Multiple sequence alignment - TraesCS3B01G202000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G202000 | chr3B | 100.000 | 2237 | 0 | 0 | 1 | 2237 | 236152818 | 236150582 | 0.000000e+00 | 4132.0 |
1 | TraesCS3B01G202000 | chr3B | 76.654 | 257 | 52 | 6 | 1 | 250 | 237136080 | 237136335 | 3.880000e-28 | 135.0 |
2 | TraesCS3B01G202000 | chr3A | 92.337 | 1592 | 88 | 16 | 447 | 2014 | 168832190 | 168833771 | 0.000000e+00 | 2233.0 |
3 | TraesCS3B01G202000 | chr3A | 85.897 | 78 | 10 | 1 | 173 | 250 | 547400739 | 547400815 | 5.120000e-12 | 82.4 |
4 | TraesCS3B01G202000 | chr3D | 95.098 | 1020 | 44 | 4 | 458 | 1475 | 159435775 | 159434760 | 0.000000e+00 | 1602.0 |
5 | TraesCS3B01G202000 | chr3D | 85.502 | 607 | 60 | 18 | 1431 | 2017 | 159434762 | 159434164 | 1.900000e-170 | 608.0 |
6 | TraesCS3B01G202000 | chrUn | 98.655 | 223 | 3 | 0 | 2015 | 2237 | 441527007 | 441527229 | 1.610000e-106 | 396.0 |
7 | TraesCS3B01G202000 | chr6B | 98.222 | 225 | 4 | 0 | 2013 | 2237 | 140674912 | 140675136 | 5.790000e-106 | 394.0 |
8 | TraesCS3B01G202000 | chr6B | 98.649 | 222 | 3 | 0 | 2016 | 2237 | 237138444 | 237138665 | 5.790000e-106 | 394.0 |
9 | TraesCS3B01G202000 | chr6B | 98.206 | 223 | 4 | 0 | 2015 | 2237 | 378206014 | 378206236 | 7.490000e-105 | 390.0 |
10 | TraesCS3B01G202000 | chr6B | 98.206 | 223 | 4 | 0 | 2015 | 2237 | 427030828 | 427030606 | 7.490000e-105 | 390.0 |
11 | TraesCS3B01G202000 | chr4B | 98.649 | 222 | 3 | 0 | 2016 | 2237 | 217743818 | 217744039 | 5.790000e-106 | 394.0 |
12 | TraesCS3B01G202000 | chr1A | 97.034 | 236 | 3 | 4 | 2005 | 2237 | 396451391 | 396451625 | 5.790000e-106 | 394.0 |
13 | TraesCS3B01G202000 | chr7A | 97.391 | 230 | 4 | 2 | 2010 | 2237 | 63365838 | 63366067 | 7.490000e-105 | 390.0 |
14 | TraesCS3B01G202000 | chr6A | 97.368 | 228 | 6 | 0 | 2010 | 2237 | 611837866 | 611837639 | 2.690000e-104 | 388.0 |
15 | TraesCS3B01G202000 | chr6A | 76.437 | 174 | 28 | 12 | 84 | 250 | 14098199 | 14098032 | 5.120000e-12 | 82.4 |
16 | TraesCS3B01G202000 | chr2A | 82.397 | 267 | 29 | 5 | 1 | 250 | 190313750 | 190314015 | 1.350000e-52 | 217.0 |
17 | TraesCS3B01G202000 | chr7D | 81.273 | 267 | 33 | 8 | 1 | 250 | 453288806 | 453288540 | 1.350000e-47 | 200.0 |
18 | TraesCS3B01G202000 | chr7D | 79.848 | 263 | 28 | 7 | 1 | 239 | 406521872 | 406522133 | 3.820000e-38 | 169.0 |
19 | TraesCS3B01G202000 | chr7B | 80.224 | 268 | 35 | 6 | 1 | 250 | 477430305 | 477430038 | 3.790000e-43 | 185.0 |
20 | TraesCS3B01G202000 | chr1B | 80.469 | 256 | 38 | 8 | 3 | 250 | 663041886 | 663042137 | 3.790000e-43 | 185.0 |
21 | TraesCS3B01G202000 | chr5A | 83.254 | 209 | 26 | 5 | 35 | 235 | 575172572 | 575172365 | 1.360000e-42 | 183.0 |
22 | TraesCS3B01G202000 | chr2D | 79.926 | 269 | 33 | 9 | 1 | 250 | 158245235 | 158245501 | 6.350000e-41 | 178.0 |
23 | TraesCS3B01G202000 | chr2D | 81.690 | 213 | 29 | 4 | 35 | 239 | 186966210 | 186966420 | 3.820000e-38 | 169.0 |
24 | TraesCS3B01G202000 | chr2B | 84.783 | 138 | 18 | 3 | 12 | 149 | 729057107 | 729056973 | 3.880000e-28 | 135.0 |
25 | TraesCS3B01G202000 | chr2B | 77.215 | 158 | 29 | 6 | 1 | 158 | 656978961 | 656978811 | 3.960000e-13 | 86.1 |
26 | TraesCS3B01G202000 | chr2B | 97.561 | 41 | 1 | 0 | 3 | 43 | 656991989 | 656991949 | 1.110000e-08 | 71.3 |
27 | TraesCS3B01G202000 | chr2B | 95.349 | 43 | 2 | 0 | 1 | 43 | 656979128 | 656979086 | 3.990000e-08 | 69.4 |
28 | TraesCS3B01G202000 | chr1D | 89.041 | 73 | 7 | 1 | 178 | 250 | 100453382 | 100453311 | 3.060000e-14 | 89.8 |
29 | TraesCS3B01G202000 | chr1D | 87.179 | 78 | 9 | 1 | 173 | 250 | 469097852 | 469097928 | 1.100000e-13 | 87.9 |
30 | TraesCS3B01G202000 | chr1D | 87.179 | 78 | 9 | 1 | 173 | 250 | 469098471 | 469098547 | 1.100000e-13 | 87.9 |
31 | TraesCS3B01G202000 | chr5D | 84.615 | 78 | 11 | 1 | 173 | 250 | 400267297 | 400267221 | 2.380000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G202000 | chr3B | 236150582 | 236152818 | 2236 | True | 4132 | 4132 | 100.000 | 1 | 2237 | 1 | chr3B.!!$R1 | 2236 |
1 | TraesCS3B01G202000 | chr3A | 168832190 | 168833771 | 1581 | False | 2233 | 2233 | 92.337 | 447 | 2014 | 1 | chr3A.!!$F1 | 1567 |
2 | TraesCS3B01G202000 | chr3D | 159434164 | 159435775 | 1611 | True | 1105 | 1602 | 90.300 | 458 | 2017 | 2 | chr3D.!!$R1 | 1559 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
425 | 426 | 0.179067 | GGGGATATGCCGACGTCAAA | 60.179 | 55.0 | 17.16 | 0.0 | 37.63 | 2.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1811 | 1881 | 0.033109 | GGGCTTTTAGATGGGCTGGT | 60.033 | 55.0 | 0.0 | 0.0 | 0.0 | 4.0 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 4.899239 | GAGGCGGCGGAGGTGATG | 62.899 | 72.222 | 9.78 | 0.00 | 0.00 | 3.07 |
34 | 35 | 4.873129 | CGGAGGTGATGCCGGACG | 62.873 | 72.222 | 5.05 | 0.00 | 43.67 | 4.79 |
35 | 36 | 3.458163 | GGAGGTGATGCCGGACGA | 61.458 | 66.667 | 5.05 | 0.00 | 43.70 | 4.20 |
36 | 37 | 2.105128 | GAGGTGATGCCGGACGAG | 59.895 | 66.667 | 5.05 | 0.00 | 43.70 | 4.18 |
37 | 38 | 3.432051 | GAGGTGATGCCGGACGAGG | 62.432 | 68.421 | 5.05 | 0.00 | 43.70 | 4.63 |
64 | 65 | 4.488136 | TTGCGGCATCGAGGGCAT | 62.488 | 61.111 | 23.63 | 0.00 | 39.00 | 4.40 |
65 | 66 | 4.916293 | TGCGGCATCGAGGGCATC | 62.916 | 66.667 | 23.63 | 14.28 | 39.00 | 3.91 |
73 | 74 | 2.280389 | CGAGGGCATCGTCCATGG | 60.280 | 66.667 | 14.15 | 4.97 | 46.62 | 3.66 |
78 | 79 | 3.643978 | GCATCGTCCATGGCGAGC | 61.644 | 66.667 | 27.05 | 24.67 | 41.83 | 5.03 |
79 | 80 | 2.202919 | CATCGTCCATGGCGAGCA | 60.203 | 61.111 | 27.05 | 12.12 | 41.83 | 4.26 |
80 | 81 | 2.107750 | ATCGTCCATGGCGAGCAG | 59.892 | 61.111 | 27.05 | 8.79 | 41.83 | 4.24 |
108 | 109 | 4.176752 | GAGCGGGCGGGAGGATTT | 62.177 | 66.667 | 0.00 | 0.00 | 0.00 | 2.17 |
109 | 110 | 3.699134 | GAGCGGGCGGGAGGATTTT | 62.699 | 63.158 | 0.00 | 0.00 | 0.00 | 1.82 |
110 | 111 | 2.754254 | GCGGGCGGGAGGATTTTT | 60.754 | 61.111 | 0.00 | 0.00 | 0.00 | 1.94 |
111 | 112 | 3.063743 | GCGGGCGGGAGGATTTTTG | 62.064 | 63.158 | 0.00 | 0.00 | 0.00 | 2.44 |
112 | 113 | 1.377987 | CGGGCGGGAGGATTTTTGA | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
113 | 114 | 0.963355 | CGGGCGGGAGGATTTTTGAA | 60.963 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
114 | 115 | 1.262417 | GGGCGGGAGGATTTTTGAAA | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
115 | 116 | 1.621317 | GGGCGGGAGGATTTTTGAAAA | 59.379 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
116 | 117 | 2.353704 | GGGCGGGAGGATTTTTGAAAAG | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
117 | 118 | 2.353704 | GGCGGGAGGATTTTTGAAAAGG | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
118 | 119 | 2.299013 | GCGGGAGGATTTTTGAAAAGGT | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
119 | 120 | 3.860754 | GCGGGAGGATTTTTGAAAAGGTG | 60.861 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
120 | 121 | 3.320826 | CGGGAGGATTTTTGAAAAGGTGT | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
121 | 122 | 4.521256 | CGGGAGGATTTTTGAAAAGGTGTA | 59.479 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
122 | 123 | 5.335661 | CGGGAGGATTTTTGAAAAGGTGTAG | 60.336 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
123 | 124 | 5.047306 | GGGAGGATTTTTGAAAAGGTGTAGG | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
124 | 125 | 5.773176 | GGAGGATTTTTGAAAAGGTGTAGGA | 59.227 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
125 | 126 | 6.266786 | GGAGGATTTTTGAAAAGGTGTAGGAA | 59.733 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
126 | 127 | 7.201965 | GGAGGATTTTTGAAAAGGTGTAGGAAA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
127 | 128 | 8.084985 | AGGATTTTTGAAAAGGTGTAGGAAAA | 57.915 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
128 | 129 | 8.713971 | AGGATTTTTGAAAAGGTGTAGGAAAAT | 58.286 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
129 | 130 | 8.773645 | GGATTTTTGAAAAGGTGTAGGAAAATG | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
130 | 131 | 8.675705 | ATTTTTGAAAAGGTGTAGGAAAATGG | 57.324 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
131 | 132 | 6.800072 | TTTGAAAAGGTGTAGGAAAATGGT | 57.200 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
132 | 133 | 5.782893 | TGAAAAGGTGTAGGAAAATGGTG | 57.217 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
133 | 134 | 4.586841 | TGAAAAGGTGTAGGAAAATGGTGG | 59.413 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
134 | 135 | 4.463050 | AAAGGTGTAGGAAAATGGTGGA | 57.537 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
135 | 136 | 4.675063 | AAGGTGTAGGAAAATGGTGGAT | 57.325 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
136 | 137 | 3.968265 | AGGTGTAGGAAAATGGTGGATG | 58.032 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
