Multiple sequence alignment - TraesCS3B01G170100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G170100 chr3B 100.000 2778 0 0 1 2778 169920620 169923397 0.000000e+00 5131.0
1 TraesCS3B01G170100 chr3B 94.497 636 32 3 1 635 146287455 146288088 0.000000e+00 977.0
2 TraesCS3B01G170100 chr3B 94.488 635 31 4 1 635 157560717 157561347 0.000000e+00 976.0
3 TraesCS3B01G170100 chr3D 94.059 1414 58 8 963 2355 116334230 116335638 0.000000e+00 2122.0
4 TraesCS3B01G170100 chr2B 94.720 644 29 4 1 641 102136065 102135424 0.000000e+00 996.0
5 TraesCS3B01G170100 chr2B 94.662 637 29 5 1 635 518372572 518373205 0.000000e+00 983.0
6 TraesCS3B01G170100 chr2B 94.497 636 33 2 1 635 782129519 782128885 0.000000e+00 979.0
7 TraesCS3B01G170100 chr2B 83.019 106 11 1 1379 1484 744189533 744189435 3.810000e-14 89.8
8 TraesCS3B01G170100 chr5B 94.969 636 28 4 1 635 139684501 139685133 0.000000e+00 994.0
9 TraesCS3B01G170100 chr1B 94.969 636 27 3 1 635 82300720 82301351 0.000000e+00 992.0
10 TraesCS3B01G170100 chr1B 91.882 271 18 3 953 1222 435369066 435368799 2.610000e-100 375.0
11 TraesCS3B01G170100 chr1B 91.935 62 5 0 1380 1441 435813042 435813103 1.370000e-13 87.9
12 TraesCS3B01G170100 chr6B 94.662 637 29 5 1 635 30621998 30622631 0.000000e+00 983.0
13 TraesCS3B01G170100 chr4B 94.505 637 29 6 1 635 122469041 122469673 0.000000e+00 977.0
14 TraesCS3B01G170100 chr1D 87.452 518 37 10 1964 2467 454850886 454850383 3.100000e-159 571.0
15 TraesCS3B01G170100 chr1D 85.253 434 52 9 639 1067 322928283 322927857 1.180000e-118 436.0
16 TraesCS3B01G170100 chr1D 88.365 318 28 6 635 951 323499702 323499393 9.400000e-100 374.0
17 TraesCS3B01G170100 chr1D 87.421 318 32 5 635 951 323116920 323116610 2.630000e-95 359.0
18 TraesCS3B01G170100 chr1D 91.011 267 20 3 958 1222 323499357 323499093 9.460000e-95 357.0
19 TraesCS3B01G170100 chr1D 87.500 312 30 6 639 949 322784198 322783895 4.400000e-93 351.0
20 TraesCS3B01G170100 chr1D 91.154 260 20 2 955 1213 323116577 323116320 1.580000e-92 350.0
21 TraesCS3B01G170100 chr1D 90.000 270 23 3 955 1222 322783860 322783593 2.050000e-91 346.0
22 TraesCS3B01G170100 chr1D 86.943 314 32 6 639 951 322759462 322759157 7.370000e-91 344.0
23 TraesCS3B01G170100 chr1D 89.416 274 25 3 955 1226 322996602 322996331 2.650000e-90 342.0
24 TraesCS3B01G170100 chr1D 89.773 264 24 3 955 1217 322759124 322758863 4.430000e-88 335.0
25 TraesCS3B01G170100 chr1D 85.714 315 34 8 639 951 322910306 322910001 3.450000e-84 322.0
26 TraesCS3B01G170100 chr7D 87.016 516 38 10 1964 2465 110253588 110253088 3.130000e-154 555.0
27 TraesCS3B01G170100 chr1A 91.852 270 18 3 955 1222 32801357 32801090 9.400000e-100 374.0
28 TraesCS3B01G170100 chr1A 88.710 310 26 6 635 943 398893258 398892957 1.220000e-98 370.0
29 TraesCS3B01G170100 chr1A 89.259 270 22 6 955 1222 398892916 398892652 5.730000e-87 331.0
30 TraesCS3B01G170100 chr1A 84.906 318 32 12 635 945 424080265 424080573 9.660000e-80 307.0
31 TraesCS3B01G170100 chr1A 83.540 322 38 10 635 949 423594571 423594258 1.260000e-73 287.0
32 TraesCS3B01G170100 chr1A 90.476 63 4 2 1380 1441 424081184 424081245 6.380000e-12 82.4
33 TraesCS3B01G170100 chr1A 81.731 104 12 4 1380 1483 424273542 424273638 2.290000e-11 80.5
34 TraesCS3B01G170100 chr2D 88.660 291 28 5 2218 2508 39424464 39424179 1.580000e-92 350.0
35 TraesCS3B01G170100 chr2D 89.179 268 19 3 1963 2220 39425079 39424812 2.670000e-85 326.0
36 TraesCS3B01G170100 chr2D 80.272 294 32 13 2066 2340 567650037 567650323 6.070000e-47 198.0
37 TraesCS3B01G170100 chr7B 85.068 221 25 6 2102 2315 710502614 710502833 4.660000e-53 219.0
