Multiple sequence alignment - TraesCS3B01G166900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G166900
chr3B
100.000
2816
0
0
1
2816
166716756
166713941
0.000000e+00
5201.0
1
TraesCS3B01G166900
chr3D
92.862
1429
47
18
686
2108
114074749
114076128
0.000000e+00
2023.0
2
TraesCS3B01G166900
chr3D
85.863
672
37
29
2156
2816
114076127
114076751
0.000000e+00
662.0
3
TraesCS3B01G166900
chr3D
97.297
37
1
0
651
687
114074629
114074665
2.340000e-06
63.9
4
TraesCS3B01G166900
chr3A
91.395
1290
71
21
654
1926
109867862
109869128
0.000000e+00
1731.0
5
TraesCS3B01G166900
chr3A
85.151
431
37
10
2400
2816
109869317
109869734
1.560000e-112
416.0
6
TraesCS3B01G166900
chr3A
85.714
147
15
2
1964
2104
109869120
109869266
1.750000e-32
150.0
7
TraesCS3B01G166900
chr2D
89.570
604
41
4
40
636
598626690
598627278
0.000000e+00
747.0
8
TraesCS3B01G166900
chr6B
82.580
597
90
9
40
628
87583588
87584178
5.380000e-142
514.0
9
TraesCS3B01G166900
chr6B
92.661
109
8
0
1066
1174
10902561
10902669
1.040000e-34
158.0
10
TraesCS3B01G166900
chr6B
92.523
107
7
1
1068
1174
10937317
10937212
4.860000e-33
152.0
11
TraesCS3B01G166900
chr7A
77.889
597
115
11
40
626
149263149
149263738
3.450000e-94
355.0
12
TraesCS3B01G166900
chr5A
91.346
104
9
0
1066
1169
528481094
528480991
2.920000e-30
143.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G166900
chr3B
166713941
166716756
2815
True
5201.000000
5201
100.000000
1
2816
1
chr3B.!!$R1
2815
1
TraesCS3B01G166900
chr3D
114074629
114076751
2122
False
916.300000
2023
92.007333
651
2816
3
chr3D.!!$F1
2165
2
TraesCS3B01G166900
chr3A
109867862
109869734
1872
False
765.666667
1731
87.420000
654
2816
3
chr3A.!!$F1
2162
3
TraesCS3B01G166900
chr2D
598626690
598627278
588
False
747.000000
747
89.570000
40
636
1
chr2D.!!$F1
596
4
TraesCS3B01G166900
chr6B
87583588
87584178
590
False
514.000000
514
82.580000
40
628
1
chr6B.!!$F2
588
5
TraesCS3B01G166900
chr7A
149263149
149263738
589
False
355.000000
355
77.889000
40
626
1
chr7A.!!$F1
586
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
637
645
0.033699
ATCCCCTTCAAGCTTGCCTC
60.034
55.0
21.99
0.0
0.0
4.7
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2340
2482
0.03563
CTGAAGGAACTGGCTGGGAG
60.036
60.0
0.0
0.0
40.86
4.3
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
25
26
3.057548
CTTGGTCAGCATGCGCCA
61.058
61.111
21.82
21.82
38.66
5.69
26
27
2.361483
TTGGTCAGCATGCGCCAT
60.361
55.556
24.68
2.13
39.74
4.40
27
28
2.607668
CTTGGTCAGCATGCGCCATG
62.608
60.000
24.68
22.66
43.91
3.66
34
35
4.201679
CATGCGCCATGCCTGTGG
62.202
66.667
4.18
0.00
45.60
4.17
35
36
4.746309
ATGCGCCATGCCTGTGGT
62.746
61.111
4.18
0.00
45.60
4.16
131
132
8.092687
AGCCAATGCATCATATTATTTTTCTCC
58.907
33.333
0.00
0.00
41.13
3.71
136
137
8.922931
TGCATCATATTATTTTTCTCCTGCTA
57.077
30.769
0.00
0.00
0.00
3.49
170
171
8.152898
CAGAACCTACAGATCATCATTCCAATA
58.847
37.037
0.00
0.00
0.00
1.90
215
216
4.397417
AGATCAAAGCAGGACATAGCAAAC
59.603
41.667
0.00
0.00
0.00
2.93
225
226
3.006940
GACATAGCAAACGTTGGGATGA
58.993
45.455
0.00
0.00
0.00
2.92
231
232
0.179004
AAACGTTGGGATGACCTGCA
60.179
50.000
0.00
0.00
41.11
4.41
303
304
1.620323
GCCAACCCTGAATTTTCTGCT
59.380
47.619
0.00
0.00
0.00
4.24
310
311
6.313519
ACCCTGAATTTTCTGCTAGATACA
57.686
37.500
0.00
0.00
0.00
2.29
346
347
4.561105
TCAAAAACGTGTTTCCTTGCTTT
58.439
34.783
0.00
0.00
31.45
3.51
362
363
2.304470
TGCTTTGCCTACATACACTGGA
59.696
45.455
0.00
0.00
0.00
3.86
368
369
2.092914
GCCTACATACACTGGAAAGCCT
60.093
50.000
0.00
0.00
34.31
4.58
369
370
3.134081
GCCTACATACACTGGAAAGCCTA
59.866
47.826
0.00
0.00
34.31
3.93
370
371
4.740934
GCCTACATACACTGGAAAGCCTAG
60.741
50.000
0.00
0.00
34.31
3.02
371
372
4.649674
CCTACATACACTGGAAAGCCTAGA
59.350
45.833
0.00
0.00
34.31
2.43
374
375
6.163135
ACATACACTGGAAAGCCTAGATAC
57.837
41.667
0.00
0.00
34.31
2.24
437
445
3.131155
TGCCTTTGCACTTGGCTG
58.869
55.556
20.07
0.00
44.23
4.85
446
454
1.133945
TGCACTTGGCTGGTGTTCTTA
60.134
47.619
10.83
0.00
45.15
2.10
503
511
0.685097
GGCCCGAGCATACCTCATAA
59.315
55.000
0.00
0.00
40.78
1.90
541
549
2.165234