137 | 138 | 2.427095 | GGTGTAGGAAAATGGTGGATGC | 59.573 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
138 | 139 | 3.356290 | GTGTAGGAAAATGGTGGATGCT | 58.644 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
139 | 140 | 3.763897 | GTGTAGGAAAATGGTGGATGCTT | 59.236 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
140 | 141 | 4.220602 | GTGTAGGAAAATGGTGGATGCTTT | 59.779 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
141 | 142 | 3.967332 | AGGAAAATGGTGGATGCTTTG | 57.033 | 42.857 | 0.00 | 0.00 | 0.00 | 2.77 |
142 | 143 | 2.027837 | AGGAAAATGGTGGATGCTTTGC | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
143 | 144 | 2.349590 | GAAAATGGTGGATGCTTTGCC | 58.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
144 | 145 | 1.350071 | AAATGGTGGATGCTTTGCCA | 58.650 | 45.000 | 0.00 | 0.00 | 0.00 | 4.92 |
147 | 148 | 2.568090 | GTGGATGCTTTGCCACCG | 59.432 | 61.111 | 0.00 | 0.00 | 46.91 | 4.94 |
148 | 149 | 1.971167 | GTGGATGCTTTGCCACCGA | 60.971 | 57.895 | 0.00 | 0.00 | 46.91 | 4.69 |
149 | 150 | 1.971167 | TGGATGCTTTGCCACCGAC | 60.971 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
150 | 151 | 1.675641 | GGATGCTTTGCCACCGACT | 60.676 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
151 | 152 | 0.392461 | GGATGCTTTGCCACCGACTA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
152 | 153 | 1.009829 | GATGCTTTGCCACCGACTAG | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
153 | 154 | 1.026718 | ATGCTTTGCCACCGACTAGC | 61.027 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
154 | 155 | 2.740714 | GCTTTGCCACCGACTAGCG | 61.741 | 63.158 | 0.00 | 0.00 | 40.47 | 4.26 |
166 | 167 | 3.265070 | CGACTAGCGGGTATAGTTGAC | 57.735 | 52.381 | 0.00 | 0.00 | 36.96 | 3.18 |
167 | 168 | 2.349249 | CGACTAGCGGGTATAGTTGACG | 60.349 | 54.545 | 0.00 | 0.00 | 36.96 | 4.35 |
170 | 171 | 3.609258 | CGGGTATAGTTGACGCGC | 58.391 | 61.111 | 5.73 | 0.00 | 44.56 | 6.86 |
171 | 172 | 2.290789 | CGGGTATAGTTGACGCGCG | 61.291 | 63.158 | 30.96 | 30.96 | 44.56 | 6.86 |
172 | 173 | 1.947642 | GGGTATAGTTGACGCGCGG | 60.948 | 63.158 | 35.22 | 16.31 | 0.00 | 6.46 |
173 | 174 | 2.583164 | GGTATAGTTGACGCGCGGC | 61.583 | 63.158 | 35.22 | 34.04 | 0.00 | 6.53 |
201 | 202 | 4.400109 | GTCTCGTGTCCGCGCTGA | 62.400 | 66.667 | 5.56 | 0.00 | 0.00 | 4.26 |
202 | 203 | 4.400109 | TCTCGTGTCCGCGCTGAC | 62.400 | 66.667 | 23.20 | 23.20 | 35.77 | 3.51 |
213 | 214 | 2.787249 | CGCTGACGCAAATGAGGG | 59.213 | 61.111 | 0.00 | 0.00 | 35.30 | 4.30 |
214 | 215 | 2.034879 | CGCTGACGCAAATGAGGGT | 61.035 | 57.895 | 0.00 | 0.00 | 37.38 | 4.34 |
220 | 221 | 3.575965 | GACGCAAATGAGGGTCAAAAT | 57.424 | 42.857 | 9.18 | 0.00 | 46.92 | 1.82 |
221 | 222 | 3.913089 | GACGCAAATGAGGGTCAAAATT | 58.087 | 40.909 | 9.18 | 0.00 | 46.92 | 1.82 |
222 | 223 | 3.652274 | ACGCAAATGAGGGTCAAAATTG | 58.348 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
223 | 224 | 2.995258 | CGCAAATGAGGGTCAAAATTGG | 59.005 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
224 | 225 | 3.337358 | GCAAATGAGGGTCAAAATTGGG | 58.663 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
225 | 226 | 3.337358 | CAAATGAGGGTCAAAATTGGGC | 58.663 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
226 | 227 | 1.571955 | ATGAGGGTCAAAATTGGGCC | 58.428 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
227 | 228 | 0.897863 | TGAGGGTCAAAATTGGGCCG | 60.898 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
228 | 229 | 0.610785 | GAGGGTCAAAATTGGGCCGA | 60.611 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
229 | 230 | 0.611896 | AGGGTCAAAATTGGGCCGAG | 60.612 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
230 | 231 | 0.610785 | GGGTCAAAATTGGGCCGAGA | 60.611 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
231 | 232 | 1.253100 | GGTCAAAATTGGGCCGAGAA | 58.747 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
232 | 233 | 1.824852 | GGTCAAAATTGGGCCGAGAAT | 59.175 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
233 | 234 | 2.417243 | GGTCAAAATTGGGCCGAGAATG | 60.417 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
234 | 235 | 1.824230 | TCAAAATTGGGCCGAGAATGG | 59.176 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
235 | 236 | 1.824230 | CAAAATTGGGCCGAGAATGGA | 59.176 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
236 | 237 | 2.431782 | CAAAATTGGGCCGAGAATGGAT | 59.568 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
237 | 238 | 1.986882 | AATTGGGCCGAGAATGGATC | 58.013 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
238 | 239 | 0.250467 | ATTGGGCCGAGAATGGATCG | 60.250 | 55.000 | 0.00 | 0.00 | 39.86 | 3.69 |
244 | 245 | 2.892305 | CGAGAATGGATCGGCAGAC | 58.108 | 57.895 | 0.00 | 0.00 | 36.54 | 3.51 |
245 | 246 | 0.936764 | CGAGAATGGATCGGCAGACG | 60.937 | 60.000 | 0.00 | 0.00 | 46.11 | 4.18 |
246 | 247 | 0.598680 | GAGAATGGATCGGCAGACGG | 60.599 | 60.000 | 0.00 | 0.00 | 44.45 | 4.79 |
247 | 248 | 1.043116 | AGAATGGATCGGCAGACGGA | 61.043 | 55.000 | 0.00 | 0.00 | 44.45 | 4.69 |
248 | 249 | 0.876342 | GAATGGATCGGCAGACGGAC | 60.876 | 60.000 | 0.00 | 0.00 | 44.45 | 4.79 |
270 | 271 | 4.337060 | GTCCGCGGCAACCCAAAC | 62.337 | 66.667 | 23.51 | 6.98 | 0.00 | 2.93 |
271 | 272 | 4.877619 | TCCGCGGCAACCCAAACA | 62.878 | 61.111 | 23.51 | 0.00 | 0.00 | 2.83 |
272 | 273 | 4.341502 | CCGCGGCAACCCAAACAG | 62.342 | 66.667 | 14.67 | 0.00 | 0.00 | 3.16 |
273 | 274 | 3.283684 | CGCGGCAACCCAAACAGA | 61.284 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
274 | 275 | 2.335011 | GCGGCAACCCAAACAGAC | 59.665 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
275 | 276 | 2.637025 | CGGCAACCCAAACAGACG | 59.363 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
276 | 277 | 2.903547 | CGGCAACCCAAACAGACGG | 61.904 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
292 | 293 | 3.818787 | GGGCGCGGACGAACTCTA | 61.819 | 66.667 | 8.83 | 0.00 | 43.93 | 2.43 |
293 | 294 | 2.180017 | GGCGCGGACGAACTCTAA | 59.820 | 61.111 | 8.83 | 0.00 | 43.93 | 2.10 |
294 | 295 | 2.157073 | GGCGCGGACGAACTCTAAC | 61.157 | 63.158 | 8.83 | 0.00 | 43.93 | 2.34 |
295 | 296 | 2.157073 | GCGCGGACGAACTCTAACC | 61.157 | 63.158 | 8.83 | 0.00 | 43.93 | 2.85 |
296 | 297 | 1.866496 | CGCGGACGAACTCTAACCG | 60.866 | 63.158 | 0.00 | 0.00 | 43.93 | 4.44 |
297 | 298 | 1.211190 | GCGGACGAACTCTAACCGT | 59.789 | 57.895 | 0.00 | 0.00 | 44.48 | 4.83 |
301 | 302 | 2.935481 | GACGAACTCTAACCGTCCAT | 57.065 | 50.000 | 0.00 | 0.00 | 44.67 | 3.41 |
302 | 303 | 2.527100 | GACGAACTCTAACCGTCCATG | 58.473 | 52.381 | 0.00 | 0.00 | 44.67 | 3.66 |
303 | 304 | 1.891150 | ACGAACTCTAACCGTCCATGT | 59.109 | 47.619 | 0.00 | 0.00 | 29.82 | 3.21 |
304 | 305 | 3.084039 | ACGAACTCTAACCGTCCATGTA | 58.916 | 45.455 | 0.00 | 0.00 | 29.82 | 2.29 |
305 | 306 | 3.119708 | ACGAACTCTAACCGTCCATGTAC | 60.120 | 47.826 | 0.00 | 0.00 | 29.82 | 2.90 |
306 | 307 | 3.432782 | GAACTCTAACCGTCCATGTACG | 58.567 | 50.000 | 3.50 | 3.50 | 42.49 | 3.67 |
307 | 308 | 2.440409 | ACTCTAACCGTCCATGTACGT | 58.560 | 47.619 | 10.08 | 0.00 | 41.27 | 3.57 |
308 | 309 | 2.421424 | ACTCTAACCGTCCATGTACGTC | 59.579 | 50.000 | 10.08 | 0.00 | 41.27 | 4.34 |
309 | 310 | 1.745087 | TCTAACCGTCCATGTACGTCC | 59.255 | 52.381 | 10.08 | 0.00 | 41.27 | 4.79 |
310 | 311 | 0.817013 | TAACCGTCCATGTACGTCCC | 59.183 | 55.000 | 10.08 | 0.00 | 41.27 | 4.46 |
311 | 312 | 1.891722 | AACCGTCCATGTACGTCCCC | 61.892 | 60.000 | 10.08 | 0.00 | 41.27 | 4.81 |
312 | 313 | 2.103538 | CGTCCATGTACGTCCCCG | 59.896 | 66.667 | 2.18 | 0.00 | 38.07 | 5.73 |
334 | 335 | 4.488126 | TTGCAAACAAGGAAAGAGATCG | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
335 | 336 | 2.226437 | TGCAAACAAGGAAAGAGATCGC | 59.774 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
336 | 337 | 2.726066 | GCAAACAAGGAAAGAGATCGCG | 60.726 | 50.000 | 0.00 | 0.00 | 0.00 | 5.87 |
337 | 338 | 1.726853 | AACAAGGAAAGAGATCGCGG | 58.273 | 50.000 | 6.13 | 0.00 | 0.00 | 6.46 |
338 | 339 | 0.741221 | ACAAGGAAAGAGATCGCGGC | 60.741 | 55.000 | 6.13 | 0.00 | 0.00 | 6.53 |
339 | 340 | 1.519455 | AAGGAAAGAGATCGCGGCG | 60.519 | 57.895 | 17.70 | 17.70 | 0.00 | 6.46 |
340 | 341 | 2.202756 | GGAAAGAGATCGCGGCGT | 60.203 | 61.111 | 22.90 | 9.76 | 0.00 | 5.68 |
341 | 342 | 1.065273 | GGAAAGAGATCGCGGCGTA | 59.935 | 57.895 | 22.90 | 9.59 | 0.00 | 4.42 |
342 | 343 | 0.318784 | GGAAAGAGATCGCGGCGTAT | 60.319 | 55.000 | 22.90 | 14.07 | 0.00 | 3.06 |
343 | 344 | 1.053811 | GAAAGAGATCGCGGCGTATC | 58.946 | 55.000 | 22.90 | 21.03 | 0.00 | 2.24 |
344 | 345 | 0.660595 | AAAGAGATCGCGGCGTATCG | 60.661 | 55.000 | 22.90 | 3.52 | 0.00 | 2.92 |
354 | 355 | 4.946411 | GCGTATCGCGAGGAAGAT | 57.054 | 55.556 | 16.66 | 0.00 | 44.55 | 2.40 |
