Multiple sequence alignment - TraesCS3B01G202000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G202000 chr3B 100.000 2237 0 0 1 2237 236152818 236150582 0.000000e+00 4132.0
1 TraesCS3B01G202000 chr3B 76.654 257 52 6 1 250 237136080 237136335 3.880000e-28 135.0
2 TraesCS3B01G202000 chr3A 92.337 1592 88 16 447 2014 168832190 168833771 0.000000e+00 2233.0
3 TraesCS3B01G202000 chr3A 85.897 78 10 1 173 250 547400739 547400815 5.120000e-12 82.4
4 TraesCS3B01G202000 chr3D 95.098 1020 44 4 458 1475 159435775 159434760 0.000000e+00 1602.0
5 TraesCS3B01G202000 chr3D 85.502 607 60 18 1431 2017 159434762 159434164 1.900000e-170 608.0
6 TraesCS3B01G202000 chrUn 98.655 223 3 0 2015 2237 441527007 441527229 1.610000e-106 396.0
7 TraesCS3B01G202000 chr6B 98.222 225 4 0 2013 2237 140674912 140675136 5.790000e-106 394.0
8 TraesCS3B01G202000 chr6B 98.649 222 3 0 2016 2237 237138444 237138665 5.790000e-106 394.0
9 TraesCS3B01G202000 chr6B 98.206 223 4 0 2015 2237 378206014 378206236 7.490000e-105 390.0
10 TraesCS3B01G202000 chr6B 98.206 223 4 0 2015 2237 427030828 427030606 7.490000e-105 390.0
11 TraesCS3B01G202000 chr4B 98.649 222 3 0 2016 2237 217743818 217744039 5.790000e-106 394.0
12 TraesCS3B01G202000 chr1A 97.034 236 3 4 2005 2237 396451391 396451625 5.790000e-106 394.0
13 TraesCS3B01G202000 chr7A 97.391 230 4 2 2010 2237 63365838 63366067 7.490000e-105 390.0
14 TraesCS3B01G202000 chr6A 97.368 228 6 0 2010 2237 611837866 611837639 2.690000e-104 388.0
15 TraesCS3B01G202000 chr6A 76.437 174 28 12 84 250 14098199 14098032 5.120000e-12 82.4
16 TraesCS3B01G202000 chr2A 82.397 267 29 5 1 250 190313750 190314015 1.350000e-52 217.0
17 TraesCS3B01G202000 chr7D 81.273 267 33 8 1 250 453288806 453288540 1.350000e-47 200.0
18 TraesCS3B01G202000 chr7D 79.848 263 28 7 1 239 406521872 406522133 3.820000e-38 169.0
19 TraesCS3B01G202000 chr7B 80.224 268 35 6 1 250 477430305 477430038 3.790000e-43 185.0
20 TraesCS3B01G202000 chr1B 80.469 256 38 8 3 250 663041886 663042137 3.790000e-43 185.0
21 TraesCS3B01G202000 chr5A 83.254 209 26 5 35 235 575172572 575172365 1.360000e-42 183.0
22 TraesCS3B01G202000 chr2D 79.926 269 33 9 1 250 158245235 158245501 6.350000e-41 178.0
23 TraesCS3B01G202000 chr2D 81.690 213 29 4 35 239 186966210 186966420 3.820000e-38 169.0
24 TraesCS3B01G202000 chr2B 84.783 138 18 3 12 149 729057107 729056973 3.880000e-28 135.0
25 TraesCS3B01G202000 chr2B 77.215 158 29 6 1 158 656978961 656978811 3.960000e-13 86.1
26 TraesCS3B01G202000 chr2B 97.561 41 1 0 3 43 656991989 656991949 1.110000e-08 71.3
27 TraesCS3B01G202000 chr2B 95.349 43 2 0 1 43 656979128 656979086 3.990000e-08 69.4
28 TraesCS3B01G202000 chr1D 89.041 73 7 1 178 250 100453382 100453311 3.060000e-14 89.8
29 TraesCS3B01G202000 chr1D 87.179 78 9 1 173 250 469097852 469097928 1.100000e-13 87.9
30 TraesCS3B01G202000 chr1D 87.179 78 9 1 173 250 469098471 469098547 1.100000e-13 87.9
31 TraesCS3B01G202000 chr5D 84.615 78 11 1 173 250 400267297 400267221 2.380000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G202000 chr3B 236150582 236152818 2236 True 4132 4132 100.000 1 2237 1 chr3B.!!$R1 2236
1 TraesCS3B01G202000 chr3A 168832190 168833771 1581 False 2233 2233 92.337 447 2014 1 chr3A.!!$F1 1567
2 TraesCS3B01G202000 chr3D 159434164 159435775 1611 True 1105 1602 90.300 458 2017 2 chr3D.!!$R1 1559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 426 0.179067 GGGGATATGCCGACGTCAAA 60.179 55.0 17.16 0.0 37.63 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 1881 0.033109 GGGCTTTTAGATGGGCTGGT 60.033 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.899239 GAGGCGGCGGAGGTGATG 62.899 72.222 9.78 0.00 0.00 3.07
34 35 4.873129 CGGAGGTGATGCCGGACG 62.873 72.222 5.05 0.00 43.67 4.79
35 36 3.458163 GGAGGTGATGCCGGACGA 61.458 66.667 5.05 0.00 43.70 4.20
36 37 2.105128 GAGGTGATGCCGGACGAG 59.895 66.667 5.05 0.00 43.70 4.18
37 38 3.432051 GAGGTGATGCCGGACGAGG 62.432 68.421 5.05 0.00 43.70 4.63
64 65 4.488136 TTGCGGCATCGAGGGCAT 62.488 61.111 23.63 0.00 39.00 4.40
65 66 4.916293 TGCGGCATCGAGGGCATC 62.916 66.667 23.63 14.28 39.00 3.91
73 74 2.280389 CGAGGGCATCGTCCATGG 60.280 66.667 14.15 4.97 46.62 3.66
78 79 3.643978 GCATCGTCCATGGCGAGC 61.644 66.667 27.05 24.67 41.83 5.03
79 80 2.202919 CATCGTCCATGGCGAGCA 60.203 61.111 27.05 12.12 41.83 4.26
80 81 2.107750 ATCGTCCATGGCGAGCAG 59.892 61.111 27.05 8.79 41.83 4.24
108 109 4.176752 GAGCGGGCGGGAGGATTT 62.177 66.667 0.00 0.00 0.00 2.17
109 110 3.699134 GAGCGGGCGGGAGGATTTT 62.699 63.158 0.00 0.00 0.00 1.82
110 111 2.754254 GCGGGCGGGAGGATTTTT 60.754 61.111 0.00 0.00 0.00 1.94
111 112 3.063743 GCGGGCGGGAGGATTTTTG 62.064 63.158 0.00 0.00 0.00 2.44
112 113 1.377987 CGGGCGGGAGGATTTTTGA 60.378 57.895 0.00 0.00 0.00 2.69
113 114 0.963355 CGGGCGGGAGGATTTTTGAA 60.963 55.000 0.00 0.00 0.00 2.69
114 115 1.262417 GGGCGGGAGGATTTTTGAAA 58.738 50.000 0.00 0.00 0.00 2.69
115 116 1.621317 GGGCGGGAGGATTTTTGAAAA 59.379 47.619 0.00 0.00 0.00 2.29
116 117 2.353704 GGGCGGGAGGATTTTTGAAAAG 60.354 50.000 0.00 0.00 0.00 2.27
117 118 2.353704 GGCGGGAGGATTTTTGAAAAGG 60.354 50.000 0.00 0.00 0.00 3.11
118 119 2.299013 GCGGGAGGATTTTTGAAAAGGT 59.701 45.455 0.00 0.00 0.00 3.50
119 120 3.860754 GCGGGAGGATTTTTGAAAAGGTG 60.861 47.826 0.00 0.00 0.00 4.00
120 121 3.320826 CGGGAGGATTTTTGAAAAGGTGT 59.679 43.478 0.00 0.00 0.00 4.16
121 122 4.521256 CGGGAGGATTTTTGAAAAGGTGTA 59.479 41.667 0.00 0.00 0.00 2.90
122 123 5.335661 CGGGAGGATTTTTGAAAAGGTGTAG 60.336 44.000 0.00 0.00 0.00 2.74
123 124 5.047306 GGGAGGATTTTTGAAAAGGTGTAGG 60.047 44.000 0.00 0.00 0.00 3.18
124 125 5.773176 GGAGGATTTTTGAAAAGGTGTAGGA 59.227 40.000 0.00 0.00 0.00 2.94
125 126 6.266786 GGAGGATTTTTGAAAAGGTGTAGGAA 59.733 38.462 0.00 0.00 0.00 3.36
126 127 7.201965 GGAGGATTTTTGAAAAGGTGTAGGAAA 60.202 37.037 0.00 0.00 0.00 3.13
127 128 8.084985 AGGATTTTTGAAAAGGTGTAGGAAAA 57.915 30.769 0.00 0.00 0.00 2.29
128 129 8.713971 AGGATTTTTGAAAAGGTGTAGGAAAAT 58.286 29.630 0.00 0.00 0.00 1.82
129 130 8.773645 GGATTTTTGAAAAGGTGTAGGAAAATG 58.226 33.333 0.00 0.00 0.00 2.32
130 131 8.675705 ATTTTTGAAAAGGTGTAGGAAAATGG 57.324 30.769 0.00 0.00 0.00 3.16
131 132 6.800072 TTTGAAAAGGTGTAGGAAAATGGT 57.200 33.333 0.00 0.00 0.00 3.55
132 133 5.782893 TGAAAAGGTGTAGGAAAATGGTG 57.217 39.130 0.00 0.00 0.00 4.17
133 134 4.586841 TGAAAAGGTGTAGGAAAATGGTGG 59.413 41.667 0.00 0.00 0.00 4.61
134 135 4.463050 AAAGGTGTAGGAAAATGGTGGA 57.537 40.909 0.00 0.00 0.00 4.02
135 136 4.675063 AAGGTGTAGGAAAATGGTGGAT 57.325 40.909 0.00 0.00 0.00 3.41
