>input_sequence_68028
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------------------------------------------------------------------ATGGCGCGGCGGAG
CAGCATGCTCCTCCTACTCGCCGCGGCCGCCCTGCTTGCCGTCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCA
TCGAGTGCCCGGCGTACGACGTGGTGGACAACGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCCATGTGGGTGTCC
ACCGCGCCCATCGAGGACATCTCCCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCA
TTGCCAGATCACGCGCAACTTGCTCGCAGCAGTAGT--GCCAGTGAAGCTCTCTTT-----TGGGCTTCACGTGGGCCTA
AACAAATGGGCCTGGGATAACAATAACGGGCTTCTCTTGTTTCTATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAA
CGCCTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCT
CCTTCGTGGTCAGCTTCTACGTGCCGGCGAAGAACCAGGCGGACGCGCCGCCGGCCGAGGGCCTGCACGTGCAGAAGTGG
GCCGGGGCGAGGTACGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCT
CGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCG
TGGCGCAGTACAACTCACCGTTCGAGTTCAGCGGCAGGGTGAACGAGATATGGATGCTCTTCGACACCATGGCCGCGTCT
GACATGTAA-----------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G166900
GATTCAGGCTTGGTCAGCATGCGCCATGCCTGTGGTGCTAAGCCGTAGATGTCGCGGAACCCCATTCCTCTGTCCTTCTT
CGGCTTTGTCAGAAGCTCCCAGCTTAGCCAATGCATCATATTATTTTTCTCCTGCTATGCCCACCAGAACCTACAGATCA
TCATTCCAATATCCTCACAAAGCGTCTTGGTAAGATCAAAGCAGGACATAGCAAACGTTGGGATGACCTGCACACACGCC
TTGATTAGTACATCTTTCCCCATCTTGGACAACAATCTTTCTTGCCAACCCTGAATTTTCTGCTAGATACAATCCTTCAA
ATATTCAAAAACGTGTTTCCTTGCTTTGCCTACATACACTGGAAAGCCTAGATACATACCTCTCCGTCTTTGCCTCAGC-
------TGCAGAGCCTCCAGAACCTCTTGCCTTTGCACTTGGCTGGTGTTCTTACTGAACATGACAGAGTACTTGTCATA
ATTCACAACTTGGCCCGAGCATACCTCATAAAGTGTTAGCATATTCTGCAGTGATGTAGCACTCTCTCACGAAGCTTTAA
CGAGCACTAGTGAGTCATCCGCAAACAATAAATGGTTAAAACTCGGGGCAGCGTTGCAAATACGAATCCCCTTCAAGCTT
GCCTCAGGCCTCTTCAGAGAAAAATAATTCAATAGAGAGGCCTCGAGCGTTCTA--------------------------
-----------------------------------------------------------AATTTTAACAAAAATACCGAG
ATAGTATTATCCCACCTTCAGATATTACTGTGAAAATCATCTCA-AAACCACCAACCGATGCTTCTACTGTCTACGTGTG
CCCCCTCTCCCCCGCTTCCCAGTCTCGATCCTCAAGACCCGAACGATGACGGCCAAGTGCTCGAATCCCGTCGACGTGGA
AGCACGGCCGCCGCGGCC-------ACCCTGAGCCGCAGCCGAGCCGTATTTATCCCACCACCGC-CAATCAATCAACAC
AGACACGCACGCAC----CCGAGCCCCACAATTCGCATCCCCCACTCCACTATCCACC-AAAAACCATGGCGCGGCGGAG
CAGCATGCTCCTCCTACTCGCCGCGGCCGCCCTGCTTGCCGTCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCA
TCGAGTGCCCGGCGTACGACGTGGTGGACAACGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCCATGTGGGTGTCC
ACCGCGCCCATCGAGGACATCTCCCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCA
TTGCCAGATCACGCGCAACTTGCTCGCAGCAGTAGT--GCCAGTGAAGCTCTCTTT-----TGGGCTTCACGTGGGCCTA
AACAAATGGGCCTGGGATAACAATAACGGGCTTCTCTTGTTTCTATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAA
CGCCTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCT
CCTTCGTGGTCAGCTTCTACGTGCCGGCGAAGAACCAGGCGGACGCGCCGCCGGCCGAGGGCCTGCACGTGCAGAAGTGG
GCCGGGGCGAGGTACGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCT
CGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCG
TGGCGCAGTACAACTCACCGTTCGAGTTCAGCGGCAGGGTGAACGAGATATGGATGCTCTTCGACACCATGGCCGCGTCT
GACATGTAACTGTGCAAGCTTGTTGCTGCTGGCTAGATT-----------------AATCAGTGAACTCGTATG--TAAG
AGTGTCTTGTCTTTTAAGCTTTCTATCTAAGCCGACGAATAATGGTAGCC---TATAAACTGCTGAAGCCAACTACTCCT
AGTGTACTGTTTTGCGCTGTATGGACATGCGAGCAATAAAGTGCCCC-T-TTGGTGCAACAAACTGTTTGCCATTTTGGC
GGCCT----GTTGCTTTCTTTCGCGTTTGAGAAGACTGTTCCCATGATACGTTTCCTATAAATATCCCCTGCTATCACAC
CGGCGGTGCTGCTAATTTTTTTTTTCTTTCCATGGACTGTTCTGCTGCTATTTGTCGCAGCTGAAGAATCAAACCGAGGT
GTCCGAATCCAAGTTTCTTCCGTCAGCTCAACCAGAATCGGTGATTCTCACTACATCGACTGCAGTGCACTTTCTCTTGG
AGCATCACTGGCTACAATAGGGAGTGTGTACGTACGTGCTACCACCGACGTGGCGACGTACAGTACGTACATAACATCGA
ACTCCCAGCCAGTTCCTTCAGCGATCGGTCGCGGCAGCTCATTTTTCTCTCCGTATAACAGACGTGCGGTATGCAGGACC
ACGG------CAGGTCGTTCTTCTCTCCGTAACGGACGTGCGGCATGCACGAGGACCCCCCGATCTCCTCTCCCCGCGTG
ACCTGATCACTCGGCTCAAAGAGTCAAAACAAACTGGGTGACACGTCCGCCGGCCCGCCCGCCCGCGCGCTCTGGCTGGG
GCGAGCGCGAGCGGCATGGCGTGGGTGCGCGTGCGGAGGCCCCCGCTGCTGCAGTCCAAGCTGCTCTGCCTCTCGCTGCT
CTACCTCCTCACCACGCTCCCGCTCGCGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGCCTGCCCCTCCA------CC
TCCTCCTCCGCCCCGCCCGCCCCTCCCCTCCGG---CGACGGCGCTCTTCGACTACCCGCGCGACTACGGCGCGCACAAG
TACGCACTCCCC
>chr2D_40
---------------------------------------AAGCCGTAGATGTCGCGGAACCCCATCCCTCCGTCCTTCTT
CGGCCTTGTCAGAAGCTCCCAGCTTAGCCAATGCATCACACTATT----------TTTGCCCACCAGAACCTACAGATCA
TCATTCCAATCTCCTCACAAAGCGTCTTAGTAAGATCAAAACAAGACATAGCAAAGGTTGGGATGGTCTGCGCACACGCC
TTGATTAGTACATCTTTCCCCATCTTGGATAGCAATCTCTCTTGCCAACCCTGAATTTTCTGCCAAATACGATCCTTCAG
ATATTCAAAAACGTGTTTCCTTGCTTGGCCTACATACACTAGGAGGCC----TAGATACCTCTCCGTTTTTGCCTCAGCT
CTAATATGCAAAGCCTCCAGAACCTCATGCCTTTGCACTTGGCTAGTGTTCTTGCTGAACATGACAGAGGACTTGTCATA
ATTCACAACTTGGCCCGAGCATACCTCATATAGTGTTAACATATTCTGCAGTGACGTAGCACTCTCTCGTGAAGCTTTAA
TGAGCACTAGTGAGTCATCTGCAAACAGTAAGTGGTTAAAGCTCGGGGCCGCGTTGCAAATACGAATCCCCTTCAAGCTG
CC------------------------------------------------------------------------------
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>chr6B_40
---------------------------------------AAGCCATATATGTCGTGGAACCCCATTCCTCCATCCTTCTT
CGGCCTTGTCAGTAGTTCCCAACTTAGCCAGTGCATGGTTTT-TTCTTCTCTTGCTTTGCCCACCAAAATCTGCAAATCA
TTATGCCAATCTCCTCACAAAGTGTCTTGGTCAGATCAAAGCAAGACATAGCAAATGTAGGTATGGCCTGTGCACATGCC
TTGATAAGGACATCTTTCCCCATCTTGGACAACAATCGCTCTTGCCACCCCTGAATTTTCTGCCAGATTCTATCTTTCAA
GTATTCAAACACTTTCTTTCTTGCTTGGCCCACATAGACCGGCAATCC----TAGGTACCTCTCTGTCTTGGCCTCCGCC
CGTATGTTCAAAGTTTCCAAAACCTCCCTTCTTTTCACTTGGCTTGTGTTCTTGCTGAACATGACAGAGGACTTGTCATA
ATTCACAACTTGACCCGAGCAAACCTCATACAGTGTTAGTATATTCTGCAGTGATCTAGCACTCTCCCGCGAAGCTTTAA
TGAGCACTAGAGAATCATCCGCAAAAAGTAGGTGACTGAAGCTCGGGGCTCCGCTGCAAATACGGATCCCCTTCA-----
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>chr7A_40
---------------------------------------AAGCCATATATGTCCCGAAATCCCATGCCCCCATCCTTTTT
CGGCTTTGTTAATAGGTCCCAACTTAACCAGTGCATTGTATTGTTTTTCTCTTGCTTGGCCCACCAGAACCTGCAGATCA
