Multiple sequence alignment - TraesCS3B01G200100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G200100 chr3B 100.000 2909 0 0 1 2909 228751992 228749084 0.000000e+00 5373.0
1 TraesCS3B01G200100 chr3B 77.651 613 118 16 1286 1890 228690773 228690172 3.570000e-94 355.0
2 TraesCS3B01G200100 chr3B 76.518 626 130 14 1272 1890 556960062 556959447 2.800000e-85 326.0
3 TraesCS3B01G200100 chr3B 94.595 111 4 2 181 290 5951431 5951322 1.390000e-38 171.0
4 TraesCS3B01G200100 chr3B 96.190 105 2 2 181 284 560117297 560117400 1.390000e-38 171.0
5 TraesCS3B01G200100 chr3B 95.370 108 1 4 182 287 164032585 164032690 4.990000e-38 169.0
6 TraesCS3B01G200100 chr3B 93.750 48 3 0 1091 1138 593163661 593163708 4.020000e-09 73.1
7 TraesCS3B01G200100 chr3B 93.750 48 3 0 1091 1138 593541139 593541186 4.020000e-09 73.1
8 TraesCS3B01G200100 chr3D 88.144 2699 188 56 279 2909 157541522 157538888 0.000000e+00 3090.0
9 TraesCS3B01G200100 chr3D 78.069 611 119 12 1286 1890 157443366 157442765 3.540000e-99 372.0
10 TraesCS3B01G200100 chr3D 77.083 624 130 11 1272 1890 427294810 427294195 5.970000e-92 348.0
11 TraesCS3B01G200100 chr3D 91.667 48 4 0 1091 1138 451709916 451709963 1.870000e-07 67.6
12 TraesCS3B01G200100 chr3D 91.667 48 4 0 1091 1138 451885415 451885462 1.870000e-07 67.6
13 TraesCS3B01G200100 chr3A 89.395 1735 131 24 1211 2909 170658796 170660513 0.000000e+00 2135.0
14 TraesCS3B01G200100 chr3A 89.485 447 30 9 435 877 170658042 170658475 1.520000e-152 549.0
15 TraesCS3B01G200100 chr3A 78.303 613 117 13 1286 1890 170811701 170812305 5.880000e-102 381.0
16 TraesCS3B01G200100 chr3A 77.207 623 129 11 1270 1887 559334333 559334947 4.610000e-93 351.0
17 TraesCS3B01G200100 chr3A 88.060 268 14 6 900 1159 170658526 170658783 4.710000e-78 302.0
18 TraesCS3B01G200100 chr3A 93.750 48 3 0 1091 1138 594492286 594492333 4.020000e-09 73.1
19 TraesCS3B01G200100 chr4A 83.117 308 40 10 1284 1585 26413804 26413503 1.330000e-68 270.0
20 TraesCS3B01G200100 chr4A 98.148 54 0 1 1 53 62545624 62545571 3.090000e-15 93.5
21 TraesCS3B01G200100 chr2B 75.632 554 107 24 1273 1812 44159063 44159602 1.730000e-62 250.0
22 TraesCS3B01G200100 chr2B 95.413 109 2 3 182 288 752488171 752488064 1.390000e-38 171.0
23 TraesCS3B01G200100 chr5B 74.951 511 107 17 1267 1768 687212992 687213490 6.310000e-52 215.0
24 TraesCS3B01G200100 chr5B 94.595 111 2 4 179 287 79345635 79345743 4.990000e-38 169.0
25 TraesCS3B01G200100 chr5B 96.296 54 1 1 1 53 275054327 275054274 1.440000e-13 87.9
26 TraesCS3B01G200100 chr6A 94.495 109 3 3 175 282 315625257 315625363 6.450000e-37 165.0
27 TraesCS3B01G200100 chr6B 92.982 114 4 4 181 291 424080499 424080611 2.320000e-36 163.0
28 TraesCS3B01G200100 chr6B 92.982 114 4 4 181 291 424303212 424303324 2.320000e-36 163.0
29 TraesCS3B01G200100 chr6B 96.296 54 1 1 1 53 408225796 408225743 1.440000e-13 87.9
30 TraesCS3B01G200100 chr6D 92.308 117 3 6 175 288 52011293 52011180 8.340000e-36 161.0
31 TraesCS3B01G200100 chr7A 98.148 54 0 1 1 53 513205973 513206026 3.090000e-15 93.5
32 TraesCS3B01G200100 chr7A 98.148 54 0 1 1 53 669734140 669734087 3.090000e-15 93.5
33 TraesCS3B01G200100 chr4D 98.148 54 0 1 1 53 15920568 15920515 3.090000e-15 93.5
34 TraesCS3B01G200100 chr1D 98.148 54 0 1 1 53 388966608 388966661 3.090000e-15 93.5
35 TraesCS3B01G200100 chr1A 98.148 54 0 1 1 53 543650095 543650042 3.090000e-15 93.5
36 TraesCS3B01G200100 chr7D 96.296 54 1 1 1 53 511079604 511079551 1.440000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G200100 chr3B 228749084 228751992 2908 True 5373.000000 5373 100.000 1 2909 1 chr3B.!!$R3 2908
1 TraesCS3B01G200100 chr3B 228690172 228690773 601 True 355.000000 355 77.651 1286 1890 1 chr3B.!!$R2 604
2 TraesCS3B01G200100 chr3B 556959447 556960062 615 True 326.000000 326 76.518 1272 1890 1 chr3B.!!$R4 618
3 TraesCS3B01G200100 chr3D 157538888 157541522 2634 True 3090.000000 3090 88.144 279 2909 1 chr3D.!!$R2 2630
4 TraesCS3B01G200100 chr3D 157442765 157443366 601 True 372.000000 372 78.069 1286 1890 1 chr3D.!!$R1 604
5 TraesCS3B01G200100 chr3D 427294195 427294810 615 True 348.000000 348 77.083 1272 1890 1 chr3D.!!$R3 618
6 TraesCS3B01G200100 chr3A 170658042 170660513 2471 False 995.333333 2135 88.980 435 2909 3 chr3A.!!$F4 2474
7 TraesCS3B01G200100 chr3A 170811701 170812305 604 False 381.000000 381 78.303 1286 1890 1 chr3A.!!$F1 604
8 TraesCS3B01G200100 chr3A 559334333 559334947 614 False 351.000000 351 77.207 1270 1887 1 chr3A.!!$F2 617
9 TraesCS3B01G200100 chr2B 44159063 44159602 539 False 250.000000 250 75.632 1273 1812 1 chr2B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.042708 CGCGCGAAGAGGATCAATTG 60.043 55.0 28.94 0.0 37.82 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 1968 1.081442 CTAGCGCGCATATGGTCGA 60.081 57.895 35.1 5.24 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.830370 GCCCGGAAGCCCATTGAG 60.830 66.667 0.73 0.00 0.00 3.02
35 36 2.124151 CCCGGAAGCCCATTGAGG 60.124 66.667 0.73 0.00 37.03 3.86
36 37 2.679342 CCCGGAAGCCCATTGAGGA 61.679 63.158 0.73 0.00 41.22 3.71
37 38 1.153086 CCGGAAGCCCATTGAGGAG 60.153 63.158 0.00 0.00 41.22 3.69
38 39 1.626356 CCGGAAGCCCATTGAGGAGA 61.626 60.000 0.00 0.00 41.22 3.71
39 40 0.253044 CGGAAGCCCATTGAGGAGAA 59.747 55.000 0.00 0.00 41.22 2.87
40 41 1.756430 GGAAGCCCATTGAGGAGAAC 58.244 55.000 0.00 0.00 41.22 3.01
41 42 1.373570 GAAGCCCATTGAGGAGAACG 58.626 55.000 0.00 0.00 41.22 3.95
42 43 0.678048 AAGCCCATTGAGGAGAACGC 60.678 55.000 0.00 0.00 41.22 4.84
43 44 2.464459 GCCCATTGAGGAGAACGCG 61.464 63.158 3.53 3.53 41.22 6.01
44 45 2.464459 CCCATTGAGGAGAACGCGC 61.464 63.158 5.73 0.00 41.22 6.86
45 46 2.697425 CATTGAGGAGAACGCGCG 59.303 61.111 30.96 30.96 0.00 6.86
46 47 1.805539 CATTGAGGAGAACGCGCGA 60.806 57.895 39.36 11.28 0.00 5.87
47 48 1.080093 ATTGAGGAGAACGCGCGAA 60.080 52.632 39.36 18.25 0.00 4.70
48 49 1.078759 ATTGAGGAGAACGCGCGAAG 61.079 55.000 39.36 8.30 0.00 3.79
49 50 2.137425 TTGAGGAGAACGCGCGAAGA 62.137 55.000 39.36 7.85 0.00 2.87
50 51 1.870016 GAGGAGAACGCGCGAAGAG 60.870 63.158 39.36 7.37 0.00 2.85
51 52 2.881352 GGAGAACGCGCGAAGAGG 60.881 66.667 39.36 6.47 0.00 3.69
52 53 2.178521 GAGAACGCGCGAAGAGGA 59.821 61.111 39.36 0.00 0.00 3.71
53 54 1.226717 GAGAACGCGCGAAGAGGAT 60.227 57.895 39.36 9.38 0.00 3.24
54 55 1.203600 GAGAACGCGCGAAGAGGATC 61.204 60.000 39.36 20.07 0.00 3.36
55 56 1.516386 GAACGCGCGAAGAGGATCA 60.516 57.895 39.36 0.00 37.82 2.92
56 57 1.076533 GAACGCGCGAAGAGGATCAA 61.077 55.000 39.36 0.00 37.82 2.57
57 58 0.460284 AACGCGCGAAGAGGATCAAT 60.460 50.000 39.36 5.95 37.82 2.57
58 59 0.460284 ACGCGCGAAGAGGATCAATT 60.460 50.000 39.36 5.70 37.82 2.32
59 60 0.042708 CGCGCGAAGAGGATCAATTG 60.043 55.000 28.94 0.00 37.82 2.32
60 61 1.009829 GCGCGAAGAGGATCAATTGT 58.990 50.000 12.10 0.00 37.82 2.71
61 62 1.398390 GCGCGAAGAGGATCAATTGTT 59.602 47.619 12.10 0.00 37.82 2.83
62 63 2.607635 GCGCGAAGAGGATCAATTGTTA 59.392 45.455 12.10 0.00 37.82 2.41
63 64 3.063452 GCGCGAAGAGGATCAATTGTTAA 59.937 43.478 12.10 0.00 37.82 2.01