38 TraesCS3B01G170100 chr5D 76.369 347 47 22 2066 2389 478460838 478460504 1.330000e-33 154.0
39 TraesCS3B01G170100 chr7A 92.982 57 1 3 2521 2576 10877999 10877945 2.290000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G170100 chr3B 169920620 169923397 2777 False 5131.0 5131 100.0000 1 2778 1 chr3B.!!$F3 2777
1 TraesCS3B01G170100 chr3B 146287455 146288088 633 False 977.0 977 94.4970 1 635 1 chr3B.!!$F1 634
2 TraesCS3B01G170100 chr3B 157560717 157561347 630 False 976.0 976 94.4880 1 635 1 chr3B.!!$F2 634
3 TraesCS3B01G170100 chr3D 116334230 116335638 1408 False 2122.0 2122 94.0590 963 2355 1 chr3D.!!$F1 1392
4 TraesCS3B01G170100 chr2B 102135424 102136065 641 True 996.0 996 94.7200 1 641 1 chr2B.!!$R1 640
5 TraesCS3B01G170100 chr2B 518372572 518373205 633 False 983.0 983 94.6620 1 635 1 chr2B.!!$F1 634
6 TraesCS3B01G170100 chr2B 782128885 782129519 634 True 979.0 979 94.4970 1 635 1 chr2B.!!$R3 634
7 TraesCS3B01G170100 chr5B 139684501 139685133 632 False 994.0 994 94.9690 1 635 1 chr5B.!!$F1 634
8 TraesCS3B01G170100 chr1B 82300720 82301351 631 False 992.0 992 94.9690 1 635 1 chr1B.!!$F1 634
9 TraesCS3B01G170100 chr6B 30621998 30622631 633 False 983.0 983 94.6620 1 635 1 chr6B.!!$F1 634
10 TraesCS3B01G170100 chr4B 122469041 122469673 632 False 977.0 977 94.5050 1 635 1 chr4B.!!$F1 634
11 TraesCS3B01G170100 chr1D 454850383 454850886 503 True 571.0 571 87.4520 1964 2467 1 chr1D.!!$R4 503
12 TraesCS3B01G170100 chr1D 323499093 323499702 609 True 365.5 374 89.6880 635 1222 2 chr1D.!!$R8 587
13 TraesCS3B01G170100 chr1D 323116320 323116920 600 True 354.5 359 89.2875 635 1213 2 chr1D.!!$R7 578
14 TraesCS3B01G170100 chr1D 322783593 322784198 605 True 348.5 351 88.7500 639 1222 2 chr1D.!!$R6 583
15 TraesCS3B01G170100 chr1D 322758863 322759462 599 True 339.5 344 88.3580 639 1217 2 chr1D.!!$R5 578
16 TraesCS3B01G170100 chr7D 110253088 110253588 500 True 555.0 555 87.0160 1964 2465 1 chr7D.!!$R1 501
17 TraesCS3B01G170100 chr1A 398892652 398893258 606 True 350.5 370 88.9845 635 1222 2 chr1A.!!$R3 587
18 TraesCS3B01G170100 chr2D 39424179 39425079 900 True 338.0 350 88.9195 1963 2508 2 chr2D.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 611 1.807742 TCAGCGAAAATAAACCGTGGG 59.192 47.619 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2008 0.036732 TTGATTCAGCGCACTCCCTT 59.963 50.0 11.47 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 80 2.093447 GCTAATATCGATGGAGGGGTGG 60.093 54.545 8.54 0.00 0.00 4.61
311 321 8.626526 ACGTGTCTGTTATTTGTTTCCTAAAAT 58.373 29.630 0.00 0.00 0.00 1.82
600 611 1.807742 TCAGCGAAAATAAACCGTGGG 59.192 47.619 0.00 0.00 0.00 4.61
706 717 6.446318 TGGAGCGAATAAATGCCATAATTTC 58.554 36.000 0.00 0.00 32.16 2.17
707 718 6.265196 TGGAGCGAATAAATGCCATAATTTCT 59.735 34.615 0.00 0.00 32.16 2.52
708 719 7.147976 GGAGCGAATAAATGCCATAATTTCTT 58.852 34.615 0.00 0.00 32.16 2.52
709 720 8.296713 GGAGCGAATAAATGCCATAATTTCTTA 58.703 33.333 0.00 0.00 32.16 2.10
710 721 9.846248 GAGCGAATAAATGCCATAATTTCTTAT 57.154 29.630 0.00 0.00 32.16 1.73
912 924 7.036220 GTCAATCCATACCTACAGGATATTCG 58.964 42.308 1.29 0.00 41.15 3.34
922 934 3.320626 ACAGGATATTCGATGATGTGCG 58.679 45.455 0.00 0.00 0.00 5.34
925 938 3.990469 AGGATATTCGATGATGTGCGTTC 59.010 43.478 0.00 0.00 0.00 3.95
927 940 4.376413 GGATATTCGATGATGTGCGTTCAC 60.376 45.833 0.00 0.00 43.40 3.18
932 945 2.349580 CGATGATGTGCGTTCACTTGAT 59.650 45.455 0.00 0.00 43.49 2.57
945 958 7.126398 GCGTTCACTTGATGATCCTAATTAAC 58.874 38.462 0.00 0.00 37.11 2.01
951 964 7.385205 CACTTGATGATCCTAATTAACTACGGG 59.615 40.741 0.00 0.00 0.00 5.28
953 966 5.247564 TGATGATCCTAATTAACTACGGGGG 59.752 44.000 0.00 0.00 0.00 5.40