136 137 3.968265 AGGTGTAGGAAAATGGTGGATG 58.032 45.455 0.00 0.00 0.00 3.51
137 138 2.427095 GGTGTAGGAAAATGGTGGATGC 59.573 50.000 0.00 0.00 0.00 3.91
138 139 3.356290 GTGTAGGAAAATGGTGGATGCT 58.644 45.455 0.00 0.00 0.00 3.79
139 140 3.763897 GTGTAGGAAAATGGTGGATGCTT 59.236 43.478 0.00 0.00 0.00 3.91
140 141 4.220602 GTGTAGGAAAATGGTGGATGCTTT 59.779 41.667 0.00 0.00 0.00 3.51
141 142 3.967332 AGGAAAATGGTGGATGCTTTG 57.033 42.857 0.00 0.00 0.00 2.77
142 143 2.027837 AGGAAAATGGTGGATGCTTTGC 60.028 45.455 0.00 0.00 0.00 3.68
143 144 2.349590 GAAAATGGTGGATGCTTTGCC 58.650 47.619 0.00 0.00 0.00 4.52
144 145 1.350071 AAATGGTGGATGCTTTGCCA 58.650 45.000 0.00 0.00 0.00 4.92
147 148 2.568090 GTGGATGCTTTGCCACCG 59.432 61.111 0.00 0.00 46.91 4.94
148 149 1.971167 GTGGATGCTTTGCCACCGA 60.971 57.895 0.00 0.00 46.91 4.69
149 150 1.971167 TGGATGCTTTGCCACCGAC 60.971 57.895 0.00 0.00 0.00 4.79
150 151 1.675641 GGATGCTTTGCCACCGACT 60.676 57.895 0.00 0.00 0.00 4.18
151 152 0.392461 GGATGCTTTGCCACCGACTA 60.392 55.000 0.00 0.00 0.00 2.59
152 153 1.009829 GATGCTTTGCCACCGACTAG 58.990 55.000 0.00 0.00 0.00 2.57
153 154 1.026718 ATGCTTTGCCACCGACTAGC 61.027 55.000 0.00 0.00 0.00 3.42
154 155 2.740714 GCTTTGCCACCGACTAGCG 61.741 63.158 0.00 0.00 40.47 4.26
166 167 3.265070 CGACTAGCGGGTATAGTTGAC 57.735 52.381 0.00 0.00 36.96 3.18
167 168 2.349249 CGACTAGCGGGTATAGTTGACG 60.349 54.545 0.00 0.00 36.96 4.35
170 171 3.609258 CGGGTATAGTTGACGCGC 58.391 61.111 5.73 0.00 44.56 6.86
171 172 2.290789 CGGGTATAGTTGACGCGCG 61.291 63.158 30.96 30.96 44.56 6.86
172 173 1.947642 GGGTATAGTTGACGCGCGG 60.948 63.158 35.22 16.31 0.00 6.46
173 174 2.583164 GGTATAGTTGACGCGCGGC 61.583 63.158 35.22 34.04 0.00 6.53
201 202 4.400109 GTCTCGTGTCCGCGCTGA 62.400 66.667 5.56 0.00 0.00 4.26
202 203 4.400109 TCTCGTGTCCGCGCTGAC 62.400 66.667 23.20 23.20 35.77 3.51
213 214 2.787249 CGCTGACGCAAATGAGGG 59.213 61.111 0.00 0.00 35.30 4.30
214 215 2.034879 CGCTGACGCAAATGAGGGT 61.035 57.895 0.00 0.00 37.38 4.34
220 221 3.575965 GACGCAAATGAGGGTCAAAAT 57.424 42.857 9.18 0.00 46.92 1.82
221 222 3.913089 GACGCAAATGAGGGTCAAAATT 58.087 40.909 9.18 0.00 46.92 1.82
222 223 3.652274 ACGCAAATGAGGGTCAAAATTG 58.348 40.909 0.00 0.00 0.00 2.32
223 224 2.995258 CGCAAATGAGGGTCAAAATTGG 59.005 45.455 0.00 0.00 0.00 3.16
224 225 3.337358 GCAAATGAGGGTCAAAATTGGG 58.663 45.455 0.00 0.00 0.00 4.12
225 226 3.337358 CAAATGAGGGTCAAAATTGGGC 58.663 45.455 0.00 0.00 0.00 5.36
226 227 1.571955 ATGAGGGTCAAAATTGGGCC 58.428 50.000 0.00 0.00 0.00 5.80
227 228 0.897863 TGAGGGTCAAAATTGGGCCG 60.898 55.000 0.00 0.00 0.00 6.13
228 229 0.610785 GAGGGTCAAAATTGGGCCGA 60.611 55.000 0.00 0.00 0.00 5.54
229 230 0.611896 AGGGTCAAAATTGGGCCGAG 60.612 55.000 0.00 0.00 0.00 4.63
230 231 0.610785 GGGTCAAAATTGGGCCGAGA 60.611 55.000 0.00 0.00 0.00 4.04
231 232 1.253100 GGTCAAAATTGGGCCGAGAA 58.747 50.000 0.00 0.00 0.00 2.87
232 233 1.824852 GGTCAAAATTGGGCCGAGAAT 59.175 47.619 0.00 0.00 0.00 2.40
233 234 2.417243 GGTCAAAATTGGGCCGAGAATG 60.417 50.000 0.00 0.00 0.00 2.67
234 235 1.824230 TCAAAATTGGGCCGAGAATGG 59.176 47.619 0.00 0.00 0.00 3.16
235 236 1.824230 CAAAATTGGGCCGAGAATGGA 59.176 47.619 0.00 0.00 0.00 3.41
236 237 2.431782 CAAAATTGGGCCGAGAATGGAT 59.568 45.455 0.00 0.00 0.00 3.41
237 238 1.986882 AATTGGGCCGAGAATGGATC 58.013 50.000 0.00 0.00 0.00 3.36
238 239 0.250467 ATTGGGCCGAGAATGGATCG 60.250 55.000 0.00 0.00 39.86 3.69
244 245 2.892305 CGAGAATGGATCGGCAGAC 58.108 57.895 0.00 0.00 36.54 3.51
245 246 0.936764 CGAGAATGGATCGGCAGACG 60.937 60.000 0.00 0.00 46.11 4.18
246 247 0.598680 GAGAATGGATCGGCAGACGG 60.599 60.000 0.00 0.00 44.45 4.79
247 248 1.043116 AGAATGGATCGGCAGACGGA 61.043 55.000 0.00 0.00 44.45 4.69
248 249 0.876342 GAATGGATCGGCAGACGGAC 60.876 60.000 0.00 0.00 44.45 4.79
270 271 4.337060 GTCCGCGGCAACCCAAAC 62.337 66.667 23.51 6.98 0.00 2.93
271 272 4.877619 TCCGCGGCAACCCAAACA 62.878 61.111 23.51 0.00 0.00 2.83
272 273 4.341502 CCGCGGCAACCCAAACAG 62.342 66.667 14.67 0.00 0.00 3.16
273 274 3.283684 CGCGGCAACCCAAACAGA 61.284 61.111 0.00 0.00 0.00 3.41
274 275 2.335011 GCGGCAACCCAAACAGAC 59.665 61.111 0.00 0.00 0.00 3.51
275 276 2.637025 CGGCAACCCAAACAGACG 59.363 61.111 0.00 0.00 0.00 4.18
276 277 2.903547 CGGCAACCCAAACAGACGG 61.904 63.158 0.00 0.00 0.00 4.79
292 293 3.818787 GGGCGCGGACGAACTCTA 61.819 66.667 8.83 0.00 43.93 2.43
293 294 2.180017 GGCGCGGACGAACTCTAA 59.820 61.111 8.83 0.00 43.93 2.10
294 295 2.157073 GGCGCGGACGAACTCTAAC 61.157 63.158 8.83 0.00 43.93 2.34
295 296 2.157073 GCGCGGACGAACTCTAACC 61.157 63.158 8.83 0.00 43.93 2.85
296 297 1.866496 CGCGGACGAACTCTAACCG 60.866 63.158 0.00 0.00 43.93 4.44
297 298 1.211190 GCGGACGAACTCTAACCGT 59.789 57.895 0.00 0.00 44.48 4.83
301 302 2.935481 GACGAACTCTAACCGTCCAT 57.065 50.000 0.00 0.00 44.67 3.41
302 303 2.527100 GACGAACTCTAACCGTCCATG 58.473 52.381 0.00 0.00 44.67 3.66
303 304 1.891150 ACGAACTCTAACCGTCCATGT 59.109 47.619 0.00 0.00 29.82 3.21
304 305 3.084039 ACGAACTCTAACCGTCCATGTA 58.916 45.455 0.00 0.00 29.82 2.29
305 306 3.119708 ACGAACTCTAACCGTCCATGTAC 60.120 47.826 0.00 0.00 29.82 2.90
306 307 3.432782 GAACTCTAACCGTCCATGTACG 58.567 50.000 3.50 3.50 42.49 3.67
307 308 2.440409 ACTCTAACCGTCCATGTACGT 58.560 47.619 10.08 0.00 41.27 3.57
308 309 2.421424 ACTCTAACCGTCCATGTACGTC 59.579 50.000 10.08 0.00 41.27 4.34
309 310 1.745087 TCTAACCGTCCATGTACGTCC 59.255 52.381 10.08 0.00 41.27 4.79
310 311 0.817013 TAACCGTCCATGTACGTCCC 59.183 55.000 10.08 0.00 41.27 4.46
311 312 1.891722 AACCGTCCATGTACGTCCCC 61.892 60.000 10.08 0.00 41.27 4.81
312 313 2.103538 CGTCCATGTACGTCCCCG 59.896 66.667 2.18 0.00 38.07 5.73
334 335 4.488126 TTGCAAACAAGGAAAGAGATCG 57.512 40.909 0.00 0.00 0.00 3.69
335 336 2.226437 TGCAAACAAGGAAAGAGATCGC 59.774 45.455 0.00 0.00 0.00 4.58
336 337 2.726066 GCAAACAAGGAAAGAGATCGCG 60.726 50.000 0.00 0.00 0.00 5.87
337 338 1.726853 AACAAGGAAAGAGATCGCGG 58.273 50.000 6.13 0.00 0.00 6.46
338 339 0.741221 ACAAGGAAAGAGATCGCGGC 60.741 55.000 6.13 0.00 0.00 6.53
339 340 1.519455 AAGGAAAGAGATCGCGGCG 60.519 57.895 17.70 17.70 0.00 6.46
340 341 2.202756 GGAAAGAGATCGCGGCGT 60.203 61.111 22.90 9.76 0.00 5.68
341 342 1.065273 GGAAAGAGATCGCGGCGTA 59.935 57.895 22.90 9.59 0.00 4.42
342 343 0.318784 GGAAAGAGATCGCGGCGTAT 60.319 55.000 22.90 14.07 0.00 3.06
343 344 1.053811 GAAAGAGATCGCGGCGTATC 58.946 55.000 22.90 21.03 0.00 2.24
344 345 0.660595 AAAGAGATCGCGGCGTATCG 60.661 55.000 22.90 3.52 0.00 2.92
354 355 4.946411 GCGTATCGCGAGGAAGAT 57.054 55.556 16.66 0.00 44.55 2.40
