATTTATCTAGATACGGATGTACCTAATACTAAAATGTGACTTGATG
CATCCGTATTTGGACAAATCTAAGACAAGAATTTTAGGACGGAGGAAGTATTACTCTGTTTTTTGTGAGTCCGAATGTCA
CACACCAATCAAGAGAAGTGATGAGCGGCATAATTCAAAAATCTAGTGCATCGTCCTTCTAGAAACAAATGGCGACGCTA
TCTTTTCTCTGTGCCTCATGATGGGGACTG--CTTGTTCTCAAAGTTCTATAGTGGCATTGAAGCCTTTGGCCTCTTTGG
CTTGTGGACGATTTAAGAGGTTTTCTTCTAAATTCCTAATGTCCCTTTCCATAAGTAGTT
>chr3D_77
----------------------------------------------------------------------------CTAA
TGTCCTCGGGTCGGGTGTGGAGGGAGAAGGGACGATTCGTGACTTCTCTTGTTTCATGTGAGAGTTCCACTATTCTATAT
TAAGATTAACAAGGTGGAATGAACTAAATACACAGATAATTGACGACA-CCGGTGATGGGGCTAGAAACCCTAATCTCCT
CAAGGTCAGGTGTGAAGGGAGAGGGGGACAATTCATGACTTCTCTA--GTTTTACAAGAGAGTTCCCCTATTCTAGATTA
AGATTGACAGGGTTGAATGAACTAATCAACTAACACAATACCTAGAAATTCATAATCCAATAAATTATGCATCGTGCATT
TACTCTAGGGTTGCTAAGAGGTCCATCACCATATGCATGGTCAGCGAGGCCATGCAAGGGTGGTGGGTGGGTGCAGGACA
TCGGCCTGGATCTCTCGCTGGTCGAATTCGACGAATTCCTCGCCCTCCGCGGTCATCTCTAGGGGATT---CACCTAGTT
CGGGTGGTAGCGACTCGATCGTGTGGTCATGAGAGAGCACTGGTGCGTGTTTTTCATGCTCTGCCTATATGGCATCTTTT
TTTTTTGCGAGGCAGGAGTCAGTGCTCAGTGGCCTGCGGATTTGGAATCATGTGCGCCACCCACATATTGATTCTTTGCA
TACCTCCCAAGCGCAACATGGCTCTTGTTGCAAAGCACCCGTCGGGCAAACCTTTGAACGCAACATGACTCATGATGCAA
ACATCCAAT-CAGAACATGACCAATGTCGTAAACCTCTGAGCACAGCATGACCCATGTTGCATAACTCGTTAGCTGGATG
ATACCAAGCGC-AACATAATATGTATTGCAAACCTTCAAGCATAACATGGTTACAAGCCTCATCAGGATCTCACGACGGA
TCCAACGGCTAGCGACCCAGTCGATCATTTCAAAACATCAGTCGGCCGACGCGTAGGATTTAAAAACAGGTGGTTATACT
TGACCAAAGCCCCACGAAGCCACTTACCAAGACACGCAACCCCGCCGTTACATATACCGGCATACCGCCCGATGCCGCTC
CACGATCGCTCCTCACCGTTCAGTCTCGTCTCGCCGGCTCGGCCCCTCGCCTTCGCCAGAAAACCTCAGACGGCGCACTG
CCGGCGTCGATCGAAATGCAGGGCCACGCTGACAGCGAGAGCGGCCTCGCCACCGCGCCTTCCAGCCCCACACGCTACCT
CTGCTCCGGGCGAGACGGTGAGTGTGACGAAGACGGCGGAGGCATCCATTACTTCTTCAGCGCCCCGGCTAGCCCCGTGC
ACTACATCCTCCGTTCGCCGCCAGCGTCCTCCGCGTCGGCCCACTACGCTCCCTCCGCGGATGGAGACTTCTGCACGGCC
CCCGGCGACTTCGAGTTCGCCGCGCGCCACCGCGGCGTCGACGGCGCCGCCGCCGCCACCACCATGAGCTCCGCCGAGGA
GCTCTTCCTCTCCGGCCGTATCCGCGTAGGTTGCCTCTCCCCCATCCGCCAAGAAACGGATTGCAGGGAGCAGCAGGGGG
AGGACGGCGAGGACGGGGGCGGCGTCGAAGGCCGCTCACCGCGGCCTCGCCGGACCAGGTCAGCTTCGCCGCCCCGGAGC
CCGCGGCTCGCCAAGACTGCAGAGCCTGCCGACTCCTTGGCATCAGCGTCAACGTCATCCTCCTCCTCCTCTTCCTCTGC
CAAGACCATGCGGCGGAGGATATCGCTGCGGGACCTCCTCGGCCGCACCTGCAGCGATCCCTCGATGAGGCCGCCGGCTC
CTATTACCACCGCCGCCGAGAGGTCAGGATCCTGGCTGCCATCTATCTGGCCGGCGCGGGCCAAGAAAGCTCTGCCCTGC
CCGGCGCCGCAGCCTGCTCGCCGGTCAGTTTCGTCGGTCAGG---GCAGCACCGGGCGGCGCGGGGCGCGATGAGGGGCC
GCGGCGGCGCACAACGTCTCTGCCGTACCGGCAAGGCCTGGTCCTTGGATGCCTCGGCCTGGGAGCCCGGAGCTACGGGC
TCGCAAAGTCCATGCACCCCCTCTCCACGCGGTGATCTCGGCACGTCTGGCAAGTGGCAAGGCATAGTTTCAGGGCTTAC
CTG-AAAATATTTGATGCGCTTTTATCCCCAGTGCAAAATGGAAACAATGTTATGTATACATCGCAAATACAGTATGATT
TTGTTCAGTCGGCTCAATCTTCT---------------------------------------------------------
------------------TTGTAAGGAATAAACTTCTTTGTCCTGAATTTCATTCTCCACTATTCGTTGTGTTTCGTGTT
ACTCTCTCCCACCCATATTTTACTTGTCTTAGATTTATCTATGATACAAATCGGATTGAGTACTTTTTTTTTCTTACTCC
ATCTGTCGAAATGCAACGTGCATTT----TATTTGTTATAAAGGCTTTGACAAACAATTCGAAATGCAACGTGAGTAGTC
CACTTAGGGTGTTGGAGTGGTTGGGTGGGATCGCCGTTTTGTGACGATCTACCATGCAAACTCTTGTACATATCTTTCTC
TCTTCTATAAAGCTAAGGTACGCATTTGGCGTACTCTTGAAAAAAAGACAAACAATCCTGCAAACAAAAACAATCACTGG
ATCAATACTGCAATCTCATGTATGCGGC-TTTTAATACTA-----------CTACAAGTTTAATGCCATTAATATTATTC
ACATAAATCATATATTAACAAAGTAAATCACAATTAAAACCTTGTTTTAACGAACT--AAAATGCACCTTACATTTCAAT
T---AGAAGGAAGTTACTGAGGTCAGCAACAAAAAAAATAGAAGAAGGGGGTTAC---ATATCTAAAGCGCGCCTTACAT