GCAGTGATGTAGCACTCTCTCA
59.835
50.000
0.00
0.00
45.54
3.27
553
561
3.122111
GCACTCTCTCACGAAGCTTTAAC
59.878
47.826
0.00
0.00
0.00
2.01
602
610
2.296073
AATGGTTAAAACTCGGGGCA
57.704
45.000
0.00
0.00
0.00
5.36
632
640
3.933861
ATACGAATCCCCTTCAAGCTT
57.066
42.857
0.00
0.00
33.10
3.74
633
641
1.826385
ACGAATCCCCTTCAAGCTTG
58.174
50.000
20.81
20.81
33.10
4.01
635
643
0.820226
GAATCCCCTTCAAGCTTGCC
59.180
55.000
21.99
0.00
33.78
4.52
636
644
0.411058
AATCCCCTTCAAGCTTGCCT
59.589
50.000
21.99
0.00
0.00
4.75
637
645
0.033699
ATCCCCTTCAAGCTTGCCTC
60.034
55.000
21.99
0.00
0.00
4.70
638
646
1.075482
CCCCTTCAAGCTTGCCTCA
59.925
57.895
21.99
0.99
0.00
3.86
639
647
0.964358
CCCCTTCAAGCTTGCCTCAG
60.964
60.000
21.99
13.38
0.00
3.35
640
648
0.964358
CCCTTCAAGCTTGCCTCAGG
60.964
60.000
21.99
20.35
0.00
3.86
650
658
3.719121
GCCTCAGGCCTCTTCAGA
58.281
61.111
3.37
0.00
44.06
3.27
651
659
1.521616
GCCTCAGGCCTCTTCAGAG
59.478
63.158
3.37
6.12
44.06
3.35
652
660
0.975040
GCCTCAGGCCTCTTCAGAGA
60.975
60.000
16.65
2.82
44.06
3.10
697
790
6.595794
CCTCGAGCGTTCTAAATTTTAACAA
58.404
36.000
6.99
0.00
0.00
2.83
705
798
9.716484
GCGTTCTAAATTTTAACAAAAATACCG
57.284
29.630
13.41
0.00
33.47
4.02
736
829
9.845214
AGTATTATCCCACCTTCAGATATTACT
57.155
33.333
0.00
0.00
36.16
2.24
787
881
2.251893
GCTTCTACTGTCTACGTGTGC
58.748
52.381
0.00
0.00
0.00
4.57
923
1024
1.873698
CCGTATTTATCCCACCACCG
58.126
55.000
0.00
0.00
0.00
4.94
934
1036
0.964860
CCACCACCGCCAATCAATCA
60.965
55.000
0.00
0.00
0.00
2.57
935
1037
0.887247
CACCACCGCCAATCAATCAA
59.113
50.000
0.00
0.00
0.00
2.57
938
1040
1.402720
CCACCGCCAATCAATCAACAC
60.403
52.381
0.00
0.00
0.00
3.32
941
1043
1.811965
CCGCCAATCAATCAACACAGA
59.188
47.619
0.00
0.00
0.00
3.41
969
1075
2.824041
CCCGAGCCCCACAATTCG
60.824
66.667
0.00
0.00
0.00
3.34
986
1092
2.063979
CGCATCCCCCACTCCACTA
61.064
63.158
0.00
0.00
0.00
2.74
987
1093
1.410850
CGCATCCCCCACTCCACTAT
61.411
60.000
0.00
0.00
0.00
2.12
1124
1231
1.008652
CGTACGACGTGGTGGACAA
60.009
57.895
10.44
0.00
36.74
3.18
1197
1304
1.369321
GCCCATCGAGGACATCTCC
59.631
63.158
0.00
0.00
41.22
3.71
1260
1367
2.045045
TCCCTTCGCCATTGCCAG
60.045
61.111
0.00
0.00
0.00
4.85
1261
1368
2.045045
CCCTTCGCCATTGCCAGA
60.045
61.111
0.00
0.00
0.00
3.86
1262
1369
1.454479
CCCTTCGCCATTGCCAGAT
60.454
57.895
0.00
0.00
0.00
2.90
1263
1370
1.450531
CCCTTCGCCATTGCCAGATC
61.451
60.000
0.00
0.00
0.00
2.75
1264
1371
0.749091
CCTTCGCCATTGCCAGATCA
60.749
55.000
0.00
0.00
0.00
2.92
1265
1372
0.379669
CTTCGCCATTGCCAGATCAC
59.620
55.000
0.00
0.00
0.00
3.06
1266
1373
1.368345
TTCGCCATTGCCAGATCACG
61.368
55.000
0.00
0.00
0.00
4.35
1267
1374
2.410469
GCCATTGCCAGATCACGC
59.590
61.111
0.00
0.00
0.00
5.34
1268
1375
2.711311
CCATTGCCAGATCACGCG
59.289
61.111
3.53
3.53
0.00
6.01
1269
1376
2.023741
CATTGCCAGATCACGCGC
59.976
61.111
5.73
0.00
0.00
6.86
1270
1377
2.436469
ATTGCCAGATCACGCGCA
60.436
55.556
5.73
0.00
0.00
6.09
1271
1378
2.039974
ATTGCCAGATCACGCGCAA
61.040
52.632
5.73
10.03
44.62
4.85
1272
1379
2.257286
ATTGCCAGATCACGCGCAAC
62.257
55.000
5.73
0.00
43.44
4.17
1273
1380
3.121030
GCCAGATCACGCGCAACT
61.121
61.111
5.73
0.00
0.00
3.16
1274
1381
2.680913
GCCAGATCACGCGCAACTT
61.681
57.895
5.73
0.00
0.00
2.66
1275
1382
1.133253
CCAGATCACGCGCAACTTG
59.867
57.895
5.73
0.00
0.00
3.16
1276
1383
1.510623
CAGATCACGCGCAACTTGC
60.511
57.895
5.73
3.44
40.69
4.01
1277
1384
1.669115
AGATCACGCGCAACTTGCT
60.669
52.632
5.73
0.00
42.25
3.91
1278
1385
1.225854
GATCACGCGCAACTTGCTC
60.226
57.895
5.73
2.90
42.25
4.26
1361
1475
3.201266
TGGGATAACAATAACGGGCTTCT
59.799
43.478
0.00
0.00
0.00
2.85
1369
1483
4.215613
ACAATAACGGGCTTCTCTTGTTTC
59.784
41.667
0.00
0.00
0.00
2.78
1531
1645
2.809601
CGAAGAACCAGGCGGACG
60.810
66.667
2.43
0.00
35.59
4.79
1743
1857
1.663388
CGTGGCGCAGTACAACTCA
60.663
57.895
10.83
0.00
0.00
3.41
1817
1931
0.736325
GCCGCGTCTGACATGTAACT
60.736
55.000
4.92
0.00
0.00
2.24
1818
1932
0.992072
CCGCGTCTGACATGTAACTG
59.008
55.000
4.92
0.00
0.00
3.16
1819
1933
1.668919
CCGCGTCTGACATGTAACTGT
60.669
52.381
4.92
0.00
0.00
3.55
1820
1934
1.386748