TCATACCAATCTCTTCACACAAAGTTTTTGTGAGGTCAAAACAGGACATGGCAAAGGTTGGTATAGCTTGAGCACAAGCT
TTAATTAATACATCCTTTCCCATCTTTGACAGTAATCTTTCCTGCCATCCTTGAATTTTCTGCCATATCCTCTCTTTCAA
ATA-TCAAAGACTTGCTTTCTAGCTTGACCAACATAAACAGGGAGCCC----CAAATACCTTTCTGACTTTGCTTCAGCC
CTGATATGAAGAGTATCCAGAACTTCTCTTTTTTGTGCCTCTCTAGTGTTTTTGCTAAACATGACAGAAGACTTGTAGAA
GTTGACAACTTGCCCCGAACAAACCTCATATAGATGTAACACATTCTGCAATGATGTAGCGCTCTCTCGCGAAGCTTTAA
TGAGCACTAGTGAGTCATCCGCAAACAATAAATGGTTGAAACTAGGGGTTGCATTGCAAATACGAATACCACTT------
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>chr3D_651
AGT-----------------------------------------------------------------------------
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--------------------AAAATAATTCAATAGAGAGGCCTCGAGCGTTCTACTCCCTCCATCCCATAATATAAAAAC
GGTTTTTTTACACTAATATAGTGTCAAAAATGCTCTTATATTATAGGACGGAGGGAGTAAATTTTAACAGAAATACCAAG
ATAGTATTATCACACCTTCAGATATGACAGTGAAAATCATCTCAGAAACCACCAACCGATGCTTCTACTGTCTACGTGTG
TCCCCTCTCCCCCGCTTGCCAGTCTCGATCCTCAAGACCCGAACGATGACGGCCAAGTGCTCGAATCCCGTCGACGTGGA
AGCACGGCCGCCGCGGCC-------ACCCTGAGCCGCGGCCGAGCCGTATTTATCCCACCACCAC-CAATCAATCCCCAG
AGGCACGCACGCAC----CCGAGCCCCACAATTCCCATCCCCCACTCCACTCCCCACCGAAAAACCATGGCGCGGCGGAG
CGGCATGCTCCTCCTACTCGCCGCGGCCGCCCTGCTTGCCCTCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCA
TCGAGTGCCCGGCGTACGACGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCCATGTGGGTGTCC
ACCGCGCCCATCGAGGACATCTCGCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCA
TT-----------------------GCAGCAGTAGTGCGCCAGTGAAGCTCTCTTT-----TGGGCTTCACGTGGGCCTA
AACAAATGGGCCTGGGATAACAGTAACGGGCTTCGCTTGTTTGCATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAA
CGCCTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCT
CCTTCGTGGTCAGCTTCTACGTGCCGGCGAAGAACCAGGCGGACCCGCCGCCGGCCGAGGGCCTGCACGTGCAGAGGTGG
GCCGGGGCGAGGTACGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCT
CGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCG
TGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATCTGGATGCTCTTCGACACCATGGCCGCGTCT
GACATGTAAC-------------------TGGCTAGATC-----------------AATCAGTGAACTCGTATAT----G
AGTGTCTTGTCTTTTAAGCTT-CTATATAACCGGACGAATAATGGTGGTGCCTTATAAACTGCTTAAGCGAAATAGTGA-
-----ACTGTTTTGCGCTGTATGGACTTGCGAGCAATAAAGTGCCTCTT-TTGGTGCAACAAACTGTTTGCCGTTTTGGC
GGCCT----GTTGCTTTCTTTCGCATTTGAGAAGATTGTTCCGATGATACGTTTCCTATAAATATCCCCGGCTATCACAC
CGGCGCTG-------------------------------------------------CAACTGAAGAATCAAACAGAGGA
GTCGAGTCCAG-GTTTCTTCCGTCACCTCAAACAGAAACGGTGATTCTCACTACACCGAC-----TGCACTCTCTCTTGG
AGCATCGCTACA---AACAGGGAGTGTC----TACGTGCTACCATCGACGTACAGTACTAAACATTTTGTGGCGCATGAG
AAACGATAAATAGC-----------------CGGCAGCTCATTTTTCTCTCCGTA--ACAGACGTGCGGCATGCAGGACC
ACGGGCACGGCAGGTCGTTTTTCTCTCCGTAACGGACGTGCGGCATGCACGAGGA-CCCCCGATCTCCGCTCCCCGTGTG
ACCCGATCACTCAGCTCAAAGAGTCGAAACAAACTGGGTGACACGTCCGCG------------CGCGCGCTCTGGCTGGG
GCGAGCGCGAGCGGCATGGCGTGGGTGCGCGTGCGGAGGCCCCCGCTGCTGCAGTCCAAGCTGCTCTGCCTCTCGCTGCT