356 | 357 | 2.327081 | GCGTATCGCGAGGAAGATAA | 57.673 | 50.000 | 16.66 | 0.00 | 44.55 | 1.75 |
357 | 358 | 2.243407 | GCGTATCGCGAGGAAGATAAG | 58.757 | 52.381 | 16.66 | 4.31 | 44.55 | 1.73 |
358 | 359 | 2.095869 | GCGTATCGCGAGGAAGATAAGA | 60.096 | 50.000 | 16.66 | 0.00 | 44.55 | 2.10 |
359 | 360 | 3.738399 | CGTATCGCGAGGAAGATAAGAG | 58.262 | 50.000 | 16.66 | 0.00 | 44.77 | 2.85 |
360 | 361 | 3.432592 | CGTATCGCGAGGAAGATAAGAGA | 59.567 | 47.826 | 16.66 | 0.00 | 44.77 | 3.10 |
361 | 362 | 4.093703 | CGTATCGCGAGGAAGATAAGAGAT | 59.906 | 45.833 | 16.66 | 0.00 | 44.77 | 2.75 |
362 | 363 | 3.906014 | TCGCGAGGAAGATAAGAGATG | 57.094 | 47.619 | 3.71 | 0.00 | 0.00 | 2.90 |
363 | 364 | 3.477530 | TCGCGAGGAAGATAAGAGATGA | 58.522 | 45.455 | 3.71 | 0.00 | 0.00 | 2.92 |
364 | 365 | 3.251245 | TCGCGAGGAAGATAAGAGATGAC | 59.749 | 47.826 | 3.71 | 0.00 | 0.00 | 3.06 |
365 | 366 | 3.560503 | GCGAGGAAGATAAGAGATGACG | 58.439 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
366 | 367 | 3.610585 | GCGAGGAAGATAAGAGATGACGG | 60.611 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
367 | 368 | 3.610585 | CGAGGAAGATAAGAGATGACGGC | 60.611 | 52.174 | 0.00 | 0.00 | 0.00 | 5.68 |
368 | 369 | 3.571590 | AGGAAGATAAGAGATGACGGCT | 58.428 | 45.455 | 0.00 | 0.00 | 0.00 | 5.52 |
369 | 370 | 3.572255 | AGGAAGATAAGAGATGACGGCTC | 59.428 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
370 | 371 | 3.305744 | GGAAGATAAGAGATGACGGCTCC | 60.306 | 52.174 | 0.00 | 0.00 | 32.82 | 4.70 |
371 | 372 | 3.237268 | AGATAAGAGATGACGGCTCCT | 57.763 | 47.619 | 0.00 | 0.00 | 32.82 | 3.69 |
372 | 373 | 3.571590 | AGATAAGAGATGACGGCTCCTT | 58.428 | 45.455 | 0.00 | 0.00 | 32.82 | 3.36 |
373 | 374 | 3.964031 | AGATAAGAGATGACGGCTCCTTT | 59.036 | 43.478 | 0.00 | 0.00 | 32.82 | 3.11 |
374 | 375 | 2.682155 | AAGAGATGACGGCTCCTTTC | 57.318 | 50.000 | 0.00 | 0.00 | 32.82 | 2.62 |
375 | 376 | 0.827368 | AGAGATGACGGCTCCTTTCC | 59.173 | 55.000 | 0.00 | 0.00 | 32.82 | 3.13 |
376 | 377 | 0.537188 | GAGATGACGGCTCCTTTCCA | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
377 | 378 | 0.539051 | AGATGACGGCTCCTTTCCAG | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
378 | 379 | 1.078143 | ATGACGGCTCCTTTCCAGC | 60.078 | 57.895 | 0.00 | 0.00 | 36.02 | 4.85 |
384 | 385 | 1.529309 | GCTCCTTTCCAGCCCTAGG | 59.471 | 63.158 | 0.06 | 0.06 | 0.00 | 3.02 |
406 | 407 | 4.465512 | GCCCACGCATGCAACGAG | 62.466 | 66.667 | 19.57 | 10.62 | 34.03 | 4.18 |
407 | 408 | 3.803082 | CCCACGCATGCAACGAGG | 61.803 | 66.667 | 19.57 | 18.04 | 40.42 | 4.63 |
408 | 409 | 3.803082 | CCACGCATGCAACGAGGG | 61.803 | 66.667 | 19.57 | 14.20 | 37.58 | 4.30 |
409 | 410 | 3.803082 | CACGCATGCAACGAGGGG | 61.803 | 66.667 | 19.57 | 0.50 | 0.00 | 4.79 |
410 | 411 | 4.015406 | ACGCATGCAACGAGGGGA | 62.015 | 61.111 | 19.57 | 0.00 | 0.00 | 4.81 |
411 | 412 | 2.514592 | CGCATGCAACGAGGGGAT | 60.515 | 61.111 | 19.57 | 0.00 | 0.00 | 3.85 |
412 | 413 | 1.227527 | CGCATGCAACGAGGGGATA | 60.228 | 57.895 | 19.57 | 0.00 | 0.00 | 2.59 |
413 | 414 | 0.603707 | CGCATGCAACGAGGGGATAT | 60.604 | 55.000 | 19.57 | 0.00 | 0.00 | 1.63 |
414 | 415 | 0.877071 | GCATGCAACGAGGGGATATG | 59.123 | 55.000 | 14.21 | 0.00 | 0.00 | 1.78 |
415 | 416 | 0.877071 | CATGCAACGAGGGGATATGC | 59.123 | 55.000 | 0.00 | 0.00 | 37.52 | 3.14 |
416 | 417 | 0.250901 | ATGCAACGAGGGGATATGCC | 60.251 | 55.000 | 4.31 | 4.31 | 36.20 | 4.40 |
417 | 418 | 1.961277 | GCAACGAGGGGATATGCCG | 60.961 | 63.158 | 7.23 | 0.00 | 37.63 | 5.69 |
418 | 419 | 1.745890 | CAACGAGGGGATATGCCGA | 59.254 | 57.895 | 7.23 | 0.00 | 37.63 | 5.54 |
419 | 420 | 0.600255 | CAACGAGGGGATATGCCGAC | 60.600 | 60.000 | 7.23 | 2.93 | 37.63 | 4.79 |
420 | 421 | 2.083835 | AACGAGGGGATATGCCGACG | 62.084 | 60.000 | 21.77 | 21.77 | 37.63 | 5.12 |
421 | 422 | 2.561956 | CGAGGGGATATGCCGACGT | 61.562 | 63.158 | 17.57 | 0.00 | 37.63 | 4.34 |
422 | 423 | 1.289380 | GAGGGGATATGCCGACGTC | 59.711 | 63.158 | 5.18 | 5.18 | 37.63 | 4.34 |
423 | 424 | 1.456892 | AGGGGATATGCCGACGTCA | 60.457 | 57.895 | 17.16 | 0.00 | 37.63 | 4.35 |
424 | 425 | 1.046472 | AGGGGATATGCCGACGTCAA | 61.046 | 55.000 | 17.16 | 0.18 | 37.63 | 3.18 |
425 | 426 | 0.179067 | GGGGATATGCCGACGTCAAA | 60.179 | 55.000 | 17.16 | 0.00 | 37.63 | 2.69 |
426 | 427 | 1.217882 | GGGATATGCCGACGTCAAAG | 58.782 | 55.000 | 17.16 | 4.57 | 37.63 | 2.77 |
427 | 428 | 1.217882 | GGATATGCCGACGTCAAAGG | 58.782 | 55.000 | 17.16 | 10.00 | 0.00 | 3.11 |
428 | 429 | 1.472728 | GGATATGCCGACGTCAAAGGT | 60.473 | 52.381 | 17.16 | 0.00 | 0.00 | 3.50 |
429 | 430 | 2.277084 | GATATGCCGACGTCAAAGGTT | 58.723 | 47.619 | 17.16 | 3.95 | 0.00 | 3.50 |
430 | 431 | 2.172851 | TATGCCGACGTCAAAGGTTT | 57.827 | 45.000 | 17.16 | 3.62 | 0.00 | 3.27 |
431 | 432 | 2.172851 | ATGCCGACGTCAAAGGTTTA | 57.827 | 45.000 | 17.16 | 0.91 | 0.00 | 2.01 |
432 | 433 | 1.219646 | TGCCGACGTCAAAGGTTTAC | 58.780 | 50.000 | 17.16 | 0.00 | 0.00 | 2.01 |
433 | 434 | 1.219646 | GCCGACGTCAAAGGTTTACA | 58.780 | 50.000 | 17.16 | 0.00 | 0.00 | 2.41 |
434 | 435 | 1.193874 | GCCGACGTCAAAGGTTTACAG | 59.806 | 52.381 | 17.16 | 0.00 | 0.00 | 2.74 |
435 | 436 | 2.476821 | CCGACGTCAAAGGTTTACAGT | 58.523 | 47.619 | 17.16 | 0.00 | 0.00 | 3.55 |
436 | 437 | 2.220133 | CCGACGTCAAAGGTTTACAGTG | 59.780 | 50.000 | 17.16 | 0.00 | 0.00 | 3.66 |
437 | 438 | 2.348218 | CGACGTCAAAGGTTTACAGTGC | 60.348 | 50.000 | 17.16 | 0.00 | 0.00 | 4.40 |
438 | 439 | 2.870411 | GACGTCAAAGGTTTACAGTGCT | 59.130 | 45.455 | 11.55 | 0.00 | 0.00 | 4.40 |
439 | 440 | 3.275999 | ACGTCAAAGGTTTACAGTGCTT | 58.724 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
440 | 441 | 4.444536 | ACGTCAAAGGTTTACAGTGCTTA | 58.555 | 39.130 | 0.00 | 0.00 | 0.00 | 3.09 |
441 | 442 | 4.877251 | ACGTCAAAGGTTTACAGTGCTTAA | 59.123 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
442 | 443 | 5.354792 | ACGTCAAAGGTTTACAGTGCTTAAA | 59.645 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
443 | 444 | 5.679792 | CGTCAAAGGTTTACAGTGCTTAAAC | 59.320 | 40.000 | 7.52 | 7.52 | 38.28 | 2.01 |
454 | 455 | 4.338400 | ACAGTGCTTAAACCAGAAGTTTCC | 59.662 | 41.667 | 0.00 | 0.00 | 45.85 | 3.13 |
455 | 456 | 3.564225 | AGTGCTTAAACCAGAAGTTTCCG | 59.436 | 43.478 | 0.00 | 0.00 | 45.85 | 4.30 |
472 | 473 | 2.512896 | GGAGGGCAGGGCATACAG | 59.487 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
499 | 500 | 1.665679 | CGTCCAATGAACGGATGAAGG | 59.334 | 52.381 | 0.00 | 0.00 | 41.36 | 3.46 |
512 | 513 | 1.989165 | GATGAAGGCGCACGATCTATC | 59.011 | 52.381 | 10.83 | 0.00 | 0.00 | 2.08 |
513 | 514 | 0.744281 | TGAAGGCGCACGATCTATCA | 59.256 | 50.000 | 10.83 | 1.02 | 0.00 | 2.15 |
514 | 515 | 1.136110 | TGAAGGCGCACGATCTATCAA | 59.864 | 47.619 | 10.83 | 0.00 | 0.00 | 2.57 |
515 | 516 | 2.224042 | TGAAGGCGCACGATCTATCAAT | 60.224 | 45.455 | 10.83 | 0.00 | 0.00 | 2.57 |
516 | 517 | 2.071688 | AGGCGCACGATCTATCAATC | 57.928 | 50.000 | 10.83 | 0.00 | 0.00 | 2.67 |
552 | 553 | 1.396996 | CCAATCCAATCAACGGACGAC | 59.603 | 52.381 | 0.00 | 0.00 | 34.69 | 4.34 |
566 | 569 | 3.587403 | GGACGACGAATTTGATTAGGC | 57.413 | 47.619 | 0.00 | 0.00 | 0.00 | 3.93 |
588 | 591 | 3.383546 | ACAACAGCATATTTACACGCG | 57.616 | 42.857 | 3.53 | 3.53 | 0.00 | 6.01 |
629 | 632 | 4.357918 | AGTAGAATCTGCACACAAGGTT | 57.642 | 40.909 | 0.46 | 0.00 | 0.00 | 3.50 |
918 | 932 | 2.104859 | CACCTGAGTGCATGGCTCG | 61.105 | 63.158 | 0.00 | 0.00 | 37.14 | 5.03 |
1024 | 1042 | 3.714001 | CCCTCCTGCTGCTGCTGA | 61.714 | 66.667 | 21.35 | 14.19 | 40.01 | 4.26 |
1126 | 1144 | 0.771127 | CCCAAACCCTCTGTTGGAGA | 59.229 | 55.000 | 4.00 | 0.00 | 44.45 | 3.71 |
1137 | 1155 | 2.711009 | TCTGTTGGAGAACAAGGGATGT | 59.289 | 45.455 | 0.00 | 0.00 | 46.82 | 3.06 |
1202 | 1220 | 4.431131 | CTTGCAGTGGCCCCGGAT | 62.431 | 66.667 | 0.73 | 0.00 | 40.13 | 4.18 |
1282 | 1301 | 3.446442 | AATGGAGTGCCTGTCAATCTT | 57.554 | 42.857 | 0.00 | 0.00 | 39.56 | 2.40 |
1329 | 1348 | 4.575885 | TCCAATGTAGTTCTTGCCTACAC | 58.424 | 43.478 | 2.64 | 0.00 | 45.40 | 2.90 |
1384 | 1403 | 3.391965 | TGTTGGTTGATTTCTTGCATGC | 58.608 | 40.909 | 11.82 | 11.82 | 0.00 | 4.06 |
1441 | 1460 | 7.624549 | TCTCACTGCCAATAAAACTCTATCTT | 58.375 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
1442 | 1461 | 8.758829 | TCTCACTGCCAATAAAACTCTATCTTA | 58.241 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
1547 | 1608 | 4.129380 | TCAACATTTCAGACAGGTGACAG | 58.871 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1666 | 1727 | 5.630121 | AGTATGTTCCCTGTGAATTGTGAA | 58.370 | 37.500 | 0.00 | 0.00 | 34.90 | 3.18 |
1807 | 1877 | 3.579534 | AGTACTCCGATCTGAGCCTAA | 57.420 | 47.619 | 13.51 | 0.00 | 35.72 | 2.69 |