CGCGTCTGACATGTAACTGTG
59.613
52.381
8.73
0.00
0.00
3.66
1821
1935
1.126846
GCGTCTGACATGTAACTGTGC
59.873
52.381
8.73
0.00
0.00
4.57
1822
1936
2.403259
CGTCTGACATGTAACTGTGCA
58.597
47.619
8.73
0.00
0.00
4.57
1823
1937
2.799978
CGTCTGACATGTAACTGTGCAA
59.200
45.455
8.73
0.00
0.00
4.08
1824
1938
3.120889
CGTCTGACATGTAACTGTGCAAG
60.121
47.826
8.73
0.00
0.00
4.01
1825
1939
2.807967
TCTGACATGTAACTGTGCAAGC
59.192
45.455
0.00
0.00
0.00
4.01
1826
1940
2.810274
CTGACATGTAACTGTGCAAGCT
59.190
45.455
0.00
0.00
0.00
3.74
1827
1941
3.213506
TGACATGTAACTGTGCAAGCTT
58.786
40.909
0.00
0.00
0.00
3.74
1828
1942
3.003585
TGACATGTAACTGTGCAAGCTTG
59.996
43.478
22.44
22.44
0.00
4.01
1829
1943
2.951642
ACATGTAACTGTGCAAGCTTGT
59.048
40.909
26.55
9.15
0.00
3.16
1830
1944
3.381272
ACATGTAACTGTGCAAGCTTGTT
59.619
39.130
26.55
15.16
0.00
2.83
1831
1945
3.419264
TGTAACTGTGCAAGCTTGTTG
57.581
42.857
26.55
16.03
0.00
3.33
1832
1946
2.119457
GTAACTGTGCAAGCTTGTTGC
58.881
47.619
26.55
14.89
45.11
4.17
1863
1994
7.327275
GGCTAGATTAATCAGTGAACTCGTATG
59.673
40.741
17.56
0.00
0.00
2.39
1889
2022
7.631717
AAGAGTGTCTTGTCTTTTAAGCTTT
57.368
32.000
3.20
0.00
34.98
3.51
1894
2027
8.994170
AGTGTCTTGTCTTTTAAGCTTTCTATC
58.006
33.333
3.20
0.00
0.00
2.08
1917
2050
1.145803
GCCGACGAATAATGGTAGCC
58.854
55.000
0.00
0.00
0.00
3.93
1929
2065
7.148573
CGAATAATGGTAGCCTATAAACTGCTG
60.149
40.741
0.00
0.00
36.57
4.41
1934
2070
2.924421
AGCCTATAAACTGCTGAAGCC
58.076
47.619
0.00
0.00
41.18
4.35
1937
2073
3.181496
GCCTATAAACTGCTGAAGCCAAC
60.181
47.826
0.00
0.00
41.18
3.77
1940
2076
5.294552
CCTATAAACTGCTGAAGCCAACTAC
59.705
44.000
0.00
0.00
41.18
2.73
1942
2078
2.464157
ACTGCTGAAGCCAACTACTC
57.536
50.000
0.00
0.00
41.18
2.59
1943
2079
1.002544
ACTGCTGAAGCCAACTACTCC
59.997
52.381
0.00
0.00
41.18
3.85
1944
2080
1.277557
CTGCTGAAGCCAACTACTCCT
59.722
52.381
0.00
0.00
41.18
3.69
1945
2081
2.497675
CTGCTGAAGCCAACTACTCCTA
59.502
50.000
0.00
0.00
41.18
2.94
1946
2082
2.497675
TGCTGAAGCCAACTACTCCTAG
59.502
50.000
0.00
0.00
41.18
3.02
1947
2083
2.498078
GCTGAAGCCAACTACTCCTAGT
59.502
50.000
0.00
0.00
32.76
2.57
1948
2084
3.677424
GCTGAAGCCAACTACTCCTAGTG
60.677
52.174
0.00
0.00
32.17
2.74
1949
2085
3.507411
TGAAGCCAACTACTCCTAGTGT
58.493
45.455
0.00
0.00
33.14
3.55
1971
2107
1.535028
CTGTTTTGCGCTGTATGGACA
59.465
47.619
9.73
3.22
0.00
4.02
1990
2126
0.740737
ATGCGAGCAATAAAGTGCCC
59.259
50.000
0.57
0.00
46.14
5.36
2043
2185
0.998727
GCCTGTTGCTTTCTTTCGCG
60.999
55.000
0.00
0.00
36.87
5.87
2054
2196
3.854286
TTCTTTCGCGTTTGAGAAGAC
57.146
42.857
5.77
0.00
35.28
3.01
2061
2203
1.531578
GCGTTTGAGAAGACTGTTCCC
59.468
52.381
0.00
0.00
0.00
3.97
2088
2230
8.674925
TGATACGTTTCCTATAAATATCCCCT
57.325
34.615
0.00
0.00
0.00
4.79
2104
2246
2.586079
CTGCTATCACACCGGCGG
60.586
66.667
27.06
27.06
0.00
6.13
2114
2256
4.096003
ACCGGCGGTGCTGCTAAT
62.096
61.111
33.71
1.44
32.98
1.73
2115
2257
2.824041
CCGGCGGTGCTGCTAATT
60.824
61.111
19.97
0.00
32.89
1.40
2116
2258
2.406616
CCGGCGGTGCTGCTAATTT
61.407
57.895
19.97
0.00
32.89
1.82
2117
2259
1.506262
CGGCGGTGCTGCTAATTTT
59.494
52.632
0.00
0.00
34.52
1.82
2118
2260
0.109319
CGGCGGTGCTGCTAATTTTT
60.109
50.000
0.00
0.00
34.52
1.94
2142
2284
5.772825
TTTTCTTTCCATGGACTGTTCTG
57.227
39.130
15.91
0.00
0.00
3.02
2143
2285
2.783135
TCTTTCCATGGACTGTTCTGC
58.217
47.619
15.91
0.00
0.00
4.26
2144
2286
2.373169
TCTTTCCATGGACTGTTCTGCT
59.627
45.455
15.91
0.00
0.00
4.24
2145
2287
2.189594
TTCCATGGACTGTTCTGCTG
57.810
50.000
15.91
0.00
0.00
4.41
2146
2288
0.321919
TCCATGGACTGTTCTGCTGC
60.322
55.000
11.44
0.00
0.00
5.25
2148
2290
1.065926
CCATGGACTGTTCTGCTGCTA
60.066
52.381
5.56
0.00
0.00
3.49
2149
2291
2.421107
CCATGGACTGTTCTGCTGCTAT
60.421
50.000
5.56
0.00
0.00
2.97
2151
2293
3.423539
TGGACTGTTCTGCTGCTATTT
57.576
42.857
0.00
0.00
0.00
1.40
2152
2294
3.076621
TGGACTGTTCTGCTGCTATTTG
58.923
45.455
0.00
0.00
0.00
2.32
2154
2296
3.126000
GGACTGTTCTGCTGCTATTTGTC
59.874
47.826
0.00
2.86
0.00
3.18
2155
2297
2.738846
ACTGTTCTGCTGCTATTTGTCG
59.261
45.455
0.00
0.00
0.00
4.35
2173
2315
1.806542