CTACCTCCTCACCACGCTCCCGCTCGCGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGCCTGCCCCTCCA---CCTCC
TCCTCCTCCGCCCCGCCCGCCCCTCCCCTCCGG---CGACGCCGCTCTTCGAGTACCCGCGCGACTACGGCGTGCACAAG
TACTCACTCCCC
>chr3A_654
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--------------------AATATAATTCAGTACAG-GGTCTCGAGCGTTCTA--------------------------
-----------------------------------------------------------AAATCTCACAGAAATTCCAAG
ATAGTATTATCACACCTTCAGAAATCACAGCGAAAATCATCTCAGAAACCACCAACCGATGCTTCTACTGTCTACGTGTG
TCCCCTCTCCCCCGCTTGCCAGTCTCGATCCTCAAGACTCGAACGATGACGGCCAAGTGCTCGAAT-CCGTCGACGTGGA
AGCACGGCCGCCGCGGCCCGCGGCCACCCTGAGCCGCAGCCGAGCCGTATTTATCCCACCACCACCCAATCAATCGCCAG
AGGCACGCACGCACGCACCCGAGCCCCACAAACCCAATCCCCCACTCCACTCCCCACC-GAGAACCATGGCGCGGCGGAG
CGGCATGCTCCTCCTGCTCGCCGCGGCCGCCCTGCTCGCCGCCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCA
TCGAGTGCCCGGCGTACGACGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCGATGTGGGTCTCC
ACCGCGCCCATCGAGGACATCTCGCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCA
TTGCCA---------------------AGCAGTAGT--GCCACTGACTGAAGCTATCTTCCTGGGCTTGACGTGGGCCTA
AACAAATGGGCCTGAGAGAGCAATAACGGGCTTCGCTTGTTTGTATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAA
CGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCT
CCTTCGTGGTCAGCTTCTACGTGCCGGCCAAGAACCAGGCGGACCCGCCGCCGGCCGAGGGCCTGCGCGTGCAGAGGTGG
GCCGGGGCGAGGTACGCGGCCGTGCGCCGGTTCGGCGGCTTCGTAGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCT
CGAGGCCAGCCTGCAGGGGACCAGGTGGGCCGCGCCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCG
TGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTGAACGAGATATGGATGCTCTTCGACACCATGGCCGCGTCC
GACATGTAAC-------------------TGTGCAAGCTAGCCGCTTGTTAGACTAAACCAGTGAGCTCGTATATATAAG
AGTGTCTTGTCTTTTAAGCTT-CTATGTAAGCCGACGAATAATGGTAGC-------------------------------
------------------GTATAAACTTGCGAGCAATAAAGTGCCTTTTCTTGGTGCAACAAACTGTTTGCCATTTTGGC
GGCCGGCCCGTTGCTTTCGTTCGCATTTGAGAAGATTGTTCCGATGATACGCTTCCTATGAATGTCCCCGGCTATCACAC
TGGCGCTGAGCATGGGGAAGGAGCAGGGCAAGCCGGATCCTTCCTATTTGCTGCT-------------------------
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------------------------------------------------------------GACGTGCGGCATGCAGGACC
ACGG-CACGGCAGGTGGTTTTTTACTCCGTAACGGACGTGCGGCATGCACGAGGACG-CCGGATCGCCTCTTCCCGTGTG
ACCCGATCACTCAGCTCCAAAAGTGGAAACAAACCGGGGGGCACGTACGTACGCCAGCCACTCCGCCGATCCGCCCGG--
----------GCGGCATGGCGTGGGTGCGCGTGCGGAGGCCCGCGCTGCTGCAGTCCAAGCTGCTCTGCCTCTCGCTGCT
CTACCTCCTCACCACGCTCCCGCTCGCGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGCCTGTCCCTCCACCGCCTCC
TCCTCCTCCGCCCCGCCCGCCGCTCCCCTCCGCCGCCGACGCCGCTCTTCGAGTACCCGCGCGGCTACGGCGCGCACAAG
CACGCCCTCCCC
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S---------
---------------------------------------------------S----S-----------------------
----------S--------------------------------------------S---------S-----S--------
---------------------------------------------------------------S------S---------
