Multiple sequence alignment - TraesCS3B01G164000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G164000 | chr3B | 100.000 | 3727 | 0 | 0 | 1 | 3727 | 161637618 | 161633892 | 0.000000e+00 | 6883 |
1 | TraesCS3B01G164000 | chr3D | 92.420 | 2810 | 109 | 44 | 766 | 3485 | 110397202 | 110394407 | 0.000000e+00 | 3914 |
2 | TraesCS3B01G164000 | chr3D | 94.500 | 600 | 15 | 4 | 4 | 603 | 110397854 | 110397273 | 0.000000e+00 | 909 |
3 | TraesCS3B01G164000 | chr3D | 97.927 | 193 | 4 | 0 | 3478 | 3670 | 110394342 | 110394150 | 5.960000e-88 | 335 |
4 | TraesCS3B01G164000 | chr3A | 88.050 | 2728 | 206 | 63 | 888 | 3558 | 119693995 | 119696659 | 0.000000e+00 | 3121 |
5 | TraesCS3B01G164000 | chr3A | 93.729 | 590 | 29 | 4 | 1 | 590 | 119693020 | 119693601 | 0.000000e+00 | 878 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G164000 | chr3B | 161633892 | 161637618 | 3726 | True | 6883.000000 | 6883 | 100.0000 | 1 | 3727 | 1 | chr3B.!!$R1 | 3726 |
1 | TraesCS3B01G164000 | chr3D | 110394150 | 110397854 | 3704 | True | 1719.333333 | 3914 | 94.9490 | 4 | 3670 | 3 | chr3D.!!$R1 | 3666 |
2 | TraesCS3B01G164000 | chr3A | 119693020 | 119696659 | 3639 | False | 1999.500000 | 3121 | 90.8895 | 1 | 3558 | 2 | chr3A.!!$F1 | 3557 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
633 | 634 | 0.383949 | TTTGCGGGTGAAGCTGAAAC | 59.616 | 50.0 | 0.0 | 0.0 | 35.28 | 2.78 | F |
985 | 1139 | 0.875059 | CACCTCCAAAGCTCGAAACC | 59.125 | 55.0 | 0.0 | 0.0 | 0.00 | 3.27 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1566 | 1726 | 0.036388 | TGTCCCAAGCAAGGTCGATC | 60.036 | 55.0 | 0.00 | 0.00 | 0.0 | 3.69 | R |
2822 | 3015 | 0.453390 | GATGTAAGCAGCTTGGTGGC | 59.547 | 55.0 | 18.54 | 3.61 | 0.0 | 5.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 3.713764 | AGCCCTATGTGCAGTCTTTAGAT | 59.286 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
38 | 39 | 4.061596 | GCCCTATGTGCAGTCTTTAGATC | 58.938 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
64 | 65 | 8.840321 | CGATAGAAATCTTATGGTCCAAAATGT | 58.160 | 33.333 | 0.00 | 0.00 | 39.76 | 2.71 |
82 | 83 | 4.819105 | ATGTTGAACCTAACATCTCCGA | 57.181 | 40.909 | 0.00 | 0.00 | 45.49 | 4.55 |
91 | 92 | 6.555463 | ACCTAACATCTCCGATTTCCTTAA | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
188 | 189 | 1.196581 | CGACACGATTCAATGTTGCCA | 59.803 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
222 | 223 | 2.483188 | GGTCATGTAGGGAAGCCTAACG | 60.483 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
250 | 251 | 1.029408 | TGCTGTCCGTGTTGCTGTTT | 61.029 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
266 | 267 | 3.317993 | GCTGTTTGGTCTTTTTAGCCTCA | 59.682 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
267 | 268 | 4.202111 | GCTGTTTGGTCTTTTTAGCCTCAA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
268 | 269 | 5.681179 | GCTGTTTGGTCTTTTTAGCCTCAAA | 60.681 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
454 | 455 | 3.073228 | CAGGAACCTGGAGACCTCA | 57.927 | 57.895 | 12.54 | 0.00 | 40.17 | 3.86 |
539 | 540 | 8.649973 | ACTAGCTAGTCTGTAATTTATGTTGC | 57.350 | 34.615 | 20.95 | 0.00 | 0.00 | 4.17 |
598 | 599 | 3.071602 | TCTGGTTGCTCTAAGCTGAAACT | 59.928 | 43.478 | 0.11 | 0.00 | 42.97 | 2.66 |
599 | 600 | 3.817647 | CTGGTTGCTCTAAGCTGAAACTT | 59.182 | 43.478 | 0.11 | 0.00 | 42.97 | 2.66 |
600 | 601 | 4.207165 | TGGTTGCTCTAAGCTGAAACTTT | 58.793 | 39.130 | 0.11 | 0.00 | 42.97 | 2.66 |
601 | 602 | 4.644685 | TGGTTGCTCTAAGCTGAAACTTTT | 59.355 | 37.500 | 0.11 | 0.00 | 42.97 | 2.27 |
602 | 603 | 5.127031 | TGGTTGCTCTAAGCTGAAACTTTTT | 59.873 | 36.000 | 0.11 | 0.00 | 42.97 | 1.94 |
630 | 631 | 2.800516 | TTTTTGCGGGTGAAGCTGA | 58.199 | 47.368 | 0.00 | 0.00 | 35.28 | 4.26 |