64 65 4.783450 GCGCGAAGAGGATCAATTGTTAAG 60.783 45.833 12.10 0.00 37.82 1.85
65 66 4.592179 GCGAAGAGGATCAATTGTTAAGC 58.408 43.478 5.13 0.00 37.82 3.09
66 67 4.333926 GCGAAGAGGATCAATTGTTAAGCT 59.666 41.667 5.13 0.00 37.82 3.74
67 68 5.728898 GCGAAGAGGATCAATTGTTAAGCTG 60.729 44.000 5.13 0.00 37.82 4.24
68 69 5.582269 CGAAGAGGATCAATTGTTAAGCTGA 59.418 40.000 5.13 0.00 37.82 4.26
69 70 6.092670 CGAAGAGGATCAATTGTTAAGCTGAA 59.907 38.462 5.13 0.00 37.82 3.02
70 71 7.201679 CGAAGAGGATCAATTGTTAAGCTGAAT 60.202 37.037 5.13 0.00 37.82 2.57
71 72 7.330900 AGAGGATCAATTGTTAAGCTGAATG 57.669 36.000 5.13 0.00 37.82 2.67
72 73 6.888632 AGAGGATCAATTGTTAAGCTGAATGT 59.111 34.615 5.13 0.00 37.82 2.71
73 74 8.049117 AGAGGATCAATTGTTAAGCTGAATGTA 58.951 33.333 5.13 0.00 37.82 2.29
74 75 8.757982 AGGATCAATTGTTAAGCTGAATGTAT 57.242 30.769 5.13 0.00 0.00 2.29
75 76 8.844244 AGGATCAATTGTTAAGCTGAATGTATC 58.156 33.333 5.13 0.00 0.00 2.24
76 77 8.623903 GGATCAATTGTTAAGCTGAATGTATCA 58.376 33.333 5.13 0.00 36.38 2.15
78 79 9.961265 ATCAATTGTTAAGCTGAATGTATCATG 57.039 29.630 5.13 0.00 37.44 3.07
79 80 7.916977 TCAATTGTTAAGCTGAATGTATCATGC 59.083 33.333 5.13 0.00 37.44 4.06
80 81 6.756299 TTGTTAAGCTGAATGTATCATGCA 57.244 33.333 0.00 0.00 37.44 3.96
81 82 6.947644 TGTTAAGCTGAATGTATCATGCAT 57.052 33.333 0.00 0.00 37.44 3.96
82 83 6.731164 TGTTAAGCTGAATGTATCATGCATG 58.269 36.000 21.07 21.07 37.44 4.06
83 84 6.319405 TGTTAAGCTGAATGTATCATGCATGT 59.681 34.615 25.43 15.34 37.44 3.21
84 85 4.830826 AGCTGAATGTATCATGCATGTG 57.169 40.909 25.43 3.46 37.44 3.21
85 86 4.457466 AGCTGAATGTATCATGCATGTGA 58.543 39.130 25.43 9.66 37.44 3.58
86 87 4.275196 AGCTGAATGTATCATGCATGTGAC 59.725 41.667 25.43 22.32 37.44 3.67
87 88 4.035909 GCTGAATGTATCATGCATGTGACA 59.964 41.667 27.02 27.02 37.44 3.58
88 89 5.744666 TGAATGTATCATGCATGTGACAG 57.255 39.130 27.86 7.60 31.50 3.51
89 90 5.430007 TGAATGTATCATGCATGTGACAGA 58.570 37.500 27.86 17.82 31.50 3.41
90 91 5.526111 TGAATGTATCATGCATGTGACAGAG 59.474 40.000 27.86 6.37 31.50 3.35
91 92 4.741321 TGTATCATGCATGTGACAGAGA 57.259 40.909 25.43 4.73 0.00 3.10
92 93 5.088680 TGTATCATGCATGTGACAGAGAA 57.911 39.130 25.43 3.97 0.00 2.87
93 94 5.677567 TGTATCATGCATGTGACAGAGAAT 58.322 37.500 25.43 11.16 0.00 2.40
94 95 6.819284 TGTATCATGCATGTGACAGAGAATA 58.181 36.000 25.43 10.20 0.00 1.75
95 96 6.927381 TGTATCATGCATGTGACAGAGAATAG 59.073 38.462 25.43 0.00 0.00 1.73
96 97 4.124970 TCATGCATGTGACAGAGAATAGC 58.875 43.478 25.43 0.00 0.00 2.97
97 98 3.615224 TGCATGTGACAGAGAATAGCA 57.385 42.857 0.00 0.00 0.00 3.49
98 99 3.528532 TGCATGTGACAGAGAATAGCAG 58.471 45.455 0.00 0.00 0.00 4.24
99 100 3.196254 TGCATGTGACAGAGAATAGCAGA 59.804 43.478 0.00 0.00 0.00 4.26
100 101 4.141779 TGCATGTGACAGAGAATAGCAGAT 60.142 41.667 0.00 0.00 0.00 2.90
101 102 4.448395 GCATGTGACAGAGAATAGCAGATC 59.552 45.833 0.00 0.00 0.00 2.75
102 103 4.298744 TGTGACAGAGAATAGCAGATCG 57.701 45.455 0.00 0.00 0.00 3.69
103 104 3.696548 TGTGACAGAGAATAGCAGATCGT 59.303 43.478 0.00 0.00 0.00 3.73
104 105 4.041049 GTGACAGAGAATAGCAGATCGTG 58.959 47.826 0.00 0.00 0.00 4.35
105 106 3.696548 TGACAGAGAATAGCAGATCGTGT 59.303 43.478 0.00 0.00 0.00 4.49
106 107 4.881850 TGACAGAGAATAGCAGATCGTGTA 59.118 41.667 0.00 0.00 0.00 2.90
107 108 5.532779 TGACAGAGAATAGCAGATCGTGTAT 59.467 40.000 0.00 0.00 0.00 2.29
108 109 5.767269 ACAGAGAATAGCAGATCGTGTATG 58.233 41.667 0.00 0.00 0.00 2.39
109 110 5.532779 ACAGAGAATAGCAGATCGTGTATGA 59.467 40.000 0.00 0.00 0.00 2.15
110 111 6.085573 CAGAGAATAGCAGATCGTGTATGAG 58.914 44.000 0.00 0.00 0.00 2.90
111 112 5.767665 AGAGAATAGCAGATCGTGTATGAGT 59.232 40.000 0.00 0.00 0.00 3.41
112 113 6.937465 AGAGAATAGCAGATCGTGTATGAGTA 59.063 38.462 0.00 0.00 0.00 2.59
113 114 7.609918 AGAGAATAGCAGATCGTGTATGAGTAT 59.390 37.037 0.00 0.00 0.00 2.12
114 115 8.794335 AGAATAGCAGATCGTGTATGAGTATA 57.206 34.615 0.00 0.00 0.00 1.47
115 116 8.670135 AGAATAGCAGATCGTGTATGAGTATAC 58.330 37.037 0.00 0.00 39.69 1.47
116 117 5.284428 AGCAGATCGTGTATGAGTATACG 57.716 43.478 0.00 0.00 43.94 3.06
117 118 4.154375 AGCAGATCGTGTATGAGTATACGG 59.846 45.833 0.00 0.00 43.14 4.02
118 119 4.153655 GCAGATCGTGTATGAGTATACGGA 59.846 45.833 0.00 0.00 43.14 4.69
119 120 5.671577 GCAGATCGTGTATGAGTATACGGAG 60.672 48.000 0.00 0.00 43.14 4.63
120 121 5.638234 CAGATCGTGTATGAGTATACGGAGA 59.362 44.000 0.00 0.00 43.14 3.71
121 122 6.314152 CAGATCGTGTATGAGTATACGGAGAT 59.686 42.308 0.00 0.00 43.14 2.75
122 123 6.535865 AGATCGTGTATGAGTATACGGAGATC 59.464 42.308 14.54 14.54 43.14 2.75
123 124 5.791666 TCGTGTATGAGTATACGGAGATCT 58.208 41.667 0.00 0.00 43.14 2.75
124 125 6.228995 TCGTGTATGAGTATACGGAGATCTT 58.771 40.000 0.00 0.00 43.14 2.40
125 126 6.709397 TCGTGTATGAGTATACGGAGATCTTT 59.291 38.462 0.00 0.00 43.14 2.52
126 127 7.016466 CGTGTATGAGTATACGGAGATCTTTC 58.984 42.308 0.00 0.00 41.68 2.62
127 128 7.307811 CGTGTATGAGTATACGGAGATCTTTCA 60.308 40.741 0.00 0.00 41.68 2.69
128 129 8.516234 GTGTATGAGTATACGGAGATCTTTCAT 58.484 37.037 0.00 1.05 41.68 2.57
129 130 9.078990 TGTATGAGTATACGGAGATCTTTCATT 57.921 33.333 0.00 0.00 41.68 2.57
130 131 9.562583 GTATGAGTATACGGAGATCTTTCATTC 57.437 37.037 0.00 0.00 30.68 2.67
131 132 7.825331 TGAGTATACGGAGATCTTTCATTCT 57.175 36.000 0.00 0.00 0.00 2.40
132 133 8.239038 TGAGTATACGGAGATCTTTCATTCTT 57.761 34.615 0.00 0.00 0.00 2.52
133 134 8.353684 TGAGTATACGGAGATCTTTCATTCTTC 58.646 37.037 0.00 0.00 0.00 2.87
134 135 8.472007 AGTATACGGAGATCTTTCATTCTTCT 57.528 34.615 0.00 0.00 0.00 2.85
135 136 8.573035 AGTATACGGAGATCTTTCATTCTTCTC 58.427 37.037 0.00 0.00 33.63 2.87
136 137 5.930837 ACGGAGATCTTTCATTCTTCTCT 57.069 39.130 0.00 0.00 34.58 3.10
137 138 6.293004 ACGGAGATCTTTCATTCTTCTCTT 57.707 37.500 0.00 0.00 34.58 2.85
138 139 6.706295 ACGGAGATCTTTCATTCTTCTCTTT 58.294 36.000 0.00 0.00 34.58 2.52
139 140 7.164803 ACGGAGATCTTTCATTCTTCTCTTTT 58.835 34.615 0.00 0.00 34.58 2.27
140 141 7.333174 ACGGAGATCTTTCATTCTTCTCTTTTC 59.667 37.037 0.00 0.00 34.58 2.29
141 142 7.548780 CGGAGATCTTTCATTCTTCTCTTTTCT 59.451 37.037 0.00 0.00 34.58 2.52
142 143 9.230122 GGAGATCTTTCATTCTTCTCTTTTCTT 57.770 33.333 0.00 0.00 34.58 2.52
170 171 5.492855 TTTTTACGGAGGGAGATCTTTCA 57.507 39.130 0.00 0.00 0.00 2.69
171 172 5.693769 TTTTACGGAGGGAGATCTTTCAT 57.306 39.130 0.00 0.00 0.00 2.57
172 173 5.693769 TTTACGGAGGGAGATCTTTCATT 57.306 39.130 0.00 0.00 0.00 2.57
173 174 3.828875 ACGGAGGGAGATCTTTCATTC 57.171 47.619 0.00 0.00 0.00 2.67
174 175 3.379452 ACGGAGGGAGATCTTTCATTCT 58.621 45.455 0.00 0.00 0.00 2.40
175 176 3.777522 ACGGAGGGAGATCTTTCATTCTT 59.222 43.478 0.00 0.00 0.00 2.52
176 177 4.226168 ACGGAGGGAGATCTTTCATTCTTT 59.774 41.667 0.00 0.00 0.00 2.52
177 178 4.813697 CGGAGGGAGATCTTTCATTCTTTC 59.186 45.833 0.00 0.00 0.00 2.62
178 179 5.396213 CGGAGGGAGATCTTTCATTCTTTCT 60.396 44.000 0.00 0.00 0.00 2.52
179 180 5.821995 GGAGGGAGATCTTTCATTCTTTCTG 59.178 44.000 0.00 0.00 0.00 3.02
180 181 5.192176 AGGGAGATCTTTCATTCTTTCTGC 58.808 41.667 0.00 0.00 0.00 4.26
181 182 4.946157 GGGAGATCTTTCATTCTTTCTGCA 59.054 41.667 0.00 0.00 0.00 4.41