TTGTGTAC------------------------------------------------------------------------
-----------------------------------------------------CTCTATTTTTTGCGAGTCCCGGTGTCA
CACACC-ATCAATAGAAGTGACAAGTGGCATAATTCAAAATCGTAGTGCATCTTCTTTCGAAAACCAAATGGCGATGCTA
TCTTTTCTCTGTGCGTCATGATGGGGACTGTACTTGTTCTCAAAGTTT--TAGTGGCATTGAAGCCTTTGGCCTCTTTGG
CTTGTGGACGATTTAAGAGGTTTTCTTCTAAATCCCTATTGTCCCTTTGCATTAGT----
>chr3A_687
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---------------------------------------------------------CACTCACATATTAATTCTTTGCA
AACCTCCCAAACGCAACATGACTCATGTTGTAAAGCACTCATCATGCAAATCTTTGAGCGCAACATGGCTCATGATGCAA
ATCTCCTAAGCACAACATGACCCATGTTGTAAACCTTCGAGCACATCATGACCCATGTTGCATACCTCGTTAGGTGGATC
AGACCGAGCGCAAACATAACATGTGTTCCAAACCTTCAAGCGTAACATGGTTACAAGCCTCGTCAGGATCTCACGATGGA
TCCAACGGCTGGCGCCCCAGTCGATCATTTGAAAACATCAGTCGACCGACCGGTAGGATGAAAAAACAGGTGGTTCTACT
TGACCAAAGCCCCACGAAGCCACGTACCAAGACACGCAACCCCGCCGTTACAT--------ATACCGCCCGCTGCCCCTC
CACGATCGGTCCTCCCCCGTCAGTCTCGTCTCGCCGGCTCGGCCCCTCGCCTTCGCCGGAAAACCTCAGACGGCGCACTG
CCGGCGTCGATCGAAATGCAGGGCCACGCTGACAGCGAGAGCGGCCTCGCCACCGCGCCTTCCAGCCCCACACGCTACCT
CTGCTCCGGGCGAGACGGTGAGTGTGACGAAGACGGCGGAGGCATCCATTACTTCTTCAGCGCCCCGGCCAGCCCCGTGC
ACTACATCCTCCGTTCGCCGCCAGCGTCCTCCGCGTCGGTCCACTACGCTCCCTCCACGGATGGAGACTTCTGCACGGCC
CCCGGCGACTTCGAGTTCGCCGCGCGCCACCGCGGTATCGACGGCGCCGGCGCCACCACCACCATGAGCTCCGCCGAGGA
GCTGTTCCTATCCGGCCGCATCCGCGTAGGTGGCCTCTCCCCCATCCGCCAAGAAACGGATTGCAGGGAGCAGCAGGGGG
AGGACGGTGAAGACGAGGGCGGCGTCGAAGGCCGCTCGCCGCGGCCTCGCCGGACCAGGTCGGCTTCGCCGCCCCGGAGC
CCGCGGCTCGCCAAGACTGCAGAGCCTGCCGACTTCTTGGCATCAGCGTCGTCGTCATCCTCCTCCTCCTCTTCCTCTGC
CAAGACCATGCGGCGGAGGATATCGCTGCGGGACCTCCTCGGCCGCACCTGCAGCGATCCCTCGATGAGGCCGCCGGCCC
CTATTACCACCGCCGCCGAGAGGTCAGGATCCTGGCTGCCATCTATCTGGCCGGCGCGGGCCAAGAAAGCTCTGCCCTCC
CCGGCGCCGCAGCCTGCTCGCCGGTCAGTTTCGTCGGTCAGG---GCAGCACCGGGCGGCGCGGGGCGCGATGAGGCGCC
GCGGCGGCGCACAACGTCTCTGCCGTACCGGCAAGGCCTGGTTCTTGGATGCCTCGGCCTAGGAGCCCGGAGCTACGGGC
TCGCAAAGTCCATGCACCCCCTCTCCACGCGGTGATCTCGGCACGTCTGGCAAGTGGCGAGGCATAGTTTCAGGGCTTAT
CTGAAAAATATTTGATGCGCTTTTATCCCCAGTGCAAAATGGAAACAATGTTATGTATACATCGCAAATACAGTATGATT
TTGTTCAGCCGGCTCAATCTTTGCTATGTGAGAGTCCTT------TTATTTGATTGAAGGAT-AATTGTTACCCATATCA
ATTCCTTACTTCAT---ATTGTAAGGAATAAACATCTTTGTCCTGAATTTCATTCTCCACTATTCGTTGTGTTTCGTGTT
ACTCTCTCCGACCCATAT--TACTTGTCTTAGATTTATCTATGATACAAATCAGATTGAGTACA-TTTTTTTCTTACTCC
ATCCGTCCAAATGTAATGTGCATTTTCCCTATTTGTTATAAAGGCTCTGACAAACAAT----------------------
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--------------------------------------------------------CCTGCAAACAAAAACAATTACTGG
ATCAATACTGCAATCTCATGTATGCGGC-TTTTAATACTA-----------CTACAAGTTTAATGCCATTAATATTATTC
ACATAAATCATATATTAACAAAGTAAATCACAATTAAAACCTTGTTTTAACGAACT--AAAATGCACCTTACATTTTAAA
T---AGAAGGAAGTTACTGAGGTCAGCAACAAAAAG-ATAGAAGAAGGGAGTTACTACATATCTAAAGCGCG--------
-----TAC------------------------------------------------------------------------
-----------------------------------------------------CTCTATTTTTTGCGAGTCCCGTTGTCA
CACACC-ATCAAGAGAAGTGACAAATGGCGTAATTCAAAATCGTAG-GCATCTTCTTTCGAAAACCAAATGGCGATGCTA
TTTTTTCTCTGTGCATCATGATGGGGACTGTACTTGTTCTCAAAGTTT--TAGTGGCATTGAAGCCTTTGGCCTCTTTGG
CTTGTGGACGATTTAAGAGGTTTTCTTCTAAATCCCTATTGTCCCTTTCCATAAGTAGTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-S-----S-------------------S---SS-----S----------S----S--------------S-------S--
