>input_sequence_86280
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATGGCTTCCCTCCTGCTGCTGCT
GAAAGCCATCGTCCGTGGTGCCGACGAGGGGCTTCTCGGCACAAGGGAGGTGCCAGAGGAGGTGAAGCAGCCCAAGATGT
TCTCCCCAAACCCTCTGTTGGAGAACAAGGGATGTAGGCTCGACGACGACGATGTGGAAGAAGAACGGTGGCTGGTCGCC
TGCTTGCAGTGGCCCCGGATCAATCGCCAATCAGCTTGGATGCAGACGATCTGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G202000
GCCTTTGCCGGAGGCGGCGGAGGTGATGCCGGACGAGGCGAGGCCGGTTGCGGCATCGAGGGCATCGTCCATGGCGAGCA
GCTGGGAGCGCGAGCGGGCGGGAGGATTTTTGAAAAGGTGTAGGAAAATGGTGGATGCTTTGCCACCGACTAGCGGGTAT
AGTTGACGCGCGGCGCCCGCGTCCGTCTCGTGTCCGCGCTGACGCAAATGAGGGTCAAAATTGGGCCGAGAATGGATCGG
CAGACGGACGCGCGTCCGCGGCAACCCAAACAGACGGGCGCGGACGAACTCTAACCGTCCATGTACGTCCCCGTTGCAAA
CAAGGAAAGAGATCGCGGCGTATCGCGAGGAAGATAAGAGATGACGGCTCCTTTCCAGCCCTAGGCCACGCCCACGCATG
CAACGAGGGGATATGCCGACGTCAAAGGTTTACAGTGCTTAAACCAGAAGTTTCCGGAGGGCAGGGCATACAGCATGTAC
GTCCAATGAACGGATGAAGGCGCACGATCTATCAATCAGCTAGTGCACTGTACCAATCCAATCAACGGACGAC--GAATT
TGATTAGGCAACAACAGCATATTTACACGCGAAAACCATATGCGGAATAAAGTAGAATCTGCACACAAGGTTTGTGTT-A
AAAATTCTTCCTTTTCGCACCTAAAAGCGTAACCAAAATGTTAGATGACCAAACATTTGACAGGGTGAAGAGAATTAGCA
GTGTGTTTTCCAAAATATCAGTACCAACCACGC----------CTCACCTACAGCCTAACAAAACATCACAGCAACCATA
ACACATATCATAAGCTTTCTGTGATCGAACAGAAGAGGAAAAGAATTCCTCCCTCACGAAACAGATGTCTTGCAAGAAAT
GCAAATTCACCTGAAACCAGTAAGAAAAACGAGCACCTGAGTGCATGGCTCGC----TATATGTACCTGAGGCTTCAGCG
TTGTTGCTACCATCATTCCAAAGTAACCAGCCAGCAGCAGTCCTCAAAAATCTATAGATGGCTTCCCTCCTGCTGCTGCT
GAAAGCCATCGTCCGTGGTGCCGACGAGGGGCTTCTCGGCACAAGGGAGGTGCCAGAGGAGGTGAAGCAGCCCAAGATGT
TCTCCCCAAACCCTCTGTTGGAGAACAAGGGATGTAGGCTCGACGACGACGATGTGGAAGAAGAACGGTGGCTGGTCGCC
TGCTTGCAGTGGCCCCGGATCAATCGCCAATCAGCTTGGATGCAGACGATCTGATCTCATC-GATCACTTCATATTCATA
AATGGAGTGCCTGTCAATCTTGAATGAAGATGGCTGGCTCTGCCTTCCAATGTAGTTCTTGCCTACACTGCCTAGGATAA
AGTATTTTGTGTCTGAACAAATGTTGGTTGATTTCTTGCATGCCTAGTACAAAATGTTCAACATAACAGAACTATCTCAC
TGCCAATAAAACTCTATCTTAATACAGGAAG------------------------------------------CAAGCAC
TTGTTATTGGTGAAATTTCTTTCACACATTTCAATGGCCGGTCAAATATACAGCATCCCAAATGATCAACATTTCAGACA
GGTGACAGTTCAACCCCAGTCGACAAAAGGAAGCGGAGGATAGCCACCTTCGGGGGGAGGTTATAGCGATGGAGGTAAGT
TGCCCCAAGAAGTGTGGCCCCTTAGTATGTTCCCTGTGAATTGTGAAAGAAATAAACGTAGCATTA---------TCAAA
TGGAAGCTCATAAAGAGGTTAAGTGCAACGGCGAGTCCAACAGGTGGGATTCAACAGGCTCAAGCCTGCCCTAGGAAACA
ATTTTTTTATTACTATAGTACTCCGATCTGAGCCTAACTCACCAGCCCATCT---AAAAGCCCATTCACCGTATAGAAGA
GGAAAAGAATGCAGCAGTTAGCCAGGCCAGTAGCTGCACGCGCACAAGCACAGCACCGCA-----CGACGCAGCCAGCCA
GCCACACCGCTGGAGGGATAAGCCACCAAGTATTTATTTGTCTAATTCTCAAATTACT---CTAAGTCAGTAAAATATTA
GTCTACTTTATGATATACTCCCTCCGATCCTTTTTACTCTGCATATTAGGTTTGTCTGAAGTCAATCTCATCCAACTTTG
ACCAAGTTTATATAAAAAATTATTGACATTTACATAACAACACCAACATCATTAGATTCATCTCGGAATATATTTTCATA