182 183 5.593502 GGGAGATCTTTCATTCTTTCTGCAT 59.406 40.000 0.00 0.00 0.00 3.96
183 184 6.769822 GGGAGATCTTTCATTCTTTCTGCATA 59.230 38.462 0.00 0.00 0.00 3.14
184 185 7.447853 GGGAGATCTTTCATTCTTTCTGCATAT 59.552 37.037 0.00 0.00 0.00 1.78
185 186 9.499479 GGAGATCTTTCATTCTTTCTGCATATA 57.501 33.333 0.00 0.00 0.00 0.86
189 190 8.668510 TCTTTCATTCTTTCTGCATATACTCC 57.331 34.615 0.00 0.00 0.00 3.85
190 191 7.716998 TCTTTCATTCTTTCTGCATATACTCCC 59.283 37.037 0.00 0.00 0.00 4.30
191 192 6.753913 TCATTCTTTCTGCATATACTCCCT 57.246 37.500 0.00 0.00 0.00 4.20
192 193 6.763355 TCATTCTTTCTGCATATACTCCCTC 58.237 40.000 0.00 0.00 0.00 4.30
193 194 5.552870 TTCTTTCTGCATATACTCCCTCC 57.447 43.478 0.00 0.00 0.00 4.30
194 195 3.574396 TCTTTCTGCATATACTCCCTCCG 59.426 47.826 0.00 0.00 0.00 4.63
195 196 2.677542 TCTGCATATACTCCCTCCGT 57.322 50.000 0.00 0.00 0.00 4.69
196 197 2.515854 TCTGCATATACTCCCTCCGTC 58.484 52.381 0.00 0.00 0.00 4.79
197 198 1.546476 CTGCATATACTCCCTCCGTCC 59.454 57.143 0.00 0.00 0.00 4.79
198 199 0.896226 GCATATACTCCCTCCGTCCC 59.104 60.000 0.00 0.00 0.00 4.46
199 200 1.826042 GCATATACTCCCTCCGTCCCA 60.826 57.143 0.00 0.00 0.00 4.37
200 201 2.605257 CATATACTCCCTCCGTCCCAA 58.395 52.381 0.00 0.00 0.00 4.12
201 202 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
202 203 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
203 204 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
204 205 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
205 206 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
206 207 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
207 208 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
208 209 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
209 210 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
210 211 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
211 212 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
212 213 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
213 214 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
214 215 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
215 216 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
216 217 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
217 218 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
218 219 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
219 220 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
220 221 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
221 222 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
222 223 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
223 224 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
226 227 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
227 228 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
228 229 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
229 230 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
230 231 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
231 232 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
233 234 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
257 258 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
258 259 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
259 260 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
260 261 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
261 262 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
262 263 9.555727 AATTTGTACTAAGCTCAAGACACTTAA 57.444 29.630 3.19 1.87 0.00 1.85
263 264 9.726438 ATTTGTACTAAGCTCAAGACACTTAAT 57.274 29.630 3.19 3.51 0.00 1.40
264 265 9.555727 TTTGTACTAAGCTCAAGACACTTAATT 57.444 29.630 3.19 0.00 0.00 1.40
265 266 9.555727 TTGTACTAAGCTCAAGACACTTAATTT 57.444 29.630 3.19 0.00 0.00 1.82
266 267 9.555727 TGTACTAAGCTCAAGACACTTAATTTT 57.444 29.630 3.19 0.00 0.00 1.82
269 270 9.220767 ACTAAGCTCAAGACACTTAATTTTAGG 57.779 33.333 3.19 0.00 0.00 2.69
270 271 9.436957 CTAAGCTCAAGACACTTAATTTTAGGA 57.563 33.333 0.00 0.00 0.00 2.94
271 272 8.870075 AAGCTCAAGACACTTAATTTTAGGAT 57.130 30.769 0.00 0.00 0.00 3.24
272 273 8.273780 AGCTCAAGACACTTAATTTTAGGATG 57.726 34.615 0.00 0.00 0.00 3.51
273 274 7.337942 AGCTCAAGACACTTAATTTTAGGATGG 59.662 37.037 0.00 0.00 0.00 3.51
274 275 7.415653 GCTCAAGACACTTAATTTTAGGATGGG 60.416 40.741 0.00 0.00 0.00 4.00
275 276 6.889722 TCAAGACACTTAATTTTAGGATGGGG 59.110 38.462 0.00 0.00 0.00 4.96
276 277 5.766590 AGACACTTAATTTTAGGATGGGGG 58.233 41.667 0.00 0.00 0.00 5.40
277 278 5.494706 AGACACTTAATTTTAGGATGGGGGA 59.505 40.000 0.00 0.00 0.00 4.81
292 293 5.888161 GGATGGGGGAGTATATAAAATGCTG 59.112 44.000 0.00 0.00 0.00 4.41
311 312 4.202295 TGCTGTCCATTTTTGCAATGGTTA 60.202 37.500 15.47 6.82 45.65 2.85
372 373 5.722021 AGAACTCTCCTTTCTCAAGAGTC 57.278 43.478 4.85 0.54 46.85 3.36
450 451 2.128035 GATGTAACTCCGGAATCTGCG 58.872 52.381 5.23 0.00 0.00 5.18
493 495 3.991051 CAGGCGTCACGGACTGGT 61.991 66.667 0.00 0.00 0.00 4.00
504 506 2.091588 CACGGACTGGTCGAATTTTACG 59.908 50.000 0.00 0.00 0.00 3.18
505 507 1.657094 CGGACTGGTCGAATTTTACGG 59.343 52.381 0.00 0.00 0.00 4.02
559 562 4.576053 TCACAAACTCATCACAAGAACTGG 59.424 41.667 0.00 0.00 0.00 4.00
584 587 1.804748 CGCTTCCAAGGAACAACTACC 59.195 52.381 0.00 0.00 0.00 3.18
587 590 3.412386 CTTCCAAGGAACAACTACCAGG 58.588 50.000 0.00 0.00 0.00 4.45
589 592 3.256704 TCCAAGGAACAACTACCAGGAT 58.743 45.455 0.00 0.00 31.27 3.24
590 593 3.655777 TCCAAGGAACAACTACCAGGATT 59.344 43.478 0.00 0.00 31.27 3.01
591 594 4.847512 TCCAAGGAACAACTACCAGGATTA 59.152 41.667 0.00 0.00 31.27 1.75
593 596 6.011981 TCCAAGGAACAACTACCAGGATTAAT 60.012 38.462 0.00 0.00 31.27 1.40
594 597 7.183112 TCCAAGGAACAACTACCAGGATTAATA 59.817 37.037 0.00 0.00 31.27 0.98
595 598 7.832187 CCAAGGAACAACTACCAGGATTAATAA 59.168 37.037 0.00 0.00 0.00 1.40
596 599 9.408648 CAAGGAACAACTACCAGGATTAATAAT 57.591 33.333 0.00 0.00 0.00 1.28
598 601 7.502561 AGGAACAACTACCAGGATTAATAATGC 59.497 37.037 0.00 0.00 0.00 3.56
600 603 6.068670 ACAACTACCAGGATTAATAATGCCC 58.931 40.000 0.77 0.00 0.00 5.36
602 605 4.920129 ACTACCAGGATTAATAATGCCCCT 59.080 41.667 0.77 0.00 0.00 4.79
603 606 6.095680 ACTACCAGGATTAATAATGCCCCTA 58.904 40.000 0.77 0.00 0.00 3.53
605 608 6.483888 ACCAGGATTAATAATGCCCCTATT 57.516 37.500 0.77 0.00 0.00 1.73
606 609 6.874359 ACCAGGATTAATAATGCCCCTATTT 58.126 36.000 0.77 0.00 0.00 1.40
607 610 6.954102 ACCAGGATTAATAATGCCCCTATTTC 59.046 38.462 0.77 0.00 0.00 2.17
608 611 6.095440 CCAGGATTAATAATGCCCCTATTTCG 59.905 42.308 0.77 0.00 0.00 3.46
610 613 6.884836 AGGATTAATAATGCCCCTATTTCGTC 59.115 38.462 0.77 0.00 0.00 4.20
611 614 6.183360 GGATTAATAATGCCCCTATTTCGTCG 60.183 42.308 0.00 0.00 0.00 5.12
684 687 8.025270 TCGGAAACCATCTTGGATTATTAGTA 57.975 34.615 0.00 0.00 40.96 1.82
691 694 6.431234 CCATCTTGGATTATTAGTAACCAGCC 59.569 42.308 0.00 0.00 40.96 4.85
742 745 2.362760 TGCCATGCATGACCCACC 60.363 61.111 28.31 8.96 31.71 4.61
784 791 1.560923 GCCACATGCACTCTACGTAG 58.439 55.000 16.73 16.73 40.77 3.51