631 | 632 | 1.107114 | TTTTTGCGGGTGAAGCTGAA | 58.893 | 45.000 | 0.00 | 0.00 | 35.28 | 3.02 |
632 | 633 | 1.107114 | TTTTGCGGGTGAAGCTGAAA | 58.893 | 45.000 | 0.00 | 0.00 | 35.28 | 2.69 |
633 | 634 | 0.383949 | TTTGCGGGTGAAGCTGAAAC | 59.616 | 50.000 | 0.00 | 0.00 | 35.28 | 2.78 |
692 | 724 | 3.483558 | CAGTCGTTTTGCTTTTCTGAAGC | 59.516 | 43.478 | 3.91 | 3.91 | 43.29 | 3.86 |
696 | 728 | 3.975035 | CGTTTTGCTTTTCTGAAGCCTAC | 59.025 | 43.478 | 8.15 | 3.52 | 42.36 | 3.18 |
699 | 731 | 2.143122 | TGCTTTTCTGAAGCCTACACG | 58.857 | 47.619 | 8.15 | 0.00 | 42.36 | 4.49 |
718 | 759 | 3.384668 | ACGTCAGTGAACAAGTGATCTG | 58.615 | 45.455 | 0.00 | 0.00 | 40.39 | 2.90 |
724 | 765 | 6.144724 | GTCAGTGAACAAGTGATCTGAGTAAC | 59.855 | 42.308 | 0.00 | 0.00 | 40.39 | 2.50 |
733 | 774 | 6.426646 | AGTGATCTGAGTAACTGGTTCTTT | 57.573 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
734 | 775 | 7.540474 | AGTGATCTGAGTAACTGGTTCTTTA | 57.460 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
735 | 776 | 7.379750 | AGTGATCTGAGTAACTGGTTCTTTAC | 58.620 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
737 | 778 | 7.329717 | GTGATCTGAGTAACTGGTTCTTTACTG | 59.670 | 40.741 | 0.00 | 0.00 | 38.40 | 2.74 |
739 | 780 | 7.120923 | TCTGAGTAACTGGTTCTTTACTGTT | 57.879 | 36.000 | 0.00 | 0.00 | 38.40 | 3.16 |
740 | 781 | 6.984474 | TCTGAGTAACTGGTTCTTTACTGTTG | 59.016 | 38.462 | 0.00 | 0.00 | 38.40 | 3.33 |
741 | 782 | 6.053005 | TGAGTAACTGGTTCTTTACTGTTGG | 58.947 | 40.000 | 0.00 | 0.00 | 38.40 | 3.77 |
759 | 824 | 1.000506 | TGGCTCTCAACAGTAACCGTC | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
760 | 825 | 1.272769 | GGCTCTCAACAGTAACCGTCT | 59.727 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
807 | 887 | 3.181424 | TGTCTCCCCACAATTCCAATTGA | 60.181 | 43.478 | 17.12 | 0.00 | 46.72 | 2.57 |
810 | 890 | 4.711355 | TCTCCCCACAATTCCAATTGATTC | 59.289 | 41.667 | 17.12 | 0.00 | 46.72 | 2.52 |
831 | 946 | 5.794687 | TCACTTTATGCGGTGAATAAGTG | 57.205 | 39.130 | 0.00 | 0.00 | 39.16 | 3.16 |
846 | 961 | 0.960364 | AAGTGGTGCTATGCAACCCG | 60.960 | 55.000 | 5.09 | 0.00 | 46.96 | 5.28 |
861 | 979 | 3.933955 | GCAACCCGGTTTTAGTTTGTTTT | 59.066 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
874 | 992 | 7.707774 | TTAGTTTGTTTTCCTGCAAAATAGC | 57.292 | 32.000 | 0.00 | 0.00 | 36.79 | 2.97 |
877 | 995 | 2.968574 | TGTTTTCCTGCAAAATAGCCCA | 59.031 | 40.909 | 0.00 | 0.00 | 36.35 | 5.36 |
881 | 999 | 2.446435 | TCCTGCAAAATAGCCCAACTC | 58.554 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
884 | 1002 | 1.539388 | TGCAAAATAGCCCAACTCACG | 59.461 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
886 | 1004 | 2.432444 | CAAAATAGCCCAACTCACGGA | 58.568 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
893 | 1011 | 1.293498 | CCAACTCACGGAGGACCTG | 59.707 | 63.158 | 0.00 | 0.00 | 33.35 | 4.00 |
903 | 1021 | 1.761174 | GAGGACCTGGCCTTTGACA | 59.239 | 57.895 | 3.32 | 0.00 | 38.73 | 3.58 |
915 | 1033 | 2.867647 | GCCTTTGACATGGCCTTTGTTC | 60.868 | 50.000 | 3.32 | 3.52 | 43.11 | 3.18 |
916 | 1034 | 2.364970 | CCTTTGACATGGCCTTTGTTCA | 59.635 | 45.455 | 3.32 | 5.97 | 0.00 | 3.18 |
920 | 1038 | 2.170166 | GACATGGCCTTTGTTCATCCA | 58.830 | 47.619 | 3.32 | 0.00 | 0.00 | 3.41 |
921 | 1039 | 2.762327 | GACATGGCCTTTGTTCATCCAT | 59.238 | 45.455 | 3.32 | 0.00 | 37.99 | 3.41 |
923 | 1041 | 2.905415 | TGGCCTTTGTTCATCCATCT | 57.095 | 45.000 | 3.32 | 0.00 | 0.00 | 2.90 |
924 | 1042 | 2.726821 | TGGCCTTTGTTCATCCATCTC | 58.273 | 47.619 | 3.32 | 0.00 | 0.00 | 2.75 |
925 | 1043 | 2.041485 | TGGCCTTTGTTCATCCATCTCA | 59.959 | 45.455 | 3.32 | 0.00 | 0.00 | 3.27 |
930 | 1048 | 6.294397 | GGCCTTTGTTCATCCATCTCATTATC | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 1.75 |
956 | 1108 | 2.030958 | GCCGTAAACCTCCCACACG | 61.031 | 63.158 | 0.00 | 0.00 | 0.00 | 4.49 |