356 357 2.327081 GCGTATCGCGAGGAAGATAA 57.673 50.000 16.66 0.00 44.55 1.75
357 358 2.243407 GCGTATCGCGAGGAAGATAAG 58.757 52.381 16.66 4.31 44.55 1.73
358 359 2.095869 GCGTATCGCGAGGAAGATAAGA 60.096 50.000 16.66 0.00 44.55 2.10
359 360 3.738399 CGTATCGCGAGGAAGATAAGAG 58.262 50.000 16.66 0.00 44.77 2.85
360 361 3.432592 CGTATCGCGAGGAAGATAAGAGA 59.567 47.826 16.66 0.00 44.77 3.10
361 362 4.093703 CGTATCGCGAGGAAGATAAGAGAT 59.906 45.833 16.66 0.00 44.77 2.75
362 363 3.906014 TCGCGAGGAAGATAAGAGATG 57.094 47.619 3.71 0.00 0.00 2.90
363 364 3.477530 TCGCGAGGAAGATAAGAGATGA 58.522 45.455 3.71 0.00 0.00 2.92
364 365 3.251245 TCGCGAGGAAGATAAGAGATGAC 59.749 47.826 3.71 0.00 0.00 3.06
365 366 3.560503 GCGAGGAAGATAAGAGATGACG 58.439 50.000 0.00 0.00 0.00 4.35
366 367 3.610585 GCGAGGAAGATAAGAGATGACGG 60.611 52.174 0.00 0.00 0.00 4.79
367 368 3.610585 CGAGGAAGATAAGAGATGACGGC 60.611 52.174 0.00 0.00 0.00 5.68
368 369 3.571590 AGGAAGATAAGAGATGACGGCT 58.428 45.455 0.00 0.00 0.00 5.52
369 370 3.572255 AGGAAGATAAGAGATGACGGCTC 59.428 47.826 0.00 0.00 0.00 4.70
370 371 3.305744 GGAAGATAAGAGATGACGGCTCC 60.306 52.174 0.00 0.00 32.82 4.70
371 372 3.237268 AGATAAGAGATGACGGCTCCT 57.763 47.619 0.00 0.00 32.82 3.69
372 373 3.571590 AGATAAGAGATGACGGCTCCTT 58.428 45.455 0.00 0.00 32.82 3.36
373 374 3.964031 AGATAAGAGATGACGGCTCCTTT 59.036 43.478 0.00 0.00 32.82 3.11
374 375 2.682155 AAGAGATGACGGCTCCTTTC 57.318 50.000 0.00 0.00 32.82 2.62
375 376 0.827368 AGAGATGACGGCTCCTTTCC 59.173 55.000 0.00 0.00 32.82 3.13
376 377 0.537188 GAGATGACGGCTCCTTTCCA 59.463 55.000 0.00 0.00 0.00 3.53
377 378 0.539051 AGATGACGGCTCCTTTCCAG 59.461 55.000 0.00 0.00 0.00 3.86
378 379 1.078143 ATGACGGCTCCTTTCCAGC 60.078 57.895 0.00 0.00 36.02 4.85
384 385 1.529309 GCTCCTTTCCAGCCCTAGG 59.471 63.158 0.06 0.06 0.00 3.02
406 407 4.465512 GCCCACGCATGCAACGAG 62.466 66.667 19.57 10.62 34.03 4.18
407 408 3.803082 CCCACGCATGCAACGAGG 61.803 66.667 19.57 18.04 40.42 4.63
408 409 3.803082 CCACGCATGCAACGAGGG 61.803 66.667 19.57 14.20 37.58 4.30
409 410 3.803082 CACGCATGCAACGAGGGG 61.803 66.667 19.57 0.50 0.00 4.79
410 411 4.015406 ACGCATGCAACGAGGGGA 62.015 61.111 19.57 0.00 0.00 4.81
411 412 2.514592 CGCATGCAACGAGGGGAT 60.515 61.111 19.57 0.00 0.00 3.85
412 413 1.227527 CGCATGCAACGAGGGGATA 60.228 57.895 19.57 0.00 0.00 2.59
413 414 0.603707 CGCATGCAACGAGGGGATAT 60.604 55.000 19.57 0.00 0.00 1.63
414 415 0.877071 GCATGCAACGAGGGGATATG 59.123 55.000 14.21 0.00 0.00 1.78
415 416 0.877071 CATGCAACGAGGGGATATGC 59.123 55.000 0.00 0.00 37.52 3.14
416 417 0.250901 ATGCAACGAGGGGATATGCC 60.251 55.000 4.31 4.31 36.20 4.40
417 418 1.961277 GCAACGAGGGGATATGCCG 60.961 63.158 7.23 0.00 37.63 5.69
418 419 1.745890 CAACGAGGGGATATGCCGA 59.254 57.895 7.23 0.00 37.63 5.54
419 420 0.600255 CAACGAGGGGATATGCCGAC 60.600 60.000 7.23 2.93 37.63 4.79
420 421 2.083835 AACGAGGGGATATGCCGACG 62.084 60.000 21.77 21.77 37.63 5.12
421 422 2.561956 CGAGGGGATATGCCGACGT 61.562 63.158 17.57 0.00 37.63 4.34
422 423 1.289380 GAGGGGATATGCCGACGTC 59.711 63.158 5.18 5.18 37.63 4.34
423 424 1.456892 AGGGGATATGCCGACGTCA 60.457 57.895 17.16 0.00 37.63 4.35
424 425 1.046472 AGGGGATATGCCGACGTCAA 61.046 55.000 17.16 0.18 37.63 3.18
425 426 0.179067 GGGGATATGCCGACGTCAAA 60.179 55.000 17.16 0.00 37.63 2.69
426 427 1.217882 GGGATATGCCGACGTCAAAG 58.782 55.000 17.16 4.57 37.63 2.77
427 428 1.217882 GGATATGCCGACGTCAAAGG 58.782 55.000 17.16 10.00 0.00 3.11
428 429 1.472728 GGATATGCCGACGTCAAAGGT 60.473 52.381 17.16 0.00 0.00 3.50
429 430 2.277084 GATATGCCGACGTCAAAGGTT 58.723 47.619 17.16 3.95 0.00 3.50
430 431 2.172851 TATGCCGACGTCAAAGGTTT 57.827 45.000 17.16 3.62 0.00 3.27
431 432 2.172851 ATGCCGACGTCAAAGGTTTA 57.827 45.000 17.16 0.91 0.00 2.01
432 433 1.219646 TGCCGACGTCAAAGGTTTAC 58.780 50.000 17.16 0.00 0.00 2.01
433 434 1.219646 GCCGACGTCAAAGGTTTACA 58.780 50.000 17.16 0.00 0.00 2.41
434 435 1.193874 GCCGACGTCAAAGGTTTACAG 59.806 52.381 17.16 0.00 0.00 2.74
435 436 2.476821 CCGACGTCAAAGGTTTACAGT 58.523 47.619 17.16 0.00 0.00 3.55
436 437 2.220133 CCGACGTCAAAGGTTTACAGTG 59.780 50.000 17.16 0.00 0.00 3.66
437 438 2.348218 CGACGTCAAAGGTTTACAGTGC 60.348 50.000 17.16 0.00 0.00 4.40
438 439 2.870411 GACGTCAAAGGTTTACAGTGCT 59.130 45.455 11.55 0.00 0.00 4.40
439 440 3.275999 ACGTCAAAGGTTTACAGTGCTT 58.724 40.909 0.00 0.00 0.00 3.91
440 441 4.444536 ACGTCAAAGGTTTACAGTGCTTA 58.555 39.130 0.00 0.00 0.00 3.09
441 442 4.877251 ACGTCAAAGGTTTACAGTGCTTAA 59.123 37.500 0.00 0.00 0.00 1.85
442 443 5.354792 ACGTCAAAGGTTTACAGTGCTTAAA 59.645 36.000 0.00 0.00 0.00 1.52
443 444 5.679792 CGTCAAAGGTTTACAGTGCTTAAAC 59.320 40.000 7.52 7.52 38.28 2.01
454 455 4.338400 ACAGTGCTTAAACCAGAAGTTTCC 59.662 41.667 0.00 0.00 45.85 3.13
455 456 3.564225 AGTGCTTAAACCAGAAGTTTCCG 59.436 43.478 0.00 0.00 45.85 4.30
472 473 2.512896 GGAGGGCAGGGCATACAG 59.487 66.667 0.00 0.00 0.00 2.74
499 500 1.665679 CGTCCAATGAACGGATGAAGG 59.334 52.381 0.00 0.00 41.36 3.46
512 513 1.989165 GATGAAGGCGCACGATCTATC 59.011 52.381 10.83 0.00 0.00 2.08
513 514 0.744281 TGAAGGCGCACGATCTATCA 59.256 50.000 10.83 1.02 0.00 2.15
514 515 1.136110 TGAAGGCGCACGATCTATCAA 59.864 47.619 10.83 0.00 0.00 2.57
515 516 2.224042 TGAAGGCGCACGATCTATCAAT 60.224 45.455 10.83 0.00 0.00 2.57
516 517 2.071688 AGGCGCACGATCTATCAATC 57.928 50.000 10.83 0.00 0.00 2.67
552 553 1.396996 CCAATCCAATCAACGGACGAC 59.603 52.381 0.00 0.00 34.69 4.34
566 569 3.587403 GGACGACGAATTTGATTAGGC 57.413 47.619 0.00 0.00 0.00 3.93
588 591 3.383546 ACAACAGCATATTTACACGCG 57.616 42.857 3.53 3.53 0.00 6.01
629 632 4.357918 AGTAGAATCTGCACACAAGGTT 57.642 40.909 0.46 0.00 0.00 3.50
918 932 2.104859 CACCTGAGTGCATGGCTCG 61.105 63.158 0.00 0.00 37.14 5.03
1024 1042 3.714001 CCCTCCTGCTGCTGCTGA 61.714 66.667 21.35 14.19 40.01 4.26
1126 1144 0.771127 CCCAAACCCTCTGTTGGAGA 59.229 55.000 4.00 0.00 44.45 3.71
1137 1155 2.711009 TCTGTTGGAGAACAAGGGATGT 59.289 45.455 0.00 0.00 46.82 3.06
1202 1220 4.431131 CTTGCAGTGGCCCCGGAT 62.431 66.667 0.73 0.00 40.13 4.18
1282 1301 3.446442 AATGGAGTGCCTGTCAATCTT 57.554 42.857 0.00 0.00 39.56 2.40
1329 1348 4.575885 TCCAATGTAGTTCTTGCCTACAC 58.424 43.478 2.64 0.00 45.40 2.90
1384 1403 3.391965 TGTTGGTTGATTTCTTGCATGC 58.608 40.909 11.82 11.82 0.00 4.06
1441 1460 7.624549 TCTCACTGCCAATAAAACTCTATCTT 58.375 34.615 0.00 0.00 0.00 2.40
1442 1461 8.758829 TCTCACTGCCAATAAAACTCTATCTTA 58.241 33.333 0.00 0.00 0.00 2.10
1547 1608 4.129380 TCAACATTTCAGACAGGTGACAG 58.871 43.478 0.00 0.00 0.00 3.51