TCGCAGCTGAAGAATCAAACC
59.193
47.619
20.43
0.00
34.49
3.27
2178
2320
2.039084
AGCTGAAGAATCAAACCGAGGT
59.961
45.455
0.00
0.00
34.49
3.85
2182
2324
2.474410
AGAATCAAACCGAGGTGTCC
57.526
50.000
0.00
0.00
0.00
4.02
2183
2325
1.076332
GAATCAAACCGAGGTGTCCG
58.924
55.000
0.00
0.00
0.00
4.79
2184
2326
0.682852
AATCAAACCGAGGTGTCCGA
59.317
50.000
0.00
0.00
0.00
4.55
2185
2327
0.682852
ATCAAACCGAGGTGTCCGAA
59.317
50.000
0.00
0.00
0.00
4.30
2186
2328
0.682852
TCAAACCGAGGTGTCCGAAT
59.317
50.000
0.00
0.00
0.00
3.34
2188
2330
0.036671
AAACCGAGGTGTCCGAATCC
60.037
55.000
0.00
0.00
0.00
3.01
2189
2331
1.189524
AACCGAGGTGTCCGAATCCA
61.190
55.000
0.00
0.00
0.00
3.41
2190
2332
1.189524
ACCGAGGTGTCCGAATCCAA
61.190
55.000
0.00
0.00
0.00
3.53
2204
2346
3.123621
CGAATCCAAGTTTCTTCCGTCAG
59.876
47.826
0.00
0.00
0.00
3.51
2210
2352
2.484889
AGTTTCTTCCGTCAGCTCAAC
58.515
47.619
0.00
0.00
0.00
3.18
2216
2358
0.976641
TCCGTCAGCTCAACCAGAAT
59.023
50.000
0.00
0.00
0.00
2.40
2239
2381
3.065510
CGGTGATTCTCACTACATCGACT
59.934
47.826
7.17
0.00
46.19
4.18
2240
2382
4.355437
GGTGATTCTCACTACATCGACTG
58.645
47.826
7.17
0.00
46.19
3.51
2241
2383
3.794028
GTGATTCTCACTACATCGACTGC
59.206
47.826
0.00
0.00
43.73
4.40
2242
2384
3.443681
TGATTCTCACTACATCGACTGCA
59.556
43.478
0.00
0.00
0.00
4.41
2243
2385
3.494045
TTCTCACTACATCGACTGCAG
57.506
47.619
13.48
13.48
0.00
4.41
2250
2392
0.250038
ACATCGACTGCAGTGCACTT
60.250
50.000
27.27
1.55
33.79
3.16
2265
2407
2.224597
TGCACTTTCTCTTGGAGCATCA
60.225
45.455
0.00
0.00
36.25
3.07
2268
2410
3.436015
CACTTTCTCTTGGAGCATCACTG
59.564
47.826
0.00
0.00
36.25
3.66
2269
2411
2.775911
TTCTCTTGGAGCATCACTGG
57.224
50.000
0.00
0.00
36.25
4.00
2270
2412
0.251354
TCTCTTGGAGCATCACTGGC
59.749
55.000
0.00
0.00
36.25
4.85
2271
2413
0.252479
CTCTTGGAGCATCACTGGCT
59.748
55.000
0.00
0.00
46.07
4.75
2272
2414
1.483827
CTCTTGGAGCATCACTGGCTA
59.516
52.381
0.00
0.00
42.78
3.93
2273
2415
1.208052
TCTTGGAGCATCACTGGCTAC
59.792
52.381
0.00
0.00
42.78
3.58
2276
2418
2.338577
GGAGCATCACTGGCTACAAT
57.661
50.000
0.00
0.00
41.99
2.71
2286
2428
2.501723
ACTGGCTACAATAGGGAGTGTG
59.498
50.000
0.00
0.00
34.10
3.82
2287
2429
2.501723
CTGGCTACAATAGGGAGTGTGT
59.498
50.000
0.00
0.00
34.10
3.72
2288
2430
3.704566
CTGGCTACAATAGGGAGTGTGTA
59.295
47.826
0.00
0.00
34.10
2.90
2289
2431
3.449737
TGGCTACAATAGGGAGTGTGTAC
59.550
47.826
0.00
0.00
34.10
2.90
2290
2432
3.490419
GGCTACAATAGGGAGTGTGTACG
60.490
52.174
0.00
0.00
34.10
3.67
2303
2445
1.069296
TGTGTACGTACGTGCTACCAC
60.069
52.381
31.45
24.98
38.62
4.16
2310
2452
2.186350
TACGTGCTACCACCGACGTG
62.186
60.000
0.00
0.00
44.32
4.49
2324
2466
4.047030
CGTGGCGACGTACAGTAC
57.953
61.111
13.58
0.00
40.91
2.73
2341
2483
6.187125
ACAGTACGTACATAACATCGAACT
57.813
37.500
26.55
0.48
0.00
3.01
2343
2485
5.680229
CAGTACGTACATAACATCGAACTCC
59.320
44.000
26.55
0.00
0.00
3.85
2344
2486
4.037858
ACGTACATAACATCGAACTCCC
57.962
45.455
0.00
0.00
0.00
4.30
2345
2487
3.444742
ACGTACATAACATCGAACTCCCA
59.555
43.478
0.00
0.00
0.00
4.37
2346
2488
4.042398
CGTACATAACATCGAACTCCCAG
58.958
47.826
0.00
0.00
0.00
4.45
2347
2489
2.906354
ACATAACATCGAACTCCCAGC
58.094
47.619
0.00
0.00
0.00
4.85
2348
2490
2.213499
CATAACATCGAACTCCCAGCC
58.787
52.381
0.00
0.00
0.00
4.85
2349
2491
1.271856
TAACATCGAACTCCCAGCCA
58.728
50.000
0.00
0.00
0.00
4.75
2350
2492
0.036010
AACATCGAACTCCCAGCCAG
60.036
55.000
0.00
0.00
0.00
4.85
2351
2493
1.194781
ACATCGAACTCCCAGCCAGT
61.195
55.000
0.00
0.00
0.00
4.00
2352
2494
0.036010
CATCGAACTCCCAGCCAGTT
60.036
55.000
0.00
0.00
36.77
3.16
2353
2495
0.250513
ATCGAACTCCCAGCCAGTTC
59.749
55.000
0.00
2.98
44.35
3.01
2354
2496
1.376037
CGAACTCCCAGCCAGTTCC
60.376
63.158
6.93
0.00
44.78
3.62
2355
2497
1.831652
CGAACTCCCAGCCAGTTCCT
61.832
60.000
6.93
0.00
44.78
3.36
2356
2498
0.402121
GAACTCCCAGCCAGTTCCTT
59.598
55.000
1.76
0.00
42.73
3.36
2357
2499
0.402121
AACTCCCAGCCAGTTCCTTC
59.598
55.000
0.00
0.00
27.00
3.46
2358
2500
0.768221
ACTCCCAGCCAGTTCCTTCA
60.768
55.000
0.00
0.00
0.00
3.02
2359
2501
0.035630
CTCCCAGCCAGTTCCTTCAG
60.036
60.000
0.00
0.00
0.00