957 | 1109 | 2.030958 | CCGTAAACCTCCCACACGC | 61.031 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
958 | 1110 | 2.030958 | CGTAAACCTCCCACACGCC | 61.031 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
959 | 1111 | 1.071814 | GTAAACCTCCCACACGCCA | 59.928 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
960 | 1112 | 1.071814 | TAAACCTCCCACACGCCAC | 59.928 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
961 | 1113 | 1.697082 | TAAACCTCCCACACGCCACA | 61.697 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
962 | 1114 | 2.559922 | AAACCTCCCACACGCCACAA | 62.560 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
963 | 1115 | 2.978010 | CCTCCCACACGCCACAAC | 60.978 | 66.667 | 0.00 | 0.00 | 0.00 | 3.32 |
964 | 1116 | 2.203139 | CTCCCACACGCCACAACA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 3.33 |
965 | 1117 | 2.515057 | TCCCACACGCCACAACAC | 60.515 | 61.111 | 0.00 | 0.00 | 0.00 | 3.32 |
985 | 1139 | 0.875059 | CACCTCCAAAGCTCGAAACC | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1515 | 1675 | 2.994699 | CACAAGGCGATGGGGGTA | 59.005 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 |
1551 | 1711 | 2.360350 | CTCCACAACCTGGCGCAT | 60.360 | 61.111 | 10.83 | 0.00 | 40.39 | 4.73 |
1584 | 1744 | 1.084370 | CGATCGACCTTGCTTGGGAC | 61.084 | 60.000 | 10.26 | 0.00 | 0.00 | 4.46 |
1712 | 1881 | 1.303155 | AGCTTGGCTTCAGGTGAGC | 60.303 | 57.895 | 0.00 | 0.00 | 33.89 | 4.26 |
1713 | 1882 | 1.601759 | GCTTGGCTTCAGGTGAGCA | 60.602 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
1717 | 1886 | 2.039405 | GGCTTCAGGTGAGCAGCAG | 61.039 | 63.158 | 6.11 | 0.00 | 31.35 | 4.24 |
1719 | 1888 | 1.020333 | GCTTCAGGTGAGCAGCAGAG | 61.020 | 60.000 | 0.00 | 0.00 | 30.43 | 3.35 |
1777 | 1946 | 7.201741 | CGAAATCTCTGTCCACTGATAGTTCTA | 60.202 | 40.741 | 9.08 | 0.00 | 32.04 | 2.10 |
1986 | 2170 | 5.117584 | CCAGATCATCTTCCTTCTCTGTTG | 58.882 | 45.833 | 0.00 | 0.00 | 0.00 | 3.33 |
2148 | 2335 | 2.825836 | GGCCTTGATGCTGGACCG | 60.826 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
2315 | 2502 | 3.119814 | GCTGCTTTTAGAGGTTAGGTTGC | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
2507 | 2697 | 6.610741 | AAACTGTGACTGAATCTTGAAGTC | 57.389 | 37.500 | 0.00 | 0.00 | 40.61 | 3.01 |
2512 | 2702 | 3.742882 | TGACTGAATCTTGAAGTCTTGCG | 59.257 | 43.478 | 0.00 | 0.00 | 40.79 | 4.85 |
2562 | 2755 | 8.680903 | GTTGATGTTTTTCAGGTATGATGAGAT | 58.319 | 33.333 | 0.00 | 0.00 | 34.73 | 2.75 |
2713 | 2906 | 6.550938 | TGAGATGGAGAAAGAGAATGCTAA | 57.449 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
2822 | 3015 | 3.919216 | TGGTTTATTTTGATGCCAACCG | 58.081 | 40.909 | 0.00 | 0.00 | 37.14 | 4.44 |
2879 | 3072 | 2.067365 | GGTTGGTCACCTTGTCCTTT | 57.933 | 50.000 | 0.00 | 0.00 | 43.29 | 3.11 |
2881 | 3074 | 1.067060 | GTTGGTCACCTTGTCCTTTGC | 59.933 | 52.381 | 0.00 | 0.00 | 0.00 | 3.68 |
3019 | 3241 | 6.363357 | GTGCACTTTGAATGATTGTAGGAAAC | 59.637 | 38.462 | 10.32 | 0.00 | 0.00 | 2.78 |
3121 | 3343 | 5.509670 | GCACAAAGTTTCCTTAGCCTCAAAT | 60.510 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3196 | 3423 | 3.960755 | GCCCCATCCTAGTTATTTTGCTT | 59.039 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
3197 | 3424 | 4.038042 | GCCCCATCCTAGTTATTTTGCTTC | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
3198 | 3425 | 5.200483 | CCCCATCCTAGTTATTTTGCTTCA | 58.800 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3199 | 3426 | 5.067805 | CCCCATCCTAGTTATTTTGCTTCAC | 59.932 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3200 | 3427 | 5.652014 | CCCATCCTAGTTATTTTGCTTCACA | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3201 | 3428 | 6.152661 | CCCATCCTAGTTATTTTGCTTCACAA | 59.847 | 38.462 | 0.00 | 0.00 | 36.13 | 3.33 |