785 792 1.802880 GCCACATGCACTCTACGTAGG 60.803 57.143 22.01 14.76 40.77 3.18
786 793 1.749063 CCACATGCACTCTACGTAGGA 59.251 52.381 22.01 8.42 0.00 2.94
787 794 2.223595 CCACATGCACTCTACGTAGGAG 60.224 54.545 22.01 18.43 36.92 3.69
788 795 2.423892 CACATGCACTCTACGTAGGAGT 59.576 50.000 22.01 19.01 43.81 3.85
789 796 3.626217 CACATGCACTCTACGTAGGAGTA 59.374 47.826 22.01 11.89 41.45 2.59
790 797 3.878103 ACATGCACTCTACGTAGGAGTAG 59.122 47.826 22.01 14.10 41.45 2.57
922 958 3.462982 CGTTGCCTATACAAGCACCATA 58.537 45.455 0.00 0.00 39.10 2.74
937 973 3.195825 GCACCATAGAACACACTCTAGGT 59.804 47.826 0.00 0.00 33.40 3.08
938 974 4.678309 GCACCATAGAACACACTCTAGGTC 60.678 50.000 0.00 0.00 32.05 3.85
967 1013 6.648725 ACAGAGCTGAAGTTTAATCAGAGAAC 59.351 38.462 8.44 0.00 45.74 3.01
968 1014 6.091986 CAGAGCTGAAGTTTAATCAGAGAACC 59.908 42.308 8.44 0.00 45.74 3.62
969 1015 5.869579 AGCTGAAGTTTAATCAGAGAACCA 58.130 37.500 8.44 0.00 45.74 3.67
970 1016 5.703130 AGCTGAAGTTTAATCAGAGAACCAC 59.297 40.000 8.44 0.00 45.74 4.16
971 1017 5.106515 GCTGAAGTTTAATCAGAGAACCACC 60.107 44.000 8.44 0.00 45.74 4.61
972 1018 6.187727 TGAAGTTTAATCAGAGAACCACCT 57.812 37.500 0.00 0.00 0.00 4.00
973 1019 5.997746 TGAAGTTTAATCAGAGAACCACCTG 59.002 40.000 0.00 0.00 0.00 4.00
974 1020 4.327680 AGTTTAATCAGAGAACCACCTGC 58.672 43.478 0.00 0.00 0.00 4.85
975 1021 4.042187 AGTTTAATCAGAGAACCACCTGCT 59.958 41.667 0.00 0.00 0.00 4.24
976 1022 2.486472 AATCAGAGAACCACCTGCTG 57.514 50.000 0.00 0.00 0.00 4.41
977 1023 1.649321 ATCAGAGAACCACCTGCTGA 58.351 50.000 0.00 0.00 39.61 4.26
978 1024 1.423584 TCAGAGAACCACCTGCTGAA 58.576 50.000 0.00 0.00 33.11 3.02
996 1042 1.276421 GAAGCAGAGTTAGTCCTGGCA 59.724 52.381 0.00 0.00 0.00 4.92
1035 1081 1.156736 CGATCCTGGCGTTGTTTCTT 58.843 50.000 0.00 0.00 0.00 2.52
1066 1112 2.358737 CACAGCTCGGGGGTTCAC 60.359 66.667 0.00 0.00 0.00 3.18
1158 1204 2.667473 CGTAACCGTTCCCTGATTCT 57.333 50.000 0.00 0.00 0.00 2.40
1159 1205 2.268298 CGTAACCGTTCCCTGATTCTG 58.732 52.381 0.00 0.00 0.00 3.02
1160 1206 2.007608 GTAACCGTTCCCTGATTCTGC 58.992 52.381 0.00 0.00 0.00 4.26
1161 1207 0.400213 AACCGTTCCCTGATTCTGCA 59.600 50.000 0.00 0.00 0.00 4.41
1162 1208 0.321653 ACCGTTCCCTGATTCTGCAC 60.322 55.000 0.00 0.00 0.00 4.57
1163 1209 0.321564 CCGTTCCCTGATTCTGCACA 60.322 55.000 0.00 0.00 0.00 4.57
1164 1210 1.081892 CGTTCCCTGATTCTGCACAG 58.918 55.000 0.00 0.00 0.00 3.66
1165 1211 1.338105 CGTTCCCTGATTCTGCACAGA 60.338 52.381 3.73 0.00 36.38 3.41
1166 1212 2.679059 CGTTCCCTGATTCTGCACAGAT 60.679 50.000 0.31 0.00 37.29 2.90
1167 1213 3.430790 CGTTCCCTGATTCTGCACAGATA 60.431 47.826 0.31 0.00 37.29 1.98
1168 1214 3.827008 TCCCTGATTCTGCACAGATAC 57.173 47.619 0.31 0.05 37.29 2.24
1169 1215 3.378512 TCCCTGATTCTGCACAGATACT 58.621 45.455 0.31 0.00 37.29 2.12
1170 1216 3.386078 TCCCTGATTCTGCACAGATACTC 59.614 47.826 0.31 0.61 37.29 2.59
1171 1217 3.133542 CCCTGATTCTGCACAGATACTCA 59.866 47.826 0.31 4.89 37.29 3.41
1172 1218 4.202336 CCCTGATTCTGCACAGATACTCAT 60.202 45.833 0.31 0.00 37.29 2.90
1173 1219 5.366460 CCTGATTCTGCACAGATACTCATT 58.634 41.667 0.31 0.00 37.29 2.57
1174 1220 6.463472 CCCTGATTCTGCACAGATACTCATTA 60.463 42.308 0.31 0.00 37.29 1.90
1175 1221 7.160049 CCTGATTCTGCACAGATACTCATTAT 58.840 38.462 0.31 0.00 37.29 1.28
1188 1234 8.680903 CAGATACTCATTATTCCAGTTTTGCTT 58.319 33.333 0.00 0.00 0.00 3.91
1193 1239 8.203485 ACTCATTATTCCAGTTTTGCTTCAAAA 58.797 29.630 1.05 1.05 40.41 2.44
1195 1241 8.991026 TCATTATTCCAGTTTTGCTTCAAAATG 58.009 29.630 7.81 7.39 43.66 2.32
1196 1242 8.991026 CATTATTCCAGTTTTGCTTCAAAATGA 58.009 29.630 7.81 3.84 43.66 2.57
1197 1243 8.592105 TTATTCCAGTTTTGCTTCAAAATGAG 57.408 30.769 7.81 2.57 43.66 2.90
1230 1283 1.550130 AACCGAGGCCGAGGATTTGA 61.550 55.000 23.55 0.00 38.22 2.69
1231 1284 1.220749 CCGAGGCCGAGGATTTGAA 59.779 57.895 13.48 0.00 38.22 2.69
1241 1294 2.679639 CGAGGATTTGAATCGGGGAACA 60.680 50.000 0.00 0.00 36.27 3.18
1243 1296 3.761752 GAGGATTTGAATCGGGGAACAAA 59.238 43.478 0.00 0.00 36.27 2.83
1252 1305 5.646360 TGAATCGGGGAACAAATTCTTAGAC 59.354 40.000 0.00 0.00 35.18 2.59
1254 1307 4.975631 TCGGGGAACAAATTCTTAGACAA 58.024 39.130 0.00 0.00 34.98 3.18
1255 1308 5.566469 TCGGGGAACAAATTCTTAGACAAT 58.434 37.500 0.00 0.00 34.98 2.71
1256 1309 6.007703 TCGGGGAACAAATTCTTAGACAATT 58.992 36.000 0.00 0.00 34.98 2.32
1257 1310 6.072175 TCGGGGAACAAATTCTTAGACAATTG 60.072 38.462 3.24 3.24 34.98 2.32
1258 1311 6.294508 CGGGGAACAAATTCTTAGACAATTGT 60.295 38.462 11.78 11.78 34.98 2.71
1443 1499 2.125673 GGGACGTCCATCACCGTG 60.126 66.667 34.40 0.00 37.44 4.94
1728 1787 0.464735 CGGTGAAGGGTTCCAACACA 60.465 55.000 0.00 0.00 35.08 3.72
1909 1968 4.153835 CGTCTTCCGTCAACTTCTACTAGT 59.846 45.833 0.00 0.00 0.00 2.57
1913 1972 3.681897 TCCGTCAACTTCTACTAGTCGAC 59.318 47.826 7.70 7.70 30.48 4.20
1954 2013 2.813907 ACACTAGTCCAGACATCTGCT 58.186 47.619 3.18 0.00 42.47 4.24
1974 2033 3.172575 CGCTAGTGCACGTCCACG 61.173 66.667 12.01 8.69 46.33 4.94
2078 2137 9.752274 CATCTCTTATTTGTTCTCTTTTCTTCG 57.248 33.333 0.00 0.00 0.00 3.79
2092 2151 6.976088 TCTTTTCTTCGCATCAACCAAATTA 58.024 32.000 0.00 0.00 0.00 1.40
2121 2180 9.905713 ATGTGGTATCTGTATCACTTACAAATT 57.094 29.630 1.15 0.00 41.55 1.82
2123 2182 8.612619 GTGGTATCTGTATCACTTACAAATTGG 58.387 37.037 0.00 0.00 40.27 3.16
2132 2191 9.120538 GTATCACTTACAAATTGGTGATATGGT 57.879 33.333 19.09 4.15 46.35 3.55
2162 2221 1.953138 GCAGGGCGATGTCTCATCG 60.953 63.158 22.35 22.35 43.72 3.84
2230 2289 1.604378 CTCAACATCCGCTCCCCTT 59.396 57.895 0.00 0.00 0.00 3.95
2240 2299 2.922234 CTCCCCTTGCTCATCCCC 59.078 66.667 0.00 0.00 0.00 4.81
2246 2305 1.452651 CTTGCTCATCCCCGCATGT 60.453 57.895 0.00 0.00 35.85 3.21
2248 2307 0.254462 TTGCTCATCCCCGCATGTAA 59.746 50.000 0.00 0.00 35.85 2.41
2249 2308 0.473755 TGCTCATCCCCGCATGTAAT 59.526 50.000 0.00 0.00 0.00 1.89
2250 2309 1.133823 TGCTCATCCCCGCATGTAATT 60.134 47.619 0.00 0.00 0.00 1.40
2251 2310 2.105649 TGCTCATCCCCGCATGTAATTA 59.894 45.455 0.00 0.00 0.00 1.40
2254 2313 4.218417 GCTCATCCCCGCATGTAATTAAAT 59.782 41.667 0.00 0.00 0.00 1.40
2255 2314 5.278957 GCTCATCCCCGCATGTAATTAAATT 60.279 40.000 0.00 0.00 0.00 1.82
2256 2315 6.072175 GCTCATCCCCGCATGTAATTAAATTA 60.072 38.462 0.00 0.00 0.00 1.40
2257 2316 7.523052 GCTCATCCCCGCATGTAATTAAATTAA 60.523 37.037 0.00 0.00 0.00 1.40
2259 2318 8.865090 TCATCCCCGCATGTAATTAAATTAAAT 58.135 29.630 0.00 0.00 0.00 1.40
2260 2319 9.487790 CATCCCCGCATGTAATTAAATTAAATT 57.512 29.630 0.00 0.00 33.69 1.82
2281 2356 8.514136 AAATTAAATTTTGAATCGCGTGAAGA 57.486 26.923 5.77 0.00 0.00 2.87
2312 2387 3.145667 AGATGATAGGGGTCCTCCTGATT 59.854 47.826 8.72 0.00 37.75 2.57
2314 2389 1.981495 GATAGGGGTCCTCCTGATTGG 59.019 57.143 8.72 0.00 37.75 3.16
2371 2447 4.649674 CCTACATCTTAGTCCAGCCAGTTA 59.350 45.833 0.00 0.00 0.00 2.24
2398 2476 2.278854 GAAGAGATGCTGACAGGAAGC 58.721 52.381 0.00 0.00 41.22 3.86
2402 2480 1.703438 GATGCTGACAGGAAGCGCAG 61.703 60.000 11.47 0.00 43.88 5.18
2458 2540 2.480555 GGATTCACGCTGCAACCG 59.519 61.111 0.00 5.02 0.00 4.44
2471 2553 1.007387 CAACCGGAGCTTGTTTGCC 60.007 57.895 9.46 0.00 0.00 4.52