3.02
2360
2502
1.676967
CCCAGCCAGTTCCTTCAGC
60.677
63.158
0.00
0.00
0.00
4.26
2361
2503
2.037136
CCAGCCAGTTCCTTCAGCG
61.037
63.158
0.00
0.00
0.00
5.18
2362
2504
1.004560
CAGCCAGTTCCTTCAGCGA
60.005
57.895
0.00
0.00
0.00
4.93
2363
2505
0.392193
CAGCCAGTTCCTTCAGCGAT
60.392
55.000
0.00
0.00
0.00
4.58
2364
2506
0.107945
AGCCAGTTCCTTCAGCGATC
60.108
55.000
0.00
0.00
0.00
3.69
2365
2507
1.424493
GCCAGTTCCTTCAGCGATCG
61.424
60.000
11.69
11.69
0.00
3.69
2366
2508
0.807667
CCAGTTCCTTCAGCGATCGG
60.808
60.000
18.30
0.48
0.00
4.18
2367
2509
0.108615
CAGTTCCTTCAGCGATCGGT
60.109
55.000
15.21
15.21
0.00
4.69
2368
2510
0.173708
AGTTCCTTCAGCGATCGGTC
59.826
55.000
18.38
4.23
0.00
4.79
2394
2536
3.873952
GCAGCTCATTTTTCTCTCCGTAT
59.126
43.478
0.00
0.00
0.00
3.06
2395
2537
5.050490
GCAGCTCATTTTTCTCTCCGTATA
58.950
41.667
0.00
0.00
0.00
1.47
2408
2550
0.179156
CCGTATAACAGACGTGCGGT
60.179
55.000
0.00
0.00
38.65
5.68
2489
2637
3.299190
CCGATCTCCTCTCCCCGC
61.299
72.222
0.00
0.00
0.00
6.13
2518
2666
1.328279
TCACTCGGCTCAAAGAGTCA
58.672
50.000
0.00
0.00
44.98
3.41
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
8
9
2.412323
ATGGCGCATGCTGACCAAG
61.412
57.895
22.67
5.25
42.25
3.61
9
10
2.361483
ATGGCGCATGCTGACCAA
60.361
55.556
22.67
10.47
42.25
3.67
10
11
3.135457
CATGGCGCATGCTGACCA
61.135
61.111
21.56
21.56
42.25
4.02
18
19
4.746309
ACCACAGGCATGGCGCAT
62.746
61.111
14.30
0.00
44.33
4.73
21
22
3.974835
TAGCACCACAGGCATGGCG
62.975
63.158
14.30
11.27
44.33
5.69
22
23
1.660560
CTTAGCACCACAGGCATGGC
61.661
60.000
12.14
12.14
44.33
4.40
23
24
1.660560
GCTTAGCACCACAGGCATGG
61.661
60.000
2.31
6.28
46.10
3.66
24
25
1.660560
GGCTTAGCACCACAGGCATG
61.661
60.000
6.53
0.00
33.36
4.06
25
26
1.379044
GGCTTAGCACCACAGGCAT
60.379
57.895
6.53
0.00
33.36
4.40
26
27
2.034066
GGCTTAGCACCACAGGCA
59.966
61.111
6.53
0.00
33.36
4.75
27
28
2.515996
TACGGCTTAGCACCACAGGC
62.516
60.000
6.53
0.00
0.00
4.85
28
29
0.460284
CTACGGCTTAGCACCACAGG
60.460
60.000
6.53
0.00
0.00
4.00
29
30
0.530744
TCTACGGCTTAGCACCACAG
59.469
55.000
6.53
0.00
0.00
3.66
30
31
1.134818
CATCTACGGCTTAGCACCACA
60.135
52.381
6.53
0.00
0.00
4.17
31
32
1.134788
ACATCTACGGCTTAGCACCAC
60.135
52.381
6.53
0.00
0.00
4.16
32
33
1.136305
GACATCTACGGCTTAGCACCA
59.864
52.381
6.53
0.00
0.00
4.17
33
34
1.854227
GACATCTACGGCTTAGCACC
58.146
55.000
6.53
0.00
0.00
5.01
34
35
1.478137
CGACATCTACGGCTTAGCAC
58.522
55.000
6.53
0.00
0.00
4.40
35
36
0.248907
GCGACATCTACGGCTTAGCA
60.249
55.000
6.53
0.00
0.00
3.49
36
37
1.269444
CGCGACATCTACGGCTTAGC
61.269
60.000
0.00
0.00
0.00
3.09
37
38
0.660595
CCGCGACATCTACGGCTTAG
60.661
60.000
8.23
0.00
40.55
2.18
38
39
1.096967
TCCGCGACATCTACGGCTTA
61.097
55.000
8.23
0.00
46.49
3.09
70
71
1.140052
TGACAAAGCCGAAGAAGGACA
59.860
47.619
0.00
0.00
0.00
4.02
131
132
0.749454
GGTTCTGGTGGGCATAGCAG
60.749
60.000
12.27
12.27
45.14
4.24
136
137
0.620556
CTGTAGGTTCTGGTGGGCAT
59.379
55.000
0.00
0.00
0.00
4.40
170
171
1.072331
ACCAAGACGCTTTGTGAGGAT
59.928
47.619
0.00
0.00
0.00
3.24
215
216
1.302431
TGTGCAGGTCATCCCAACG
60.302
57.895
0.00
0.00
34.66
4.10
225
226
2.680974
ATCAAGGCGTGTGTGCAGGT
62.681
55.000
0.00
0.00
36.28
4.00
231
232
3.671008
TGTACTAATCAAGGCGTGTGT
57.329
42.857
0.00
0.00
0.00
3.72
310
311
9.541143
AACACGTTTTTGAATATTTGAAGGATT
57.459
25.926
0.00
0.00
0.00
3.01
346
347
2.355716
GGCTTTCCAGTGTATGTAGGCA
60.356
50.000
0.00
0.00
0.00
4.75
362
363
4.767928
CGGAGAGGTATGTATCTAGGCTTT
59.232
45.833
0.00
0.00
0.00
3.51
368
369
5.241064
GCAAAGACGGAGAGGTATGTATCTA
59.759
44.000
0.00
0.00
0.00
1.98
369
370
4.038162
GCAAAGACGGAGAGGTATGTATCT
59.962
45.833
0.00
0.00
0.00
1.98
370
371
4.299978
GCAAAGACGGAGAGGTATGTATC
58.700
47.826
0.00
0.00
0.00
2.24
371
372
3.069729
GGCAAAGACGGAGAGGTATGTAT
59.930
47.826
0.00
0.00
0.00
2.29
374
375
1.482593
AGGCAAAGACGGAGAGGTATG
59.517
52.381
0.00
0.00
0.00
2.39
446
454
5.069119
TGACAAGTACTCTGTCATGTTCAGT
59.931
40.000
24.58
7.30
37.61
3.41
462
470
6.072175
GGCCAAGTTGTGAATTATGACAAGTA
60.072
38.462
0.00
0.00
35.19
2.24
541
549
2.150397
AGTGCTCGTTAAAGCTTCGT
57.850
45.000
0.00
0.00