1666 1727 5.630121 AGTATGTTCCCTGTGAATTGTGAA 58.370 37.500 0.00 0.00 34.90 3.18
1807 1877 3.579534 AGTACTCCGATCTGAGCCTAA 57.420 47.619 13.51 0.00 35.72 2.69
1838 1911 2.358898 CCATCTAAAAGCCCATTCACCG 59.641 50.000 0.00 0.00 0.00 4.94
1883 1956 0.462759 GTTAGCCAGGCCAGTAGCTG 60.463 60.000 8.22 0.04 43.05 4.24
1887 1960 2.816958 CAGGCCAGTAGCTGCACG 60.817 66.667 5.01 0.00 43.05 5.34
1905 1978 4.671549 CGCACAAGCACAGCACCG 62.672 66.667 0.00 0.00 42.27 4.94
1907 1980 3.585020 CACAAGCACAGCACCGCA 61.585 61.111 0.00 0.00 0.00 5.69
1941 2019 3.402681 CCACACCGCTGGAGGGAT 61.403 66.667 1.50 0.00 32.30 3.85
1947 2025 2.443394 CCGCTGGAGGGATAAGCCA 61.443 63.158 0.00 0.00 38.95 4.75
2025 2106 7.830201 AGTCTACTTTATGATATACTCCCTCCG 59.170 40.741 0.00 0.00 0.00 4.63
2026 2107 7.828223 GTCTACTTTATGATATACTCCCTCCGA 59.172 40.741 0.00 0.00 0.00 4.55
2027 2108 8.558312 TCTACTTTATGATATACTCCCTCCGAT 58.442 37.037 0.00 0.00 0.00 4.18
2028 2109 7.648039 ACTTTATGATATACTCCCTCCGATC 57.352 40.000 0.00 0.00 0.00 3.69
2029 2110 6.608002 ACTTTATGATATACTCCCTCCGATCC 59.392 42.308 0.00 0.00 0.00 3.36
2030 2111 4.890499 ATGATATACTCCCTCCGATCCT 57.110 45.455 0.00 0.00 0.00 3.24
2031 2112 4.676799 TGATATACTCCCTCCGATCCTT 57.323 45.455 0.00 0.00 0.00 3.36
2032 2113 5.011982 TGATATACTCCCTCCGATCCTTT 57.988 43.478 0.00 0.00 0.00 3.11
2033 2114 5.403512 TGATATACTCCCTCCGATCCTTTT 58.596 41.667 0.00 0.00 0.00 2.27
2034 2115 5.844516 TGATATACTCCCTCCGATCCTTTTT 59.155 40.000 0.00 0.00 0.00 1.94
2035 2116 7.014449 TGATATACTCCCTCCGATCCTTTTTA 58.986 38.462 0.00 0.00 0.00 1.52
2036 2117 3.908643 ACTCCCTCCGATCCTTTTTAC 57.091 47.619 0.00 0.00 0.00 2.01
2037 2118 3.451890 ACTCCCTCCGATCCTTTTTACT 58.548 45.455 0.00 0.00 0.00 2.24
2038 2119 3.451540 ACTCCCTCCGATCCTTTTTACTC 59.548 47.826 0.00 0.00 0.00 2.59
2039 2120 3.707102 CTCCCTCCGATCCTTTTTACTCT 59.293 47.826 0.00 0.00 0.00 3.24
2040 2121 3.451178 TCCCTCCGATCCTTTTTACTCTG 59.549 47.826 0.00 0.00 0.00 3.35
2041 2122 3.198872 CCTCCGATCCTTTTTACTCTGC 58.801 50.000 0.00 0.00 0.00 4.26
2042 2123 3.369471 CCTCCGATCCTTTTTACTCTGCA 60.369 47.826 0.00 0.00 0.00 4.41
2043 2124 4.446371 CTCCGATCCTTTTTACTCTGCAT 58.554 43.478 0.00 0.00 0.00 3.96
2044 2125 5.453339 CCTCCGATCCTTTTTACTCTGCATA 60.453 44.000 0.00 0.00 0.00 3.14
2045 2126 6.174720 TCCGATCCTTTTTACTCTGCATAT 57.825 37.500 0.00 0.00 0.00 1.78
2046 2127 6.591935 TCCGATCCTTTTTACTCTGCATATT 58.408 36.000 0.00 0.00 0.00 1.28
2047 2128 7.732025 TCCGATCCTTTTTACTCTGCATATTA 58.268 34.615 0.00 0.00 0.00 0.98
2048 2129 7.872993 TCCGATCCTTTTTACTCTGCATATTAG 59.127 37.037 0.00 0.00 0.00 1.73
2049 2130 7.118390 CCGATCCTTTTTACTCTGCATATTAGG 59.882 40.741 0.00 0.00 0.00 2.69
2050 2131 7.657761 CGATCCTTTTTACTCTGCATATTAGGT 59.342 37.037 0.00 0.00 0.00 3.08
2051 2132 9.343539 GATCCTTTTTACTCTGCATATTAGGTT 57.656 33.333 0.00 0.00 0.00 3.50
2052 2133 9.700831 ATCCTTTTTACTCTGCATATTAGGTTT 57.299 29.630 0.00 0.00 0.00 3.27
2053 2134 8.956426 TCCTTTTTACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
2054 2135 8.739972 CCTTTTTACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
2055 2136 9.774742 CTTTTTACTCTGCATATTAGGTTTGTC 57.225 33.333 0.00 0.00 0.00 3.18
2056 2137 9.515226 TTTTTACTCTGCATATTAGGTTTGTCT 57.485 29.630 0.00 0.00 0.00 3.41
2057 2138 8.492673 TTTACTCTGCATATTAGGTTTGTCTG 57.507 34.615 0.00 0.00 0.00 3.51
2058 2139 6.299805 ACTCTGCATATTAGGTTTGTCTGA 57.700 37.500 0.00 0.00 0.00 3.27
2059 2140 6.711277 ACTCTGCATATTAGGTTTGTCTGAA 58.289 36.000 0.00 0.00 0.00 3.02
2060 2141 6.820656 ACTCTGCATATTAGGTTTGTCTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
2061 2142 6.711277 TCTGCATATTAGGTTTGTCTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
2062 2143 6.818644 TCTGCATATTAGGTTTGTCTGAAGTC 59.181 38.462 0.00 0.00 0.00 3.01
2063 2144 6.472016 TGCATATTAGGTTTGTCTGAAGTCA 58.528 36.000 0.00 0.00 0.00 3.41
2064 2145 6.939730 TGCATATTAGGTTTGTCTGAAGTCAA 59.060 34.615 0.00 0.00 0.00 3.18
2065 2146 7.611467 TGCATATTAGGTTTGTCTGAAGTCAAT 59.389 33.333 0.00 0.00 0.00 2.57
2066 2147 8.125448 GCATATTAGGTTTGTCTGAAGTCAATC 58.875 37.037 0.00 0.00 0.00 2.67
2067 2148 9.388506 CATATTAGGTTTGTCTGAAGTCAATCT 57.611 33.333 0.00 0.00 0.00 2.40
2068 2149 7.913674 ATTAGGTTTGTCTGAAGTCAATCTC 57.086 36.000 0.00 0.00 0.00 2.75
2069 2150 5.296151 AGGTTTGTCTGAAGTCAATCTCA 57.704 39.130 0.00 0.00 0.00 3.27
2070 2151 5.874093 AGGTTTGTCTGAAGTCAATCTCAT 58.126 37.500 0.00 0.00 0.00 2.90
2071 2152 5.936956 AGGTTTGTCTGAAGTCAATCTCATC 59.063 40.000 0.00 0.00 0.00 2.92
2072 2153 5.123027 GGTTTGTCTGAAGTCAATCTCATCC 59.877 44.000 0.00 0.00 0.00 3.51
2073 2154 5.488262 TTGTCTGAAGTCAATCTCATCCA 57.512 39.130 0.00 0.00 0.00 3.41
2074 2155 5.488262 TGTCTGAAGTCAATCTCATCCAA 57.512 39.130 0.00 0.00 0.00 3.53
2075 2156 5.240891 TGTCTGAAGTCAATCTCATCCAAC 58.759 41.667 0.00 0.00 0.00 3.77
2076 2157 5.012458 TGTCTGAAGTCAATCTCATCCAACT 59.988 40.000 0.00 0.00 0.00 3.16
2077 2158 5.936956 GTCTGAAGTCAATCTCATCCAACTT 59.063 40.000 0.00 0.00 0.00 2.66
2078 2159 6.429385 GTCTGAAGTCAATCTCATCCAACTTT 59.571 38.462 0.00 0.00 0.00 2.66
2079 2160 6.429078 TCTGAAGTCAATCTCATCCAACTTTG 59.571 38.462 0.00 0.00 0.00 2.77
2080 2161 6.298361 TGAAGTCAATCTCATCCAACTTTGA 58.702 36.000 0.00 0.00 0.00 2.69
2081 2162 6.205464 TGAAGTCAATCTCATCCAACTTTGAC 59.795 38.462 5.67 5.67 41.88 3.18
2082 2163 5.006386 AGTCAATCTCATCCAACTTTGACC 58.994 41.667 9.31 0.00 42.29 4.02
2083 2164 4.761739 GTCAATCTCATCCAACTTTGACCA 59.238 41.667 0.00 0.00 37.86 4.02
2084 2165 5.241506 GTCAATCTCATCCAACTTTGACCAA 59.758 40.000 0.00 0.00 37.86 3.67
2085 2166 5.474532 TCAATCTCATCCAACTTTGACCAAG 59.525 40.000 0.00 0.00 38.64 3.61
2126 2207 8.810652 ATTGACATTTACATAACAACACCAAC 57.189 30.769 0.00 0.00 0.00 3.77
2127 2208 7.334844 TGACATTTACATAACAACACCAACA 57.665 32.000 0.00 0.00 0.00 3.33
2128 2209 7.946207 TGACATTTACATAACAACACCAACAT 58.054 30.769 0.00 0.00 0.00 2.71
2129 2210 8.079203 TGACATTTACATAACAACACCAACATC 58.921 33.333 0.00 0.00 0.00 3.06
2130 2211 7.946207 ACATTTACATAACAACACCAACATCA 58.054 30.769 0.00 0.00 0.00 3.07
2131 2212 8.584157 ACATTTACATAACAACACCAACATCAT 58.416 29.630 0.00 0.00 0.00 2.45
2132 2213 9.421806 CATTTACATAACAACACCAACATCATT 57.578 29.630 0.00 0.00 0.00 2.57
2135 2216 7.994425 ACATAACAACACCAACATCATTAGA 57.006 32.000 0.00 0.00 0.00 2.10
2136 2217 8.579850 ACATAACAACACCAACATCATTAGAT 57.420 30.769 0.00 0.00 33.87 1.98
2137 2218 9.023962 ACATAACAACACCAACATCATTAGATT 57.976 29.630 0.00 0.00 30.20 2.40
2138 2219 9.507280 CATAACAACACCAACATCATTAGATTC 57.493 33.333 0.00 0.00 30.20 2.52