1074 1117 5.592688 CACAACCAAAAGGACTTAGGAGAAA 59.407 40.000 9.58 0.00 0.00 2.52
1139 1183 3.696051 ACACAAGTGTTCTGTGCTTGATT 59.304 39.130 10.01 0.00 41.83 2.57
1281 1326 7.450634 GGTGTTCCCTTTAGTTATCTTTTTCCT 59.549 37.037 0.00 0.00 0.00 3.36
1359 1411 5.530712 CCTCGTAGTCCTTTAAATCTAGCC 58.469 45.833 0.00 0.00 0.00 3.93
1363 1415 7.710896 TCGTAGTCCTTTAAATCTAGCCTAAC 58.289 38.462 0.00 0.00 0.00 2.34
1407 1459 7.995289 TCTAGTGTTATTTAACAATGGCATGG 58.005 34.615 12.29 0.00 46.54 3.66
1436 1488 3.568430 AGAGGTGTTTTCCCGTTGATTTC 59.432 43.478 0.00 0.00 0.00 2.17
1469 1521 3.504520 ACCACAATAACAATTGGGTCGTC 59.495 43.478 10.83 0.00 33.08 4.20
1479 1531 2.875087 TTGGGTCGTCGTATGTATGG 57.125 50.000 0.00 0.00 0.00 2.74
1498 1550 3.215975 TGGTTTTGGTAGTACTGGCAAC 58.784 45.455 5.39 0.00 0.00 4.17
1519 1571 7.598869 GGCAACGACATGAAATATATCAGTAGA 59.401 37.037 0.00 0.00 31.76 2.59
1677 1729 2.797491 TCGATGCTAAGTCGTGTGATG 58.203 47.619 0.00 0.00 39.91 3.07
1678 1730 2.163613 TCGATGCTAAGTCGTGTGATGT 59.836 45.455 0.00 0.00 39.91 3.06
1681 1733 3.660501 TGCTAAGTCGTGTGATGTCTT 57.339 42.857 0.00 0.00 0.00 3.01
1730 1782 1.031571 CCTGCCGTAATGGTGCATGT 61.032 55.000 0.00 0.00 41.21 3.21
1797 1856 8.469200 TGTGGAAATAAAGATTGAGCATTAAGG 58.531 33.333 0.00 0.00 0.00 2.69
1807 1866 8.992835 AGATTGAGCATTAAGGATTGTTTTTC 57.007 30.769 0.00 0.00 0.00 2.29
1905 1964 2.101582 ACCGCTCAGGCTATTAAGAGTG 59.898 50.000 0.00 5.60 46.52 3.51
1919 1978 5.759506 TTAAGAGTGGATCAGATCGAGAC 57.240 43.478 4.23 1.65 0.00 3.36
1947 2006 2.097466 CGAGAGAAAGAGAGACAGAGGC 59.903 54.545 0.00 0.00 0.00 4.70
1948 2007 2.427095 GAGAGAAAGAGAGACAGAGGCC 59.573 54.545 0.00 0.00 0.00 5.19
1949 2008 2.175202 GAGAAAGAGAGACAGAGGCCA 58.825 52.381 5.01 0.00 0.00 5.36
1980 2039 0.251742 TGAATCAAACCCAGCCCCTG 60.252 55.000 0.00 0.00 0.00 4.45
2044 2104 3.803082 CATCGTTGGCAGGCACGG 61.803 66.667 10.01 3.69 37.02 4.94
2135 2201 1.513102 CGACGCATCACAAAATCACG 58.487 50.000 0.00 0.00 0.00 4.35
2138 2204 1.464608 ACGCATCACAAAATCACGGAG 59.535 47.619 0.00 0.00 0.00 4.63
2279 2703 2.358003 GAAGCAGCCTGTGTCGCT 60.358 61.111 0.00 0.00 36.91 4.93
2341 2765 2.812499 GCGAAGGCCATAGGACGA 59.188 61.111 5.01 0.00 34.63 4.20
2423 2847 0.741221 ACTTCGAGAAGGCCAATCGC 60.741 55.000 16.71 10.11 42.53 4.58
2437 2861 2.223433 CCAATCGCTCAATCTTGCCTTC 60.223 50.000 0.00 0.00 0.00 3.46
2439 2863 0.615331 TCGCTCAATCTTGCCTTCCT 59.385 50.000 0.00 0.00 0.00 3.36
2447 2871 6.015010 GCTCAATCTTGCCTTCCTACTATCTA 60.015 42.308 0.00 0.00 0.00 1.98
2448 2872 7.531857 TCAATCTTGCCTTCCTACTATCTAG 57.468 40.000 0.00 0.00 0.00 2.43
2458 2882 3.426615 CCTACTATCTAGTGGGCCTCTG 58.573 54.545 18.09 8.28 45.89 3.35
2515 2939 9.787435 TTGTTCATGTAAAAGATAGTACCTTGT 57.213 29.630 0.00 0.00 0.00 3.16
2516 2940 9.787435 TGTTCATGTAAAAGATAGTACCTTGTT 57.213 29.630 0.00 0.00 0.00 2.83
2526 2950 9.544579 AAAGATAGTACCTTGTTAGTTAGACCT 57.455 33.333 0.00 0.00 0.00 3.85
2527 2951 8.522542 AGATAGTACCTTGTTAGTTAGACCTG 57.477 38.462 0.00 0.00 0.00 4.00
2528 2952 5.997384 AGTACCTTGTTAGTTAGACCTGG 57.003 43.478 0.00 0.00 0.00 4.45
2529 2953 3.697619 ACCTTGTTAGTTAGACCTGGC 57.302 47.619 0.00 0.00 0.00 4.85
2530 2954 2.305052 ACCTTGTTAGTTAGACCTGGCC 59.695 50.000 0.00 0.00 0.00 5.36
2531 2955 2.304761 CCTTGTTAGTTAGACCTGGCCA 59.695 50.000 4.71 4.71 0.00 5.36
2532 2956 3.054361 CCTTGTTAGTTAGACCTGGCCAT 60.054 47.826 5.51 0.00 0.00 4.40
2533 2957 3.627395 TGTTAGTTAGACCTGGCCATG 57.373 47.619 5.51 6.06 0.00 3.66
2534 2958 2.238646 TGTTAGTTAGACCTGGCCATGG 59.761 50.000 5.51 13.05 0.00 3.66
2535 2959 1.507140 TAGTTAGACCTGGCCATGGG 58.493 55.000 20.97 16.10 0.00 4.00
2563 2987 4.570663 CGATCGGCCCGACCTGAC 62.571 72.222 8.62 0.00 39.18 3.51