42.94
3.85
553
561
1.268285
CGGATGACTCACTAGTGCTCG
60.268
57.143
18.45
10.95
35.56
5.03
602
610
1.400494
GGGATTCGTATTTGCAACGCT
59.600
47.619
0.00
0.00
40.12
5.07
635
643
3.692257
TTTTCTCTGAAGAGGCCTGAG
57.308
47.619
12.00
10.82
42.30
3.35
636
644
4.647564
ATTTTTCTCTGAAGAGGCCTGA
57.352
40.909
12.00
0.00
42.30
3.86
637
645
7.121759
TGAATTATTTTTCTCTGAAGAGGCCTG
59.878
37.037
12.00
0.00
42.30
4.85
638
646
7.177878
TGAATTATTTTTCTCTGAAGAGGCCT
58.822
34.615
3.86
3.86
42.30
5.19
639
647
7.396540
TGAATTATTTTTCTCTGAAGAGGCC
57.603
36.000
7.47
0.00
42.30
5.19
648
656
9.348476
GGCCTCTCTATTGAATTATTTTTCTCT
57.652
33.333
0.00
0.00
0.00
3.10
649
657
9.348476
AGGCCTCTCTATTGAATTATTTTTCTC
57.652
33.333
0.00
0.00
0.00
2.87
650
658
9.348476
GAGGCCTCTCTATTGAATTATTTTTCT
57.652
33.333
26.25
0.00
37.07
2.52
651
659
8.286097
CGAGGCCTCTCTATTGAATTATTTTTC
58.714
37.037
29.73
0.00
37.86
2.29
652
660
7.993183
TCGAGGCCTCTCTATTGAATTATTTTT
59.007
33.333
29.73
0.00
37.86
1.94
697
790
8.537858
GGTGGGATAATACTATCTCGGTATTTT
58.462
37.037
4.76
0.00
37.79
1.82
705
798
8.602472
ATCTGAAGGTGGGATAATACTATCTC
57.398
38.462
0.00
0.00
35.78
2.75
719
812
7.921786
TTTTCACAGTAATATCTGAAGGTGG
57.078
36.000
0.65
0.00
38.63
4.61
733
826
7.255451
GGTGGTTTTGAGATGATTTTCACAGTA
60.255
37.037
0.00
0.00
0.00
2.74
736
829
5.362143
TGGTGGTTTTGAGATGATTTTCACA
59.638
36.000
0.00
0.00
0.00
3.58
923
1024
3.568538
GTGTCTGTGTTGATTGATTGGC
58.431
45.455
0.00
0.00
0.00
4.52
934
1036
2.510464
TGCGTGCGTGTCTGTGTT
60.510
55.556
0.00
0.00
0.00
3.32
935
1037
3.261951
GTGCGTGCGTGTCTGTGT
61.262
61.111
0.00
0.00
0.00
3.72
969
1075
0.398318
GATAGTGGAGTGGGGGATGC
59.602
60.000
0.00
0.00
0.00
3.91
986
1092
0.607620
CGCCATGGTTTTTGGTGGAT
59.392
50.000
14.67
0.00
40.36
3.41
987
1093
2.045280
CGCCATGGTTTTTGGTGGA
58.955
52.632
14.67
0.00
40.36
4.02
1015
1122
1.743321
GCGAGTAGGAGGAGCATGCT
61.743
60.000
22.92
22.92
42.52
3.79
1124
1231
2.830704
GATCTCGAACCCGTTGGCGT
62.831
60.000
0.00
0.00
37.05
5.68
1275
1382
3.191539
GGCACTACTGCTGCGAGC
61.192
66.667
0.00
1.70
43.66
5.03
1276
1383
1.808799
CTGGCACTACTGCTGCGAG
60.809
63.158
0.00
0.00
43.66
5.03
1277
1384
2.262603
CTGGCACTACTGCTGCGA
59.737
61.111
0.00
0.00
43.66
5.10
1278
1385
2.047844
ACTGGCACTACTGCTGCG
60.048
61.111
0.00
0.00
43.66
5.18
1361
1475
1.340991
GCCTGGCCCATAGAAACAAGA
60.341
52.381
7.66
0.00
0.00
3.02
1369
1483
1.753073
CTTGAAAAGCCTGGCCCATAG
59.247
52.381
16.57
1.93
36.98
2.23
1743
1857
2.049433
CCGCTGAACTCGAACGGT
60.049
61.111
0.00
0.00
39.05
4.83
1831
1945
3.497640
CACTGATTAATCTAGCCAGCAGC
59.502
47.826
16.24
0.00
44.25
5.25
1832
1946
4.953667
TCACTGATTAATCTAGCCAGCAG
58.046
43.478
16.24
6.08
0.00
4.24
1833
1947
5.104776
AGTTCACTGATTAATCTAGCCAGCA
60.105
40.000
16.24
0.00
0.00
4.41
1834
1948
5.363939
AGTTCACTGATTAATCTAGCCAGC
58.636
41.667
16.24
5.24
0.00
4.85
1835
1949
5.689514
CGAGTTCACTGATTAATCTAGCCAG
59.310
44.000
16.24
8.07
0.00
4.85
1863
1994
7.716768
AGCTTAAAAGACAAGACACTCTTAC
57.283
36.000
0.00
0.00
33.78
2.34
1889
2022
5.475909
ACCATTATTCGTCGGCTTAGATAGA
59.524
40.000
0.00
0.00
0.00
1.98
1894
2027
3.673809
GCTACCATTATTCGTCGGCTTAG
59.326
47.826
0.00
0.00
0.00
2.18
1917
2050
6.109359
AGTAGTTGGCTTCAGCAGTTTATAG
58.891
40.000
0.30
0.00
44.36
1.31
1929
2065
4.705991
AGTACACTAGGAGTAGTTGGCTTC
59.294
45.833
0.00
0.00
37.40
3.86
1934
2070
6.145696
GCAAAACAGTACACTAGGAGTAGTTG
59.854
42.308
0.00
1.93
37.40
3.16
1937
2073
4.857588
CGCAAAACAGTACACTAGGAGTAG
59.142
45.833
0.00
0.00
0.00
2.57
1940
2076
2.412089
GCGCAAAACAGTACACTAGGAG
59.588
50.000
0.30
0.00
0.00
3.69
1942
2078
2.157668
CAGCGCAAAACAGTACACTAGG
59.842
50.000
11.47
0.00
0.00
3.02
1943
2079
2.800544
ACAGCGCAAAACAGTACACTAG
59.199
45.455
11.47
0.00
0.00
2.57
1944
2080
2.828877
ACAGCGCAAAACAGTACACTA
58.171
42.857
11.47
0.00
0.00
2.74
1945
2081
1.663695
ACAGCGCAAAACAGTACACT
58.336
45.000
11.47
0.00
0.00
3.55
1946
2082
3.479006
CATACAGCGCAAAACAGTACAC
58.521
45.455
11.47
0.00
0.00
2.90
1947
2083
2.482336
CCATACAGCGCAAAACAGTACA
59.518
45.455
11.47
0.00
0.00
2.90
1948
2084
2.739913
TCCATACAGCGCAAAACAGTAC
59.260