--------------SS--------S-------------SS-S------S---S----S----------------------
--------------S-------S------------SS--------SSS-------S------------------------
-----S--SS-----------S--------------SS------------SS--------------------S---S---
--S-------------------S---SS---S------------S--------------S-------------------S
--S---------S----SS---S------SS-S--------S---------SS----SS-S-------SSS---------
S-------------------S----------S--S------S------S-----------S-------------------
-------S----SS-------S----S------S---S----------S-------------------------------
--S-----S--------------------------------SS---------------S------------S----S---
-------------------S-S----------------S------S------------------------SS----S---
-----------------------------------------S----------S------------------S--------
----------------S---------------------------------------------------------------
-----------------------------S-------S------------------------------------------
-------S---------------SSSS---------------------S---------S----------------S----
-S---------------------------SS--S----------------------S------------S----------
S---------S---------------------------------------------------------------------
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--------------------------------S-------------------S---------------------------
------------S-----------------S-------------------------------------------------
----------------------------S----------------------------------S----------------
-----------S--------------------------------------------S--S--------------------
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----------------------S------------------------------S--------------------------
S-----------------------------------------SSS-----------------------------------
------------------------S---------------------------------S---------------------
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------------------------------------------S-------------------------------------
-----------------------S------S-------SSSSSSS-----------------S-----------------
--------------SSS------------------------S--------SS-------S-S---S--------------
-S-SSS--------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
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--S----S------------------SSS-----------SSSSSSSSSSS--------S-----S--------------
S----------------------------S-S--S------------------SSSSS---------------S---S--
-SSS----------------S---------------S------------------------------SS--S-------S
----SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------S------SSS-----
------S--------------SS--S--------------SSS---------S--S---S-S--S----------S----
--------------S--------------------------------SSS------------------------------
---------------------------------S----S---------------------
>forward_762
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----------------------TCTTGTTGCAAAGCACTCGC--------------------------------------
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>reverse_2960
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-------------------------------------------------------------------------------C
TTGTACTCCCTCCGTCCCA-------------------------------------------------------------
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