2564 2988 4.222847 GATCGGCCCGACCTGACC 62.223 72.222 8.62 0.00 39.18 4.02
2573 2997 3.379445 GACCTGACCCGGCTCGAA 61.379 66.667 0.00 0.00 0.00 3.71
2574 2998 2.920912 ACCTGACCCGGCTCGAAA 60.921 61.111 0.00 0.00 0.00 3.46
2575 2999 2.345991 CCTGACCCGGCTCGAAAA 59.654 61.111 0.00 0.00 0.00 2.29
2576 3000 1.302192 CCTGACCCGGCTCGAAAAA 60.302 57.895 0.00 0.00 0.00 1.94
2577 3001 1.298859 CCTGACCCGGCTCGAAAAAG 61.299 60.000 0.00 0.00 0.00 2.27
2578 3002 1.912371 CTGACCCGGCTCGAAAAAGC 61.912 60.000 0.00 0.00 41.73 3.51
2579 3003 1.964373 GACCCGGCTCGAAAAAGCA 60.964 57.895 0.00 0.00 44.35 3.91
2580 3004 1.512156 GACCCGGCTCGAAAAAGCAA 61.512 55.000 0.00 0.00 44.35 3.91
2581 3005 1.210155 CCCGGCTCGAAAAAGCAAG 59.790 57.895 0.00 0.00 44.35 4.01
2582 3006 1.234615 CCCGGCTCGAAAAAGCAAGA 61.235 55.000 0.00 0.00 44.35 3.02
2583 3007 0.110192 CCGGCTCGAAAAAGCAAGAC 60.110 55.000 0.00 0.00 44.35 3.01
2584 3008 0.110192 CGGCTCGAAAAAGCAAGACC 60.110 55.000 0.00 0.00 44.35 3.85
2585 3009 0.241213 GGCTCGAAAAAGCAAGACCC 59.759 55.000 0.00 0.00 44.35 4.46
2586 3010 0.951558 GCTCGAAAAAGCAAGACCCA 59.048 50.000 0.00 0.00 42.05 4.51
2587 3011 1.336755 GCTCGAAAAAGCAAGACCCAA 59.663 47.619 0.00 0.00 42.05 4.12
2588 3012 2.858646 GCTCGAAAAAGCAAGACCCAAC 60.859 50.000 0.00 0.00 42.05 3.77
2589 3013 1.679153 TCGAAAAAGCAAGACCCAACC 59.321 47.619 0.00 0.00 0.00 3.77
2590 3014 1.681264 CGAAAAAGCAAGACCCAACCT 59.319 47.619 0.00 0.00 0.00 3.50
2591 3015 2.100749 CGAAAAAGCAAGACCCAACCTT 59.899 45.455 0.00 0.00 0.00 3.50
2592 3016 3.457234 GAAAAAGCAAGACCCAACCTTG 58.543 45.455 0.00 0.00 42.77 3.61
2593 3017 2.159179 AAAGCAAGACCCAACCTTGT 57.841 45.000 0.00 0.00 42.11 3.16
2594 3018 1.692411 AAGCAAGACCCAACCTTGTC 58.308 50.000 0.00 0.00 42.11 3.18
2595 3019 0.178990 AGCAAGACCCAACCTTGTCC 60.179 55.000 0.00 0.00 42.11 4.02
2596 3020 0.467290 GCAAGACCCAACCTTGTCCA 60.467 55.000 0.00 0.00 42.11 4.02
2597 3021 1.318576 CAAGACCCAACCTTGTCCAC 58.681 55.000 0.00 0.00 36.99 4.02
2598 3022 0.185175 AAGACCCAACCTTGTCCACC 59.815 55.000 0.00 0.00 31.76 4.61
2599 3023 1.599797 GACCCAACCTTGTCCACCG 60.600 63.158 0.00 0.00 0.00 4.94
2600 3024 2.282180 CCCAACCTTGTCCACCGG 60.282 66.667 0.00 0.00 0.00 5.28
2601 3025 2.983592 CCAACCTTGTCCACCGGC 60.984 66.667 0.00 0.00 0.00 6.13
2602 3026 2.113139 CAACCTTGTCCACCGGCT 59.887 61.111 0.00 0.00 0.00 5.52
2603 3027 2.113139 AACCTTGTCCACCGGCTG 59.887 61.111 0.00 0.00 0.00 4.85
2604 3028 3.491598 AACCTTGTCCACCGGCTGG 62.492 63.158 11.02 11.02 42.29 4.85
2605 3029 4.722700 CCTTGTCCACCGGCTGGG 62.723 72.222 18.00 11.36 41.06 4.45
2616 3040 4.632974 GGCTGGGCTCGGGCATAG 62.633 72.222 15.37 7.75 43.53 2.23
2617 3041 4.632974 GCTGGGCTCGGGCATAGG 62.633 72.222 10.74 0.00 40.87 2.57
2618 3042 3.164269 CTGGGCTCGGGCATAGGT 61.164 66.667 10.74 0.00 40.87 3.08
2619 3043 2.690881 TGGGCTCGGGCATAGGTT 60.691 61.111 10.74 0.00 40.87 3.50
2620 3044 2.270874 CTGGGCTCGGGCATAGGTTT 62.271 60.000 10.74 0.00 40.87 3.27
2621 3045 1.526225 GGGCTCGGGCATAGGTTTC 60.526 63.158 10.74 0.00 40.87 2.78
2622 3046 1.223487 GGCTCGGGCATAGGTTTCA 59.777 57.895 10.74 0.00 40.87 2.69
2623 3047 0.393808 GGCTCGGGCATAGGTTTCAA 60.394 55.000 10.74 0.00 40.87 2.69
2624 3048 1.017387 GCTCGGGCATAGGTTTCAAG 58.983 55.000 0.00 0.00 38.54 3.02
2625 3049 1.017387 CTCGGGCATAGGTTTCAAGC 58.983 55.000 0.00 0.00 0.00 4.01
2626 3050 0.393808 TCGGGCATAGGTTTCAAGCC 60.394 55.000 0.00 0.00 44.48 4.35
2628 3052 2.106844 GGCATAGGTTTCAAGCCCG 58.893 57.895 0.00 0.00 39.42 6.13
2629 3053 0.393808 GGCATAGGTTTCAAGCCCGA 60.394 55.000 0.00 0.00 39.42 5.14
2630 3054 0.733150 GCATAGGTTTCAAGCCCGAC 59.267 55.000 0.00 0.00 0.00 4.79