1838 | 1911 | 2.358898 | CCATCTAAAAGCCCATTCACCG | 59.641 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1883 | 1956 | 0.462759 | GTTAGCCAGGCCAGTAGCTG | 60.463 | 60.000 | 8.22 | 0.04 | 43.05 | 4.24 |
1887 | 1960 | 2.816958 | CAGGCCAGTAGCTGCACG | 60.817 | 66.667 | 5.01 | 0.00 | 43.05 | 5.34 |
1905 | 1978 | 4.671549 | CGCACAAGCACAGCACCG | 62.672 | 66.667 | 0.00 | 0.00 | 42.27 | 4.94 |
1907 | 1980 | 3.585020 | CACAAGCACAGCACCGCA | 61.585 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
1941 | 2019 | 3.402681 | CCACACCGCTGGAGGGAT | 61.403 | 66.667 | 1.50 | 0.00 | 32.30 | 3.85 |
1947 | 2025 | 2.443394 | CCGCTGGAGGGATAAGCCA | 61.443 | 63.158 | 0.00 | 0.00 | 38.95 | 4.75 |
2025 | 2106 | 7.830201 | AGTCTACTTTATGATATACTCCCTCCG | 59.170 | 40.741 | 0.00 | 0.00 | 0.00 | 4.63 |
2026 | 2107 | 7.828223 | GTCTACTTTATGATATACTCCCTCCGA | 59.172 | 40.741 | 0.00 | 0.00 | 0.00 | 4.55 |
2027 | 2108 | 8.558312 | TCTACTTTATGATATACTCCCTCCGAT | 58.442 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
2028 | 2109 | 7.648039 | ACTTTATGATATACTCCCTCCGATC | 57.352 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2029 | 2110 | 6.608002 | ACTTTATGATATACTCCCTCCGATCC | 59.392 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
2030 | 2111 | 4.890499 | ATGATATACTCCCTCCGATCCT | 57.110 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
2031 | 2112 | 4.676799 | TGATATACTCCCTCCGATCCTT | 57.323 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
2032 | 2113 | 5.011982 | TGATATACTCCCTCCGATCCTTT | 57.988 | 43.478 | 0.00 | 0.00 | 0.00 | 3.11 |
2033 | 2114 | 5.403512 | TGATATACTCCCTCCGATCCTTTT | 58.596 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
2034 | 2115 | 5.844516 | TGATATACTCCCTCCGATCCTTTTT | 59.155 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2035 | 2116 | 7.014449 | TGATATACTCCCTCCGATCCTTTTTA | 58.986 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
2036 | 2117 | 3.908643 | ACTCCCTCCGATCCTTTTTAC | 57.091 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
2037 | 2118 | 3.451890 | ACTCCCTCCGATCCTTTTTACT | 58.548 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2038 | 2119 | 3.451540 | ACTCCCTCCGATCCTTTTTACTC | 59.548 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2039 | 2120 | 3.707102 | CTCCCTCCGATCCTTTTTACTCT | 59.293 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
2040 | 2121 | 3.451178 | TCCCTCCGATCCTTTTTACTCTG | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
2041 | 2122 | 3.198872 | CCTCCGATCCTTTTTACTCTGC | 58.801 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2042 | 2123 | 3.369471 | CCTCCGATCCTTTTTACTCTGCA | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
2043 | 2124 | 4.446371 | CTCCGATCCTTTTTACTCTGCAT | 58.554 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
2044 | 2125 | 5.453339 | CCTCCGATCCTTTTTACTCTGCATA | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2045 | 2126 | 6.174720 | TCCGATCCTTTTTACTCTGCATAT | 57.825 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
2046 | 2127 | 6.591935 | TCCGATCCTTTTTACTCTGCATATT | 58.408 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2047 | 2128 | 7.732025 | TCCGATCCTTTTTACTCTGCATATTA | 58.268 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2048 | 2129 | 7.872993 | TCCGATCCTTTTTACTCTGCATATTAG | 59.127 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2049 | 2130 | 7.118390 | CCGATCCTTTTTACTCTGCATATTAGG | 59.882 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
2050 | 2131 | 7.657761 | CGATCCTTTTTACTCTGCATATTAGGT | 59.342 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
2051 | 2132 | 9.343539 | GATCCTTTTTACTCTGCATATTAGGTT | 57.656 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
2052 | 2133 | 9.700831 | ATCCTTTTTACTCTGCATATTAGGTTT | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
2053 | 2134 | 8.956426 | TCCTTTTTACTCTGCATATTAGGTTTG | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
2054 | 2135 | 8.739972 | CCTTTTTACTCTGCATATTAGGTTTGT | 58.260 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2055 | 2136 | 9.774742 | CTTTTTACTCTGCATATTAGGTTTGTC | 57.225 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2056 | 2137 | 9.515226 | TTTTTACTCTGCATATTAGGTTTGTCT | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
2057 | 2138 | 8.492673 | TTTACTCTGCATATTAGGTTTGTCTG | 57.507 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
2058 | 2139 | 6.299805 | ACTCTGCATATTAGGTTTGTCTGA | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
2059 | 2140 | 6.711277 | ACTCTGCATATTAGGTTTGTCTGAA | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2060 | 2141 | 6.820656 | ACTCTGCATATTAGGTTTGTCTGAAG | 59.179 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2061 | 2142 | 6.711277 | TCTGCATATTAGGTTTGTCTGAAGT | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2062 | 2143 | 6.818644 | TCTGCATATTAGGTTTGTCTGAAGTC | 59.181 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2063 | 2144 | 6.472016 | TGCATATTAGGTTTGTCTGAAGTCA | 58.528 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2064 | 2145 | 6.939730 | TGCATATTAGGTTTGTCTGAAGTCAA | 59.060 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2065 | 2146 | 7.611467 | TGCATATTAGGTTTGTCTGAAGTCAAT | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2066 | 2147 | 8.125448 | GCATATTAGGTTTGTCTGAAGTCAATC | 58.875 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
2067 | 2148 | 9.388506 | CATATTAGGTTTGTCTGAAGTCAATCT | 57.611 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2068 | 2149 | 7.913674 | ATTAGGTTTGTCTGAAGTCAATCTC | 57.086 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2069 | 2150 | 5.296151 | AGGTTTGTCTGAAGTCAATCTCA | 57.704 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
2070 | 2151 | 5.874093 | AGGTTTGTCTGAAGTCAATCTCAT | 58.126 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2071 | 2152 | 5.936956 | AGGTTTGTCTGAAGTCAATCTCATC | 59.063 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2072 | 2153 | 5.123027 | GGTTTGTCTGAAGTCAATCTCATCC | 59.877 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2073 | 2154 | 5.488262 | TTGTCTGAAGTCAATCTCATCCA | 57.512 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2074 | 2155 | 5.488262 | TGTCTGAAGTCAATCTCATCCAA | 57.512 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
2075 | 2156 | 5.240891 | TGTCTGAAGTCAATCTCATCCAAC | 58.759 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
2076 | 2157 | 5.012458 | TGTCTGAAGTCAATCTCATCCAACT | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2077 | 2158 | 5.936956 | GTCTGAAGTCAATCTCATCCAACTT | 59.063 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2078 | 2159 | 6.429385 | GTCTGAAGTCAATCTCATCCAACTTT | 59.571 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2079 | 2160 | 6.429078 | TCTGAAGTCAATCTCATCCAACTTTG | 59.571 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
2080 | 2161 | 6.298361 | TGAAGTCAATCTCATCCAACTTTGA | 58.702 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2081 | 2162 | 6.205464 | TGAAGTCAATCTCATCCAACTTTGAC | 59.795 | 38.462 | 5.67 | 5.67 | 41.88 | 3.18 |
2082 | 2163 | 5.006386 | AGTCAATCTCATCCAACTTTGACC | 58.994 | 41.667 | 9.31 | 0.00 | 42.29 | 4.02 |
2083 | 2164 | 4.761739 | GTCAATCTCATCCAACTTTGACCA | 59.238 | 41.667 | 0.00 | 0.00 | 37.86 | 4.02 |
2084 | 2165 | 5.241506 | GTCAATCTCATCCAACTTTGACCAA | 59.758 | 40.000 | 0.00 | 0.00 | 37.86 | 3.67 |
2085 | 2166 | 5.474532 | TCAATCTCATCCAACTTTGACCAAG | 59.525 | 40.000 | 0.00 | 0.00 | 38.64 | 3.61 |
2126 | 2207 | 8.810652 | ATTGACATTTACATAACAACACCAAC | 57.189 | 30.769 | 0.00 | 0.00 | 0.00 | 3.77 |
2127 | 2208 | 7.334844 | TGACATTTACATAACAACACCAACA | 57.665 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2128 | 2209 | 7.946207 | TGACATTTACATAACAACACCAACAT | 58.054 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
2129 | 2210 | 8.079203 | TGACATTTACATAACAACACCAACATC | 58.921 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2130 | 2211 | 7.946207 | ACATTTACATAACAACACCAACATCA | 58.054 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
2131 | 2212 | 8.584157 | ACATTTACATAACAACACCAACATCAT | 58.416 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
2132 | 2213 | 9.421806 | CATTTACATAACAACACCAACATCATT | 57.578 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2135 | 2216 | 7.994425 | ACATAACAACACCAACATCATTAGA | 57.006 | 32.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2136 | 2217 | 8.579850 | ACATAACAACACCAACATCATTAGAT | 57.420 | 30.769 | 0.00 | 0.00 | 33.87 | 1.98 |
2137 | 2218 | 9.023962 | ACATAACAACACCAACATCATTAGATT | 57.976 | 29.630 | 0.00 | 0.00 | 30.20 | 2.40 |