--------------------------S---------------S-----SSSS--S-------------------------
--------------------------------------------S--------S---------------S----------
------------------------------S-------------------------------------S-----------
S------------------------------------------------S-----------------------------S
S-SSSSSSSSSSSSSSSSSS------------------------------------------------------------
---------------------------------------------------------------------S-------S--
-----------S-------------S--S---------------------------------------------------
S----------------S--------------------------------------------------------------
---------------------------------------------------------------S-----------SS--S
--S-------------------------------S----------------SS---------------------------
-S------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------S--------------------------------------------------------
------SSSSSSSSSSSSSSSSSSS-------------------------------------------------------
----------------------------------S-------S-------------------------------------
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--------------------------------------------S------------------------------S----
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----------------S---------------------------------------------------------------
----------SSSSSSSSSSSSSSSSSSS--------------------------------------------S------
---------------------S----S----------------------S--------------S----S--S--S-SSS
SSSSS---------------------S------------------S----------------------------------
------------------------S----------S------S--------------------------S----------
-----S--SSSS-SSSSSSSSSSSSSSSSSSSSS-SS-SS-SSSSSSS-SS-SS-SS--S--------------S----S
---SSSSS-SSS-------------S-----S-----S-----------------S----SSSSS------S--------
------S--SSSSSS--S---------SSSSS------------S------SSS-SSS--S-SSSSS-SSSSSS---SSS
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------SS------------S----------
-------------------S--------------------------------------------------------S---
---S--------S------------S------------------------SS---S---SSS------------------
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-----------------------------------------S----------S---------------------------
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>forward_645
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-----------------------------------------------------------------ATCCCCTTCAAGCTT
GCCTC---------------------------------------------------------------------------
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>reverse_2482
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-CTCCCAGCCAGTTCCTTCAG-----------------------------------------------------------
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