2631 3055 1.006832 CATAGGTTTCAAGCCCGACG 58.993 55.000 0.00 0.00 0.00 5.12
2632 3056 0.743345 ATAGGTTTCAAGCCCGACGC 60.743 55.000 0.00 0.00 37.98 5.19
2633 3057 2.791501 TAGGTTTCAAGCCCGACGCC 62.792 60.000 0.00 0.00 38.78 5.68
2634 3058 3.733960 GTTTCAAGCCCGACGCCC 61.734 66.667 0.00 0.00 38.78 6.13
2658 3082 3.557290 GGTCCGGACCCATAGGCC 61.557 72.222 39.24 15.09 45.68 5.19
2659 3083 2.446036 GTCCGGACCCATAGGCCT 60.446 66.667 24.75 11.78 36.11 5.19
2660 3084 2.445845 TCCGGACCCATAGGCCTG 60.446 66.667 17.99 0.00 36.11 4.85
2661 3085 3.560251 CCGGACCCATAGGCCTGG 61.560 72.222 17.99 11.32 36.11 4.45
2662 3086 4.256180 CGGACCCATAGGCCTGGC 62.256 72.222 17.99 11.05 36.11 4.85
2663 3087 4.256180 GGACCCATAGGCCTGGCG 62.256 72.222 17.99 6.74 36.11 5.69
2664 3088 4.256180 GACCCATAGGCCTGGCGG 62.256 72.222 17.99 13.89 36.11 6.13
2674 3098 2.361104 CCTGGCGGGCTTTTAGCA 60.361 61.111 0.00 0.00 44.75 3.49
2675 3099 1.754234 CCTGGCGGGCTTTTAGCAT 60.754 57.895 0.00 0.00 44.75 3.79
2676 3100 1.434696 CTGGCGGGCTTTTAGCATG 59.565 57.895 2.38 0.00 44.75 4.06
2677 3101 1.001517 TGGCGGGCTTTTAGCATGA 60.002 52.632 0.00 0.00 44.75 3.07
2678 3102 0.395586 TGGCGGGCTTTTAGCATGAT 60.396 50.000 0.00 0.00 44.75 2.45
2679 3103 0.031178 GGCGGGCTTTTAGCATGATG 59.969 55.000 0.00 0.00 44.75 3.07
2680 3104 0.031178 GCGGGCTTTTAGCATGATGG 59.969 55.000 0.00 0.00 44.75 3.51
2681 3105 0.670162 CGGGCTTTTAGCATGATGGG 59.330 55.000 0.00 0.00 44.75 4.00
2682 3106 0.390492 GGGCTTTTAGCATGATGGGC 59.610 55.000 0.00 0.00 44.75 5.36
2683 3107 0.390492 GGCTTTTAGCATGATGGGCC 59.610 55.000 0.00 0.00 44.75 5.80
2684 3108 0.031178 GCTTTTAGCATGATGGGCCG 59.969 55.000 0.00 0.00 41.89 6.13
2685 3109 0.670162 CTTTTAGCATGATGGGCCGG 59.330 55.000 0.00 0.00 0.00 6.13
2686 3110 0.754957 TTTTAGCATGATGGGCCGGG 60.755 55.000 2.18 0.00 0.00 5.73
2687 3111 3.790416 TTAGCATGATGGGCCGGGC 62.790 63.158 22.00 22.00 0.00 6.13
2732 3156 2.600470 GCTCGGGCCTGGGTTTTT 60.600 61.111 14.54 0.00 0.00 1.94
2747 3171 2.435418 TTTTTGCATCGGGCTTGGT 58.565 47.368 0.00 0.00 45.15 3.67
2748 3172 1.621992 TTTTTGCATCGGGCTTGGTA 58.378 45.000 0.00 0.00 45.15 3.25
2749 3173 1.173043 TTTTGCATCGGGCTTGGTAG 58.827 50.000 0.00 0.00 45.15 3.18
2750 3174 0.679640 TTTGCATCGGGCTTGGTAGG 60.680 55.000 0.00 0.00 45.15 3.18
2751 3175 2.902343 GCATCGGGCTTGGTAGGC 60.902 66.667 0.00 0.00 45.78 3.93
2766 3190 4.256180 GGCCCGGCCCTACAGATG 62.256 72.222 18.83 0.00 44.06 2.90
2767 3191 4.256180 GCCCGGCCCTACAGATGG 62.256 72.222 0.00 0.00 0.00 3.51
2772 3196 3.324713 GCCCTACAGATGGCCAGT 58.675 61.111 13.05 6.45 41.97 4.00
2773 3197 1.609783 GCCCTACAGATGGCCAGTT 59.390 57.895 13.05 0.00 41.97 3.16
2774 3198 0.837272 GCCCTACAGATGGCCAGTTA 59.163 55.000 13.05 0.00 41.97 2.24
2775 3199 1.421646 GCCCTACAGATGGCCAGTTAT 59.578 52.381 13.05 0.00 41.97 1.89
2776 3200 2.637872 GCCCTACAGATGGCCAGTTATA 59.362 50.000 13.05 0.12 41.97 0.98
2777 3201 3.072476 GCCCTACAGATGGCCAGTTATAA 59.928 47.826 13.05 0.00 41.97 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.437742 GTTATGATTGTTTGCAATTCTTTCCAG 58.562 33.333 0.00 0.00 44.61 3.86
15 16 2.752354 CTCCGGGTTATGATTGTTTGCA 59.248 45.455 0.00 0.00 0.00 4.08
21 23 4.607293 TGAGATCTCCGGGTTATGATTG 57.393 45.455 20.03 0.00 0.00 2.67
266 274 3.067601 ACGTCACAAAAATTTCCTCCCAC 59.932 43.478 0.00 0.00 0.00 4.61
277 287 6.613233 ACAAATAACAGACACGTCACAAAAA 58.387 32.000 0.00 0.00 0.00 1.94
278 288 6.184580 ACAAATAACAGACACGTCACAAAA 57.815 33.333 0.00 0.00 0.00 2.44
407 418 8.925700 CCTTTTATTGGTTCAATTTGTCTTAGC 58.074 33.333 0.00 0.00 35.54 3.09
469 480 7.814107 ACTTTCCTAACGTATAACAAATCACGA 59.186 33.333 0.00 0.00 37.80 4.35