2490 2572 2.444256 GCTACCCTCTCGCCCCATT 61.444 63.158 0.00 0.00 0.00 3.16
2514 2596 1.646189 GAGATCACAACGAGGGAAGC 58.354 55.000 0.00 0.00 29.94 3.86
2517 2599 2.521958 ATCACAACGAGGGAAGCGGG 62.522 60.000 0.00 0.00 29.94 6.13
2521 2603 1.909781 AACGAGGGAAGCGGGTGTA 60.910 57.895 0.00 0.00 0.00 2.90
2532 2614 1.861542 GCGGGTGTAATTGTGCAGCA 61.862 55.000 0.00 0.00 39.36 4.41
2623 2715 1.672356 GGACCGACATTGCAGCAGT 60.672 57.895 0.00 0.00 0.00 4.40
2629 2721 1.059692 CGACATTGCAGCAGTAGTTCG 59.940 52.381 0.00 0.00 0.00 3.95
2640 2732 0.810016 AGTAGTTCGCGAGAGGTTCC 59.190 55.000 9.59 0.00 43.69 3.62
2643 2735 1.800713 GTTCGCGAGAGGTTCCGTC 60.801 63.158 9.59 0.00 43.69 4.79
2670 2762 3.010027 TCAGGTGGCAGAAATATGGACAA 59.990 43.478 0.00 0.00 0.00 3.18
2690 2782 4.216257 ACAAACTCCATTCTTTGATGACGG 59.784 41.667 0.00 0.00 32.63 4.79
2693 2785 2.611292 CTCCATTCTTTGATGACGGAGC 59.389 50.000 0.00 0.00 32.54 4.70
2706 2800 0.605319 ACGGAGCGCAATTCAGGAAA 60.605 50.000 11.47 0.00 0.00 3.13
2725 2819 0.033601 ATGAGGTCTCTGCTCGTCCT 60.034 55.000 0.00 0.00 0.00 3.85
2743 2837 1.962807 CCTGCCACCTTCACAAATCAA 59.037 47.619 0.00 0.00 0.00 2.57
2746 2840 1.337167 GCCACCTTCACAAATCAAGCC 60.337 52.381 0.00 0.00 0.00 4.35
2750 2844 2.749621 ACCTTCACAAATCAAGCCGATC 59.250 45.455 0.00 0.00 31.11 3.69
2752 2846 3.181503 CCTTCACAAATCAAGCCGATCAG 60.182 47.826 0.00 0.00 31.11 2.90
2787 2887 3.156157 CTGGAGAAGCTGCTTGAGG 57.844 57.895 21.25 1.65 0.00 3.86
2797 2897 0.250234 CTGCTTGAGGATTCGGGTGA 59.750 55.000 0.00 0.00 0.00 4.02
2815 2915 0.462759 GATGGGAAGCCGAGGAACTG 60.463 60.000 0.00 0.00 41.55 3.16
2818 2918 2.815647 GAAGCCGAGGAACTGCCG 60.816 66.667 0.00 0.00 41.55 5.69
2850 2963 0.958822 GCCGGTGAATGGTGTCTTTT 59.041 50.000 1.90 0.00 0.00 2.27
2851 2964 1.339929 GCCGGTGAATGGTGTCTTTTT 59.660 47.619 1.90 0.00 0.00 1.94
2869 2982 2.061182 TTTTACCGCGGCACAACCAC 62.061 55.000 28.58 0.00 39.03 4.16
2889 3002 0.518636 CGTTGTGGTGGCAGATTCTG 59.481 55.000 9.40 9.40 34.12 3.02
2901 3014 5.533903 GTGGCAGATTCTGATGGTCAAATAT 59.466 40.000 17.87 0.00 32.44 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.830370 CTCAATGGGCTTCCGGGC 60.830 66.667 0.00 0.00 40.05 6.13
18 19 2.124151 CCTCAATGGGCTTCCGGG 60.124 66.667 0.00 0.00 0.00 5.73
19 20 1.153086 CTCCTCAATGGGCTTCCGG 60.153 63.158 0.00 0.00 36.20 5.14
20 21 0.253044 TTCTCCTCAATGGGCTTCCG 59.747 55.000 0.00 0.00 36.20 4.30
21 22 1.756430 GTTCTCCTCAATGGGCTTCC 58.244 55.000 0.00 0.00 36.20 3.46
22 23 1.373570 CGTTCTCCTCAATGGGCTTC 58.626 55.000 0.00 0.00 36.20 3.86
23 24 0.678048 GCGTTCTCCTCAATGGGCTT 60.678 55.000 0.00 0.00 36.20 4.35
24 25 1.078143 GCGTTCTCCTCAATGGGCT 60.078 57.895 0.00 0.00 36.20 5.19
25 26 2.464459 CGCGTTCTCCTCAATGGGC 61.464 63.158 0.00 0.00 36.20 5.36
26 27 2.464459 GCGCGTTCTCCTCAATGGG 61.464 63.158 8.43 0.00 36.20 4.00
27 28 2.802667 CGCGCGTTCTCCTCAATGG 61.803 63.158 24.19 0.00 37.10 3.16
28 29 1.351430 TTCGCGCGTTCTCCTCAATG 61.351 55.000 30.98 0.00 0.00 2.82
29 30 1.078759 CTTCGCGCGTTCTCCTCAAT 61.079 55.000 30.98 0.00 0.00 2.57
30 31 1.733041 CTTCGCGCGTTCTCCTCAA 60.733 57.895 30.98 12.94 0.00 3.02
31 32 2.126463 CTTCGCGCGTTCTCCTCA 60.126 61.111 30.98 4.20 0.00 3.86
32 33 1.870016 CTCTTCGCGCGTTCTCCTC 60.870 63.158 30.98 0.00 0.00 3.71
33 34 2.179517 CTCTTCGCGCGTTCTCCT 59.820 61.111 30.98 0.00 0.00 3.69
34 35 2.615262 ATCCTCTTCGCGCGTTCTCC 62.615 60.000 30.98 0.00 0.00 3.71
35 36 1.203600 GATCCTCTTCGCGCGTTCTC 61.204 60.000 30.98 13.59 0.00 2.87
36 37 1.226717 GATCCTCTTCGCGCGTTCT 60.227 57.895 30.98 8.53 0.00 3.01
37 38 1.076533 TTGATCCTCTTCGCGCGTTC 61.077 55.000 30.98 15.42 0.00 3.95
38 39 0.460284 ATTGATCCTCTTCGCGCGTT 60.460 50.000 30.98 6.85 0.00 4.84
39 40 0.460284 AATTGATCCTCTTCGCGCGT 60.460 50.000 30.98 8.38 0.00 6.01
40 41 0.042708 CAATTGATCCTCTTCGCGCG 60.043 55.000 26.76 26.76 0.00 6.86
41 42 1.009829 ACAATTGATCCTCTTCGCGC 58.990 50.000 13.59 0.00 0.00 6.86
42 43 4.783450 GCTTAACAATTGATCCTCTTCGCG 60.783 45.833 13.59 0.00 0.00 5.87
43 44 4.333926 AGCTTAACAATTGATCCTCTTCGC 59.666 41.667 13.59 2.01 0.00 4.70
44 45 5.582269 TCAGCTTAACAATTGATCCTCTTCG 59.418 40.000 13.59 0.00 0.00 3.79
45 46 6.992063 TCAGCTTAACAATTGATCCTCTTC 57.008 37.500 13.59 0.00 0.00 2.87
46 47 7.395489 ACATTCAGCTTAACAATTGATCCTCTT 59.605 33.333 13.59 0.00 0.00 2.85
47 48 6.888632 ACATTCAGCTTAACAATTGATCCTCT 59.111 34.615 13.59 0.65 0.00 3.69
48 49 7.093322 ACATTCAGCTTAACAATTGATCCTC 57.907 36.000 13.59 0.00 0.00 3.71
49 50 8.757982 ATACATTCAGCTTAACAATTGATCCT 57.242 30.769 13.59 0.00 0.00 3.24
50 51 8.623903 TGATACATTCAGCTTAACAATTGATCC 58.376 33.333 13.59 0.00 0.00 3.36
52 53 9.961265 CATGATACATTCAGCTTAACAATTGAT 57.039 29.630 13.59 2.25 37.89 2.57
53 54 7.916977 GCATGATACATTCAGCTTAACAATTGA 59.083 33.333 13.59 0.00 37.89 2.57
54 55 7.703197 TGCATGATACATTCAGCTTAACAATTG 59.297 33.333 3.24 3.24 37.89 2.32
55 56 7.774134 TGCATGATACATTCAGCTTAACAATT 58.226 30.769 0.00 0.00 37.89 2.32
56 57 7.337480 TGCATGATACATTCAGCTTAACAAT 57.663 32.000 0.00 0.00 37.89 2.71
57 58 6.756299 TGCATGATACATTCAGCTTAACAA 57.244 33.333 0.00 0.00 37.89 2.83
58 59 6.319405 ACATGCATGATACATTCAGCTTAACA 59.681 34.615 32.75 0.00 37.89 2.41
59 60 6.635641 CACATGCATGATACATTCAGCTTAAC 59.364 38.462 32.75 0.00 37.89 2.01
60 61 6.543100 TCACATGCATGATACATTCAGCTTAA 59.457 34.615 32.75 0.00 37.89 1.85
61 62 6.017687 GTCACATGCATGATACATTCAGCTTA 60.018 38.462 32.75 0.00 37.89 3.09
62 63 4.885325 TCACATGCATGATACATTCAGCTT 59.115 37.500 32.75 2.54 37.89 3.74
63 64 4.275196 GTCACATGCATGATACATTCAGCT 59.725 41.667 32.75 2.76 37.89 4.24
64 65 4.035909 TGTCACATGCATGATACATTCAGC 59.964 41.667 32.75 10.37 37.89 4.26
65 66 5.526111 TCTGTCACATGCATGATACATTCAG 59.474 40.000 32.75 24.10 37.89 3.02
66 67 5.430007 TCTGTCACATGCATGATACATTCA 58.570 37.500 32.75 17.11 39.12 2.57
67 68 5.756833 TCTCTGTCACATGCATGATACATTC 59.243 40.000 32.75 14.56 0.00 2.67
68 69 5.677567 TCTCTGTCACATGCATGATACATT 58.322 37.500 32.75 6.55 0.00 2.71
69 70 5.286267 TCTCTGTCACATGCATGATACAT 57.714 39.130 32.75 7.36 0.00 2.29
70 71 4.741321 TCTCTGTCACATGCATGATACA 57.259 40.909 32.75 28.63 0.00 2.29
71 72 6.128607 GCTATTCTCTGTCACATGCATGATAC 60.129 42.308 32.75 26.07 0.00 2.24
72 73 5.930569 GCTATTCTCTGTCACATGCATGATA 59.069 40.000 32.75 16.74 0.00 2.15
73 74 4.755629 GCTATTCTCTGTCACATGCATGAT 59.244 41.667 32.75 14.29 0.00 2.45
74 75 4.124970 GCTATTCTCTGTCACATGCATGA 58.875 43.478 32.75 10.12 0.00 3.07
75 76 3.875134 TGCTATTCTCTGTCACATGCATG 59.125 43.478 25.09 25.09 0.00 4.06
76 77 4.127907 CTGCTATTCTCTGTCACATGCAT 58.872 43.478 0.00 0.00 0.00 3.96
77 78 3.196254 TCTGCTATTCTCTGTCACATGCA 59.804 43.478 0.00 0.00 0.00 3.96
78 79 3.790091 TCTGCTATTCTCTGTCACATGC 58.210 45.455 0.00 0.00 0.00 4.06
79 80 4.680567 CGATCTGCTATTCTCTGTCACATG 59.319 45.833 0.00 0.00 0.00 3.21
80 81 4.340666 ACGATCTGCTATTCTCTGTCACAT 59.659 41.667 0.00 0.00 0.00 3.21
81 82 3.696548 ACGATCTGCTATTCTCTGTCACA 59.303 43.478 0.00 0.00 0.00 3.58
82 83 4.041049 CACGATCTGCTATTCTCTGTCAC 58.959 47.826 0.00 0.00 0.00 3.67