45.455
11.47
0.00
0.00
2.73
1949
2085
2.739913
GTCCATACAGCGCAAAACAGTA
59.260
45.455
11.47
2.70
0.00
2.74
1971
2107
0.740737
GGGCACTTTATTGCTCGCAT
59.259
50.000
0.00
0.00
42.56
4.73
1990
2126
2.671130
ACAGTTTGTTGCACCAAAGG
57.329
45.000
9.94
8.06
35.13
3.11
2061
2203
9.326413
GGGGATATTTATAGGAAACGTATCATG
57.674
37.037
0.00
0.00
0.00
3.07
2088
2230
3.387091
ACCGCCGGTGTGATAGCA
61.387
61.111
8.62
0.00
32.98
3.49
2119
2261
5.451798
GCAGAACAGTCCATGGAAAGAAAAA
60.452
40.000
18.20
0.00
0.00
1.94
2120
2262
4.037923
GCAGAACAGTCCATGGAAAGAAAA
59.962
41.667
18.20
0.00
0.00
2.29
2121
2263
3.569701
GCAGAACAGTCCATGGAAAGAAA
59.430
43.478
18.20
0.00
0.00
2.52
2122
2264
3.149196
GCAGAACAGTCCATGGAAAGAA
58.851
45.455
18.20
0.00
0.00
2.52
2123
2265
2.373169
AGCAGAACAGTCCATGGAAAGA
59.627
45.455
18.20
0.00
0.00
2.52
2124
2266
2.486982
CAGCAGAACAGTCCATGGAAAG
59.513
50.000
18.20
14.50
0.00
2.62
2125
2267
2.507484
CAGCAGAACAGTCCATGGAAA
58.493
47.619
18.20
0.00
0.00
3.13
2126
2268
1.883638
GCAGCAGAACAGTCCATGGAA
60.884
52.381
18.20
0.00
0.00
3.53
2127
2269
0.321919
GCAGCAGAACAGTCCATGGA
60.322
55.000
11.44
11.44
0.00
3.41
2128
2270
0.322277
AGCAGCAGAACAGTCCATGG
60.322
55.000
4.97
4.97
0.00
3.66
2129
2271
2.391616
TAGCAGCAGAACAGTCCATG
57.608
50.000
0.00
0.00
0.00
3.66
2130
2272
3.641434
AATAGCAGCAGAACAGTCCAT
57.359
42.857
0.00
0.00
0.00
3.41
2131
2273
3.076621
CAAATAGCAGCAGAACAGTCCA
58.923
45.455
0.00
0.00
0.00
4.02
2132
2274
3.077359
ACAAATAGCAGCAGAACAGTCC
58.923
45.455
0.00
0.00
0.00
3.85
2134
2276
2.738846
CGACAAATAGCAGCAGAACAGT
59.261
45.455
0.00
0.00
0.00
3.55
2135
2277
2.475187
GCGACAAATAGCAGCAGAACAG
60.475
50.000
0.00
0.00
0.00
3.16
2137
2279
1.464608
TGCGACAAATAGCAGCAGAAC
59.535
47.619
0.00
0.00
38.59
3.01
2138
2280
1.807139
TGCGACAAATAGCAGCAGAA
58.193
45.000
0.00
0.00
38.59
3.02
2144
2286
1.733912
CTTCAGCTGCGACAAATAGCA
59.266
47.619
9.47
0.00
39.84
3.49
2145
2287
2.002586
TCTTCAGCTGCGACAAATAGC
58.997
47.619
9.47
0.00
37.71
2.97
2146
2288
4.330894
TGATTCTTCAGCTGCGACAAATAG
59.669
41.667
9.47
0.00
0.00
1.73
2148
2290
3.076621
TGATTCTTCAGCTGCGACAAAT
58.923
40.909
9.47
4.21
0.00
2.32
2149
2291
2.493035
TGATTCTTCAGCTGCGACAAA
58.507
42.857
9.47
0.00
0.00
2.83
2151
2293
2.168326
TTGATTCTTCAGCTGCGACA
57.832
45.000
9.47
0.77
32.27
4.35
2152
2294
2.413371
GGTTTGATTCTTCAGCTGCGAC
60.413
50.000
9.47
0.00
32.27
5.19
2154
2296
1.464687
CGGTTTGATTCTTCAGCTGCG
60.465
52.381
9.47
2.34
32.27
5.18
2155
2297
1.806542
TCGGTTTGATTCTTCAGCTGC
59.193
47.619
9.47
0.00
32.27
5.25
2158
2300
2.160417
CACCTCGGTTTGATTCTTCAGC
59.840
50.000
0.00
0.00
32.27
4.26
2173
2315
0.246635
ACTTGGATTCGGACACCTCG
59.753
55.000
0.00
0.00
0.00
4.63
2178
2320
3.408634
GGAAGAAACTTGGATTCGGACA
58.591
45.455
0.00
0.00
32.04
4.02
2182
2324
3.064207
TGACGGAAGAAACTTGGATTCG
58.936
45.455
0.00
0.00
32.04
3.34
2183
2325
3.120165
GCTGACGGAAGAAACTTGGATTC
60.120
47.826
0.00
0.00
0.00
2.52
2184
2326
2.814336
GCTGACGGAAGAAACTTGGATT
59.186
45.455
0.00
0.00
0.00
3.01
2185
2327
2.039084
AGCTGACGGAAGAAACTTGGAT
59.961
45.455
0.00
0.00
0.00
3.41
2186
2328
1.416401
AGCTGACGGAAGAAACTTGGA
59.584
47.619
0.00
0.00
0.00
3.53
2188
2330
2.483876
TGAGCTGACGGAAGAAACTTG
58.516
47.619
0.00
0.00
0.00
3.16
2189
2331
2.872858
GTTGAGCTGACGGAAGAAACTT
59.127
45.455
0.00
0.00
0.00
2.66
2190
2332
2.484889
GTTGAGCTGACGGAAGAAACT
58.515
47.619
0.00
0.00
0.00
2.66
2204
2346
2.029838
ATCACCGATTCTGGTTGAGC
57.970
50.000
0.00
0.00
41.38
4.26
2234
2376
0.104855
AGAAAGTGCACTGCAGTCGA
59.895
50.000
22.49
2.85
41.77
4.20
2239
2381
1.134128
TCCAAGAGAAAGTGCACTGCA
60.134
47.619
22.49
0.00
35.60
4.41
2240
2382
1.534595
CTCCAAGAGAAAGTGCACTGC
59.465
52.381
22.49
15.81
0.00
4.40
2241
2383
1.534595
GCTCCAAGAGAAAGTGCACTG
59.465
52.381
22.49
6.57
0.00
3.66
2242
2384
1.141657
TGCTCCAAGAGAAAGTGCACT
59.858
47.619
15.25
15.25
0.00
4.40
2243
2385
1.597742
TGCTCCAAGAGAAAGTGCAC
58.402
50.000
9.40
9.40
0.00
4.57
2250
2392
1.339438
GCCAGTGATGCTCCAAGAGAA
60.339
52.381
0.00
0.00
0.00
2.87
2265
2407
2.501723
CACACTCCCTATTGTAGCCAGT
59.498
50.000
0.00
0.00
0.00
4.00
2268