551 562 1.079438 GTCTCTCCTCCCACCACCT 59.921 63.158 0.00 0.00 0.00 4.00
580 591 1.807742 CCCACGGTTTATTTTCGCTGA 59.192 47.619 0.00 0.00 0.00 4.26
600 611 2.027192 TGGAGCAGTTGGTGAATAGTCC 60.027 50.000 0.00 0.00 0.00 3.85
867 879 9.553064 GATTGACTGACTACAAGAATATCCATT 57.447 33.333 0.00 0.00 0.00 3.16
868 880 8.153550 GGATTGACTGACTACAAGAATATCCAT 58.846 37.037 0.00 0.00 0.00 3.41
877 889 6.227298 AGGTATGGATTGACTGACTACAAG 57.773 41.667 0.00 0.00 0.00 3.16
886 898 7.093727 CGAATATCCTGTAGGTATGGATTGACT 60.094 40.741 0.00 0.00 40.62 3.41
925 938 7.385205 CCCGTAGTTAATTAGGATCATCAAGTG 59.615 40.741 0.00 0.00 0.00 3.16
927 940 6.874134 CCCCGTAGTTAATTAGGATCATCAAG 59.126 42.308 0.00 0.00 0.00 3.02
932 945 4.818447 TCCCCCGTAGTTAATTAGGATCA 58.182 43.478 0.00 0.00 0.00 2.92
945 958 4.022329 GCCATTTTATTCATTCCCCCGTAG 60.022 45.833 0.00 0.00 0.00 3.51
951 964 8.738106 TCAATTTTTGCCATTTTATTCATTCCC 58.262 29.630 0.00 0.00 0.00 3.97
1079 1123 6.403878 AGCCATAACGTAATTGTCTACTGTT 58.596 36.000 0.00 0.00 0.00 3.16
1080 1124 5.974108 AGCCATAACGTAATTGTCTACTGT 58.026 37.500 0.00 0.00 0.00 3.55
1281 1326 3.315191 GCTGCTCAAGTTGGTACTTTCAA 59.685 43.478 2.34 0.00 41.85 2.69
1407 1459 2.548480 CGGGAAAACACCTCTTGTCTTC 59.452 50.000 0.00 0.00 37.51 2.87
1469 1521 6.477688 CCAGTACTACCAAAACCATACATACG 59.522 42.308 0.00 0.00 0.00 3.06
1479 1531 3.059393 GTCGTTGCCAGTACTACCAAAAC 60.059 47.826 8.46 7.10 0.00 2.43
1519 1571 1.401761 TGCAAACACAGGCAGAACAT 58.598 45.000 0.00 0.00 34.58 2.71
1598 1650 1.139095 GTCGTCTTCCAGGCCTACG 59.861 63.158 17.15 17.15 34.99 3.51
1677 1729 5.860716 CCTTTTTATCTTGCTTGCAGAAGAC 59.139 40.000 6.96 0.00 31.09 3.01
1678 1730 5.047802 CCCTTTTTATCTTGCTTGCAGAAGA 60.048 40.000 7.20 7.20 32.83 2.87
1681 1733 4.406456 TCCCTTTTTATCTTGCTTGCAGA 58.594 39.130 0.00 0.00 0.00 4.26
1768 1820 8.579850 AATGCTCAATCTTTATTTCCACACTA 57.420 30.769 0.00 0.00 0.00 2.74
1885 1944 2.546795 CCACTCTTAATAGCCTGAGCGG 60.547 54.545 0.00 0.00 46.67 5.52
1905 1964 3.364864 CGACATCAGTCTCGATCTGATCC 60.365 52.174 22.08 17.27 46.67 3.36
1919 1978 4.394610 TGTCTCTCTTTCTCTCGACATCAG 59.605 45.833 0.00 0.00 0.00 2.90
1947 2006 1.372087 GATTCAGCGCACTCCCTTGG 61.372 60.000 11.47 0.00 0.00 3.61
1948 2007 0.674581 TGATTCAGCGCACTCCCTTG 60.675 55.000 11.47 0.00 0.00 3.61
1949 2008 0.036732 TTGATTCAGCGCACTCCCTT 59.963 50.000 11.47 0.00 0.00 3.95
1983 2042 2.589610 ATCTAGCGGCAGAGGGGACA 62.590 60.000 1.45 0.00 0.00 4.02
2044 2104 0.250553 TCAAACATCGGTGGTGGTCC 60.251 55.000 0.00 0.00 0.00 4.46
2054 2114 3.155998 GTCAACGCTTCATCAAACATCG 58.844 45.455 0.00 0.00 0.00 3.84
2279 2703 7.069344 TCCCTTCTGTAGATCTGATTCATACA 58.931 38.462 5.18 0.00 0.00 2.29
2341 2765 4.427661 GCGTCGCTGCTGACCTCT 62.428 66.667 10.68 0.00 35.40 3.69
2348 2772 2.032860 ATTAGGGATGCGTCGCTGCT 62.033 55.000 29.99 16.79 46.01 4.24
2398 2822 1.270839 TGGCCTTCTCGAAGTTTCCTG 60.271 52.381 3.32 0.00 36.72 3.86
2403 2827 1.726853 CGATTGGCCTTCTCGAAGTT 58.273 50.000 14.45 0.00 36.72 2.66
2408 2832 0.740868 TTGAGCGATTGGCCTTCTCG 60.741 55.000 3.32 11.00 45.17 4.04
2423 2847 6.418057 AGATAGTAGGAAGGCAAGATTGAG 57.582 41.667 0.00 0.00 0.00 3.02
2437 2861 3.426615 CAGAGGCCCACTAGATAGTAGG 58.573 54.545 0.00 0.59 38.01 3.18
2439 2863 2.814469 CGCAGAGGCCCACTAGATAGTA 60.814 54.545 0.00 0.00 33.66 1.82
2489 2913 9.787435 ACAAGGTACTATCTTTTACATGAACAA 57.213 29.630 0.00 0.00 38.49 2.83
2490 2914 9.787435 AACAAGGTACTATCTTTTACATGAACA 57.213 29.630 0.00 0.00 38.49 3.18
2502 2926 7.560626 CCAGGTCTAACTAACAAGGTACTATCT 59.439 40.741 0.00 0.00 38.49 1.98
2503 2927 7.683945 GCCAGGTCTAACTAACAAGGTACTATC 60.684 44.444 0.00 0.00 38.49 2.08
2504 2928 6.097981 GCCAGGTCTAACTAACAAGGTACTAT 59.902 42.308 0.00 0.00 38.49 2.12