2139 2220 7.523293 AACAACACCAACATCATTAGATTCA 57.477 32.000 0.00 0.00 30.20 2.57
2140 2221 7.707624 ACAACACCAACATCATTAGATTCAT 57.292 32.000 0.00 0.00 30.20 2.57
2141 2222 7.765307 ACAACACCAACATCATTAGATTCATC 58.235 34.615 0.00 0.00 30.20 2.92
2142 2223 7.613022 ACAACACCAACATCATTAGATTCATCT 59.387 33.333 0.00 0.00 40.86 2.90
2143 2224 7.798596 ACACCAACATCATTAGATTCATCTC 57.201 36.000 0.00 0.00 38.32 2.75
2144 2225 6.481313 ACACCAACATCATTAGATTCATCTCG 59.519 38.462 0.00 0.00 38.32 4.04
2145 2226 5.994054 ACCAACATCATTAGATTCATCTCGG 59.006 40.000 0.00 0.00 38.32 4.63
2146 2227 6.183361 ACCAACATCATTAGATTCATCTCGGA 60.183 38.462 0.00 0.00 38.32 4.55
2147 2228 6.707608 CCAACATCATTAGATTCATCTCGGAA 59.292 38.462 0.00 0.00 38.32 4.30
2148 2229 7.389884 CCAACATCATTAGATTCATCTCGGAAT 59.610 37.037 0.00 0.00 40.10 3.01
2149 2230 9.428097 CAACATCATTAGATTCATCTCGGAATA 57.572 33.333 0.00 0.00 37.61 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.899239 CATCACCTCCGCCGCCTC 62.899 72.222 0.00 0.00 0.00 4.70
17 18 4.873129 CGTCCGGCATCACCTCCG 62.873 72.222 0.00 0.00 44.89 4.63
18 19 3.432051 CTCGTCCGGCATCACCTCC 62.432 68.421 0.00 0.00 35.61 4.30
19 20 2.105128 CTCGTCCGGCATCACCTC 59.895 66.667 0.00 0.00 35.61 3.85
20 21 3.461773 CCTCGTCCGGCATCACCT 61.462 66.667 0.00 0.00 35.61 4.00
47 48 4.488136 ATGCCCTCGATGCCGCAA 62.488 61.111 0.00 0.00 34.38 4.85
48 49 4.916293 GATGCCCTCGATGCCGCA 62.916 66.667 0.00 0.00 35.37 5.69
57 58 2.592861 GCCATGGACGATGCCCTC 60.593 66.667 18.40 0.00 0.00 4.30
58 59 4.552365 CGCCATGGACGATGCCCT 62.552 66.667 18.40 0.00 0.00 5.19
59 60 4.545706 TCGCCATGGACGATGCCC 62.546 66.667 22.05 0.02 33.96 5.36
60 61 2.969238 CTCGCCATGGACGATGCC 60.969 66.667 24.74 2.89 39.12 4.40
61 62 3.643978 GCTCGCCATGGACGATGC 61.644 66.667 24.74 23.61 39.12 3.91
62 63 2.202919 TGCTCGCCATGGACGATG 60.203 61.111 24.74 19.84 39.12 3.84
63 64 2.107750 CTGCTCGCCATGGACGAT 59.892 61.111 24.74 0.00 39.12 3.73
64 65 4.819761 GCTGCTCGCCATGGACGA 62.820 66.667 23.59 23.59 38.02 4.20
65 66 4.827087 AGCTGCTCGCCATGGACG 62.827 66.667 18.40 18.60 40.39 4.79
66 67 3.200593 CAGCTGCTCGCCATGGAC 61.201 66.667 18.40 5.97 40.39 4.02
67 68 4.478371 CCAGCTGCTCGCCATGGA 62.478 66.667 18.40 0.00 36.35 3.41
69 70 4.478371 TCCCAGCTGCTCGCCATG 62.478 66.667 8.66 0.00 40.39 3.66
70 71 4.172512 CTCCCAGCTGCTCGCCAT 62.173 66.667 8.66 0.00 40.39 4.40
91 92 3.699134 AAAATCCTCCCGCCCGCTC 62.699 63.158 0.00 0.00 0.00 5.03
92 93 3.282374 AAAAATCCTCCCGCCCGCT 62.282 57.895 0.00 0.00 0.00 5.52
93 94 2.754254 AAAAATCCTCCCGCCCGC 60.754 61.111 0.00 0.00 0.00 6.13
94 95 0.963355 TTCAAAAATCCTCCCGCCCG 60.963 55.000 0.00 0.00 0.00 6.13
95 96 1.262417 TTTCAAAAATCCTCCCGCCC 58.738 50.000 0.00 0.00 0.00 6.13
96 97 2.353704 CCTTTTCAAAAATCCTCCCGCC 60.354 50.000 0.00 0.00 0.00 6.13
97 98 2.299013 ACCTTTTCAAAAATCCTCCCGC 59.701 45.455 0.00 0.00 0.00 6.13
98 99 3.320826 ACACCTTTTCAAAAATCCTCCCG 59.679 43.478 0.00 0.00 0.00 5.14
99 100 4.955811 ACACCTTTTCAAAAATCCTCCC 57.044 40.909 0.00 0.00 0.00 4.30
100 101 5.773176 TCCTACACCTTTTCAAAAATCCTCC 59.227 40.000 0.00 0.00 0.00 4.30
101 102 6.894339 TCCTACACCTTTTCAAAAATCCTC 57.106 37.500 0.00 0.00 0.00 3.71
102 103 7.669089 TTTCCTACACCTTTTCAAAAATCCT 57.331 32.000 0.00 0.00 0.00 3.24
103 104 8.773645 CATTTTCCTACACCTTTTCAAAAATCC 58.226 33.333 0.00 0.00 0.00 3.01
104 105 8.773645 CCATTTTCCTACACCTTTTCAAAAATC 58.226 33.333 0.00 0.00 0.00 2.17
105 106 8.271458 ACCATTTTCCTACACCTTTTCAAAAAT 58.729 29.630 0.00 0.00 0.00 1.82
106 107 7.550906 CACCATTTTCCTACACCTTTTCAAAAA 59.449 33.333 0.00 0.00 0.00 1.94
107 108 7.044798 CACCATTTTCCTACACCTTTTCAAAA 58.955 34.615 0.00 0.00 0.00 2.44
108 109 6.407525 CCACCATTTTCCTACACCTTTTCAAA 60.408 38.462 0.00 0.00 0.00 2.69
109 110 5.069781 CCACCATTTTCCTACACCTTTTCAA 59.930 40.000 0.00 0.00 0.00 2.69
110 111 4.586841 CCACCATTTTCCTACACCTTTTCA 59.413 41.667 0.00 0.00 0.00 2.69
111 112 4.830600 TCCACCATTTTCCTACACCTTTTC 59.169 41.667 0.00 0.00 0.00 2.29
112 113 4.810345 TCCACCATTTTCCTACACCTTTT 58.190 39.130 0.00 0.00 0.00 2.27
113 114 4.463050 TCCACCATTTTCCTACACCTTT 57.537 40.909 0.00 0.00 0.00 3.11
114 115 4.344104 CATCCACCATTTTCCTACACCTT 58.656 43.478 0.00 0.00 0.00 3.50
115 116 3.877735 GCATCCACCATTTTCCTACACCT 60.878 47.826 0.00 0.00 0.00 4.00
116 117 2.427095 GCATCCACCATTTTCCTACACC 59.573 50.000 0.00 0.00 0.00 4.16
117 118 3.356290 AGCATCCACCATTTTCCTACAC 58.644 45.455 0.00 0.00 0.00 2.90
118 119 3.737559 AGCATCCACCATTTTCCTACA 57.262 42.857 0.00 0.00 0.00 2.74
119 120 4.747810 CAAAGCATCCACCATTTTCCTAC 58.252 43.478 0.00 0.00 0.00 3.18
120 121 3.195396 GCAAAGCATCCACCATTTTCCTA 59.805 43.478 0.00 0.00 0.00 2.94
121 122 2.027837 GCAAAGCATCCACCATTTTCCT 60.028 45.455 0.00 0.00 0.00 3.36
122 123 2.349590 GCAAAGCATCCACCATTTTCC 58.650 47.619 0.00 0.00 0.00 3.13
123 124 2.289569 TGGCAAAGCATCCACCATTTTC 60.290 45.455 0.00 0.00 0.00 2.29
124 125 1.698532 TGGCAAAGCATCCACCATTTT 59.301 42.857 0.00 0.00 0.00 1.82
125 126 1.002315 GTGGCAAAGCATCCACCATTT 59.998 47.619 0.00 0.00 45.26 2.32
126 127 0.609662 GTGGCAAAGCATCCACCATT 59.390 50.000 0.00 0.00 45.26 3.16
127 128 2.279842 GTGGCAAAGCATCCACCAT 58.720 52.632 0.00 0.00 45.26 3.55
128 129 3.776158 GTGGCAAAGCATCCACCA 58.224 55.556 0.00 0.00 45.26 4.17
131 132 1.971167 GTCGGTGGCAAAGCATCCA 60.971 57.895 0.00 0.00 0.00 3.41
132 133 0.392461 TAGTCGGTGGCAAAGCATCC 60.392 55.000 0.00 0.00 0.00 3.51
133 134 1.009829 CTAGTCGGTGGCAAAGCATC 58.990 55.000 0.00 0.00 0.00 3.91
134 135 1.026718 GCTAGTCGGTGGCAAAGCAT 61.027 55.000 0.00 0.00 31.47 3.79
135 136 1.671054 GCTAGTCGGTGGCAAAGCA 60.671 57.895 0.00 0.00 31.47 3.91
136 137 2.740714 CGCTAGTCGGTGGCAAAGC 61.741 63.158 0.00 0.00 31.47 3.51
137 138 3.474806 CGCTAGTCGGTGGCAAAG 58.525 61.111 0.00 0.00 31.47 2.77
146 147 2.349249 CGTCAACTATACCCGCTAGTCG 60.349 54.545 0.00 0.00 38.08 4.18
147 148 2.604132 GCGTCAACTATACCCGCTAGTC 60.604 54.545 0.00 0.00 41.06 2.59
148 149 1.336125 GCGTCAACTATACCCGCTAGT 59.664 52.381 0.00 0.00 41.06 2.57
149 150 1.662309 CGCGTCAACTATACCCGCTAG 60.662 57.143 0.00 0.00 42.01 3.42
150 151 0.308684 CGCGTCAACTATACCCGCTA 59.691 55.000 0.00 0.00 42.01 4.26
151 152 1.065273 CGCGTCAACTATACCCGCT 59.935 57.895 0.00 0.00 42.01 5.52
152 153 2.583164 GCGCGTCAACTATACCCGC 61.583 63.158 8.43 0.00 37.04 6.13
153 154 2.290789 CGCGCGTCAACTATACCCG 61.291 63.158 24.19 0.00 0.00 5.28
154 155 1.947642 CCGCGCGTCAACTATACCC 60.948 63.158 29.95 0.00 0.00 3.69
155 156 2.583164 GCCGCGCGTCAACTATACC 61.583 63.158 29.95 0.00 0.00 2.73