TTATATTTATTAGATATTATAGATGCTAATAATTTCTAATATAAATTTGGTCAAACTTAACTAAGTTTGACTTCCGG
>chr3A_447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GAGGTTTCTCGAGGGCAGGGCATACAACAGGTAC
GCCCAATGAACGGATGAAGACGCACGATCTATG----AGCTAGTACACTGTACCAATCCAATCAACGGACGAAGAGAATT
TGATTAGGTAACAACAGCATATTTACACGCCAAAACCATATGCAGAATAAAGTAGAATCTGCACGTAAGGTATGTGTT--
AAAAATCTTCCTTTTCGAACCTAACAGCGAAACCAAAATGTTAGATGACCAAACATTTGACAGGGTGAGGAGAATTAGCA
--GTGTTTTCCAAAATATCAGCACCAACCACACCCCCAAACGGCTCACCTACAGCCTAACAAAACAACACAACAACTGTA
ACACATATCATAAGCTTTCTGTGATCGAAGGGAAGAGGAAAAGAATTCCTCCCTCACGAAACAGATGTCTTGCAAGAAAT
GCAAATTCACCTGAAACCAGTAAGAAAAACGAGCACCTGAGTACACGGCTCACTATTTATATGTACCTGCGGCTTGAGCA
TTGTTGCTACCATCATTCCAAAGTAACCAGCCAGCAGCAGTCCTCATCGATCTATAGATGGCTTCCCTCCTGCTGCTGCT
GCAAGCCATCATCCGTGGTGCCGACGAGGGGCGTCTCGGCACAAGGGAGGTGCCAGAGGAGGTGAAGCAGCCCAAGATGT
TCTCCCCAAACCCTCTGTTGGAGCACAAGGGATGCAGGCTCGACGACGACGACGTGGAAGAAGAACGGTGGCTGGTTGCC
TGCTTGCAGTGGCCCCGGACCAATCACCAATCAGCTTGGATGCAGACGATCTGATCTCATC-GATCACTT-ATATTCATA
AATGGAGTGCCTGTCAATCTCGAATGAAGATGGCTGGCTCTGCCTTCCAATGTAGTTCTTGCCTACATTGCCTAGGATAA
AGTATTTTGTGTCTGAACAAATGTTGGTTGATTTCTTGCATGGCTAGTACAAAATGTTCAACATAACAGAGCTATCTCAC
TGCCAATAAAACTCTATCTGTATACAGGAAG------------------------------------------CAAGAAC
TTGTTATTGGTGAAATTTCTTTCACACATTTCAATGGCCGGTCAAATATACAGCATCCCAAATGATCAACATTTCAGACA
GGTGGCAATTCAACCCCAGTCGACAAAAGGAAGTGGAGGATAGCCACCTTCAGGGGGAGGTTGCAGCGATGGAGGTAAGT
TGCCCCATGAAGTGTGGCCTGTTAGTATGTTTCCTGTGAAATGTGACAGAAATAAACGTAGCATTA---------TCAAA
TGGAAGCTCATAAAGAGGTTAAGTTCAACAGCGAG-CCAACAGGTGGGCTTCAACAGGCTCAAGCCTGCCCTAGAAAAC-
ATTTTTTTATTACTAGAGCACTCCGGTCTGAGCCTAGCTCCCCAGCCCATCT---AAAAGCCCATTCACCATATAGAAGA
TGAAAAGAATGCAGCAGTTAGCCAGGCCAATAGCTTCACACGCACAAGCACAGCACCACGCGACTCGACGCAGCCAGACA
GCCACGCCGCTGGAAGGACAAGCCGCCAAATATTTATTTGTCTAATTCTCAAATTACTTTGCTACGTCAGTAAACTATTA
GTCTACTTCATGAT------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3D_458
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AGGGCAGAGCATACAACAGGTAC
GTCCAATGAATGGATGAAGACGCACGATCTACG----AGCTAGTGCACTGTACCAAGCCAATCAACGGACGAAGA--ATT
TGATTAGGTAACAACAGCATATTTACACGCCAAAACCATATGCAGAATAAAGAAGAATCTGCACACAAGGTACGTGTTAA
AAAAATCTTCCTTTTCGCACCTAAAAGTGTAACCAAAATGTTAGATGACCAAACATTTGACAGGGTGAAGAGAATTAGCA
GTGCGTTTTCCAAAATATCAGTACCAACCACGC----------CTCACCTACAGCCTAACAAAACATCACAGCAACCATA
ACACATATCATAAGCTTTCTGTGATCGAGCAGAAGAGGAAAAGAGTTCCTCCCTCACGAAACAGATGTCTTGCAAGAAAT
GCAAATTCACCTGAAACCAGTAAGAAAAACGAGCACCTGAGTACATGGCTCACTAT----ATGTACCTGAGGTTTCAGCA
TTGTTGCTACCATCATTCCAAAGTAAGCAGCCAGCAGCAGTCCTCAAAAATCTATAGATGGCTTCCCTCCTGCTGCTGCT
GCAAGCCATCATCCGTCGTGCCGACGAGGGACGTCTCGGCACAAGGGAGGTGCCAGAGGAGGTGAAGCAGCCCAAGATGT
TCTCCCCAAACCCTCTGTTGGAGCACAAGGGATGCAGGCTCGACGACGATGATGTGGAAGAAGAACGGTGGCTGGTCGCC