2505 2929 5.420104 GCCAGGTCTAACTAACAAGGTACTA 59.580 44.000 0.00 0.00 38.49 1.82
2507 2931 4.502016 GCCAGGTCTAACTAACAAGGTAC 58.498 47.826 0.00 0.00 0.00 3.34
2508 2932 3.516700 GGCCAGGTCTAACTAACAAGGTA 59.483 47.826 0.00 0.00 0.00 3.08
2509 2933 2.305052 GGCCAGGTCTAACTAACAAGGT 59.695 50.000 0.00 0.00 0.00 3.50
2510 2934 2.304761 TGGCCAGGTCTAACTAACAAGG 59.695 50.000 0.00 0.00 0.00 3.61
2511 2935 3.695830 TGGCCAGGTCTAACTAACAAG 57.304 47.619 0.00 0.00 0.00 3.16
2512 2936 3.308117 CCATGGCCAGGTCTAACTAACAA 60.308 47.826 17.55 0.00 0.00 2.83
2513 2937 2.238646 CCATGGCCAGGTCTAACTAACA 59.761 50.000 17.55 0.00 0.00 2.41
2514 2938 2.421529 CCCATGGCCAGGTCTAACTAAC 60.422 54.545 17.55 0.00 0.00 2.34
2515 2939 1.843851 CCCATGGCCAGGTCTAACTAA 59.156 52.381 17.55 0.00 0.00 2.24
2516 2940 1.507140 CCCATGGCCAGGTCTAACTA 58.493 55.000 17.55 0.00 0.00 2.24
2517 2941 1.926426 GCCCATGGCCAGGTCTAACT 61.926 60.000 17.55 0.00 44.06 2.24
2518 2942 1.453928 GCCCATGGCCAGGTCTAAC 60.454 63.158 17.55 0.00 44.06 2.34
2519 2943 3.006677 GCCCATGGCCAGGTCTAA 58.993 61.111 17.55 0.00 44.06 2.10
2546 2970 4.570663 GTCAGGTCGGGCCGATCG 62.571 72.222 33.54 25.61 42.32 3.69
2547 2971 4.222847 GGTCAGGTCGGGCCGATC 62.223 72.222 33.54 32.40 43.70 3.69
2556 2980 2.444700 TTTTCGAGCCGGGTCAGGTC 62.445 60.000 31.39 6.84 0.00 3.85
2557 2981 2.047213 TTTTTCGAGCCGGGTCAGGT 62.047 55.000 31.39 0.00 0.00 4.00
2558 2982 1.298859 CTTTTTCGAGCCGGGTCAGG 61.299 60.000 31.39 17.34 0.00 3.86
2559 2983 1.912371 GCTTTTTCGAGCCGGGTCAG 61.912 60.000 31.39 23.13 36.66 3.51
2560 2984 1.964373 GCTTTTTCGAGCCGGGTCA 60.964 57.895 31.39 16.77 36.66 4.02
2561 2985 1.512156 TTGCTTTTTCGAGCCGGGTC 61.512 55.000 23.85 23.85 42.01 4.46
2562 2986 1.515521 CTTGCTTTTTCGAGCCGGGT 61.516 55.000 5.45 5.45 42.01 5.28
2563 2987 1.210155 CTTGCTTTTTCGAGCCGGG 59.790 57.895 2.18 0.00 42.01 5.73
2564 2988 0.110192 GTCTTGCTTTTTCGAGCCGG 60.110 55.000 0.00 0.00 42.01 6.13
2565 2989 0.110192 GGTCTTGCTTTTTCGAGCCG 60.110 55.000 0.00 0.00 42.01 5.52
2566 2990 0.241213 GGGTCTTGCTTTTTCGAGCC 59.759 55.000 0.00 0.00 42.01 4.70
2567 2991 0.951558 TGGGTCTTGCTTTTTCGAGC 59.048 50.000 0.00 0.00 43.00 5.03
2568 2992 2.287608 GGTTGGGTCTTGCTTTTTCGAG 60.288 50.000 0.00 0.00 0.00 4.04
2569 2993 1.679153 GGTTGGGTCTTGCTTTTTCGA 59.321 47.619 0.00 0.00 0.00 3.71
2570 2994 1.681264 AGGTTGGGTCTTGCTTTTTCG 59.319 47.619 0.00 0.00 0.00 3.46
2571 2995 3.118775 ACAAGGTTGGGTCTTGCTTTTTC 60.119 43.478 4.02 0.00 43.79 2.29
2572 2996 2.837591 ACAAGGTTGGGTCTTGCTTTTT 59.162 40.909 4.02 0.00 43.79 1.94
2573 2997 2.430694 GACAAGGTTGGGTCTTGCTTTT 59.569 45.455 4.02 0.00 43.79 2.27
2574 2998 2.031870 GACAAGGTTGGGTCTTGCTTT 58.968 47.619 4.02 0.00 43.79 3.51
2575 2999 1.692411 GACAAGGTTGGGTCTTGCTT 58.308 50.000 4.02 0.00 43.79 3.91
2576 3000 0.178990 GGACAAGGTTGGGTCTTGCT 60.179 55.000 4.02 0.00 43.79 3.91
2577 3001 0.467290 TGGACAAGGTTGGGTCTTGC 60.467 55.000 4.02 0.00 43.79 4.01
2578 3002 1.318576 GTGGACAAGGTTGGGTCTTG 58.681 55.000 0.00 0.00 45.03 3.02
2579 3003 0.185175 GGTGGACAAGGTTGGGTCTT 59.815 55.000 0.00 0.00 34.49 3.01
2580 3004 1.844130 GGTGGACAAGGTTGGGTCT 59.156 57.895 0.00 0.00 34.49 3.85
2581 3005 1.599797 CGGTGGACAAGGTTGGGTC 60.600 63.158 0.00 0.00 0.00 4.46
2582 3006 2.513895 CGGTGGACAAGGTTGGGT 59.486 61.111 0.00 0.00 0.00 4.51
2583 3007 2.282180 CCGGTGGACAAGGTTGGG 60.282 66.667 0.00 0.00 0.00 4.12
2584 3008 2.983592 GCCGGTGGACAAGGTTGG 60.984 66.667 1.90 0.00 0.00 3.77
2585 3009 2.113139 AGCCGGTGGACAAGGTTG 59.887 61.111 1.90 0.00 0.00 3.77
2586 3010 2.113139 CAGCCGGTGGACAAGGTT 59.887 61.111 1.90 0.00 0.00 3.50