156 157 2.918641 GCCGCGCGTCAACTATAC 59.081 61.111 29.95 2.24 0.00 1.47
184 185 4.400109 TCAGCGCGGACACGAGAC 62.400 66.667 8.83 0.00 42.82 3.36
185 186 4.400109 GTCAGCGCGGACACGAGA 62.400 66.667 31.48 5.42 42.82 4.04
197 198 0.955428 TGACCCTCATTTGCGTCAGC 60.955 55.000 0.00 0.00 45.41 4.26
198 199 1.522668 TTGACCCTCATTTGCGTCAG 58.477 50.000 0.00 0.00 36.65 3.51
199 200 1.974265 TTTGACCCTCATTTGCGTCA 58.026 45.000 0.00 0.00 33.56 4.35
200 201 3.575965 ATTTTGACCCTCATTTGCGTC 57.424 42.857 0.00 0.00 0.00 5.19
201 202 3.554752 CCAATTTTGACCCTCATTTGCGT 60.555 43.478 0.00 0.00 0.00 5.24
202 203 2.995258 CCAATTTTGACCCTCATTTGCG 59.005 45.455 0.00 0.00 0.00 4.85
203 204 3.337358 CCCAATTTTGACCCTCATTTGC 58.663 45.455 0.00 0.00 0.00 3.68
204 205 3.337358 GCCCAATTTTGACCCTCATTTG 58.663 45.455 0.00 0.00 0.00 2.32
205 206 2.305635 GGCCCAATTTTGACCCTCATTT 59.694 45.455 0.00 0.00 0.00 2.32
206 207 1.908619 GGCCCAATTTTGACCCTCATT 59.091 47.619 0.00 0.00 0.00 2.57
207 208 1.571955 GGCCCAATTTTGACCCTCAT 58.428 50.000 0.00 0.00 0.00 2.90
208 209 0.897863 CGGCCCAATTTTGACCCTCA 60.898 55.000 0.00 0.00 0.00 3.86
209 210 0.610785 TCGGCCCAATTTTGACCCTC 60.611 55.000 0.00 0.00 0.00 4.30
210 211 0.611896 CTCGGCCCAATTTTGACCCT 60.612 55.000 0.00 0.00 0.00 4.34
211 212 0.610785 TCTCGGCCCAATTTTGACCC 60.611 55.000 0.00 0.00 0.00 4.46
212 213 1.253100 TTCTCGGCCCAATTTTGACC 58.747 50.000 0.00 0.00 0.00 4.02
213 214 2.417243 CCATTCTCGGCCCAATTTTGAC 60.417 50.000 0.00 0.00 0.00 3.18
214 215 1.824230 CCATTCTCGGCCCAATTTTGA 59.176 47.619 0.00 0.00 0.00 2.69
215 216 1.824230 TCCATTCTCGGCCCAATTTTG 59.176 47.619 0.00 0.00 0.00 2.44
216 217 2.230130 TCCATTCTCGGCCCAATTTT 57.770 45.000 0.00 0.00 0.00 1.82
217 218 2.310538 GATCCATTCTCGGCCCAATTT 58.689 47.619 0.00 0.00 0.00 1.82
218 219 1.815408 CGATCCATTCTCGGCCCAATT 60.815 52.381 0.00 0.00 32.58 2.32
219 220 0.250467 CGATCCATTCTCGGCCCAAT 60.250 55.000 0.00 0.00 32.58 3.16
220 221 1.146041 CGATCCATTCTCGGCCCAA 59.854 57.895 0.00 0.00 32.58 4.12
221 222 2.821685 CGATCCATTCTCGGCCCA 59.178 61.111 0.00 0.00 32.58 5.36
226 227 0.936764 CGTCTGCCGATCCATTCTCG 60.937 60.000 0.00 0.00 39.56 4.04
227 228 0.598680 CCGTCTGCCGATCCATTCTC 60.599 60.000 0.00 0.00 39.56 2.87
228 229 1.043116 TCCGTCTGCCGATCCATTCT 61.043 55.000 0.00 0.00 39.56 2.40
229 230 0.876342 GTCCGTCTGCCGATCCATTC 60.876 60.000 0.00 0.00 39.56 2.67
230 231 1.144057 GTCCGTCTGCCGATCCATT 59.856 57.895 0.00 0.00 39.56 3.16
231 232 2.815308 GTCCGTCTGCCGATCCAT 59.185 61.111 0.00 0.00 39.56 3.41
232 233 3.822192 CGTCCGTCTGCCGATCCA 61.822 66.667 0.00 0.00 39.56 3.41
253 254 4.337060 GTTTGGGTTGCCGCGGAC 62.337 66.667 33.48 19.85 0.00 4.79
254 255 4.877619 TGTTTGGGTTGCCGCGGA 62.878 61.111 33.48 11.82 0.00 5.54
255 256 4.341502 CTGTTTGGGTTGCCGCGG 62.342 66.667 24.05 24.05 0.00 6.46
256 257 3.283684 TCTGTTTGGGTTGCCGCG 61.284 61.111 0.00 0.00 0.00 6.46
257 258 2.335011 GTCTGTTTGGGTTGCCGC 59.665 61.111 0.00 0.00 0.00 6.53
258 259 2.637025 CGTCTGTTTGGGTTGCCG 59.363 61.111 0.00 0.00 0.00 5.69
259 260 2.561037 CCCGTCTGTTTGGGTTGCC 61.561 63.158 0.00 0.00 40.76 4.52
260 261 3.039134 CCCGTCTGTTTGGGTTGC 58.961 61.111 0.00 0.00 40.76 4.17
275 276 3.346631 TTAGAGTTCGTCCGCGCCC 62.347 63.158 0.00 0.00 38.14 6.13
276 277 2.157073 GTTAGAGTTCGTCCGCGCC 61.157 63.158 0.00 0.00 38.14 6.53
277 278 2.157073 GGTTAGAGTTCGTCCGCGC 61.157 63.158 0.00 0.00 38.14 6.86
278 279 1.866496 CGGTTAGAGTTCGTCCGCG 60.866 63.158 0.00 0.00 39.92 6.46
279 280 0.796113 GACGGTTAGAGTTCGTCCGC 60.796 60.000 0.00 0.00 44.96 5.54
280 281 3.302968 GACGGTTAGAGTTCGTCCG 57.697 57.895 0.00 0.00 44.96 4.79
283 284 1.891150 ACATGGACGGTTAGAGTTCGT 59.109 47.619 0.00 0.00 39.99 3.85
284 285 2.649331 ACATGGACGGTTAGAGTTCG 57.351 50.000 0.00 0.00 0.00 3.95
285 286 3.432782 CGTACATGGACGGTTAGAGTTC 58.567 50.000 23.17 0.00 39.19 3.01
286 287 3.498927 CGTACATGGACGGTTAGAGTT 57.501 47.619 23.17 0.00 39.19 3.01
306 307 1.104577 TCCTTGTTTGCAACGGGGAC 61.105 55.000 0.00 0.00 32.42 4.46
307 308 0.395862 TTCCTTGTTTGCAACGGGGA 60.396 50.000 0.00 1.91 34.45 4.81
308 309 0.461961 TTTCCTTGTTTGCAACGGGG 59.538 50.000 0.00 0.00 0.00 5.73
309 310 1.407258 TCTTTCCTTGTTTGCAACGGG 59.593 47.619 0.00 0.00 0.00 5.28
310 311 2.357637 TCTCTTTCCTTGTTTGCAACGG 59.642 45.455 0.00 0.00 0.00 4.44
311 312 3.691049 TCTCTTTCCTTGTTTGCAACG 57.309 42.857 0.00 0.00 0.00 4.10
312 313 4.222114 CGATCTCTTTCCTTGTTTGCAAC 58.778 43.478 0.00 0.00 0.00 4.17
313 314 3.304659 GCGATCTCTTTCCTTGTTTGCAA 60.305 43.478 0.00 0.00 0.00 4.08
314 315 2.226437 GCGATCTCTTTCCTTGTTTGCA 59.774 45.455 0.00 0.00 0.00 4.08
315 316 2.726066 CGCGATCTCTTTCCTTGTTTGC 60.726 50.000 0.00 0.00 0.00 3.68
316 317 2.159653 CCGCGATCTCTTTCCTTGTTTG 60.160 50.000 8.23 0.00 0.00 2.93
317 318 2.076863 CCGCGATCTCTTTCCTTGTTT 58.923 47.619 8.23 0.00 0.00 2.83
318 319 1.726853 CCGCGATCTCTTTCCTTGTT 58.273 50.000 8.23 0.00 0.00 2.83
319 320 0.741221 GCCGCGATCTCTTTCCTTGT 60.741 55.000 8.23 0.00 0.00 3.16
320 321 1.756375 CGCCGCGATCTCTTTCCTTG 61.756 60.000 8.23 0.00 0.00 3.61
321 322 1.519455 CGCCGCGATCTCTTTCCTT 60.519 57.895 8.23 0.00 0.00 3.36
322 323 1.381928 TACGCCGCGATCTCTTTCCT 61.382 55.000 21.79 0.00 0.00 3.36
323 324 0.318784 ATACGCCGCGATCTCTTTCC 60.319 55.000 21.79 0.00 0.00 3.13
324 325 1.053811 GATACGCCGCGATCTCTTTC 58.946 55.000 21.79 0.00 0.00 2.62
325 326 0.660595 CGATACGCCGCGATCTCTTT 60.661 55.000 21.79 0.00 0.00 2.52
326 327 1.082038 CGATACGCCGCGATCTCTT 60.082 57.895 21.79 0.00 0.00 2.85
327 328 2.556792 CGATACGCCGCGATCTCT 59.443 61.111 21.79 0.00 0.00 3.10
338 339 3.432592 TCTCTTATCTTCCTCGCGATACG 59.567 47.826 10.36 0.00 45.62 3.06
339 340 5.122554 TCATCTCTTATCTTCCTCGCGATAC 59.877 44.000 10.36 0.00 0.00 2.24
340 341 5.122554 GTCATCTCTTATCTTCCTCGCGATA 59.877 44.000 10.36 0.00 0.00 2.92
341 342 4.075682 TCATCTCTTATCTTCCTCGCGAT 58.924 43.478 10.36 0.00 0.00 4.58
342 343 3.251245 GTCATCTCTTATCTTCCTCGCGA 59.749 47.826 9.26 9.26 0.00 5.87
343 344 3.560503 GTCATCTCTTATCTTCCTCGCG 58.439 50.000 0.00 0.00 0.00 5.87
344 345 3.560503 CGTCATCTCTTATCTTCCTCGC 58.439 50.000 0.00 0.00 0.00 5.03
345 346 3.610585 GCCGTCATCTCTTATCTTCCTCG 60.611 52.174 0.00 0.00 0.00 4.63
346 347 3.572255 AGCCGTCATCTCTTATCTTCCTC 59.428 47.826 0.00 0.00 0.00 3.71
347 348 3.571590 AGCCGTCATCTCTTATCTTCCT 58.428 45.455 0.00 0.00 0.00 3.36
348 349 3.305744 GGAGCCGTCATCTCTTATCTTCC 60.306 52.174 0.00 0.00 0.00 3.46
349 350 3.572255 AGGAGCCGTCATCTCTTATCTTC 59.428 47.826 0.00 0.00 0.00 2.87
350 351 3.571590 AGGAGCCGTCATCTCTTATCTT 58.428 45.455 0.00 0.00 0.00 2.40