2138 | 2219 | 9.507280 | CATAACAACACCAACATCATTAGATTC | 57.493 | 33.333 | 0.00 | 0.00 | 30.20 | 2.52 |
2139 | 2220 | 7.523293 | AACAACACCAACATCATTAGATTCA | 57.477 | 32.000 | 0.00 | 0.00 | 30.20 | 2.57 |
2140 | 2221 | 7.707624 | ACAACACCAACATCATTAGATTCAT | 57.292 | 32.000 | 0.00 | 0.00 | 30.20 | 2.57 |
2141 | 2222 | 7.765307 | ACAACACCAACATCATTAGATTCATC | 58.235 | 34.615 | 0.00 | 0.00 | 30.20 | 2.92 |
2142 | 2223 | 7.613022 | ACAACACCAACATCATTAGATTCATCT | 59.387 | 33.333 | 0.00 | 0.00 | 40.86 | 2.90 |
2143 | 2224 | 7.798596 | ACACCAACATCATTAGATTCATCTC | 57.201 | 36.000 | 0.00 | 0.00 | 38.32 | 2.75 |
2144 | 2225 | 6.481313 | ACACCAACATCATTAGATTCATCTCG | 59.519 | 38.462 | 0.00 | 0.00 | 38.32 | 4.04 |
2145 | 2226 | 5.994054 | ACCAACATCATTAGATTCATCTCGG | 59.006 | 40.000 | 0.00 | 0.00 | 38.32 | 4.63 |
2146 | 2227 | 6.183361 | ACCAACATCATTAGATTCATCTCGGA | 60.183 | 38.462 | 0.00 | 0.00 | 38.32 | 4.55 |
2147 | 2228 | 6.707608 | CCAACATCATTAGATTCATCTCGGAA | 59.292 | 38.462 | 0.00 | 0.00 | 38.32 | 4.30 |
2148 | 2229 | 7.389884 | CCAACATCATTAGATTCATCTCGGAAT | 59.610 | 37.037 | 0.00 | 0.00 | 40.10 | 3.01 |
2149 | 2230 | 9.428097 | CAACATCATTAGATTCATCTCGGAATA | 57.572 | 33.333 | 0.00 | 0.00 | 37.61 | 1.75 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 4.899239 | CATCACCTCCGCCGCCTC | 62.899 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
17 | 18 | 4.873129 | CGTCCGGCATCACCTCCG | 62.873 | 72.222 | 0.00 | 0.00 | 44.89 | 4.63 |
18 | 19 | 3.432051 | CTCGTCCGGCATCACCTCC | 62.432 | 68.421 | 0.00 | 0.00 | 35.61 | 4.30 |
19 | 20 | 2.105128 | CTCGTCCGGCATCACCTC | 59.895 | 66.667 | 0.00 | 0.00 | 35.61 | 3.85 |
20 | 21 | 3.461773 | CCTCGTCCGGCATCACCT | 61.462 | 66.667 | 0.00 | 0.00 | 35.61 | 4.00 |
47 | 48 | 4.488136 | ATGCCCTCGATGCCGCAA | 62.488 | 61.111 | 0.00 | 0.00 | 34.38 | 4.85 |
48 | 49 | 4.916293 | GATGCCCTCGATGCCGCA | 62.916 | 66.667 | 0.00 | 0.00 | 35.37 | 5.69 |
57 | 58 | 2.592861 | GCCATGGACGATGCCCTC | 60.593 | 66.667 | 18.40 | 0.00 | 0.00 | 4.30 |
58 | 59 | 4.552365 | CGCCATGGACGATGCCCT | 62.552 | 66.667 | 18.40 | 0.00 | 0.00 | 5.19 |
59 | 60 | 4.545706 | TCGCCATGGACGATGCCC | 62.546 | 66.667 | 22.05 | 0.02 | 33.96 | 5.36 |
60 | 61 | 2.969238 | CTCGCCATGGACGATGCC | 60.969 | 66.667 | 24.74 | 2.89 | 39.12 | 4.40 |
61 | 62 | 3.643978 | GCTCGCCATGGACGATGC | 61.644 | 66.667 | 24.74 | 23.61 | 39.12 | 3.91 |
62 | 63 | 2.202919 | TGCTCGCCATGGACGATG | 60.203 | 61.111 | 24.74 | 19.84 | 39.12 | 3.84 |
63 | 64 | 2.107750 | CTGCTCGCCATGGACGAT | 59.892 | 61.111 | 24.74 | 0.00 | 39.12 | 3.73 |
64 | 65 | 4.819761 | GCTGCTCGCCATGGACGA | 62.820 | 66.667 | 23.59 | 23.59 | 38.02 | 4.20 |
65 | 66 | 4.827087 | AGCTGCTCGCCATGGACG | 62.827 | 66.667 | 18.40 | 18.60 | 40.39 | 4.79 |
66 | 67 | 3.200593 | CAGCTGCTCGCCATGGAC | 61.201 | 66.667 | 18.40 | 5.97 | 40.39 | 4.02 |
67 | 68 | 4.478371 | CCAGCTGCTCGCCATGGA | 62.478 | 66.667 | 18.40 | 0.00 | 36.35 | 3.41 |
69 | 70 | 4.478371 | TCCCAGCTGCTCGCCATG | 62.478 | 66.667 | 8.66 | 0.00 | 40.39 | 3.66 |
70 | 71 | 4.172512 | CTCCCAGCTGCTCGCCAT | 62.173 | 66.667 | 8.66 | 0.00 | 40.39 | 4.40 |
91 | 92 | 3.699134 | AAAATCCTCCCGCCCGCTC | 62.699 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
92 | 93 | 3.282374 | AAAAATCCTCCCGCCCGCT | 62.282 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
93 | 94 | 2.754254 | AAAAATCCTCCCGCCCGC | 60.754 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
94 | 95 | 0.963355 | TTCAAAAATCCTCCCGCCCG | 60.963 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
95 | 96 | 1.262417 | TTTCAAAAATCCTCCCGCCC | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
96 | 97 | 2.353704 | CCTTTTCAAAAATCCTCCCGCC | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
97 | 98 | 2.299013 | ACCTTTTCAAAAATCCTCCCGC | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
98 | 99 | 3.320826 | ACACCTTTTCAAAAATCCTCCCG | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 5.14 |
99 | 100 | 4.955811 | ACACCTTTTCAAAAATCCTCCC | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
100 | 101 | 5.773176 | TCCTACACCTTTTCAAAAATCCTCC | 59.227 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
101 | 102 | 6.894339 | TCCTACACCTTTTCAAAAATCCTC | 57.106 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
102 | 103 | 7.669089 | TTTCCTACACCTTTTCAAAAATCCT | 57.331 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
103 | 104 | 8.773645 | CATTTTCCTACACCTTTTCAAAAATCC | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
104 | 105 | 8.773645 | CCATTTTCCTACACCTTTTCAAAAATC | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
105 | 106 | 8.271458 | ACCATTTTCCTACACCTTTTCAAAAAT | 58.729 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
106 | 107 | 7.550906 | CACCATTTTCCTACACCTTTTCAAAAA | 59.449 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
107 | 108 | 7.044798 | CACCATTTTCCTACACCTTTTCAAAA | 58.955 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
108 | 109 | 6.407525 | CCACCATTTTCCTACACCTTTTCAAA | 60.408 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
109 | 110 | 5.069781 | CCACCATTTTCCTACACCTTTTCAA | 59.930 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
110 | 111 | 4.586841 | CCACCATTTTCCTACACCTTTTCA | 59.413 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
111 | 112 | 4.830600 | TCCACCATTTTCCTACACCTTTTC | 59.169 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
112 | 113 | 4.810345 | TCCACCATTTTCCTACACCTTTT | 58.190 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
113 | 114 | 4.463050 | TCCACCATTTTCCTACACCTTT | 57.537 | 40.909 | 0.00 | 0.00 | 0.00 | 3.11 |
114 | 115 | 4.344104 | CATCCACCATTTTCCTACACCTT | 58.656 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
115 | 116 | 3.877735 | GCATCCACCATTTTCCTACACCT | 60.878 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
116 | 117 | 2.427095 | GCATCCACCATTTTCCTACACC | 59.573 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
117 | 118 | 3.356290 | AGCATCCACCATTTTCCTACAC | 58.644 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
118 | 119 | 3.737559 | AGCATCCACCATTTTCCTACA | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
119 | 120 | 4.747810 | CAAAGCATCCACCATTTTCCTAC | 58.252 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
120 | 121 | 3.195396 | GCAAAGCATCCACCATTTTCCTA | 59.805 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
121 | 122 | 2.027837 | GCAAAGCATCCACCATTTTCCT | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
122 | 123 | 2.349590 | GCAAAGCATCCACCATTTTCC | 58.650 | 47.619 | 0.00 | 0.00 | 0.00 | 3.13 |
123 | 124 | 2.289569 | TGGCAAAGCATCCACCATTTTC | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
124 | 125 | 1.698532 | TGGCAAAGCATCCACCATTTT | 59.301 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
125 | 126 | 1.002315 | GTGGCAAAGCATCCACCATTT | 59.998 | 47.619 | 0.00 | 0.00 | 45.26 | 2.32 |
126 | 127 | 0.609662 | GTGGCAAAGCATCCACCATT | 59.390 | 50.000 | 0.00 | 0.00 | 45.26 | 3.16 |
127 | 128 | 2.279842 | GTGGCAAAGCATCCACCAT | 58.720 | 52.632 | 0.00 | 0.00 | 45.26 | 3.55 |
128 | 129 | 3.776158 | GTGGCAAAGCATCCACCA | 58.224 | 55.556 | 0.00 | 0.00 | 45.26 | 4.17 |
131 | 132 | 1.971167 | GTCGGTGGCAAAGCATCCA | 60.971 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
132 | 133 | 0.392461 | TAGTCGGTGGCAAAGCATCC | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
133 | 134 | 1.009829 | CTAGTCGGTGGCAAAGCATC | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
134 | 135 | 1.026718 | GCTAGTCGGTGGCAAAGCAT | 61.027 | 55.000 | 0.00 | 0.00 | 31.47 | 3.79 |
135 | 136 | 1.671054 | GCTAGTCGGTGGCAAAGCA | 60.671 | 57.895 | 0.00 | 0.00 | 31.47 | 3.91 |
136 | 137 | 2.740714 | CGCTAGTCGGTGGCAAAGC | 61.741 | 63.158 | 0.00 | 0.00 | 31.47 | 3.51 |
137 | 138 | 3.474806 | CGCTAGTCGGTGGCAAAG | 58.525 | 61.111 | 0.00 | 0.00 | 31.47 | 2.77 |
146 | 147 | 2.349249 | CGTCAACTATACCCGCTAGTCG | 60.349 | 54.545 | 0.00 | 0.00 | 38.08 | 4.18 |
147 | 148 | 2.604132 | GCGTCAACTATACCCGCTAGTC | 60.604 | 54.545 | 0.00 | 0.00 | 41.06 | 2.59 |
148 | 149 | 1.336125 | GCGTCAACTATACCCGCTAGT | 59.664 | 52.381 | 0.00 | 0.00 | 41.06 | 2.57 |
149 | 150 | 1.662309 | CGCGTCAACTATACCCGCTAG | 60.662 | 57.143 | 0.00 | 0.00 | 42.01 | 3.42 |
150 | 151 | 0.308684 | CGCGTCAACTATACCCGCTA | 59.691 | 55.000 | 0.00 | 0.00 | 42.01 | 4.26 |
151 | 152 | 1.065273 | CGCGTCAACTATACCCGCT | 59.935 | 57.895 | 0.00 | 0.00 | 42.01 | 5.52 |
152 | 153 | 2.583164 | GCGCGTCAACTATACCCGC | 61.583 | 63.158 | 8.43 | 0.00 | 37.04 | 6.13 |
153 | 154 | 2.290789 | CGCGCGTCAACTATACCCG | 61.291 | 63.158 | 24.19 | 0.00 | 0.00 | 5.28 |
154 | 155 | 1.947642 | CCGCGCGTCAACTATACCC | 60.948 | 63.158 | 29.95 | 0.00 | 0.00 | 3.69 |