2599 3023 4.632974 CTATGCCCGAGCCCAGCC 62.633 72.222 0.00 0.00 38.69 4.85
2600 3024 4.632974 CCTATGCCCGAGCCCAGC 62.633 72.222 0.00 0.00 38.69 4.85
2601 3025 2.270874 AAACCTATGCCCGAGCCCAG 62.271 60.000 0.00 0.00 38.69 4.45
2602 3026 2.265467 GAAACCTATGCCCGAGCCCA 62.265 60.000 0.00 0.00 38.69 5.36
2603 3027 1.526225 GAAACCTATGCCCGAGCCC 60.526 63.158 0.00 0.00 38.69 5.19
2604 3028 0.393808 TTGAAACCTATGCCCGAGCC 60.394 55.000 0.00 0.00 38.69 4.70
2605 3029 1.017387 CTTGAAACCTATGCCCGAGC 58.983 55.000 0.00 0.00 40.48 5.03
2606 3030 1.017387 GCTTGAAACCTATGCCCGAG 58.983 55.000 0.00 0.00 0.00 4.63
2607 3031 0.393808 GGCTTGAAACCTATGCCCGA 60.394 55.000 0.00 0.00 37.81 5.14
2608 3032 2.106844 GGCTTGAAACCTATGCCCG 58.893 57.895 0.00 0.00 37.81 6.13
2610 3034 0.393808 TCGGGCTTGAAACCTATGCC 60.394 55.000 0.00 0.00 42.56 4.40
2611 3035 0.733150 GTCGGGCTTGAAACCTATGC 59.267 55.000 0.00 0.00 0.00 3.14
2612 3036 1.006832 CGTCGGGCTTGAAACCTATG 58.993 55.000 0.00 0.00 0.00 2.23
2613 3037 0.743345 GCGTCGGGCTTGAAACCTAT 60.743 55.000 0.00 0.00 39.11 2.57
2614 3038 1.375013 GCGTCGGGCTTGAAACCTA 60.375 57.895 0.00 0.00 39.11 3.08
2615 3039 2.668550 GCGTCGGGCTTGAAACCT 60.669 61.111 0.00 0.00 39.11 3.50
2616 3040 3.733960 GGCGTCGGGCTTGAAACC 61.734 66.667 0.00 0.00 42.94 3.27
2617 3041 3.733960 GGGCGTCGGGCTTGAAAC 61.734 66.667 0.00 0.00 42.94 2.78
2642 3066 2.446036 AGGCCTATGGGTCCGGAC 60.446 66.667 27.04 27.04 38.13 4.79
2643 3067 2.445845 CAGGCCTATGGGTCCGGA 60.446 66.667 3.98 0.00 38.13 5.14
2644 3068 3.560251 CCAGGCCTATGGGTCCGG 61.560 72.222 3.98 0.00 38.13 5.14
2645 3069 4.256180 GCCAGGCCTATGGGTCCG 62.256 72.222 3.98 0.00 40.97 4.79
2646 3070 4.256180 CGCCAGGCCTATGGGTCC 62.256 72.222 3.98 0.00 40.97 4.46
2647 3071 4.256180 CCGCCAGGCCTATGGGTC 62.256 72.222 3.98 0.00 40.97 4.46
2657 3081 1.754234 ATGCTAAAAGCCCGCCAGG 60.754 57.895 0.00 0.00 41.51 4.45
2658 3082 1.031571 TCATGCTAAAAGCCCGCCAG 61.032 55.000 0.00 0.00 41.51 4.85
2659 3083 0.395586 ATCATGCTAAAAGCCCGCCA 60.396 50.000 0.00 0.00 41.51 5.69
2660 3084 0.031178 CATCATGCTAAAAGCCCGCC 59.969 55.000 0.00 0.00 41.51 6.13
2661 3085 0.031178 CCATCATGCTAAAAGCCCGC 59.969 55.000 0.00 0.00 41.51 6.13
2662 3086 0.670162 CCCATCATGCTAAAAGCCCG 59.330 55.000 0.00 0.00 41.51 6.13
2663 3087 0.390492 GCCCATCATGCTAAAAGCCC 59.610 55.000 0.00 0.00 41.51 5.19
2664 3088 0.390492 GGCCCATCATGCTAAAAGCC 59.610 55.000 0.00 0.00 41.51 4.35
2665 3089 0.031178 CGGCCCATCATGCTAAAAGC 59.969 55.000 0.00 0.00 42.82 3.51
2666 3090 0.670162 CCGGCCCATCATGCTAAAAG 59.330 55.000 0.00 0.00 0.00 2.27
2667 3091 0.754957 CCCGGCCCATCATGCTAAAA 60.755 55.000 0.00 0.00 0.00 1.52
2668 3092 1.152777 CCCGGCCCATCATGCTAAA 60.153 57.895 0.00 0.00 0.00 1.85
2669 3093 2.515398 CCCGGCCCATCATGCTAA 59.485 61.111 0.00 0.00 0.00 3.09
2670 3094 4.269523 GCCCGGCCCATCATGCTA 62.270 66.667 0.00 0.00 0.00 3.49
2715 3139 2.600470 AAAAACCCAGGCCCGAGC 60.600 61.111 0.00 0.00 38.76 5.03
2729 3153 1.543802 CTACCAAGCCCGATGCAAAAA 59.456 47.619 0.00 0.00 44.83 1.94
2730 3154 1.173043 CTACCAAGCCCGATGCAAAA 58.827 50.000 0.00 0.00 44.83 2.44
2731 3155 0.679640 CCTACCAAGCCCGATGCAAA 60.680 55.000 0.00 0.00 44.83 3.68
2732 3156 1.077787 CCTACCAAGCCCGATGCAA 60.078 57.895 0.00 0.00 44.83 4.08
2733 3157 2.589540 CCTACCAAGCCCGATGCA 59.410 61.111 0.00 0.00 44.83 3.96
2734 3158 2.902343 GCCTACCAAGCCCGATGC 60.902 66.667 0.00 0.00 41.71 3.91
2735 3159 2.203209 GGCCTACCAAGCCCGATG 60.203 66.667 0.00 0.00 45.16 3.84
2750 3174 4.256180 CCATCTGTAGGGCCGGGC 62.256 72.222 22.00 22.00 0.00 6.13
2756 3180 4.974645 TTATAACTGGCCATCTGTAGGG 57.025 45.455 5.51 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.