351 352 3.237268 AGGAGCCGTCATCTCTTATCT 57.763 47.619 0.00 0.00 0.00 1.98
352 353 4.303282 GAAAGGAGCCGTCATCTCTTATC 58.697 47.826 0.00 0.00 0.00 1.75
353 354 3.070302 GGAAAGGAGCCGTCATCTCTTAT 59.930 47.826 0.00 0.00 0.00 1.73
354 355 2.431057 GGAAAGGAGCCGTCATCTCTTA 59.569 50.000 0.00 0.00 0.00 2.10
355 356 1.208293 GGAAAGGAGCCGTCATCTCTT 59.792 52.381 0.00 0.00 0.00 2.85
356 357 0.827368 GGAAAGGAGCCGTCATCTCT 59.173 55.000 0.00 0.00 0.00 3.10
357 358 0.537188 TGGAAAGGAGCCGTCATCTC 59.463 55.000 0.00 0.00 0.00 2.75
358 359 0.539051 CTGGAAAGGAGCCGTCATCT 59.461 55.000 0.00 0.00 0.00 2.90
359 360 1.092345 GCTGGAAAGGAGCCGTCATC 61.092 60.000 0.00 0.00 0.00 2.92
360 361 1.078143 GCTGGAAAGGAGCCGTCAT 60.078 57.895 0.00 0.00 0.00 3.06
361 362 2.347490 GCTGGAAAGGAGCCGTCA 59.653 61.111 0.00 0.00 0.00 4.35
362 363 2.436824 GGCTGGAAAGGAGCCGTC 60.437 66.667 0.00 0.00 46.47 4.79
366 367 1.529309 CCTAGGGCTGGAAAGGAGC 59.471 63.158 0.00 0.00 35.57 4.70
367 368 1.529309 GCCTAGGGCTGGAAAGGAG 59.471 63.158 11.72 0.00 46.69 3.69
368 369 3.741325 GCCTAGGGCTGGAAAGGA 58.259 61.111 11.72 0.00 46.69 3.36
389 390 4.465512 CTCGTTGCATGCGTGGGC 62.466 66.667 14.09 0.05 40.52 5.36
390 391 3.803082 CCTCGTTGCATGCGTGGG 61.803 66.667 14.09 4.80 38.76 4.61
391 392 3.803082 CCCTCGTTGCATGCGTGG 61.803 66.667 14.09 19.06 41.11 4.94
392 393 3.803082 CCCCTCGTTGCATGCGTG 61.803 66.667 14.09 0.09 0.00 5.34
393 394 1.966901 TATCCCCTCGTTGCATGCGT 61.967 55.000 14.09 0.00 0.00 5.24
394 395 0.603707 ATATCCCCTCGTTGCATGCG 60.604 55.000 14.09 0.00 0.00 4.73
395 396 0.877071 CATATCCCCTCGTTGCATGC 59.123 55.000 11.82 11.82 0.00 4.06
396 397 0.877071 GCATATCCCCTCGTTGCATG 59.123 55.000 0.00 0.00 33.58 4.06
397 398 0.250901 GGCATATCCCCTCGTTGCAT 60.251 55.000 0.00 0.00 35.04 3.96
398 399 1.148273 GGCATATCCCCTCGTTGCA 59.852 57.895 0.00 0.00 35.04 4.08
399 400 1.961277 CGGCATATCCCCTCGTTGC 60.961 63.158 0.00 0.00 0.00 4.17
400 401 0.600255 GTCGGCATATCCCCTCGTTG 60.600 60.000 0.00 0.00 0.00 4.10
401 402 1.746517 GTCGGCATATCCCCTCGTT 59.253 57.895 0.00 0.00 0.00 3.85
402 403 2.561956 CGTCGGCATATCCCCTCGT 61.562 63.158 0.00 0.00 0.00 4.18
403 404 2.258591 CGTCGGCATATCCCCTCG 59.741 66.667 0.00 0.00 0.00 4.63
404 405 1.289380 GACGTCGGCATATCCCCTC 59.711 63.158 0.00 0.00 0.00 4.30
405 406 1.046472 TTGACGTCGGCATATCCCCT 61.046 55.000 11.62 0.00 0.00 4.79
406 407 0.179067 TTTGACGTCGGCATATCCCC 60.179 55.000 11.62 0.00 0.00 4.81
407 408 1.217882 CTTTGACGTCGGCATATCCC 58.782 55.000 11.62 0.00 0.00 3.85
408 409 1.217882 CCTTTGACGTCGGCATATCC 58.782 55.000 11.62 0.00 0.00 2.59
409 410 1.935933 ACCTTTGACGTCGGCATATC 58.064 50.000 11.62 0.00 0.00 1.63
410 411 2.396590 AACCTTTGACGTCGGCATAT 57.603 45.000 11.62 0.00 0.00 1.78
411 412 2.172851 AAACCTTTGACGTCGGCATA 57.827 45.000 11.62 0.00 0.00 3.14
412 413 1.802365 GTAAACCTTTGACGTCGGCAT 59.198 47.619 11.62 1.65 0.00 4.40
413 414 1.219646 GTAAACCTTTGACGTCGGCA 58.780 50.000 11.62 0.00 0.00 5.69
414 415 1.193874 CTGTAAACCTTTGACGTCGGC 59.806 52.381 11.62 0.00 0.00 5.54
415 416 2.220133 CACTGTAAACCTTTGACGTCGG 59.780 50.000 11.62 8.77 0.00 4.79
416 417 2.348218 GCACTGTAAACCTTTGACGTCG 60.348 50.000 11.62 0.00 0.00 5.12
417 418 2.870411 AGCACTGTAAACCTTTGACGTC 59.130 45.455 9.11 9.11 0.00 4.34
418 419 2.914059 AGCACTGTAAACCTTTGACGT 58.086 42.857 0.00 0.00 0.00 4.34
419 420 3.963383 AAGCACTGTAAACCTTTGACG 57.037 42.857 0.00 0.00 0.00 4.35
427 428 6.373186 ACTTCTGGTTTAAGCACTGTAAAC 57.627 37.500 0.00 0.00 39.62 2.01
428 429 7.399245 AAACTTCTGGTTTAAGCACTGTAAA 57.601 32.000 0.00 0.00 45.20 2.01
429 430 6.038936 GGAAACTTCTGGTTTAAGCACTGTAA 59.961 38.462 0.00 0.00 46.77 2.41
430 431 5.529800 GGAAACTTCTGGTTTAAGCACTGTA 59.470 40.000 0.00 0.00 46.77 2.74
431 432 4.338400 GGAAACTTCTGGTTTAAGCACTGT 59.662 41.667 0.00 0.00 46.77 3.55
432 433 4.554723 CGGAAACTTCTGGTTTAAGCACTG 60.555 45.833 0.00 0.00 46.77 3.66
433 434 3.564225 CGGAAACTTCTGGTTTAAGCACT 59.436 43.478 0.00 0.00 46.77 4.40
434 435 3.304458 CCGGAAACTTCTGGTTTAAGCAC 60.304 47.826 8.90 0.00 46.77 4.40
435 436 2.882137 CCGGAAACTTCTGGTTTAAGCA 59.118 45.455 8.90 0.00 46.77 3.91
436 437 3.554259 CCGGAAACTTCTGGTTTAAGC 57.446 47.619 8.90 0.00 46.77 3.09
444 445 0.674895 CTGCCCTCCGGAAACTTCTG 60.675 60.000 5.23 0.00 0.00 3.02
445 446 1.679898 CTGCCCTCCGGAAACTTCT 59.320 57.895 5.23 0.00 0.00 2.85
448 449 3.330720 CCCTGCCCTCCGGAAACT 61.331 66.667 5.23 0.00 0.00 2.66
454 455 3.466791 CTGTATGCCCTGCCCTCCG 62.467 68.421 0.00 0.00 0.00 4.63
455 456 2.512896 CTGTATGCCCTGCCCTCC 59.487 66.667 0.00 0.00 0.00 4.30
472 473 1.062002 CCGTTCATTGGACGTACATGC 59.938 52.381 15.97 0.00 38.77 4.06
475 476 2.231721 TCATCCGTTCATTGGACGTACA 59.768 45.455 15.97 0.00 38.60 2.90
499 500 1.125748 GCTGATTGATAGATCGTGCGC 59.874 52.381 0.00 0.00 0.00 6.09
512 513 2.932614 GGTACAGTGCACTAGCTGATTG 59.067 50.000 21.20 8.03 42.74 2.67
513 514 2.567169 TGGTACAGTGCACTAGCTGATT 59.433 45.455 21.20 0.59 42.74 2.57
514 515 2.179427 TGGTACAGTGCACTAGCTGAT 58.821 47.619 21.20 3.71 42.74 2.90
515 516 1.627864 TGGTACAGTGCACTAGCTGA 58.372 50.000 21.20 0.60 42.74 4.26
516 517 2.455674 TTGGTACAGTGCACTAGCTG 57.544 50.000 21.20 10.85 42.39 4.24
552 553 4.324402 GCTGTTGTTGCCTAATCAAATTCG 59.676 41.667 0.00 0.00 0.00 3.34
566 569 3.538003 CGCGTGTAAATATGCTGTTGTTG 59.462 43.478 0.00 0.00 0.00 3.33
588 591 8.149973 TCTACTTTATTCCGCATATGGTTTTC 57.850 34.615 4.56 0.00 0.00 2.29
601 604 6.985188 TGTGTGCAGATTCTACTTTATTCC 57.015 37.500 0.00 0.00 0.00 3.01
629 632 7.545965 TGCGAAAAGGAAGAATTTTTAACACAA 59.454 29.630 0.00 0.00 30.22 3.33
641 645 4.261447 GCTTTTAGGTGCGAAAAGGAAGAA 60.261 41.667 9.27 0.00 41.95 2.52
909 923 2.093973 AGGTACATATAGCGAGCCATGC 60.094 50.000 0.00 0.00 33.81 4.06
918 932 4.815269 CTGAAGCCTCAGGTACATATAGC 58.185 47.826 4.26 0.00 44.72 2.97
942 960 4.782019 TTGGAATGATGGTAGCAACAAC 57.218 40.909 9.03 6.58 0.00 3.32
1024 1042 1.671054 CACCACGGACGATGGCTTT 60.671 57.895 11.40 0.00 41.31 3.51
1055 1073 1.841556 ACCTCCCTTGTGCCGAGAA 60.842 57.895 0.00 0.00 0.00 2.87
1126 1144 1.207329 GTCGAGCCTACATCCCTTGTT 59.793 52.381 0.00 0.00 39.87 2.83
1137 1155 1.520120 ATCGTCGTCGTCGAGCCTA 60.520 57.895 18.55 0.00 46.96 3.93
1282 1301 1.562942 AGAGCCAGCCATCTTCATTCA 59.437 47.619 0.00 0.00 0.00 2.57
1329 1348 7.770897 AGACACAAAATACTTTATCCTAGGCAG 59.229 37.037 2.96 0.00 0.00 4.85
1384 1403 9.825972 CTGTTATGTTGAACATTTTGTACTAGG 57.174 33.333 16.75 0.82 39.88 3.02
1441 1460 4.651778 ACAAGTGCTTGCTTCCTGTATTA 58.348 39.130 11.43 0.00 44.03 0.98
1442 1461 3.490348 ACAAGTGCTTGCTTCCTGTATT 58.510 40.909 11.43 0.00 44.03 1.89