155 | 156 | 2.583164 | GCCGCGCGTCAACTATACC | 61.583 | 63.158 | 29.95 | 0.00 | 0.00 | 2.73 |
156 | 157 | 2.918641 | GCCGCGCGTCAACTATAC | 59.081 | 61.111 | 29.95 | 2.24 | 0.00 | 1.47 |
184 | 185 | 4.400109 | TCAGCGCGGACACGAGAC | 62.400 | 66.667 | 8.83 | 0.00 | 42.82 | 3.36 |
185 | 186 | 4.400109 | GTCAGCGCGGACACGAGA | 62.400 | 66.667 | 31.48 | 5.42 | 42.82 | 4.04 |
197 | 198 | 0.955428 | TGACCCTCATTTGCGTCAGC | 60.955 | 55.000 | 0.00 | 0.00 | 45.41 | 4.26 |
198 | 199 | 1.522668 | TTGACCCTCATTTGCGTCAG | 58.477 | 50.000 | 0.00 | 0.00 | 36.65 | 3.51 |
199 | 200 | 1.974265 | TTTGACCCTCATTTGCGTCA | 58.026 | 45.000 | 0.00 | 0.00 | 33.56 | 4.35 |
200 | 201 | 3.575965 | ATTTTGACCCTCATTTGCGTC | 57.424 | 42.857 | 0.00 | 0.00 | 0.00 | 5.19 |
201 | 202 | 3.554752 | CCAATTTTGACCCTCATTTGCGT | 60.555 | 43.478 | 0.00 | 0.00 | 0.00 | 5.24 |
202 | 203 | 2.995258 | CCAATTTTGACCCTCATTTGCG | 59.005 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
203 | 204 | 3.337358 | CCCAATTTTGACCCTCATTTGC | 58.663 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
204 | 205 | 3.337358 | GCCCAATTTTGACCCTCATTTG | 58.663 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
205 | 206 | 2.305635 | GGCCCAATTTTGACCCTCATTT | 59.694 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
206 | 207 | 1.908619 | GGCCCAATTTTGACCCTCATT | 59.091 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
207 | 208 | 1.571955 | GGCCCAATTTTGACCCTCAT | 58.428 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
208 | 209 | 0.897863 | CGGCCCAATTTTGACCCTCA | 60.898 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
209 | 210 | 0.610785 | TCGGCCCAATTTTGACCCTC | 60.611 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
210 | 211 | 0.611896 | CTCGGCCCAATTTTGACCCT | 60.612 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
211 | 212 | 0.610785 | TCTCGGCCCAATTTTGACCC | 60.611 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
212 | 213 | 1.253100 | TTCTCGGCCCAATTTTGACC | 58.747 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
213 | 214 | 2.417243 | CCATTCTCGGCCCAATTTTGAC | 60.417 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
214 | 215 | 1.824230 | CCATTCTCGGCCCAATTTTGA | 59.176 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
215 | 216 | 1.824230 | TCCATTCTCGGCCCAATTTTG | 59.176 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
216 | 217 | 2.230130 | TCCATTCTCGGCCCAATTTT | 57.770 | 45.000 | 0.00 | 0.00 | 0.00 | 1.82 |
217 | 218 | 2.310538 | GATCCATTCTCGGCCCAATTT | 58.689 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
218 | 219 | 1.815408 | CGATCCATTCTCGGCCCAATT | 60.815 | 52.381 | 0.00 | 0.00 | 32.58 | 2.32 |
219 | 220 | 0.250467 | CGATCCATTCTCGGCCCAAT | 60.250 | 55.000 | 0.00 | 0.00 | 32.58 | 3.16 |
220 | 221 | 1.146041 | CGATCCATTCTCGGCCCAA | 59.854 | 57.895 | 0.00 | 0.00 | 32.58 | 4.12 |
221 | 222 | 2.821685 | CGATCCATTCTCGGCCCA | 59.178 | 61.111 | 0.00 | 0.00 | 32.58 | 5.36 |
226 | 227 | 0.936764 | CGTCTGCCGATCCATTCTCG | 60.937 | 60.000 | 0.00 | 0.00 | 39.56 | 4.04 |
227 | 228 | 0.598680 | CCGTCTGCCGATCCATTCTC | 60.599 | 60.000 | 0.00 | 0.00 | 39.56 | 2.87 |
228 | 229 | 1.043116 | TCCGTCTGCCGATCCATTCT | 61.043 | 55.000 | 0.00 | 0.00 | 39.56 | 2.40 |
229 | 230 | 0.876342 | GTCCGTCTGCCGATCCATTC | 60.876 | 60.000 | 0.00 | 0.00 | 39.56 | 2.67 |
230 | 231 | 1.144057 | GTCCGTCTGCCGATCCATT | 59.856 | 57.895 | 0.00 | 0.00 | 39.56 | 3.16 |
231 | 232 | 2.815308 | GTCCGTCTGCCGATCCAT | 59.185 | 61.111 | 0.00 | 0.00 | 39.56 | 3.41 |
232 | 233 | 3.822192 | CGTCCGTCTGCCGATCCA | 61.822 | 66.667 | 0.00 | 0.00 | 39.56 | 3.41 |
253 | 254 | 4.337060 | GTTTGGGTTGCCGCGGAC | 62.337 | 66.667 | 33.48 | 19.85 | 0.00 | 4.79 |
254 | 255 | 4.877619 | TGTTTGGGTTGCCGCGGA | 62.878 | 61.111 | 33.48 | 11.82 | 0.00 | 5.54 |
255 | 256 | 4.341502 | CTGTTTGGGTTGCCGCGG | 62.342 | 66.667 | 24.05 | 24.05 | 0.00 | 6.46 |
256 | 257 | 3.283684 | TCTGTTTGGGTTGCCGCG | 61.284 | 61.111 | 0.00 | 0.00 | 0.00 | 6.46 |
257 | 258 | 2.335011 | GTCTGTTTGGGTTGCCGC | 59.665 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
258 | 259 | 2.637025 | CGTCTGTTTGGGTTGCCG | 59.363 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
259 | 260 | 2.561037 | CCCGTCTGTTTGGGTTGCC | 61.561 | 63.158 | 0.00 | 0.00 | 40.76 | 4.52 |
260 | 261 | 3.039134 | CCCGTCTGTTTGGGTTGC | 58.961 | 61.111 | 0.00 | 0.00 | 40.76 | 4.17 |
275 | 276 | 3.346631 | TTAGAGTTCGTCCGCGCCC | 62.347 | 63.158 | 0.00 | 0.00 | 38.14 | 6.13 |
276 | 277 | 2.157073 | GTTAGAGTTCGTCCGCGCC | 61.157 | 63.158 | 0.00 | 0.00 | 38.14 | 6.53 |
277 | 278 | 2.157073 | GGTTAGAGTTCGTCCGCGC | 61.157 | 63.158 | 0.00 | 0.00 | 38.14 | 6.86 |
278 | 279 | 1.866496 | CGGTTAGAGTTCGTCCGCG | 60.866 | 63.158 | 0.00 | 0.00 | 39.92 | 6.46 |
279 | 280 | 0.796113 | GACGGTTAGAGTTCGTCCGC | 60.796 | 60.000 | 0.00 | 0.00 | 44.96 | 5.54 |
280 | 281 | 3.302968 | GACGGTTAGAGTTCGTCCG | 57.697 | 57.895 | 0.00 | 0.00 | 44.96 | 4.79 |
283 | 284 | 1.891150 | ACATGGACGGTTAGAGTTCGT | 59.109 | 47.619 | 0.00 | 0.00 | 39.99 | 3.85 |
284 | 285 | 2.649331 | ACATGGACGGTTAGAGTTCG | 57.351 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
285 | 286 | 3.432782 | CGTACATGGACGGTTAGAGTTC | 58.567 | 50.000 | 23.17 | 0.00 | 39.19 | 3.01 |
286 | 287 | 3.498927 | CGTACATGGACGGTTAGAGTT | 57.501 | 47.619 | 23.17 | 0.00 | 39.19 | 3.01 |
306 | 307 | 1.104577 | TCCTTGTTTGCAACGGGGAC | 61.105 | 55.000 | 0.00 | 0.00 | 32.42 | 4.46 |
307 | 308 | 0.395862 | TTCCTTGTTTGCAACGGGGA | 60.396 | 50.000 | 0.00 | 1.91 | 34.45 | 4.81 |
308 | 309 | 0.461961 | TTTCCTTGTTTGCAACGGGG | 59.538 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
309 | 310 | 1.407258 | TCTTTCCTTGTTTGCAACGGG | 59.593 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
310 | 311 | 2.357637 | TCTCTTTCCTTGTTTGCAACGG | 59.642 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
311 | 312 | 3.691049 | TCTCTTTCCTTGTTTGCAACG | 57.309 | 42.857 | 0.00 | 0.00 | 0.00 | 4.10 |
312 | 313 | 4.222114 | CGATCTCTTTCCTTGTTTGCAAC | 58.778 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
313 | 314 | 3.304659 | GCGATCTCTTTCCTTGTTTGCAA | 60.305 | 43.478 | 0.00 | 0.00 | 0.00 | 4.08 |
314 | 315 | 2.226437 | GCGATCTCTTTCCTTGTTTGCA | 59.774 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
315 | 316 | 2.726066 | CGCGATCTCTTTCCTTGTTTGC | 60.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
316 | 317 | 2.159653 | CCGCGATCTCTTTCCTTGTTTG | 60.160 | 50.000 | 8.23 | 0.00 | 0.00 | 2.93 |
317 | 318 | 2.076863 | CCGCGATCTCTTTCCTTGTTT | 58.923 | 47.619 | 8.23 | 0.00 | 0.00 | 2.83 |
318 | 319 | 1.726853 | CCGCGATCTCTTTCCTTGTT | 58.273 | 50.000 | 8.23 | 0.00 | 0.00 | 2.83 |
319 | 320 | 0.741221 | GCCGCGATCTCTTTCCTTGT | 60.741 | 55.000 | 8.23 | 0.00 | 0.00 | 3.16 |
320 | 321 | 1.756375 | CGCCGCGATCTCTTTCCTTG | 61.756 | 60.000 | 8.23 | 0.00 | 0.00 | 3.61 |
321 | 322 | 1.519455 | CGCCGCGATCTCTTTCCTT | 60.519 | 57.895 | 8.23 | 0.00 | 0.00 | 3.36 |
322 | 323 | 1.381928 | TACGCCGCGATCTCTTTCCT | 61.382 | 55.000 | 21.79 | 0.00 | 0.00 | 3.36 |
323 | 324 | 0.318784 | ATACGCCGCGATCTCTTTCC | 60.319 | 55.000 | 21.79 | 0.00 | 0.00 | 3.13 |
324 | 325 | 1.053811 | GATACGCCGCGATCTCTTTC | 58.946 | 55.000 | 21.79 | 0.00 | 0.00 | 2.62 |
325 | 326 | 0.660595 | CGATACGCCGCGATCTCTTT | 60.661 | 55.000 | 21.79 | 0.00 | 0.00 | 2.52 |
326 | 327 | 1.082038 | CGATACGCCGCGATCTCTT | 60.082 | 57.895 | 21.79 | 0.00 | 0.00 | 2.85 |
327 | 328 | 2.556792 | CGATACGCCGCGATCTCT | 59.443 | 61.111 | 21.79 | 0.00 | 0.00 | 3.10 |
338 | 339 | 3.432592 | TCTCTTATCTTCCTCGCGATACG | 59.567 | 47.826 | 10.36 | 0.00 | 45.62 | 3.06 |
339 | 340 | 5.122554 | TCATCTCTTATCTTCCTCGCGATAC | 59.877 | 44.000 | 10.36 | 0.00 | 0.00 | 2.24 |
340 | 341 | 5.122554 | GTCATCTCTTATCTTCCTCGCGATA | 59.877 | 44.000 | 10.36 | 0.00 | 0.00 | 2.92 |
341 | 342 | 4.075682 | TCATCTCTTATCTTCCTCGCGAT | 58.924 | 43.478 | 10.36 | 0.00 | 0.00 | 4.58 |
342 | 343 | 3.251245 | GTCATCTCTTATCTTCCTCGCGA | 59.749 | 47.826 | 9.26 | 9.26 | 0.00 | 5.87 |
343 | 344 | 3.560503 | GTCATCTCTTATCTTCCTCGCG | 58.439 | 50.000 | 0.00 | 0.00 | 0.00 | 5.87 |
344 | 345 | 3.560503 | CGTCATCTCTTATCTTCCTCGC | 58.439 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
345 | 346 | 3.610585 | GCCGTCATCTCTTATCTTCCTCG | 60.611 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
346 | 347 | 3.572255 | AGCCGTCATCTCTTATCTTCCTC | 59.428 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
347 | 348 | 3.571590 | AGCCGTCATCTCTTATCTTCCT | 58.428 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
348 | 349 | 3.305744 | GGAGCCGTCATCTCTTATCTTCC | 60.306 | 52.174 | 0.00 | 0.00 | 0.00 | 3.46 |