83 84 3.696548 ACACGATCTGCTATTCTCTGTCA 59.303 43.478 0.00 0.00 0.00 3.58
84 85 4.300189 ACACGATCTGCTATTCTCTGTC 57.700 45.455 0.00 0.00 0.00 3.51
85 86 5.532779 TCATACACGATCTGCTATTCTCTGT 59.467 40.000 0.00 0.00 0.00 3.41
86 87 6.006759 TCATACACGATCTGCTATTCTCTG 57.993 41.667 0.00 0.00 0.00 3.35
87 88 5.767665 ACTCATACACGATCTGCTATTCTCT 59.232 40.000 0.00 0.00 0.00 3.10
88 89 6.007936 ACTCATACACGATCTGCTATTCTC 57.992 41.667 0.00 0.00 0.00 2.87
89 90 7.695480 ATACTCATACACGATCTGCTATTCT 57.305 36.000 0.00 0.00 0.00 2.40
90 91 7.636745 CGTATACTCATACACGATCTGCTATTC 59.363 40.741 0.56 0.00 37.47 1.75
91 92 7.414208 CCGTATACTCATACACGATCTGCTATT 60.414 40.741 0.56 0.00 37.47 1.73
92 93 6.037281 CCGTATACTCATACACGATCTGCTAT 59.963 42.308 0.56 0.00 37.47 2.97
93 94 5.350640 CCGTATACTCATACACGATCTGCTA 59.649 44.000 0.56 0.00 37.47 3.49
94 95 4.154375 CCGTATACTCATACACGATCTGCT 59.846 45.833 0.56 0.00 37.47 4.24
95 96 4.153655 TCCGTATACTCATACACGATCTGC 59.846 45.833 0.56 0.00 37.47 4.26
96 97 5.638234 TCTCCGTATACTCATACACGATCTG 59.362 44.000 0.56 0.00 37.47 2.90
97 98 5.791666 TCTCCGTATACTCATACACGATCT 58.208 41.667 0.56 0.00 37.47 2.75
98 99 6.535865 AGATCTCCGTATACTCATACACGATC 59.464 42.308 0.56 0.00 37.47 3.69
99 100 6.408035 AGATCTCCGTATACTCATACACGAT 58.592 40.000 0.56 0.00 37.47 3.73
100 101 5.791666 AGATCTCCGTATACTCATACACGA 58.208 41.667 0.56 0.00 37.47 4.35
101 102 6.483385 AAGATCTCCGTATACTCATACACG 57.517 41.667 0.00 0.00 37.47 4.49
102 103 7.872881 TGAAAGATCTCCGTATACTCATACAC 58.127 38.462 0.00 0.00 37.47 2.90
103 104 8.637196 ATGAAAGATCTCCGTATACTCATACA 57.363 34.615 0.00 0.00 37.47 2.29
104 105 9.562583 GAATGAAAGATCTCCGTATACTCATAC 57.437 37.037 0.00 0.00 34.75 2.39
105 106 9.521841 AGAATGAAAGATCTCCGTATACTCATA 57.478 33.333 0.00 0.00 0.00 2.15
106 107 8.415950 AGAATGAAAGATCTCCGTATACTCAT 57.584 34.615 0.00 0.00 0.00 2.90
107 108 7.825331 AGAATGAAAGATCTCCGTATACTCA 57.175 36.000 0.00 0.00 0.00 3.41
108 109 8.573035 AGAAGAATGAAAGATCTCCGTATACTC 58.427 37.037 0.00 0.00 0.00 2.59
109 110 8.472007 AGAAGAATGAAAGATCTCCGTATACT 57.528 34.615 0.00 0.00 0.00 2.12
110 111 8.573035 AGAGAAGAATGAAAGATCTCCGTATAC 58.427 37.037 0.00 0.00 37.77 1.47
111 112 8.698973 AGAGAAGAATGAAAGATCTCCGTATA 57.301 34.615 0.00 0.00 37.77 1.47
112 113 7.595819 AGAGAAGAATGAAAGATCTCCGTAT 57.404 36.000 0.00 0.00 37.77 3.06
113 114 7.411486 AAGAGAAGAATGAAAGATCTCCGTA 57.589 36.000 0.00 0.00 37.77 4.02
114 115 5.930837 AGAGAAGAATGAAAGATCTCCGT 57.069 39.130 0.00 0.00 37.77 4.69
115 116 7.548780 AGAAAAGAGAAGAATGAAAGATCTCCG 59.451 37.037 0.00 0.00 37.77 4.63
116 117 8.791327 AGAAAAGAGAAGAATGAAAGATCTCC 57.209 34.615 0.00 0.00 37.77 3.71
148 149 5.492855 TGAAAGATCTCCCTCCGTAAAAA 57.507 39.130 0.00 0.00 0.00 1.94
149 150 5.693769 ATGAAAGATCTCCCTCCGTAAAA 57.306 39.130 0.00 0.00 0.00 1.52
150 151 5.425539 AGAATGAAAGATCTCCCTCCGTAAA 59.574 40.000 0.00 0.00 0.00 2.01
151 152 4.962995 AGAATGAAAGATCTCCCTCCGTAA 59.037 41.667 0.00 0.00 0.00 3.18
152 153 4.547671 AGAATGAAAGATCTCCCTCCGTA 58.452 43.478 0.00 0.00 0.00 4.02
153 154 3.379452 AGAATGAAAGATCTCCCTCCGT 58.621 45.455 0.00 0.00 0.00 4.69
154 155 4.414337 AAGAATGAAAGATCTCCCTCCG 57.586 45.455 0.00 0.00 0.00 4.63
155 156 5.821995 CAGAAAGAATGAAAGATCTCCCTCC 59.178 44.000 0.00 0.00 0.00 4.30
156 157 5.296531 GCAGAAAGAATGAAAGATCTCCCTC 59.703 44.000 0.00 0.00 0.00 4.30
157 158 5.192176 GCAGAAAGAATGAAAGATCTCCCT 58.808 41.667 0.00 0.00 0.00 4.20
158 159 4.946157 TGCAGAAAGAATGAAAGATCTCCC 59.054 41.667 0.00 0.00 0.00 4.30
159 160 6.696441 ATGCAGAAAGAATGAAAGATCTCC 57.304 37.500 0.00 0.00 0.00 3.71
163 164 9.282569 GGAGTATATGCAGAAAGAATGAAAGAT 57.717 33.333 0.00 0.00 0.00 2.40
164 165 7.716998 GGGAGTATATGCAGAAAGAATGAAAGA 59.283 37.037 0.00 0.00 0.00 2.52
165 166 7.718753 AGGGAGTATATGCAGAAAGAATGAAAG 59.281 37.037 0.00 0.00 0.00 2.62
166 167 7.577303 AGGGAGTATATGCAGAAAGAATGAAA 58.423 34.615 0.00 0.00 0.00 2.69
167 168 7.141758 AGGGAGTATATGCAGAAAGAATGAA 57.858 36.000 0.00 0.00 0.00 2.57
168 169 6.239714 GGAGGGAGTATATGCAGAAAGAATGA 60.240 42.308 0.00 0.00 0.00 2.57
169 170 5.936956 GGAGGGAGTATATGCAGAAAGAATG 59.063 44.000 0.00 0.00 0.00 2.67
170 171 5.279708 CGGAGGGAGTATATGCAGAAAGAAT 60.280 44.000 0.00 0.00 0.00 2.40
171 172 4.039245 CGGAGGGAGTATATGCAGAAAGAA 59.961 45.833 0.00 0.00 0.00 2.52
172 173 3.574396 CGGAGGGAGTATATGCAGAAAGA 59.426 47.826 0.00 0.00 0.00 2.52
173 174 3.322254 ACGGAGGGAGTATATGCAGAAAG 59.678 47.826 0.00 0.00 0.00 2.62
174 175 3.305720 ACGGAGGGAGTATATGCAGAAA 58.694 45.455 0.00 0.00 0.00 2.52
175 176 2.891580 GACGGAGGGAGTATATGCAGAA 59.108 50.000 0.00 0.00 0.00 3.02
176 177 2.515854 GACGGAGGGAGTATATGCAGA 58.484 52.381 0.00 0.00 0.00 4.26
177 178 1.546476 GGACGGAGGGAGTATATGCAG 59.454 57.143 0.00 0.00 0.00 4.41
178 179 1.629043 GGACGGAGGGAGTATATGCA 58.371 55.000 0.00 0.00 0.00 3.96
179 180 0.896226 GGGACGGAGGGAGTATATGC 59.104 60.000 0.00 0.00 0.00 3.14
180 181 2.304221 TGGGACGGAGGGAGTATATG 57.696 55.000 0.00 0.00 0.00 1.78
181 182 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
182 183 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
183 184 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
184 185 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
185 186 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
186 187 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
187 188 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
188 189 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
189 190 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
190 191 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
191 192 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
192 193 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
193 194 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
194 195 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
195 196 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
196 197 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
197 198 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
200 201 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
201 202 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
202 203 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
203 204 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
204 205 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
205 206 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
206 207 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
207 208 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
208 209 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
232 233 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
233 234 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
234 235 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
235 236 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
236 237 9.555727 TTAAGTGTCTTGAGCTTAGTACAAATT 57.444 29.630 0.00 0.00 0.00 1.82
237 238 9.726438 ATTAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