1547 1608 1.670791 TTTGTCGACTGGGGTTGAAC 58.329 50.000 17.92 0.00 37.58 3.18
1602 1663 2.224305 GGCAACTTACCTCCATCGCTAT 60.224 50.000 0.00 0.00 0.00 2.97
1603 1664 1.138266 GGCAACTTACCTCCATCGCTA 59.862 52.381 0.00 0.00 0.00 4.26
1807 1877 2.619074 GCTTTTAGATGGGCTGGTGAGT 60.619 50.000 0.00 0.00 0.00 3.41
1811 1881 0.033109 GGGCTTTTAGATGGGCTGGT 60.033 55.000 0.00 0.00 0.00 4.00
1838 1911 6.540189 TGCTGCATTCTTTTCCTCTTCTATAC 59.460 38.462 0.00 0.00 0.00 1.47
1928 2006 2.444256 GGCTTATCCCTCCAGCGGT 61.444 63.158 0.00 0.00 34.09 5.68
1941 2019 9.742144 TTAGACAAATAAATACTTGGTGGCTTA 57.258 29.630 0.00 0.00 0.00 3.09
2008 2089 5.996271 AGGATCGGAGGGAGTATATCATA 57.004 43.478 0.00 0.00 0.00 2.15
2014 2095 5.217400 AGTAAAAAGGATCGGAGGGAGTAT 58.783 41.667 0.00 0.00 0.00 2.12
2017 2098 3.707102 AGAGTAAAAAGGATCGGAGGGAG 59.293 47.826 0.00 0.00 0.00 4.30
2018 2099 3.451178 CAGAGTAAAAAGGATCGGAGGGA 59.549 47.826 0.00 0.00 0.00 4.20
2019 2100 3.798202 CAGAGTAAAAAGGATCGGAGGG 58.202 50.000 0.00 0.00 0.00 4.30
2020 2101 3.198872 GCAGAGTAAAAAGGATCGGAGG 58.801 50.000 0.00 0.00 0.00 4.30
2021 2102 3.861840 TGCAGAGTAAAAAGGATCGGAG 58.138 45.455 0.00 0.00 0.00 4.63
2022 2103 3.973206 TGCAGAGTAAAAAGGATCGGA 57.027 42.857 0.00 0.00 0.00 4.55
2023 2104 6.867662 AATATGCAGAGTAAAAAGGATCGG 57.132 37.500 0.00 0.00 0.00 4.18
2024 2105 7.657761 ACCTAATATGCAGAGTAAAAAGGATCG 59.342 37.037 2.56 0.00 0.00 3.69
2025 2106 8.910351 ACCTAATATGCAGAGTAAAAAGGATC 57.090 34.615 2.56 0.00 0.00 3.36
2026 2107 9.700831 AAACCTAATATGCAGAGTAAAAAGGAT 57.299 29.630 2.56 0.00 0.00 3.24
2027 2108 8.956426 CAAACCTAATATGCAGAGTAAAAAGGA 58.044 33.333 2.56 0.00 0.00 3.36
2028 2109 8.739972 ACAAACCTAATATGCAGAGTAAAAAGG 58.260 33.333 0.00 0.00 0.00 3.11
2029 2110 9.774742 GACAAACCTAATATGCAGAGTAAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
2030 2111 9.515226 AGACAAACCTAATATGCAGAGTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
2031 2112 8.946085 CAGACAAACCTAATATGCAGAGTAAAA 58.054 33.333 0.00 0.00 0.00 1.52
2032 2113 8.318412 TCAGACAAACCTAATATGCAGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
2033 2114 7.847096 TCAGACAAACCTAATATGCAGAGTAA 58.153 34.615 0.00 0.00 0.00 2.24
2034 2115 7.418337 TCAGACAAACCTAATATGCAGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
2035 2116 6.299805 TCAGACAAACCTAATATGCAGAGT 57.700 37.500 0.00 0.00 0.00 3.24
2036 2117 6.820656 ACTTCAGACAAACCTAATATGCAGAG 59.179 38.462 0.00 0.00 0.00 3.35
2037 2118 6.711277 ACTTCAGACAAACCTAATATGCAGA 58.289 36.000 0.00 0.00 0.00 4.26
2038 2119 6.595326 TGACTTCAGACAAACCTAATATGCAG 59.405 38.462 0.00 0.00 0.00 4.41
2039 2120 6.472016 TGACTTCAGACAAACCTAATATGCA 58.528 36.000 0.00 0.00 0.00 3.96
2040 2121 6.985188 TGACTTCAGACAAACCTAATATGC 57.015 37.500 0.00 0.00 0.00 3.14
2041 2122 9.388506 AGATTGACTTCAGACAAACCTAATATG 57.611 33.333 0.00 0.00 33.89 1.78
2042 2123 9.606631 GAGATTGACTTCAGACAAACCTAATAT 57.393 33.333 0.00 0.00 33.89 1.28
2043 2124 8.593679 TGAGATTGACTTCAGACAAACCTAATA 58.406 33.333 0.00 0.00 33.89 0.98
2044 2125 7.453393 TGAGATTGACTTCAGACAAACCTAAT 58.547 34.615 0.00 0.00 33.89 1.73
2045 2126 6.826668 TGAGATTGACTTCAGACAAACCTAA 58.173 36.000 0.00 0.00 33.89 2.69
2046 2127 6.419484 TGAGATTGACTTCAGACAAACCTA 57.581 37.500 0.00 0.00 33.89 3.08
2047 2128 5.296151 TGAGATTGACTTCAGACAAACCT 57.704 39.130 0.00 0.00 33.89 3.50
2048 2129 5.123027 GGATGAGATTGACTTCAGACAAACC 59.877 44.000 0.00 0.00 33.89 3.27
2049 2130 5.702670 TGGATGAGATTGACTTCAGACAAAC 59.297 40.000 0.00 0.00 33.89 2.93
2050 2131 5.868454 TGGATGAGATTGACTTCAGACAAA 58.132 37.500 0.00 0.00 33.89 2.83
2051 2132 5.488262 TGGATGAGATTGACTTCAGACAA 57.512 39.130 0.00 0.00 34.59 3.18
2052 2133 5.012458 AGTTGGATGAGATTGACTTCAGACA 59.988 40.000 0.00 0.00 0.00 3.41
2053 2134 5.486526 AGTTGGATGAGATTGACTTCAGAC 58.513 41.667 0.00 0.00 0.00 3.51
2054 2135 5.752036 AGTTGGATGAGATTGACTTCAGA 57.248 39.130 0.00 0.00 0.00 3.27
2055 2136 6.429078 TCAAAGTTGGATGAGATTGACTTCAG 59.571 38.462 0.00 0.00 0.00 3.02
2056 2137 6.205464 GTCAAAGTTGGATGAGATTGACTTCA 59.795 38.462 8.70 0.00 41.92 3.02
2057 2138 6.348868 GGTCAAAGTTGGATGAGATTGACTTC 60.349 42.308 13.97 0.00 43.66 3.01
2058 2139 5.474876 GGTCAAAGTTGGATGAGATTGACTT 59.525 40.000 13.97 0.00 43.66 3.01
2059 2140 5.006386 GGTCAAAGTTGGATGAGATTGACT 58.994 41.667 13.97 0.00 43.66 3.41
2060 2141 4.761739 TGGTCAAAGTTGGATGAGATTGAC 59.238 41.667 7.68 7.68 43.51 3.18
2061 2142 4.984295 TGGTCAAAGTTGGATGAGATTGA 58.016 39.130 0.00 0.00 0.00 2.57
2062 2143 5.706916 CTTGGTCAAAGTTGGATGAGATTG 58.293 41.667 0.00 0.00 0.00 2.67
2063 2144 5.972107 CTTGGTCAAAGTTGGATGAGATT 57.028 39.130 0.00 0.00 0.00 2.40
2100 2181 9.900710 GTTGGTGTTGTTATGTAAATGTCAATA 57.099 29.630 0.00 0.00 0.00 1.90
2101 2182 8.417106 TGTTGGTGTTGTTATGTAAATGTCAAT 58.583 29.630 0.00 0.00 0.00 2.57
2102 2183 7.772166 TGTTGGTGTTGTTATGTAAATGTCAA 58.228 30.769 0.00 0.00 0.00 3.18
2103 2184 7.334844 TGTTGGTGTTGTTATGTAAATGTCA 57.665 32.000 0.00 0.00 0.00 3.58
2104 2185 8.079203 TGATGTTGGTGTTGTTATGTAAATGTC 58.921 33.333 0.00 0.00 0.00 3.06
2105 2186 7.946207 TGATGTTGGTGTTGTTATGTAAATGT 58.054 30.769 0.00 0.00 0.00 2.71
2106 2187 8.984891 ATGATGTTGGTGTTGTTATGTAAATG 57.015 30.769 0.00 0.00 0.00 2.32
2109 2190 9.508642 TCTAATGATGTTGGTGTTGTTATGTAA 57.491 29.630 0.00 0.00 0.00 2.41
2110 2191 9.679661 ATCTAATGATGTTGGTGTTGTTATGTA 57.320 29.630 0.00 0.00 0.00 2.29
2111 2192 7.994425 TCTAATGATGTTGGTGTTGTTATGT 57.006 32.000 0.00 0.00 0.00 2.29
2112 2193 9.507280 GAATCTAATGATGTTGGTGTTGTTATG 57.493 33.333 0.00 0.00 32.44 1.90
2113 2194 9.241919 TGAATCTAATGATGTTGGTGTTGTTAT 57.758 29.630 0.00 0.00 32.44 1.89
2114 2195 8.628630 TGAATCTAATGATGTTGGTGTTGTTA 57.371 30.769 0.00 0.00 32.44 2.41
2115 2196 7.523293 TGAATCTAATGATGTTGGTGTTGTT 57.477 32.000 0.00 0.00 32.44 2.83
2116 2197 7.613022 AGATGAATCTAATGATGTTGGTGTTGT 59.387 33.333 0.00 0.00 34.85 3.32
2117 2198 7.993101 AGATGAATCTAATGATGTTGGTGTTG 58.007 34.615 0.00 0.00 34.85 3.33
2118 2199 7.011763 CGAGATGAATCTAATGATGTTGGTGTT 59.988 37.037 0.00 0.00 37.25 3.32
2119 2200 6.481313 CGAGATGAATCTAATGATGTTGGTGT 59.519 38.462 0.00 0.00 37.25 4.16
2120 2201 6.073385 CCGAGATGAATCTAATGATGTTGGTG 60.073 42.308 0.00 0.00 37.25 4.17
2121 2202 5.994054 CCGAGATGAATCTAATGATGTTGGT 59.006 40.000 0.00 0.00 37.25 3.67
2122 2203 6.226052 TCCGAGATGAATCTAATGATGTTGG 58.774 40.000 0.00 0.00 37.25 3.77
2123 2204 7.719778 TTCCGAGATGAATCTAATGATGTTG 57.280 36.000 0.00 0.00 37.25 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.