3202 | 3429 | 7.253422 | CCATCCTAGTTATTTTGCTTCACAAG | 58.747 | 38.462 | 0.00 | 0.00 | 40.06 | 3.16 |
3372 | 3601 | 5.587043 | TCAAACGTCAAGGACAAAATGTACT | 59.413 | 36.000 | 0.00 | 0.00 | 45.16 | 2.73 |
3562 | 3872 | 5.972107 | GCATTAGCTCAATACCATCCAAT | 57.028 | 39.130 | 0.00 | 0.00 | 37.91 | 3.16 |
3570 | 3880 | 5.239525 | GCTCAATACCATCCAATGTAAGGAC | 59.760 | 44.000 | 0.00 | 0.00 | 38.13 | 3.85 |
3674 | 3984 | 2.317371 | TGCCCCTTAAAGCAAATCCA | 57.683 | 45.000 | 0.00 | 0.00 | 35.69 | 3.41 |
3675 | 3985 | 2.178580 | TGCCCCTTAAAGCAAATCCAG | 58.821 | 47.619 | 0.00 | 0.00 | 35.69 | 3.86 |
3676 | 3986 | 2.179427 | GCCCCTTAAAGCAAATCCAGT | 58.821 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
3677 | 3987 | 2.567169 | GCCCCTTAAAGCAAATCCAGTT | 59.433 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3678 | 3988 | 3.007940 | GCCCCTTAAAGCAAATCCAGTTT | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
3679 | 3989 | 4.504864 | GCCCCTTAAAGCAAATCCAGTTTT | 60.505 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3680 | 3990 | 4.996758 | CCCCTTAAAGCAAATCCAGTTTTG | 59.003 | 41.667 | 0.00 | 0.00 | 39.16 | 2.44 |
3681 | 3991 | 5.454613 | CCCCTTAAAGCAAATCCAGTTTTGT | 60.455 | 40.000 | 3.80 | 0.00 | 38.55 | 2.83 |
3682 | 3992 | 6.054941 | CCCTTAAAGCAAATCCAGTTTTGTT | 58.945 | 36.000 | 3.80 | 0.00 | 38.55 | 2.83 |
3683 | 3993 | 6.018016 | CCCTTAAAGCAAATCCAGTTTTGTTG | 60.018 | 38.462 | 3.80 | 0.00 | 38.55 | 3.33 |
3684 | 3994 | 6.538381 | CCTTAAAGCAAATCCAGTTTTGTTGT | 59.462 | 34.615 | 3.80 | 0.00 | 38.55 | 3.32 |
3685 | 3995 | 7.065683 | CCTTAAAGCAAATCCAGTTTTGTTGTT | 59.934 | 33.333 | 3.80 | 0.13 | 38.55 | 2.83 |
3686 | 3996 | 6.816134 | AAAGCAAATCCAGTTTTGTTGTTT | 57.184 | 29.167 | 3.80 | 0.00 | 38.55 | 2.83 |
3687 | 3997 | 6.421377 | AAGCAAATCCAGTTTTGTTGTTTC | 57.579 | 33.333 | 3.80 | 0.00 | 38.55 | 2.78 |
3688 | 3998 | 4.875536 | AGCAAATCCAGTTTTGTTGTTTCC | 59.124 | 37.500 | 3.80 | 0.00 | 38.55 | 3.13 |
3689 | 3999 | 4.260172 | GCAAATCCAGTTTTGTTGTTTCCG | 60.260 | 41.667 | 3.80 | 0.00 | 38.55 | 4.30 |
3690 | 4000 | 4.729227 | AATCCAGTTTTGTTGTTTCCGT | 57.271 | 36.364 | 0.00 | 0.00 | 0.00 | 4.69 |
3691 | 4001 | 3.495670 | TCCAGTTTTGTTGTTTCCGTG | 57.504 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
3692 | 4002 | 2.820787 | TCCAGTTTTGTTGTTTCCGTGT | 59.179 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
3693 | 4003 | 3.119779 | TCCAGTTTTGTTGTTTCCGTGTC | 60.120 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3694 | 4004 | 3.366476 | CCAGTTTTGTTGTTTCCGTGTCA | 60.366 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
3695 | 4005 | 3.606346 | CAGTTTTGTTGTTTCCGTGTCAC | 59.394 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3696 | 4006 | 2.529136 | TTTGTTGTTTCCGTGTCACG | 57.471 | 45.000 | 18.54 | 18.54 | 42.11 | 4.35 |
3697 | 4007 | 1.440708 | TTGTTGTTTCCGTGTCACGT | 58.559 | 45.000 | 23.01 | 0.00 | 40.58 | 4.49 |
3698 | 4008 | 2.290531 | TGTTGTTTCCGTGTCACGTA | 57.709 | 45.000 | 23.01 | 5.48 | 40.58 | 3.57 |
3699 | 4009 | 1.925847 | TGTTGTTTCCGTGTCACGTAC | 59.074 | 47.619 | 23.01 | 17.17 | 40.58 | 3.67 |
3700 | 4010 | 1.925847 | GTTGTTTCCGTGTCACGTACA | 59.074 | 47.619 | 23.01 | 19.23 | 40.58 | 2.90 |
3713 | 4023 | 5.165676 | TGTCACGTACACATATGTTTCTCC | 58.834 | 41.667 | 5.37 | 0.00 | 40.48 | 3.71 |
3714 | 4024 | 5.165676 | GTCACGTACACATATGTTTCTCCA | 58.834 | 41.667 | 5.37 | 0.00 | 40.48 | 3.86 |
3715 | 4025 | 5.636121 | GTCACGTACACATATGTTTCTCCAA | 59.364 | 40.000 | 5.37 | 0.00 | 40.48 | 3.53 |
3716 | 4026 | 6.312918 | GTCACGTACACATATGTTTCTCCAAT | 59.687 | 38.462 | 5.37 | 0.00 | 40.48 | 3.16 |
3717 | 4027 | 6.312672 | TCACGTACACATATGTTTCTCCAATG | 59.687 | 38.462 | 5.37 | 0.00 | 40.48 | 2.82 |