2410
3.490419
CGTACACACTCCCTATTGTAGCC
60.490
52.174
0.00
0.00
0.00
3.93
2269
2411
3.129988
ACGTACACACTCCCTATTGTAGC
59.870
47.826
0.00
0.00
0.00
3.58
2270
2412
4.978083
ACGTACACACTCCCTATTGTAG
57.022
45.455
0.00
0.00
0.00
2.74
2271
2413
4.332543
CGTACGTACACACTCCCTATTGTA
59.667
45.833
24.50
0.00
0.00
2.41
2272
2414
3.127548
CGTACGTACACACTCCCTATTGT
59.872
47.826
24.50
0.00
0.00
2.71
2273
2415
3.127548
ACGTACGTACACACTCCCTATTG
59.872
47.826
21.41
6.68
0.00
1.90
2276
2418
2.076100
CACGTACGTACACACTCCCTA
58.924
52.381
22.34
0.00
0.00
3.53
2286
2428
0.521242
CGGTGGTAGCACGTACGTAC
60.521
60.000
22.34
16.33
31.59
3.67
2287
2429
0.672091
TCGGTGGTAGCACGTACGTA
60.672
55.000
22.34
2.28
31.59
3.57
2288
2430
1.965930
TCGGTGGTAGCACGTACGT
60.966
57.895
16.72
16.72
31.59
3.57
2289
2431
1.512734
GTCGGTGGTAGCACGTACG
60.513
63.158
18.23
15.01
31.59
3.67
2290
2432
1.512734
CGTCGGTGGTAGCACGTAC
60.513
63.158
18.23
16.32
0.00
3.67
2319
2461
5.680229
GGAGTTCGATGTTATGTACGTACTG
59.320
44.000
25.12
6.41
36.77
2.74
2321
2463
4.972440
GGGAGTTCGATGTTATGTACGTAC
59.028
45.833
18.90
18.90
0.00
3.67
2322
2464
4.639755
TGGGAGTTCGATGTTATGTACGTA
59.360
41.667
0.00
0.00
0.00
3.57
2323
2465
3.444742
TGGGAGTTCGATGTTATGTACGT
59.555
43.478
0.00
0.00
0.00
3.57
2324
2466
4.036567
TGGGAGTTCGATGTTATGTACG
57.963
45.455
0.00
0.00
0.00
3.67
2325
2467
3.802685
GCTGGGAGTTCGATGTTATGTAC
59.197
47.826
0.00
0.00
0.00
2.90
2327
2469
2.420129
GGCTGGGAGTTCGATGTTATGT
60.420
50.000
0.00
0.00
0.00
2.29
2328
2470
2.213499
GGCTGGGAGTTCGATGTTATG
58.787
52.381
0.00
0.00
0.00
1.90
2329
2471
1.837439
TGGCTGGGAGTTCGATGTTAT
59.163
47.619
0.00
0.00
0.00
1.89
2330
2472
1.207089
CTGGCTGGGAGTTCGATGTTA
59.793
52.381
0.00
0.00
0.00
2.41
2331
2473
0.036010
CTGGCTGGGAGTTCGATGTT
60.036
55.000
0.00
0.00
0.00
2.71
2332
2474
1.194781
ACTGGCTGGGAGTTCGATGT
61.195
55.000
0.00
0.00
0.00
3.06
2336
2478
1.376037
GGAACTGGCTGGGAGTTCG
60.376
63.158
8.73
0.00
46.98
3.95
2337
2479
0.402121
AAGGAACTGGCTGGGAGTTC
59.598
55.000
6.85
6.85
45.83
3.01
2338
2480
0.402121
GAAGGAACTGGCTGGGAGTT
59.598
55.000
0.00
0.00
40.86
3.01
2340
2482
0.035630
CTGAAGGAACTGGCTGGGAG
60.036
60.000
0.00
0.00
40.86
4.30
2341
2483
2.069776
CTGAAGGAACTGGCTGGGA
58.930
57.895
0.00
0.00
40.86
4.37
2343
2485
2.037136
CGCTGAAGGAACTGGCTGG
61.037
63.158
0.00
0.00
40.86
4.85
2344
2486
0.392193
ATCGCTGAAGGAACTGGCTG
60.392
55.000
0.00
0.00
40.86
4.85
2345
2487
0.107945
GATCGCTGAAGGAACTGGCT
60.108
55.000
0.00
0.00
40.86
4.75
2346
2488
1.424493
CGATCGCTGAAGGAACTGGC
61.424
60.000
0.26
0.00
40.86
4.85
2347
2489
0.807667
CCGATCGCTGAAGGAACTGG
60.808
60.000
10.32
0.00
40.86
4.00
2348
2490
0.108615
ACCGATCGCTGAAGGAACTG
60.109
55.000
10.32
0.00
40.86
3.16
2349
2491
3.467650
CGACCGATCGCTGAAGGAACT
62.468
57.143
10.32
0.00
42.43
3.01
2350
2492
1.140407
CGACCGATCGCTGAAGGAAC
61.140
60.000
10.32
0.00
42.43
3.62
2351
2493
1.138883
CGACCGATCGCTGAAGGAA
59.861
57.895
10.32
0.00
42.43
3.36
2352
2494
2.798689
CGACCGATCGCTGAAGGA
59.201
61.111
10.32
0.00
42.43
3.36
2365
2507
2.200170
AAAAATGAGCTGCCGCGACC
62.200
55.000
8.23
0.00
42.32
4.79
2366
2508
0.794605
GAAAAATGAGCTGCCGCGAC
60.795
55.000
8.23
0.00
42.32
5.19
2367
2509
0.955428
AGAAAAATGAGCTGCCGCGA
60.955
50.000
8.23
0.00
42.32
5.87
2368
2510
0.522076
GAGAAAAATGAGCTGCCGCG
60.522
55.000
0.00
0.00
42.32
6.46
2369
2511
0.807496
AGAGAAAAATGAGCTGCCGC
59.193
50.000
0.00
0.00
0.00
6.53
2394
2536
3.038946
GCATACCGCACGTCTGTTA
57.961
52.632
0.00
0.00
41.79
2.41
2395
2537
3.870606
GCATACCGCACGTCTGTT
58.129
55.556
0.00
0.00
41.79
3.16
2408
2550
2.584064
CTGCCGTGGTCCTGCATA
59.416
61.111
0.00
0.00
33.97
3.14
2496
2644
1.895798
ACTCTTTGAGCCGAGTGATCA
59.104
47.619
0.00
0.00
38.94
2.92
2505
2653
4.800471
CAGTTTGTTTTGACTCTTTGAGCC
59.200
41.667
0.00
0.00
32.04
4.70
2518
2666
2.162809
GACGTGTCACCCAGTTTGTTTT
59.837
45.455
0.00
0.00
0.00
2.43
2765
2922
2.278013
CGGGTAGTCGAAGAGCGC
60.278
66.667
0.00
0.00
36.95
5.92
2776
2933
4.602696
CCGTAGTCGCGCGGGTAG
62.603
72.222
31.69
17.07
43.85
3.18
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.