238 239 9.555727 AATTAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
239 240 9.555727 AAATTAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
240 241 9.555727 AAAATTAAGTGTCTTGAGCTTAGTACA 57.444 29.630 0.00 0.00 0.00 2.90
243 244 9.220767 CCTAAAATTAAGTGTCTTGAGCTTAGT 57.779 33.333 0.00 0.00 0.00 2.24
244 245 9.436957 TCCTAAAATTAAGTGTCTTGAGCTTAG 57.563 33.333 0.00 0.00 0.00 2.18
245 246 9.959721 ATCCTAAAATTAAGTGTCTTGAGCTTA 57.040 29.630 0.00 0.00 0.00 3.09
246 247 8.734386 CATCCTAAAATTAAGTGTCTTGAGCTT 58.266 33.333 0.00 0.00 0.00 3.74
247 248 7.337942 CCATCCTAAAATTAAGTGTCTTGAGCT 59.662 37.037 0.00 0.00 0.00 4.09
248 249 7.415653 CCCATCCTAAAATTAAGTGTCTTGAGC 60.416 40.741 0.00 0.00 0.00 4.26
249 250 7.067494 CCCCATCCTAAAATTAAGTGTCTTGAG 59.933 40.741 0.00 0.00 0.00 3.02
250 251 6.889722 CCCCATCCTAAAATTAAGTGTCTTGA 59.110 38.462 0.00 0.00 0.00 3.02
251 252 6.096846 CCCCCATCCTAAAATTAAGTGTCTTG 59.903 42.308 0.00 0.00 0.00 3.02
252 253 6.011096 TCCCCCATCCTAAAATTAAGTGTCTT 60.011 38.462 0.00 0.00 0.00 3.01
253 254 5.494706 TCCCCCATCCTAAAATTAAGTGTCT 59.505 40.000 0.00 0.00 0.00 3.41
254 255 5.762279 TCCCCCATCCTAAAATTAAGTGTC 58.238 41.667 0.00 0.00 0.00 3.67
255 256 5.255443 ACTCCCCCATCCTAAAATTAAGTGT 59.745 40.000 0.00 0.00 0.00 3.55
256 257 5.766590 ACTCCCCCATCCTAAAATTAAGTG 58.233 41.667 0.00 0.00 0.00 3.16
257 258 7.723109 ATACTCCCCCATCCTAAAATTAAGT 57.277 36.000 0.00 0.00 0.00 2.24
264 265 8.113462 GCATTTTATATACTCCCCCATCCTAAA 58.887 37.037 0.00 0.00 0.00 1.85
265 266 7.464265 AGCATTTTATATACTCCCCCATCCTAA 59.536 37.037 0.00 0.00 0.00 2.69
266 267 6.971840 AGCATTTTATATACTCCCCCATCCTA 59.028 38.462 0.00 0.00 0.00 2.94
267 268 5.797987 AGCATTTTATATACTCCCCCATCCT 59.202 40.000 0.00 0.00 0.00 3.24
268 269 5.888161 CAGCATTTTATATACTCCCCCATCC 59.112 44.000 0.00 0.00 0.00 3.51
269 270 6.485171 ACAGCATTTTATATACTCCCCCATC 58.515 40.000 0.00 0.00 0.00 3.51
270 271 6.468972 ACAGCATTTTATATACTCCCCCAT 57.531 37.500 0.00 0.00 0.00 4.00
271 272 5.222048 GGACAGCATTTTATATACTCCCCCA 60.222 44.000 0.00 0.00 0.00 4.96
272 273 5.222048 TGGACAGCATTTTATATACTCCCCC 60.222 44.000 0.00 0.00 0.00 5.40
273 274 5.876357 TGGACAGCATTTTATATACTCCCC 58.124 41.667 0.00 0.00 0.00 4.81
274 275 8.409358 AAATGGACAGCATTTTATATACTCCC 57.591 34.615 0.00 0.00 0.00 4.30
277 278 9.533253 GCAAAAATGGACAGCATTTTATATACT 57.467 29.630 0.00 0.00 40.19 2.12
285 286 5.365403 CATTGCAAAAATGGACAGCATTT 57.635 34.783 1.71 0.00 34.87 2.32
330 331 9.914131 GAGTTCTTTGCTGGAATAAATTTAGTT 57.086 29.630 3.94 0.00 0.00 2.24
334 335 7.452813 AGGAGAGTTCTTTGCTGGAATAAATTT 59.547 33.333 0.00 0.00 0.00 1.82
372 373 1.746615 CTGCCGGGGACAACAGATG 60.747 63.158 2.18 0.00 35.49 2.90
450 451 6.321181 TCATTTTTATGTAGCCATTGGTCCTC 59.679 38.462 4.26 0.00 32.29 3.71
493 495 5.794726 TCTCCATATCCCGTAAAATTCGA 57.205 39.130 0.00 0.00 0.00 3.71
504 506 2.731572 CCCATGCATTCTCCATATCCC 58.268 52.381 0.00 0.00 0.00 3.85
505 507 2.097825 GCCCATGCATTCTCCATATCC 58.902 52.381 0.00 0.00 37.47 2.59
521 524 3.068064 TGATCACGAGAGCGCCCA 61.068 61.111 2.29 0.00 42.48 5.36
559 562 1.878953 TGTTCCTTGGAAGCGAGTTC 58.121 50.000 1.83 0.00 0.00 3.01
584 587 6.659242 ACGAAATAGGGGCATTATTAATCCTG 59.341 38.462 0.00 0.00 0.00 3.86
587 590 6.592607 TCGACGAAATAGGGGCATTATTAATC 59.407 38.462 0.00 0.00 0.00 1.75
589 592 5.856156 TCGACGAAATAGGGGCATTATTAA 58.144 37.500 0.00 0.00 0.00 1.40
590 593 5.471556 TCGACGAAATAGGGGCATTATTA 57.528 39.130 0.00 0.00 0.00 0.98
591 594 4.345859 TCGACGAAATAGGGGCATTATT 57.654 40.909 0.00 0.00 0.00 1.40
593 596 5.471556 TTATCGACGAAATAGGGGCATTA 57.528 39.130 0.00 0.00 0.00 1.90
594 597 2.930826 ATCGACGAAATAGGGGCATT 57.069 45.000 0.00 0.00 0.00 3.56
595 598 4.253685 CATTATCGACGAAATAGGGGCAT 58.746 43.478 0.00 0.00 0.00 4.40
596 599 3.659786 CATTATCGACGAAATAGGGGCA 58.340 45.455 0.00 0.00 0.00 5.36
598 601 3.000727 GGCATTATCGACGAAATAGGGG 58.999 50.000 0.00 0.00 0.00 4.79
600 603 3.000727 GGGGCATTATCGACGAAATAGG 58.999 50.000 0.00 0.00 0.00 2.57
602 605 3.755112 TGGGGCATTATCGACGAAATA 57.245 42.857 0.00 0.00 0.00 1.40
603 606 2.631160 TGGGGCATTATCGACGAAAT 57.369 45.000 0.00 0.60 0.00 2.17
605 608 1.270625 GGATGGGGCATTATCGACGAA 60.271 52.381 0.00 0.00 0.00 3.85
606 609 0.320374 GGATGGGGCATTATCGACGA 59.680 55.000 0.00 0.00 0.00 4.20
607 610 0.673644 GGGATGGGGCATTATCGACG 60.674 60.000 0.00 0.00 0.00 5.12
608 611 0.400213 TGGGATGGGGCATTATCGAC 59.600 55.000 0.00 0.00 0.00 4.20
610 613 0.692476 TCTGGGATGGGGCATTATCG 59.308 55.000 0.00 0.00 0.00 2.92
611 614 4.803329 ATATCTGGGATGGGGCATTATC 57.197 45.455 0.00 0.00 0.00 1.75
742 745 6.980397 GGCCTCATTTGTTTACTGGATTAATG 59.020 38.462 0.00 0.00 0.00 1.90
784 791 6.810676 CACTGATCATGCATATGTACTACTCC 59.189 42.308 0.00 0.00 35.73 3.85
785 792 7.597386 TCACTGATCATGCATATGTACTACTC 58.403 38.462 0.00 0.00 35.73 2.59
786 793 7.530426 TCACTGATCATGCATATGTACTACT 57.470 36.000 0.00 0.00 35.73 2.57
787 794 7.490725 GGATCACTGATCATGCATATGTACTAC 59.509 40.741 18.77 0.00 40.50 2.73
788 795 7.398332 AGGATCACTGATCATGCATATGTACTA 59.602 37.037 18.77 0.00 40.50 1.82
789 796 6.212993 AGGATCACTGATCATGCATATGTACT 59.787 38.462 18.77 1.85 40.50 2.73
790 797 6.404708 AGGATCACTGATCATGCATATGTAC 58.595 40.000 18.77 0.00 40.50 2.90
866 873 0.321387 GGAGTTCTGTTTCCGTCCCC 60.321 60.000 0.00 0.00 0.00 4.81
881 888 3.842923 CGGCGAGCTGATGGGAGT 61.843 66.667 0.00 0.00 0.00 3.85
904 940 4.163268 TGTTCTATGGTGCTTGTATAGGCA 59.837 41.667 0.00 0.00 36.01 4.75
912 948 3.668447 AGAGTGTGTTCTATGGTGCTTG 58.332 45.455 0.00 0.00 0.00 4.01
922 958 1.617322 TGCGACCTAGAGTGTGTTCT 58.383 50.000 0.00 0.00 0.00 3.01
937 973 1.953559 AAACTTCAGCTCTGTTGCGA 58.046 45.000 0.00 0.00 38.13 5.10
938 974 3.878086 TTAAACTTCAGCTCTGTTGCG 57.122 42.857 0.00 0.00 38.13 4.85
973 1019 2.615869 CAGGACTAACTCTGCTTCAGC 58.384 52.381 0.00 0.00 42.50 4.26
974 1020 2.676463 GCCAGGACTAACTCTGCTTCAG 60.676 54.545 0.00 0.00 0.00 3.02
975 1021 1.276421 GCCAGGACTAACTCTGCTTCA 59.724 52.381 0.00 0.00 0.00 3.02
976 1022 1.276421 TGCCAGGACTAACTCTGCTTC 59.724 52.381 0.00 0.00 0.00 3.86
977 1023 1.352083 TGCCAGGACTAACTCTGCTT 58.648 50.000 0.00 0.00 0.00 3.91
978 1024 1.352083 TTGCCAGGACTAACTCTGCT 58.648 50.000 0.00 0.00 0.00 4.24
987 1033 1.067295 TCTCCATGTTTGCCAGGACT 58.933 50.000 0.00 0.00 0.00 3.85
996 1042 2.868583 CGCGAGATGATTCTCCATGTTT 59.131 45.455 0.00 0.00 44.76 2.83
1149 1195 3.133542 TGAGTATCTGTGCAGAATCAGGG 59.866 47.826 5.95 0.00 41.36 4.45
1158 1204 6.239217 ACTGGAATAATGAGTATCTGTGCA 57.761 37.500 0.00 0.00 34.92 4.57
1159 1205 7.559590 AAACTGGAATAATGAGTATCTGTGC 57.440 36.000 0.00 0.00 34.92 4.57
1160 1206 7.912250 GCAAAACTGGAATAATGAGTATCTGTG 59.088 37.037 0.00 0.00 34.92 3.66
1161 1207 7.831193 AGCAAAACTGGAATAATGAGTATCTGT 59.169 33.333 0.00 0.00 34.92 3.41
1162 1208 8.218338 AGCAAAACTGGAATAATGAGTATCTG 57.782 34.615 0.00 0.00 34.92 2.90
1163 1209 8.814038 AAGCAAAACTGGAATAATGAGTATCT 57.186 30.769 0.00 0.00 34.92 1.98
1164 1210 8.677300 TGAAGCAAAACTGGAATAATGAGTATC 58.323 33.333 0.00 0.00 0.00 2.24