3718 | 4028 | 6.312672 | CACGTACACATATGTTTCTCCAATGA | 59.687 | 38.462 | 5.37 | 0.00 | 40.48 | 2.57 |
3719 | 4029 | 6.535150 | ACGTACACATATGTTTCTCCAATGAG | 59.465 | 38.462 | 5.37 | 0.00 | 40.48 | 2.90 |
3720 | 4030 | 6.535150 | CGTACACATATGTTTCTCCAATGAGT | 59.465 | 38.462 | 5.37 | 0.00 | 40.48 | 3.41 |
3721 | 4031 | 7.064609 | CGTACACATATGTTTCTCCAATGAGTT | 59.935 | 37.037 | 5.37 | 0.00 | 40.48 | 3.01 |
3722 | 4032 | 7.149569 | ACACATATGTTTCTCCAATGAGTTG | 57.850 | 36.000 | 5.37 | 0.00 | 36.35 | 3.16 |
3723 | 4033 | 6.942005 | ACACATATGTTTCTCCAATGAGTTGA | 59.058 | 34.615 | 5.37 | 0.00 | 36.35 | 3.18 |
3724 | 4034 | 7.613022 | ACACATATGTTTCTCCAATGAGTTGAT | 59.387 | 33.333 | 5.37 | 0.00 | 36.35 | 2.57 |
3725 | 4035 | 7.913821 | CACATATGTTTCTCCAATGAGTTGATG | 59.086 | 37.037 | 5.37 | 0.00 | 39.75 | 3.07 |
3726 | 4036 | 7.830697 | ACATATGTTTCTCCAATGAGTTGATGA | 59.169 | 33.333 | 1.41 | 0.00 | 39.75 | 2.92 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 7.513856 | TGCACATAGGGCTAGATACATTTTAA | 58.486 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
37 | 38 | 9.056005 | CATTTTGGACCATAAGATTTCTATCGA | 57.944 | 33.333 | 0.00 | 0.00 | 35.85 | 3.59 |
38 | 39 | 8.840321 | ACATTTTGGACCATAAGATTTCTATCG | 58.160 | 33.333 | 0.00 | 0.00 | 35.85 | 2.92 |
64 | 65 | 5.045869 | AGGAAATCGGAGATGTTAGGTTCAA | 60.046 | 40.000 | 0.00 | 0.00 | 45.12 | 2.69 |
82 | 83 | 9.860898 | GTTAAGATCTGCAAACATTAAGGAAAT | 57.139 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
91 | 92 | 5.120830 | GTCTGACGTTAAGATCTGCAAACAT | 59.879 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
188 | 189 | 7.410174 | TCCCTACATGACCAAAATTTACAGAT | 58.590 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
250 | 251 | 6.208599 | CCACTATTTTGAGGCTAAAAAGACCA | 59.791 | 38.462 | 14.82 | 0.86 | 33.67 | 4.02 |
266 | 267 | 3.136443 | TGATCTCCGGCATCCACTATTTT | 59.864 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
267 | 268 | 2.705658 | TGATCTCCGGCATCCACTATTT | 59.294 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
268 | 269 | 2.037772 | GTGATCTCCGGCATCCACTATT | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
454 | 455 | 8.245195 | ACAATTTTACAATCTTACAACAGGGT | 57.755 | 30.769 | 0.00 | 0.00 | 0.00 | 4.34 |
495 | 496 | 8.887036 | AGCTAGTTCCAAAATAAAACAAAAGG | 57.113 | 30.769 | 0.00 | 0.00 | 0.00 | 3.11 |
539 | 540 | 4.929211 | TGAATTATCCATGCTATTCCGACG | 59.071 | 41.667 | 0.00 | 0.00 | 0.00 | 5.12 |
612 | 613 | 1.107114 | TTCAGCTTCACCCGCAAAAA | 58.893 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
613 | 614 | 1.107114 | TTTCAGCTTCACCCGCAAAA | 58.893 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
615 | 616 | 0.749818 | TGTTTCAGCTTCACCCGCAA | 60.750 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
617 | 618 | 0.598065 | AATGTTTCAGCTTCACCCGC | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
618 | 619 | 3.369546 | AAAATGTTTCAGCTTCACCCG | 57.630 | 42.857 | 0.00 | 0.00 | 0.00 | 5.28 |
619 | 620 | 4.280929 | AGGTAAAATGTTTCAGCTTCACCC | 59.719 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
620 | 621 | 5.009610 | TGAGGTAAAATGTTTCAGCTTCACC | 59.990 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
621 | 622 | 6.072112 | TGAGGTAAAATGTTTCAGCTTCAC | 57.928 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
623 | 624 | 7.115378 | CACATTGAGGTAAAATGTTTCAGCTTC | 59.885 | 37.037 | 0.00 | 0.00 | 43.94 | 3.86 |
626 | 627 | 5.634859 | CCACATTGAGGTAAAATGTTTCAGC | 59.365 | 40.000 | 0.00 | 0.00 | 43.94 | 4.26 |
627 | 628 | 6.158598 | CCCACATTGAGGTAAAATGTTTCAG | 58.841 | 40.000 | 0.00 | 0.00 | 43.94 | 3.02 |
629 | 630 | 5.478407 | CCCCACATTGAGGTAAAATGTTTC | 58.522 | 41.667 | 0.00 | 0.00 | 43.94 | 2.78 |