TGCTTGCAGTGGCCCCGGACCAATCGCCAATCAGCTTGGATGCAGACGATCTGATCTCATTTGATCACTTCATATTCATA
AATGGAGTGCCTGTCAATCTCGAATGAAGATGGCTGGCTCTGCCTTCCAATGTAGTTCATGCCTACATTGCCTAGGATAA
TGTATTTTGTGTCTGAACAAATGTTGGTTGATTTCTTGCATGGTTAGTACAAAATGTTCAACATATCAGAACTATCTCAC
TGCCAATAAAACTCTATCTGTATACAGGAAGCAAGCACTTGTTATTGATGAAACTCTATCTGTATACAGGAAGCAAGCAC
TTGTTACTGATGAAATTTCTTTCACACACTTCAATAACCGGTCAAATATACAGCATCCTAAGTGATCAACATTTCAGAGA
GGTGATGAATCAACCCCAGTCGACAAAAGGAAGCGGAGGATAGCCACCTTCCGGGGGAGGTTGCAGTGATGGAGGTAAGT
TGCCCCAAGAAGTGTGGCCCCTTAGTATGTTCCCTGTGAATTGTGACAGAAATAAATGTAGTCAGGCCAGTAGCTTCAAA
TGGAAGCTCATAAAGAGGTTAAGTGCAACGGCGAGTCCAACAGATGGGCTTCAACAGGCTCGAGCCTGCCCTAGAAAACA
AAAAA--TATTACTATAGTACTCCGGGTGAAGCAGCCCTAGAAAAAAAATATTACAAAAGCCCATTCACCATATAGAAGA
GGGAAAGAATGCAGCAGTTAGCCAGGCCAGTAGCTTCACACGCACAAGCACAATGCCCCGCTACACAGCCAGA------A
GCCATGCCGCTGGAGGTACAAGCCGCCAAGTATTTATTTGTCTAATTCTCAGATTACATTGCTAAGCCAGTAAACTCTAA
GTCTCCTTCATGATCTA---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----SS----------------S--S----
-------------------S------------SSSSS-----------------------------------S-------
--------S---------------------S------------S---------------------------S--------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S--------S---------------------------S
--------------------------------------------------------------------------------
-S--------S---------------------S-----------------------------------------------
-----------------------S----------S---------------------------------------------
-------------------S------------------------------------------------------------
--------------------S----------------------------------------------S------------
------------------------------------------S-------------------------------------
-------------------SS-----------------------------------------------------------
--------------------------------------------------------------------------------
-------S-------------------------------------------S----------SS----------------
----------------------------------------------S---------------------------------
------------------------------------------------S-------------------------S-----
-------------------------S----------S---S-----------------------------S---------
-----------------------------------S---S-----------------S-S-----------------S--
-----S------------S-----S-------------------------------------------------S-----
--------S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_426
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GGGGATATGCCGACGTCAAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_1881
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ACCAGCCCATCTAAAAGCCC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