1165 1211 8.579850 TGAAGCAAAACTGGAATAATGAGTAT 57.420 30.769 0.00 0.00 0.00 2.12
1166 1212 7.994425 TGAAGCAAAACTGGAATAATGAGTA 57.006 32.000 0.00 0.00 0.00 2.59
1167 1213 6.899393 TGAAGCAAAACTGGAATAATGAGT 57.101 33.333 0.00 0.00 0.00 3.41
1168 1214 8.592105 TTTTGAAGCAAAACTGGAATAATGAG 57.408 30.769 1.51 0.00 38.24 2.90
1169 1215 8.991026 CATTTTGAAGCAAAACTGGAATAATGA 58.009 29.630 7.41 0.00 44.40 2.57
1170 1216 8.991026 TCATTTTGAAGCAAAACTGGAATAATG 58.009 29.630 7.41 0.00 44.40 1.90
1171 1217 9.211485 CTCATTTTGAAGCAAAACTGGAATAAT 57.789 29.630 7.41 0.00 44.40 1.28
1172 1218 8.420222 TCTCATTTTGAAGCAAAACTGGAATAA 58.580 29.630 7.41 0.00 44.40 1.40
1173 1219 7.950512 TCTCATTTTGAAGCAAAACTGGAATA 58.049 30.769 7.41 0.00 44.40 1.75
1174 1220 6.819284 TCTCATTTTGAAGCAAAACTGGAAT 58.181 32.000 7.41 0.00 44.40 3.01
1175 1221 6.127366 ACTCTCATTTTGAAGCAAAACTGGAA 60.127 34.615 7.41 1.46 44.40 3.53
1215 1268 1.221414 CGATTCAAATCCTCGGCCTC 58.779 55.000 0.00 0.00 31.68 4.70
1230 1283 5.566469 TGTCTAAGAATTTGTTCCCCGATT 58.434 37.500 0.00 0.00 0.00 3.34
1231 1284 5.174037 TGTCTAAGAATTTGTTCCCCGAT 57.826 39.130 0.00 0.00 0.00 4.18
1241 1294 9.252962 CAAGAAGCAACAATTGTCTAAGAATTT 57.747 29.630 12.39 0.00 0.00 1.82
1243 1296 6.865205 GCAAGAAGCAACAATTGTCTAAGAAT 59.135 34.615 12.39 0.00 44.79 2.40
1443 1499 2.617274 GCAGAAGTTGGTGGCCGTC 61.617 63.158 0.00 0.00 0.00 4.79
1719 1778 1.545428 GGCATCCAGTCTGTGTTGGAA 60.545 52.381 0.00 0.00 45.94 3.53
1909 1968 1.081442 CTAGCGCGCATATGGTCGA 60.081 57.895 35.10 5.24 0.00 4.20
1913 1972 1.669115 AAGGCTAGCGCGCATATGG 60.669 57.895 35.10 16.19 36.88 2.74
1954 2013 2.257371 GGACGTGCACTAGCGACA 59.743 61.111 16.19 0.00 46.23 4.35
2039 2098 9.507329 ACAAATAAGAGATGTATTGACAGTGTT 57.493 29.630 0.00 0.00 39.50 3.32
2063 2122 4.024048 GGTTGATGCGAAGAAAAGAGAACA 60.024 41.667 0.00 0.00 0.00 3.18
2064 2123 4.024048 TGGTTGATGCGAAGAAAAGAGAAC 60.024 41.667 0.00 0.00 0.00 3.01
2078 2137 9.410556 GATACCACATAATAATTTGGTTGATGC 57.589 33.333 2.69 0.00 42.37 3.91
2121 2180 4.979335 TGTGTTTCAAGACCATATCACCA 58.021 39.130 0.00 0.00 0.00 4.17
2123 2182 4.455533 TGCTGTGTTTCAAGACCATATCAC 59.544 41.667 0.00 0.00 0.00 3.06
2128 2187 2.233271 CCTGCTGTGTTTCAAGACCAT 58.767 47.619 0.00 0.00 0.00 3.55
2132 2191 1.165907 CGCCCTGCTGTGTTTCAAGA 61.166 55.000 0.00 0.00 0.00 3.02
2162 2221 2.267426 GGTGGTTGAAAGTTTGTGTGC 58.733 47.619 0.00 0.00 0.00 4.57
2255 2314 9.613957 TCTTCACGCGATTCAAAATTTAATTTA 57.386 25.926 15.93 0.00 0.00 1.40
2256 2315 8.514136 TCTTCACGCGATTCAAAATTTAATTT 57.486 26.923 15.93 0.00 0.00 1.82
2257 2316 8.514136 TTCTTCACGCGATTCAAAATTTAATT 57.486 26.923 15.93 0.00 0.00 1.40
2259 2318 9.781834 ATATTCTTCACGCGATTCAAAATTTAA 57.218 25.926 15.93 0.00 0.00 1.52
2260 2319 9.433317 GATATTCTTCACGCGATTCAAAATTTA 57.567 29.630 15.93 0.00 0.00 1.40
2261 2320 8.184192 AGATATTCTTCACGCGATTCAAAATTT 58.816 29.630 15.93 0.50 0.00 1.82
2263 2322 7.251704 AGATATTCTTCACGCGATTCAAAAT 57.748 32.000 15.93 7.80 0.00 1.82
2264 2323 6.662414 AGATATTCTTCACGCGATTCAAAA 57.338 33.333 15.93 0.00 0.00 2.44
2266 2325 6.270064 TGTAGATATTCTTCACGCGATTCAA 58.730 36.000 15.93 0.00 0.00 2.69
2267 2326 5.827666 TGTAGATATTCTTCACGCGATTCA 58.172 37.500 15.93 0.00 0.00 2.57
2268 2327 6.143496 TCTGTAGATATTCTTCACGCGATTC 58.857 40.000 15.93 0.00 0.00 2.52
2269 2328 6.073327 TCTGTAGATATTCTTCACGCGATT 57.927 37.500 15.93 0.00 0.00 3.34
2270 2329 5.690997 TCTGTAGATATTCTTCACGCGAT 57.309 39.130 15.93 0.00 0.00 4.58
2271 2330 5.238650 TCATCTGTAGATATTCTTCACGCGA 59.761 40.000 15.93 0.00 32.63 5.87
2272 2331 5.452777 TCATCTGTAGATATTCTTCACGCG 58.547 41.667 3.53 3.53 32.63 6.01
2274 2333 8.187480 CCCTATCATCTGTAGATATTCTTCACG 58.813 40.741 0.00 0.00 32.63 4.35
2275 2334 8.474025 CCCCTATCATCTGTAGATATTCTTCAC 58.526 40.741 0.00 0.00 32.63 3.18
2276 2335 8.180165 ACCCCTATCATCTGTAGATATTCTTCA 58.820 37.037 0.00 0.00 32.63 3.02
2281 2356 7.062584 AGGACCCCTATCATCTGTAGATATT 57.937 40.000 0.00 0.00 29.24 1.28
2312 2387 3.000819 AATCTCGTCGCACCCCCA 61.001 61.111 0.00 0.00 0.00 4.96
2314 2389 2.511600 CCAATCTCGTCGCACCCC 60.512 66.667 0.00 0.00 0.00 4.95
2357 2433 2.089980 GAGTCGTAACTGGCTGGACTA 58.910 52.381 0.00 0.00 38.03 2.59
2359 2435 0.456312 CGAGTCGTAACTGGCTGGAC 60.456 60.000 3.82 0.00 35.28 4.02
2371 2447 1.131504 GTCAGCATCTCTTCGAGTCGT 59.868 52.381 13.12 0.00 0.00 4.34
2392 2470 1.965754 GACCTGGATCTGCGCTTCCT 61.966 60.000 20.20 5.65 32.95 3.36
2436 2518 2.203070 GCAGCGTGAATCCCGGAT 60.203 61.111 0.73 0.00 0.00 4.18
2438 2520 2.745884 TTGCAGCGTGAATCCCGG 60.746 61.111 0.00 0.00 0.00 5.73
2441 2523 2.480555 CGGTTGCAGCGTGAATCC 59.519 61.111 0.00 0.00 33.95 3.01
2458 2540 1.502190 GTAGCGGCAAACAAGCTCC 59.498 57.895 1.45 0.00 41.88 4.70
2490 2572 0.608130 CCTCGTTGTGATCTCCACCA 59.392 55.000 0.00 0.00 45.09 4.17
2514 2596 0.168788 CTGCTGCACAATTACACCCG 59.831 55.000 0.00 0.00 0.00 5.28
2517 2599 1.879380 TCCACTGCTGCACAATTACAC 59.121 47.619 0.00 0.00 0.00 2.90
2521 2603 2.289195 CCATTTCCACTGCTGCACAATT 60.289 45.455 0.00 0.00 0.00 2.32
2532 2614 2.046314 CCGCGACCCATTTCCACT 60.046 61.111 8.23 0.00 0.00 4.00
2559 2651 3.630769 AGTCAACACTGAGTTCTACACGA 59.369 43.478 0.00 0.00 38.74 4.35
2561 2653 4.025647 GCAAGTCAACACTGAGTTCTACAC 60.026 45.833 0.00 0.00 42.27 2.90
2623 2715 0.957395 ACGGAACCTCTCGCGAACTA 60.957 55.000 11.33 0.00 0.00 2.24
2640 2732 4.758251 TGCCACCTGATGCCGACG 62.758 66.667 0.00 0.00 0.00 5.12
2643 2735 1.033746 ATTTCTGCCACCTGATGCCG 61.034 55.000 0.00 0.00 0.00 5.69
2670 2762 4.256920 CTCCGTCATCAAAGAATGGAGTT 58.743 43.478 0.00 0.00 37.53 3.01
2685 2777 1.741401 CCTGAATTGCGCTCCGTCA 60.741 57.895 9.73 6.22 0.00 4.35
2690 2782 2.223433 CCTCATTTCCTGAATTGCGCTC 60.223 50.000 9.73 0.00 32.14 5.03
2693 2785 3.012518 AGACCTCATTTCCTGAATTGCG 58.987 45.455 0.00 0.00 32.14 4.85
2706 2800 0.033601 AGGACGAGCAGAGACCTCAT 60.034 55.000 0.00 0.00 0.00 2.90
2725 2819 1.340889 GCTTGATTTGTGAAGGTGGCA 59.659 47.619 0.00 0.00 0.00 4.92
2743 2837 3.461773 CGACCCCACTGATCGGCT 61.462 66.667 0.00 0.00 32.22 5.52
2746 2840 2.184322 CCACGACCCCACTGATCG 59.816 66.667 0.00 0.00 41.60 3.69
2750 2844 3.566210 AACCCCACGACCCCACTG 61.566 66.667 0.00 0.00 0.00 3.66
2779 2873 0.911769 ATCACCCGAATCCTCAAGCA 59.088 50.000 0.00 0.00 0.00 3.91
2785 2885 0.839946 CTTCCCATCACCCGAATCCT 59.160 55.000 0.00 0.00 0.00 3.24
2787 2887 0.819666 GGCTTCCCATCACCCGAATC 60.820 60.000 0.00 0.00 0.00 2.52
2797 2897 1.604378 CAGTTCCTCGGCTTCCCAT 59.396 57.895 0.00 0.00 0.00 4.00
2850 2963 1.822613 TGGTTGTGCCGCGGTAAAA 60.823 52.632 28.70 22.12 41.21 1.52
2851 2964 2.203167 TGGTTGTGCCGCGGTAAA 60.203 55.556 28.70 16.21 41.21 2.01
2852 2965 2.973600 GTGGTTGTGCCGCGGTAA 60.974 61.111 28.70 16.77 41.21 2.85
2869 2982 0.606401 AGAATCTGCCACCACAACGG 60.606 55.000 0.00 0.00 42.50 4.44
2871 2984 1.896220 TCAGAATCTGCCACCACAAC 58.104 50.000 5.18 0.00 0.00 3.32
2881 2994 6.879276 AGCATATTTGACCATCAGAATCTG 57.121 37.500 3.38 3.38 0.00 2.90
2882 2995 8.380867 TCATAGCATATTTGACCATCAGAATCT 58.619 33.333 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.