630 | 631 | 4.285775 | CCCCCACATTGAGGTAAAATGTTT | 59.714 | 41.667 | 0.00 | 0.00 | 43.94 | 2.83 |
631 | 632 | 3.837731 | CCCCCACATTGAGGTAAAATGTT | 59.162 | 43.478 | 0.00 | 0.00 | 43.94 | 2.71 |
632 | 633 | 3.440127 | CCCCCACATTGAGGTAAAATGT | 58.560 | 45.455 | 0.00 | 0.00 | 46.57 | 2.71 |
633 | 634 | 2.168313 | GCCCCCACATTGAGGTAAAATG | 59.832 | 50.000 | 0.00 | 0.00 | 40.23 | 2.32 |
692 | 724 | 2.794910 | CACTTGTTCACTGACGTGTAGG | 59.205 | 50.000 | 0.00 | 0.00 | 41.89 | 3.18 |
696 | 728 | 3.183172 | CAGATCACTTGTTCACTGACGTG | 59.817 | 47.826 | 0.00 | 0.00 | 42.59 | 4.49 |
699 | 731 | 4.626042 | ACTCAGATCACTTGTTCACTGAC | 58.374 | 43.478 | 0.00 | 0.00 | 32.31 | 3.51 |
707 | 739 | 5.305644 | AGAACCAGTTACTCAGATCACTTGT | 59.694 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
718 | 759 | 5.049612 | GCCAACAGTAAAGAACCAGTTACTC | 60.050 | 44.000 | 0.00 | 0.00 | 38.25 | 2.59 |
724 | 765 | 3.744660 | AGAGCCAACAGTAAAGAACCAG | 58.255 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
739 | 780 | 1.000506 | GACGGTTACTGTTGAGAGCCA | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
740 | 781 | 1.272769 | AGACGGTTACTGTTGAGAGCC | 59.727 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
741 | 782 | 2.726832 | AGACGGTTACTGTTGAGAGC | 57.273 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
751 | 816 | 5.336055 | CCATGAGATCATCCTAGACGGTTAC | 60.336 | 48.000 | 0.00 | 0.00 | 33.61 | 2.50 |
754 | 819 | 3.161067 | CCATGAGATCATCCTAGACGGT | 58.839 | 50.000 | 0.00 | 0.00 | 33.61 | 4.83 |
810 | 890 | 4.394920 | ACCACTTATTCACCGCATAAAGTG | 59.605 | 41.667 | 6.13 | 6.13 | 35.24 | 3.16 |
831 | 946 | 1.248101 | AAACCGGGTTGCATAGCACC | 61.248 | 55.000 | 14.22 | 0.00 | 38.71 | 5.01 |
843 | 958 | 4.364860 | CAGGAAAACAAACTAAAACCGGG | 58.635 | 43.478 | 6.32 | 0.00 | 0.00 | 5.73 |
846 | 961 | 6.729391 | TTTGCAGGAAAACAAACTAAAACC | 57.271 | 33.333 | 0.00 | 0.00 | 31.09 | 3.27 |
861 | 979 | 2.224992 | TGAGTTGGGCTATTTTGCAGGA | 60.225 | 45.455 | 0.00 | 0.00 | 34.04 | 3.86 |
874 | 992 | 1.913762 | AGGTCCTCCGTGAGTTGGG | 60.914 | 63.158 | 0.00 | 0.00 | 39.05 | 4.12 |
877 | 995 | 2.584391 | GCCAGGTCCTCCGTGAGTT | 61.584 | 63.158 | 0.00 | 0.00 | 39.05 | 3.01 |
881 | 999 | 2.895424 | AAAGGCCAGGTCCTCCGTG | 61.895 | 63.158 | 5.01 | 0.00 | 39.05 | 4.94 |
884 | 1002 | 1.002011 | GTCAAAGGCCAGGTCCTCC | 60.002 | 63.158 | 5.01 | 0.00 | 34.82 | 4.30 |
886 | 1004 | 0.038744 | CATGTCAAAGGCCAGGTCCT | 59.961 | 55.000 | 5.01 | 0.00 | 38.31 | 3.85 |
903 | 1021 | 3.294214 | GAGATGGATGAACAAAGGCCAT | 58.706 | 45.455 | 5.01 | 0.00 | 41.76 | 4.40 |
915 | 1033 | 7.523544 | CGGCTAGGATAGATAATGAGATGGATG | 60.524 | 44.444 | 0.00 | 0.00 | 42.77 | 3.51 |
916 | 1034 | 6.493115 | CGGCTAGGATAGATAATGAGATGGAT | 59.507 | 42.308 | 0.00 | 0.00 | 42.77 | 3.41 |
920 | 1038 | 8.688151 | GTTTACGGCTAGGATAGATAATGAGAT | 58.312 | 37.037 | 0.00 | 0.00 | 42.77 | 2.75 |
921 | 1039 | 7.122353 | GGTTTACGGCTAGGATAGATAATGAGA | 59.878 | 40.741 | 0.00 | 0.00 | 42.77 | 3.27 |
923 | 1041 | 6.952358 | AGGTTTACGGCTAGGATAGATAATGA | 59.048 | 38.462 | 0.00 | 0.00 | 42.77 | 2.57 |
924 | 1042 | 7.171630 | AGGTTTACGGCTAGGATAGATAATG | 57.828 | 40.000 | 0.00 | 0.00 | 42.77 | 1.90 |
925 | 1043 | 6.380560 | GGAGGTTTACGGCTAGGATAGATAAT | 59.619 | 42.308 | 0.00 | 0.00 | 42.77 | 1.28 |
930 | 1048 | 2.561858 | GGGAGGTTTACGGCTAGGATAG | 59.438 | 54.545 | 0.00 | 0.00 | 43.09 | 2.08 |
956 | 1108 | 1.040339 | TTTGGAGGTGGTGTTGTGGC | 61.040 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
957 | 1109 | 1.032014 | CTTTGGAGGTGGTGTTGTGG | 58.968 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
958 | 1110 | 0.385390 | GCTTTGGAGGTGGTGTTGTG | 59.615 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
959 | 1111 | 0.258774 | AGCTTTGGAGGTGGTGTTGT | 59.741 | 50.000 | 0.00 | 0.00 | 31.08 | 3.32 |