349 | 350 | 3.572255 | AGGAGCCGTCATCTCTTATCTTC | 59.428 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
350 | 351 | 3.571590 | AGGAGCCGTCATCTCTTATCTT | 58.428 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
351 | 352 | 3.237268 | AGGAGCCGTCATCTCTTATCT | 57.763 | 47.619 | 0.00 | 0.00 | 0.00 | 1.98 |
352 | 353 | 4.303282 | GAAAGGAGCCGTCATCTCTTATC | 58.697 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
353 | 354 | 3.070302 | GGAAAGGAGCCGTCATCTCTTAT | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
354 | 355 | 2.431057 | GGAAAGGAGCCGTCATCTCTTA | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
355 | 356 | 1.208293 | GGAAAGGAGCCGTCATCTCTT | 59.792 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
356 | 357 | 0.827368 | GGAAAGGAGCCGTCATCTCT | 59.173 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
357 | 358 | 0.537188 | TGGAAAGGAGCCGTCATCTC | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
358 | 359 | 0.539051 | CTGGAAAGGAGCCGTCATCT | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
359 | 360 | 1.092345 | GCTGGAAAGGAGCCGTCATC | 61.092 | 60.000 | 0.00 | 0.00 | 0.00 | 2.92 |
360 | 361 | 1.078143 | GCTGGAAAGGAGCCGTCAT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
361 | 362 | 2.347490 | GCTGGAAAGGAGCCGTCA | 59.653 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
362 | 363 | 2.436824 | GGCTGGAAAGGAGCCGTC | 60.437 | 66.667 | 0.00 | 0.00 | 46.47 | 4.79 |
366 | 367 | 1.529309 | CCTAGGGCTGGAAAGGAGC | 59.471 | 63.158 | 0.00 | 0.00 | 35.57 | 4.70 |
367 | 368 | 1.529309 | GCCTAGGGCTGGAAAGGAG | 59.471 | 63.158 | 11.72 | 0.00 | 46.69 | 3.69 |
368 | 369 | 3.741325 | GCCTAGGGCTGGAAAGGA | 58.259 | 61.111 | 11.72 | 0.00 | 46.69 | 3.36 |
389 | 390 | 4.465512 | CTCGTTGCATGCGTGGGC | 62.466 | 66.667 | 14.09 | 0.05 | 40.52 | 5.36 |
390 | 391 | 3.803082 | CCTCGTTGCATGCGTGGG | 61.803 | 66.667 | 14.09 | 4.80 | 38.76 | 4.61 |
391 | 392 | 3.803082 | CCCTCGTTGCATGCGTGG | 61.803 | 66.667 | 14.09 | 19.06 | 41.11 | 4.94 |
392 | 393 | 3.803082 | CCCCTCGTTGCATGCGTG | 61.803 | 66.667 | 14.09 | 0.09 | 0.00 | 5.34 |
393 | 394 | 1.966901 | TATCCCCTCGTTGCATGCGT | 61.967 | 55.000 | 14.09 | 0.00 | 0.00 | 5.24 |
394 | 395 | 0.603707 | ATATCCCCTCGTTGCATGCG | 60.604 | 55.000 | 14.09 | 0.00 | 0.00 | 4.73 |
395 | 396 | 0.877071 | CATATCCCCTCGTTGCATGC | 59.123 | 55.000 | 11.82 | 11.82 | 0.00 | 4.06 |
396 | 397 | 0.877071 | GCATATCCCCTCGTTGCATG | 59.123 | 55.000 | 0.00 | 0.00 | 33.58 | 4.06 |
397 | 398 | 0.250901 | GGCATATCCCCTCGTTGCAT | 60.251 | 55.000 | 0.00 | 0.00 | 35.04 | 3.96 |
398 | 399 | 1.148273 | GGCATATCCCCTCGTTGCA | 59.852 | 57.895 | 0.00 | 0.00 | 35.04 | 4.08 |
399 | 400 | 1.961277 | CGGCATATCCCCTCGTTGC | 60.961 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
400 | 401 | 0.600255 | GTCGGCATATCCCCTCGTTG | 60.600 | 60.000 | 0.00 | 0.00 | 0.00 | 4.10 |
401 | 402 | 1.746517 | GTCGGCATATCCCCTCGTT | 59.253 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
402 | 403 | 2.561956 | CGTCGGCATATCCCCTCGT | 61.562 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
403 | 404 | 2.258591 | CGTCGGCATATCCCCTCG | 59.741 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
404 | 405 | 1.289380 | GACGTCGGCATATCCCCTC | 59.711 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
405 | 406 | 1.046472 | TTGACGTCGGCATATCCCCT | 61.046 | 55.000 | 11.62 | 0.00 | 0.00 | 4.79 |
406 | 407 | 0.179067 | TTTGACGTCGGCATATCCCC | 60.179 | 55.000 | 11.62 | 0.00 | 0.00 | 4.81 |
407 | 408 | 1.217882 | CTTTGACGTCGGCATATCCC | 58.782 | 55.000 | 11.62 | 0.00 | 0.00 | 3.85 |
408 | 409 | 1.217882 | CCTTTGACGTCGGCATATCC | 58.782 | 55.000 | 11.62 | 0.00 | 0.00 | 2.59 |
409 | 410 | 1.935933 | ACCTTTGACGTCGGCATATC | 58.064 | 50.000 | 11.62 | 0.00 | 0.00 | 1.63 |
410 | 411 | 2.396590 | AACCTTTGACGTCGGCATAT | 57.603 | 45.000 | 11.62 | 0.00 | 0.00 | 1.78 |
411 | 412 | 2.172851 | AAACCTTTGACGTCGGCATA | 57.827 | 45.000 | 11.62 | 0.00 | 0.00 | 3.14 |
412 | 413 | 1.802365 | GTAAACCTTTGACGTCGGCAT | 59.198 | 47.619 | 11.62 | 1.65 | 0.00 | 4.40 |
413 | 414 | 1.219646 | GTAAACCTTTGACGTCGGCA | 58.780 | 50.000 | 11.62 | 0.00 | 0.00 | 5.69 |
414 | 415 | 1.193874 | CTGTAAACCTTTGACGTCGGC | 59.806 | 52.381 | 11.62 | 0.00 | 0.00 | 5.54 |
415 | 416 | 2.220133 | CACTGTAAACCTTTGACGTCGG | 59.780 | 50.000 | 11.62 | 8.77 | 0.00 | 4.79 |
416 | 417 | 2.348218 | GCACTGTAAACCTTTGACGTCG | 60.348 | 50.000 | 11.62 | 0.00 | 0.00 | 5.12 |
417 | 418 | 2.870411 | AGCACTGTAAACCTTTGACGTC | 59.130 | 45.455 | 9.11 | 9.11 | 0.00 | 4.34 |
418 | 419 | 2.914059 | AGCACTGTAAACCTTTGACGT | 58.086 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
419 | 420 | 3.963383 | AAGCACTGTAAACCTTTGACG | 57.037 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
427 | 428 | 6.373186 | ACTTCTGGTTTAAGCACTGTAAAC | 57.627 | 37.500 | 0.00 | 0.00 | 39.62 | 2.01 |
428 | 429 | 7.399245 | AAACTTCTGGTTTAAGCACTGTAAA | 57.601 | 32.000 | 0.00 | 0.00 | 45.20 | 2.01 |
429 | 430 | 6.038936 | GGAAACTTCTGGTTTAAGCACTGTAA | 59.961 | 38.462 | 0.00 | 0.00 | 46.77 | 2.41 |
430 | 431 | 5.529800 | GGAAACTTCTGGTTTAAGCACTGTA | 59.470 | 40.000 | 0.00 | 0.00 | 46.77 | 2.74 |
431 | 432 | 4.338400 | GGAAACTTCTGGTTTAAGCACTGT | 59.662 | 41.667 | 0.00 | 0.00 | 46.77 | 3.55 |
432 | 433 | 4.554723 | CGGAAACTTCTGGTTTAAGCACTG | 60.555 | 45.833 | 0.00 | 0.00 | 46.77 | 3.66 |
433 | 434 | 3.564225 | CGGAAACTTCTGGTTTAAGCACT | 59.436 | 43.478 | 0.00 | 0.00 | 46.77 | 4.40 |
434 | 435 | 3.304458 | CCGGAAACTTCTGGTTTAAGCAC | 60.304 | 47.826 | 8.90 | 0.00 | 46.77 | 4.40 |
435 | 436 | 2.882137 | CCGGAAACTTCTGGTTTAAGCA | 59.118 | 45.455 | 8.90 | 0.00 | 46.77 | 3.91 |
436 | 437 | 3.554259 | CCGGAAACTTCTGGTTTAAGC | 57.446 | 47.619 | 8.90 | 0.00 | 46.77 | 3.09 |
444 | 445 | 0.674895 | CTGCCCTCCGGAAACTTCTG | 60.675 | 60.000 | 5.23 | 0.00 | 0.00 | 3.02 |
445 | 446 | 1.679898 | CTGCCCTCCGGAAACTTCT | 59.320 | 57.895 | 5.23 | 0.00 | 0.00 | 2.85 |
448 | 449 | 3.330720 | CCCTGCCCTCCGGAAACT | 61.331 | 66.667 | 5.23 | 0.00 | 0.00 | 2.66 |
454 | 455 | 3.466791 | CTGTATGCCCTGCCCTCCG | 62.467 | 68.421 | 0.00 | 0.00 | 0.00 | 4.63 |
455 | 456 | 2.512896 | CTGTATGCCCTGCCCTCC | 59.487 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
472 | 473 | 1.062002 | CCGTTCATTGGACGTACATGC | 59.938 | 52.381 | 15.97 | 0.00 | 38.77 | 4.06 |
475 | 476 | 2.231721 | TCATCCGTTCATTGGACGTACA | 59.768 | 45.455 | 15.97 | 0.00 | 38.60 | 2.90 |
499 | 500 | 1.125748 | GCTGATTGATAGATCGTGCGC | 59.874 | 52.381 | 0.00 | 0.00 | 0.00 | 6.09 |
512 | 513 | 2.932614 | GGTACAGTGCACTAGCTGATTG | 59.067 | 50.000 | 21.20 | 8.03 | 42.74 | 2.67 |
513 | 514 | 2.567169 | TGGTACAGTGCACTAGCTGATT | 59.433 | 45.455 | 21.20 | 0.59 | 42.74 | 2.57 |
514 | 515 | 2.179427 | TGGTACAGTGCACTAGCTGAT | 58.821 | 47.619 | 21.20 | 3.71 | 42.74 | 2.90 |
515 | 516 | 1.627864 | TGGTACAGTGCACTAGCTGA | 58.372 | 50.000 | 21.20 | 0.60 | 42.74 | 4.26 |
516 | 517 | 2.455674 | TTGGTACAGTGCACTAGCTG | 57.544 | 50.000 | 21.20 | 10.85 | 42.39 | 4.24 |
552 | 553 | 4.324402 | GCTGTTGTTGCCTAATCAAATTCG | 59.676 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
566 | 569 | 3.538003 | CGCGTGTAAATATGCTGTTGTTG | 59.462 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
588 | 591 | 8.149973 | TCTACTTTATTCCGCATATGGTTTTC | 57.850 | 34.615 | 4.56 | 0.00 | 0.00 | 2.29 |
601 | 604 | 6.985188 | TGTGTGCAGATTCTACTTTATTCC | 57.015 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
629 | 632 | 7.545965 | TGCGAAAAGGAAGAATTTTTAACACAA | 59.454 | 29.630 | 0.00 | 0.00 | 30.22 | 3.33 |
641 | 645 | 4.261447 | GCTTTTAGGTGCGAAAAGGAAGAA | 60.261 | 41.667 | 9.27 | 0.00 | 41.95 | 2.52 |
909 | 923 | 2.093973 | AGGTACATATAGCGAGCCATGC | 60.094 | 50.000 | 0.00 | 0.00 | 33.81 | 4.06 |
918 | 932 | 4.815269 | CTGAAGCCTCAGGTACATATAGC | 58.185 | 47.826 | 4.26 | 0.00 | 44.72 | 2.97 |
942 | 960 | 4.782019 | TTGGAATGATGGTAGCAACAAC | 57.218 | 40.909 | 9.03 | 6.58 | 0.00 | 3.32 |
1024 | 1042 | 1.671054 | CACCACGGACGATGGCTTT | 60.671 | 57.895 | 11.40 | 0.00 | 41.31 | 3.51 |
1055 | 1073 | 1.841556 | ACCTCCCTTGTGCCGAGAA | 60.842 | 57.895 | 0.00 | 0.00 | 0.00 | 2.87 |
1126 | 1144 | 1.207329 | GTCGAGCCTACATCCCTTGTT | 59.793 | 52.381 | 0.00 | 0.00 | 39.87 | 2.83 |
1137 | 1155 | 1.520120 | ATCGTCGTCGTCGAGCCTA | 60.520 | 57.895 | 18.55 | 0.00 | 46.96 | 3.93 |
1282 | 1301 | 1.562942 | AGAGCCAGCCATCTTCATTCA | 59.437 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1329 | 1348 | 7.770897 | AGACACAAAATACTTTATCCTAGGCAG | 59.229 | 37.037 | 2.96 | 0.00 | 0.00 | 4.85 |
1384 | 1403 | 9.825972 | CTGTTATGTTGAACATTTTGTACTAGG | 57.174 | 33.333 | 16.75 | 0.82 | 39.88 | 3.02 |
1441 | 1460 | 4.651778 | ACAAGTGCTTGCTTCCTGTATTA | 58.348 | 39.130 | 11.43 | 0.00 | 44.03 | 0.98 |