960 | 1112 | 0.954452 | GAGCTTTGGAGGTGGTGTTG | 59.046 | 55.000 | 0.00 | 0.00 | 32.79 | 3.33 |
961 | 1113 | 0.535102 | CGAGCTTTGGAGGTGGTGTT | 60.535 | 55.000 | 0.00 | 0.00 | 32.79 | 3.32 |
962 | 1114 | 1.071471 | CGAGCTTTGGAGGTGGTGT | 59.929 | 57.895 | 0.00 | 0.00 | 32.79 | 4.16 |
963 | 1115 | 0.250295 | TTCGAGCTTTGGAGGTGGTG | 60.250 | 55.000 | 0.00 | 0.00 | 32.79 | 4.17 |
964 | 1116 | 0.472471 | TTTCGAGCTTTGGAGGTGGT | 59.528 | 50.000 | 0.00 | 0.00 | 32.79 | 4.16 |
965 | 1117 | 0.875059 | GTTTCGAGCTTTGGAGGTGG | 59.125 | 55.000 | 0.00 | 0.00 | 32.79 | 4.61 |
985 | 1139 | 3.814268 | CATTTGGCCGGTGGAGCG | 61.814 | 66.667 | 1.90 | 0.00 | 0.00 | 5.03 |
1551 | 1711 | 0.867329 | CGATCGCATTGAGCTCGACA | 60.867 | 55.000 | 5.59 | 0.00 | 41.77 | 4.35 |
1566 | 1726 | 0.036388 | TGTCCCAAGCAAGGTCGATC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1701 | 1870 | 0.607112 | TCTCTGCTGCTCACCTGAAG | 59.393 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1712 | 1881 | 1.288350 | CTTCCGCATTCTCTCTGCTG | 58.712 | 55.000 | 0.00 | 0.00 | 37.48 | 4.41 |
1713 | 1882 | 0.901124 | ACTTCCGCATTCTCTCTGCT | 59.099 | 50.000 | 0.00 | 0.00 | 37.48 | 4.24 |
1717 | 1886 | 2.370281 | TCACACTTCCGCATTCTCTC | 57.630 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1719 | 1888 | 5.294306 | TCAATATTCACACTTCCGCATTCTC | 59.706 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1729 | 1898 | 7.087409 | TCGCATCAATTCAATATTCACACTT | 57.913 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1777 | 1946 | 6.014584 | TGACATATGACAAGTAGACAACAGGT | 60.015 | 38.462 | 10.38 | 0.00 | 0.00 | 4.00 |
1812 | 1996 | 9.836864 | TTTACAACAATCTGACATAGCTCATAT | 57.163 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
1859 | 2043 | 3.937706 | GACAGGCATATCACCATATCTGC | 59.062 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
1986 | 2170 | 8.638565 | GTTATGACAATGTATTTTTGACAGTGC | 58.361 | 33.333 | 3.38 | 0.00 | 44.57 | 4.40 |
2085 | 2270 | 9.112725 | TCTAATCATCAACATATTGGTCAAGTG | 57.887 | 33.333 | 0.00 | 0.00 | 36.39 | 3.16 |
2148 | 2335 | 6.655425 | AGCCAATTAACTTTTGGACTAGTCTC | 59.345 | 38.462 | 21.88 | 12.69 | 45.35 | 3.36 |
2256 | 2443 | 3.189080 | CCATCATTTCGCACACTTTCAGA | 59.811 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2265 | 2452 | 2.406616 | ACGGCCCATCATTTCGCAC | 61.407 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
2562 | 2755 | 3.490761 | GCTTGCAACTTCAGGTTTAAGCA | 60.491 | 43.478 | 11.46 | 0.00 | 45.21 | 3.91 |
2688 | 2881 | 6.003859 | AGCATTCTCTTTCTCCATCTCAAT | 57.996 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2713 | 2906 | 6.664816 | TCAGGTGAGATTTTAGCCATTCAAAT | 59.335 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2822 | 3015 | 0.453390 | GATGTAAGCAGCTTGGTGGC | 59.547 | 55.000 | 18.54 | 3.61 | 0.00 | 5.01 |
2879 | 3072 | 8.506196 | AAGGTCCAATAAGTAGAATATAGGCA | 57.494 | 34.615 | 0.00 | 0.00 | 0.00 | 4.75 |
2915 | 3108 | 9.563748 | TCTTTTTCATAGATGTGATCATGCATA | 57.436 | 29.630 | 0.00 | 0.00 | 34.06 | 3.14 |
3019 | 3241 | 6.128007 | ACAACTTGAACACTTAGTGAGGTTTG | 60.128 | 38.462 | 20.07 | 14.56 | 36.96 | 2.93 |
3023 | 3245 | 5.584649 | TCAACAACTTGAACACTTAGTGAGG | 59.415 | 40.000 | 20.07 | 0.00 | 32.63 | 3.86 |
3134 | 3356 | 7.471399 | GCCCAACTTTCCTAATTATGGGTTATG | 60.471 | 40.741 | 16.03 | 0.38 | 46.21 | 1.90 |
3136 | 3358 | 5.894964 | GCCCAACTTTCCTAATTATGGGTTA | 59.105 | 40.000 | 16.03 | 0.00 | 46.21 | 2.85 |
3196 | 3423 | 6.704493 | GTCCTTGTATTAGTTGTGACTTGTGA | 59.296 | 38.462 | 0.00 | 0.00 | 37.33 | 3.58 |
3197 | 3424 | 6.706270 | AGTCCTTGTATTAGTTGTGACTTGTG | 59.294 | 38.462 | 0.00 | 0.00 | 37.33 | 3.33 |
3198 | 3425 | 6.827727 | AGTCCTTGTATTAGTTGTGACTTGT | 58.172 | 36.000 | 0.00 | 0.00 | 37.33 | 3.16 |