1442 | 1461 | 3.490348 | ACAAGTGCTTGCTTCCTGTATT | 58.510 | 40.909 | 11.43 | 0.00 | 44.03 | 1.89 |
1547 | 1608 | 1.670791 | TTTGTCGACTGGGGTTGAAC | 58.329 | 50.000 | 17.92 | 0.00 | 37.58 | 3.18 |
1602 | 1663 | 2.224305 | GGCAACTTACCTCCATCGCTAT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
1603 | 1664 | 1.138266 | GGCAACTTACCTCCATCGCTA | 59.862 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
1807 | 1877 | 2.619074 | GCTTTTAGATGGGCTGGTGAGT | 60.619 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1811 | 1881 | 0.033109 | GGGCTTTTAGATGGGCTGGT | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1838 | 1911 | 6.540189 | TGCTGCATTCTTTTCCTCTTCTATAC | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
1928 | 2006 | 2.444256 | GGCTTATCCCTCCAGCGGT | 61.444 | 63.158 | 0.00 | 0.00 | 34.09 | 5.68 |
1941 | 2019 | 9.742144 | TTAGACAAATAAATACTTGGTGGCTTA | 57.258 | 29.630 | 0.00 | 0.00 | 0.00 | 3.09 |
2008 | 2089 | 5.996271 | AGGATCGGAGGGAGTATATCATA | 57.004 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
2014 | 2095 | 5.217400 | AGTAAAAAGGATCGGAGGGAGTAT | 58.783 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
2017 | 2098 | 3.707102 | AGAGTAAAAAGGATCGGAGGGAG | 59.293 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2018 | 2099 | 3.451178 | CAGAGTAAAAAGGATCGGAGGGA | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
2019 | 2100 | 3.798202 | CAGAGTAAAAAGGATCGGAGGG | 58.202 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2020 | 2101 | 3.198872 | GCAGAGTAAAAAGGATCGGAGG | 58.801 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2021 | 2102 | 3.861840 | TGCAGAGTAAAAAGGATCGGAG | 58.138 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
2022 | 2103 | 3.973206 | TGCAGAGTAAAAAGGATCGGA | 57.027 | 42.857 | 0.00 | 0.00 | 0.00 | 4.55 |
2023 | 2104 | 6.867662 | AATATGCAGAGTAAAAAGGATCGG | 57.132 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
2024 | 2105 | 7.657761 | ACCTAATATGCAGAGTAAAAAGGATCG | 59.342 | 37.037 | 2.56 | 0.00 | 0.00 | 3.69 |
2025 | 2106 | 8.910351 | ACCTAATATGCAGAGTAAAAAGGATC | 57.090 | 34.615 | 2.56 | 0.00 | 0.00 | 3.36 |
2026 | 2107 | 9.700831 | AAACCTAATATGCAGAGTAAAAAGGAT | 57.299 | 29.630 | 2.56 | 0.00 | 0.00 | 3.24 |
2027 | 2108 | 8.956426 | CAAACCTAATATGCAGAGTAAAAAGGA | 58.044 | 33.333 | 2.56 | 0.00 | 0.00 | 3.36 |
2028 | 2109 | 8.739972 | ACAAACCTAATATGCAGAGTAAAAAGG | 58.260 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
2029 | 2110 | 9.774742 | GACAAACCTAATATGCAGAGTAAAAAG | 57.225 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2030 | 2111 | 9.515226 | AGACAAACCTAATATGCAGAGTAAAAA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2031 | 2112 | 8.946085 | CAGACAAACCTAATATGCAGAGTAAAA | 58.054 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2032 | 2113 | 8.318412 | TCAGACAAACCTAATATGCAGAGTAAA | 58.682 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
2033 | 2114 | 7.847096 | TCAGACAAACCTAATATGCAGAGTAA | 58.153 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2034 | 2115 | 7.418337 | TCAGACAAACCTAATATGCAGAGTA | 57.582 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2035 | 2116 | 6.299805 | TCAGACAAACCTAATATGCAGAGT | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
2036 | 2117 | 6.820656 | ACTTCAGACAAACCTAATATGCAGAG | 59.179 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
2037 | 2118 | 6.711277 | ACTTCAGACAAACCTAATATGCAGA | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2038 | 2119 | 6.595326 | TGACTTCAGACAAACCTAATATGCAG | 59.405 | 38.462 | 0.00 | 0.00 | 0.00 | 4.41 |
2039 | 2120 | 6.472016 | TGACTTCAGACAAACCTAATATGCA | 58.528 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2040 | 2121 | 6.985188 | TGACTTCAGACAAACCTAATATGC | 57.015 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
2041 | 2122 | 9.388506 | AGATTGACTTCAGACAAACCTAATATG | 57.611 | 33.333 | 0.00 | 0.00 | 33.89 | 1.78 |
2042 | 2123 | 9.606631 | GAGATTGACTTCAGACAAACCTAATAT | 57.393 | 33.333 | 0.00 | 0.00 | 33.89 | 1.28 |
2043 | 2124 | 8.593679 | TGAGATTGACTTCAGACAAACCTAATA | 58.406 | 33.333 | 0.00 | 0.00 | 33.89 | 0.98 |
2044 | 2125 | 7.453393 | TGAGATTGACTTCAGACAAACCTAAT | 58.547 | 34.615 | 0.00 | 0.00 | 33.89 | 1.73 |
2045 | 2126 | 6.826668 | TGAGATTGACTTCAGACAAACCTAA | 58.173 | 36.000 | 0.00 | 0.00 | 33.89 | 2.69 |
2046 | 2127 | 6.419484 | TGAGATTGACTTCAGACAAACCTA | 57.581 | 37.500 | 0.00 | 0.00 | 33.89 | 3.08 |
2047 | 2128 | 5.296151 | TGAGATTGACTTCAGACAAACCT | 57.704 | 39.130 | 0.00 | 0.00 | 33.89 | 3.50 |
2048 | 2129 | 5.123027 | GGATGAGATTGACTTCAGACAAACC | 59.877 | 44.000 | 0.00 | 0.00 | 33.89 | 3.27 |
2049 | 2130 | 5.702670 | TGGATGAGATTGACTTCAGACAAAC | 59.297 | 40.000 | 0.00 | 0.00 | 33.89 | 2.93 |
2050 | 2131 | 5.868454 | TGGATGAGATTGACTTCAGACAAA | 58.132 | 37.500 | 0.00 | 0.00 | 33.89 | 2.83 |
2051 | 2132 | 5.488262 | TGGATGAGATTGACTTCAGACAA | 57.512 | 39.130 | 0.00 | 0.00 | 34.59 | 3.18 |
2052 | 2133 | 5.012458 | AGTTGGATGAGATTGACTTCAGACA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2053 | 2134 | 5.486526 | AGTTGGATGAGATTGACTTCAGAC | 58.513 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2054 | 2135 | 5.752036 | AGTTGGATGAGATTGACTTCAGA | 57.248 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
2055 | 2136 | 6.429078 | TCAAAGTTGGATGAGATTGACTTCAG | 59.571 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2056 | 2137 | 6.205464 | GTCAAAGTTGGATGAGATTGACTTCA | 59.795 | 38.462 | 8.70 | 0.00 | 41.92 | 3.02 |
2057 | 2138 | 6.348868 | GGTCAAAGTTGGATGAGATTGACTTC | 60.349 | 42.308 | 13.97 | 0.00 | 43.66 | 3.01 |
2058 | 2139 | 5.474876 | GGTCAAAGTTGGATGAGATTGACTT | 59.525 | 40.000 | 13.97 | 0.00 | 43.66 | 3.01 |
2059 | 2140 | 5.006386 | GGTCAAAGTTGGATGAGATTGACT | 58.994 | 41.667 | 13.97 | 0.00 | 43.66 | 3.41 |
2060 | 2141 | 4.761739 | TGGTCAAAGTTGGATGAGATTGAC | 59.238 | 41.667 | 7.68 | 7.68 | 43.51 | 3.18 |
2061 | 2142 | 4.984295 | TGGTCAAAGTTGGATGAGATTGA | 58.016 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2062 | 2143 | 5.706916 | CTTGGTCAAAGTTGGATGAGATTG | 58.293 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
2063 | 2144 | 5.972107 | CTTGGTCAAAGTTGGATGAGATT | 57.028 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2100 | 2181 | 9.900710 | GTTGGTGTTGTTATGTAAATGTCAATA | 57.099 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
2101 | 2182 | 8.417106 | TGTTGGTGTTGTTATGTAAATGTCAAT | 58.583 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2102 | 2183 | 7.772166 | TGTTGGTGTTGTTATGTAAATGTCAA | 58.228 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
2103 | 2184 | 7.334844 | TGTTGGTGTTGTTATGTAAATGTCA | 57.665 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2104 | 2185 | 8.079203 | TGATGTTGGTGTTGTTATGTAAATGTC | 58.921 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2105 | 2186 | 7.946207 | TGATGTTGGTGTTGTTATGTAAATGT | 58.054 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
2106 | 2187 | 8.984891 | ATGATGTTGGTGTTGTTATGTAAATG | 57.015 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
2109 | 2190 | 9.508642 | TCTAATGATGTTGGTGTTGTTATGTAA | 57.491 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2110 | 2191 | 9.679661 | ATCTAATGATGTTGGTGTTGTTATGTA | 57.320 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2111 | 2192 | 7.994425 | TCTAATGATGTTGGTGTTGTTATGT | 57.006 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2112 | 2193 | 9.507280 | GAATCTAATGATGTTGGTGTTGTTATG | 57.493 | 33.333 | 0.00 | 0.00 | 32.44 | 1.90 |
2113 | 2194 | 9.241919 | TGAATCTAATGATGTTGGTGTTGTTAT | 57.758 | 29.630 | 0.00 | 0.00 | 32.44 | 1.89 |
2114 | 2195 | 8.628630 | TGAATCTAATGATGTTGGTGTTGTTA | 57.371 | 30.769 | 0.00 | 0.00 | 32.44 | 2.41 |
2115 | 2196 | 7.523293 | TGAATCTAATGATGTTGGTGTTGTT | 57.477 | 32.000 | 0.00 | 0.00 | 32.44 | 2.83 |
2116 | 2197 | 7.613022 | AGATGAATCTAATGATGTTGGTGTTGT | 59.387 | 33.333 | 0.00 | 0.00 | 34.85 | 3.32 |
2117 | 2198 | 7.993101 | AGATGAATCTAATGATGTTGGTGTTG | 58.007 | 34.615 | 0.00 | 0.00 | 34.85 | 3.33 |
2118 | 2199 | 7.011763 | CGAGATGAATCTAATGATGTTGGTGTT | 59.988 | 37.037 | 0.00 | 0.00 | 37.25 | 3.32 |
2119 | 2200 | 6.481313 | CGAGATGAATCTAATGATGTTGGTGT | 59.519 | 38.462 | 0.00 | 0.00 | 37.25 | 4.16 |
2120 | 2201 | 6.073385 | CCGAGATGAATCTAATGATGTTGGTG | 60.073 | 42.308 | 0.00 | 0.00 | 37.25 | 4.17 |
2121 | 2202 | 5.994054 | CCGAGATGAATCTAATGATGTTGGT | 59.006 | 40.000 | 0.00 | 0.00 | 37.25 | 3.67 |
2122 | 2203 | 6.226052 | TCCGAGATGAATCTAATGATGTTGG | 58.774 | 40.000 | 0.00 | 0.00 | 37.25 | 3.77 |
2123 | 2204 | 7.719778 | TTCCGAGATGAATCTAATGATGTTG | 57.280 | 36.000 | 0.00 | 0.00 | 37.25 | 3.33 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.