3199 | 3426 | 8.873830 | CATAGTCCTTGTATTAGTTGTGACTTG | 58.126 | 37.037 | 0.00 | 0.00 | 37.33 | 3.16 |
3200 | 3427 | 8.041323 | CCATAGTCCTTGTATTAGTTGTGACTT | 58.959 | 37.037 | 0.00 | 0.00 | 37.33 | 3.01 |
3201 | 3428 | 7.399191 | TCCATAGTCCTTGTATTAGTTGTGACT | 59.601 | 37.037 | 0.00 | 0.00 | 39.97 | 3.41 |
3202 | 3429 | 7.491696 | GTCCATAGTCCTTGTATTAGTTGTGAC | 59.508 | 40.741 | 0.00 | 0.00 | 0.00 | 3.67 |
3247 | 3474 | 6.317642 | CCGTCCATTTCATTCAATTGGTAGTA | 59.682 | 38.462 | 5.42 | 0.00 | 36.99 | 1.82 |
3250 | 3477 | 5.257262 | TCCGTCCATTTCATTCAATTGGTA | 58.743 | 37.500 | 5.42 | 0.00 | 36.99 | 3.25 |
3270 | 3497 | 3.470709 | AGTGGCTCAATCAATACATCCG | 58.529 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
3347 | 3576 | 4.668289 | ACATTTTGTCCTTGACGTTTGAC | 58.332 | 39.130 | 0.00 | 0.00 | 34.95 | 3.18 |
3394 | 3623 | 0.446222 | GCGTGTTGTGGAATGCGTAT | 59.554 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3396 | 3625 | 1.719725 | TTGCGTGTTGTGGAATGCGT | 61.720 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
3397 | 3626 | 1.009108 | TTGCGTGTTGTGGAATGCG | 60.009 | 52.632 | 0.00 | 0.00 | 0.00 | 4.73 |
3464 | 3702 | 8.658499 | TTCTTACTTTAGTGAAGACTCAAACC | 57.342 | 34.615 | 0.99 | 0.00 | 38.77 | 3.27 |
3471 | 3709 | 9.387123 | CAAATGCTTTCTTACTTTAGTGAAGAC | 57.613 | 33.333 | 0.99 | 0.00 | 38.77 | 3.01 |
3562 | 3872 | 0.611200 | CCCCACATGACGTCCTTACA | 59.389 | 55.000 | 14.12 | 0.00 | 0.00 | 2.41 |
3570 | 3880 | 2.124983 | CTCAGGCCCCACATGACG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3660 | 3970 | 7.538303 | ACAACAAAACTGGATTTGCTTTAAG | 57.462 | 32.000 | 7.75 | 0.00 | 42.68 | 1.85 |
3670 | 3980 | 3.445805 | ACACGGAAACAACAAAACTGGAT | 59.554 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3671 | 3981 | 2.820787 | ACACGGAAACAACAAAACTGGA | 59.179 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
3672 | 3982 | 3.175929 | GACACGGAAACAACAAAACTGG | 58.824 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3673 | 3983 | 3.606346 | GTGACACGGAAACAACAAAACTG | 59.394 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3674 | 3984 | 3.668491 | CGTGACACGGAAACAACAAAACT | 60.668 | 43.478 | 20.26 | 0.00 | 38.08 | 2.66 |
3675 | 3985 | 2.590712 | CGTGACACGGAAACAACAAAAC | 59.409 | 45.455 | 20.26 | 0.00 | 38.08 | 2.43 |
3676 | 3986 | 2.852748 | CGTGACACGGAAACAACAAAA | 58.147 | 42.857 | 20.26 | 0.00 | 38.08 | 2.44 |
3677 | 3987 | 2.529136 | CGTGACACGGAAACAACAAA | 57.471 | 45.000 | 20.26 | 0.00 | 38.08 | 2.83 |
3690 | 4000 | 5.165676 | GGAGAAACATATGTGTACGTGACA | 58.834 | 41.667 | 9.63 | 0.73 | 37.67 | 3.58 |
3691 | 4001 | 5.165676 | TGGAGAAACATATGTGTACGTGAC | 58.834 | 41.667 | 9.63 | 0.00 | 37.67 | 3.67 |
3692 | 4002 | 5.394224 | TGGAGAAACATATGTGTACGTGA | 57.606 | 39.130 | 9.63 | 0.00 | 37.67 | 4.35 |
3693 | 4003 | 6.312672 | TCATTGGAGAAACATATGTGTACGTG | 59.687 | 38.462 | 9.63 | 2.32 | 37.67 | 4.49 |
3694 | 4004 | 6.403049 | TCATTGGAGAAACATATGTGTACGT | 58.597 | 36.000 | 9.63 | 0.00 | 37.67 | 3.57 |
3695 | 4005 | 6.535150 | ACTCATTGGAGAAACATATGTGTACG | 59.465 | 38.462 | 9.63 | 0.00 | 44.26 | 3.67 |
3696 | 4006 | 7.849804 | ACTCATTGGAGAAACATATGTGTAC | 57.150 | 36.000 | 9.63 | 4.25 | 44.26 | 2.90 |
3697 | 4007 | 8.100164 | TCAACTCATTGGAGAAACATATGTGTA | 58.900 | 33.333 | 9.63 | 0.00 | 44.26 | 2.90 |
3698 | 4008 | 6.942005 | TCAACTCATTGGAGAAACATATGTGT | 59.058 | 34.615 | 9.63 | 2.93 | 44.26 | 3.72 |
3699 | 4009 | 7.381766 | TCAACTCATTGGAGAAACATATGTG | 57.618 | 36.000 | 9.63 | 0.00 | 44.26 | 3.21 |
3700 | 4010 | 7.830697 | TCATCAACTCATTGGAGAAACATATGT | 59.169 | 33.333 | 1.41 | 1.41 | 44.26 | 2.29 |
3701 | 4011 | 8.217131 | TCATCAACTCATTGGAGAAACATATG | 57.783 | 34.615 | 0.00 | 0.00 | 44.26 | 1.78 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.