Multiple sequence alignment - TraesCS3B01G158200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G158200 chr3B 100.000 2633 0 0 1 2633 152963556 152960924 0.000000e+00 4863
1 TraesCS3B01G158200 chr3D 91.716 2680 130 40 1 2633 102189670 102187036 0.000000e+00 3635
2 TraesCS3B01G158200 chr3D 76.891 238 37 15 1092 1317 378529511 378529742 4.600000e-23 119
3 TraesCS3B01G158200 chr3A 87.732 2698 209 61 7 2633 553559972 553562618 0.000000e+00 3037
4 TraesCS3B01G158200 chr5A 91.241 137 11 1 1376 1511 568595239 568595103 4.480000e-43 185
5 TraesCS3B01G158200 chr2D 86.127 173 9 4 1294 1466 643732324 643732167 3.480000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G158200 chr3B 152960924 152963556 2632 True 4863 4863 100.000 1 2633 1 chr3B.!!$R1 2632
1 TraesCS3B01G158200 chr3D 102187036 102189670 2634 True 3635 3635 91.716 1 2633 1 chr3D.!!$R1 2632
2 TraesCS3B01G158200 chr3A 553559972 553562618 2646 False 3037 3037 87.732 7 2633 1 chr3A.!!$F1 2626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 166 0.235665 CACACATCGAGCACACAACC 59.764 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2156 2262 0.81441 CCTCTGGCATAGCAGCACTG 60.814 60.0 0.0 0.0 35.83 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.455847 GCAAATTACTTGAGTTGATATCATTCC 57.544 33.333 6.17 0.00 37.17 3.01
53 62 3.653836 TCCAGTAAAAGCCCTAGAAACCA 59.346 43.478 0.00 0.00 0.00 3.67
92 101 2.119457 GAAACCACAGCAGAAAAAGCG 58.881 47.619 0.00 0.00 37.01 4.68
95 104 1.334869 ACCACAGCAGAAAAAGCGAAG 59.665 47.619 0.00 0.00 37.01 3.79
137 146 0.983378 AGGGTTTCCTCGGAGGATGG 60.983 60.000 26.54 0.70 45.34 3.51
157 166 0.235665 CACACATCGAGCACACAACC 59.764 55.000 0.00 0.00 0.00 3.77
209 218 7.050377 TGTGCTTATTTTTGGGATGAAAACAA 58.950 30.769 0.00 0.00 0.00 2.83
235 244 6.248631 GGCAATAAATTGTACTCACTCGTTC 58.751 40.000 4.71 0.00 39.88 3.95
292 303 4.439289 GGAGCAAAATGATTCCCTTTCGAG 60.439 45.833 0.00 0.00 0.00 4.04
318 329 1.154093 CACGTAGCGAGGCTCGAAA 60.154 57.895 38.56 22.70 43.74 3.46
320 331 1.303799 ACGTAGCGAGGCTCGAAAGA 61.304 55.000 38.56 17.51 43.74 2.52
335 346 6.183360 GGCTCGAAAGACTACTCCTATTGTAA 60.183 42.308 0.00 0.00 35.39 2.41
362 373 6.183360 CCGTCCATATGTTTATGTCGTTTTCA 60.183 38.462 1.24 0.00 34.54 2.69
372 383 7.431376 TGTTTATGTCGTTTTCATACGCAAAAA 59.569 29.630 0.00 0.00 41.16 1.94
378 389 4.967575 CGTTTTCATACGCAAAAAGACACT 59.032 37.500 0.00 0.00 34.45 3.55
379 390 6.018913 TCGTTTTCATACGCAAAAAGACACTA 60.019 34.615 0.00 0.00 41.16 2.74
440 451 1.083489 CACGCCATGTCGTTTGGTAT 58.917 50.000 0.00 0.00 41.21 2.73
455 466 1.539388 TGGTATGAAAAGTTGCCAGCG 59.461 47.619 0.00 0.00 0.00 5.18
458 469 3.119495 GGTATGAAAAGTTGCCAGCGAAT 60.119 43.478 0.00 0.00 0.00 3.34
461 472 2.288152 TGAAAAGTTGCCAGCGAATTCC 60.288 45.455 0.00 0.00 0.00 3.01
462 473 0.240945 AAAGTTGCCAGCGAATTCCG 59.759 50.000 0.00 0.00 42.21 4.30
474 493 5.175856 CCAGCGAATTCCGAAACTCTTATAG 59.824 44.000 0.00 0.00 41.76 1.31
476 495 6.642950 CAGCGAATTCCGAAACTCTTATAGAT 59.357 38.462 0.00 0.00 41.76 1.98
531 556 4.547859 GCAAGGGCACTCGATGAT 57.452 55.556 0.00 0.00 40.72 2.45
532 557 2.785868 GCAAGGGCACTCGATGATT 58.214 52.632 0.00 0.00 40.72 2.57
662 697 2.433868 ACGCATACAACTCAGTCGTT 57.566 45.000 0.00 0.00 0.00 3.85
837 880 3.119173 ACACAATTGCCAACATATTCCGG 60.119 43.478 5.05 0.00 0.00 5.14
877 920 1.141858 GGAAATCCAGATCCCGAAGCT 59.858 52.381 0.00 0.00 35.64 3.74
926 977 1.415672 AAAACCCACGCTCTCCCTCA 61.416 55.000 0.00 0.00 0.00 3.86
928 979 4.135153 CCCACGCTCTCCCTCACG 62.135 72.222 0.00 0.00 0.00 4.35
929 980 4.803426 CCACGCTCTCCCTCACGC 62.803 72.222 0.00 0.00 0.00 5.34
930 981 4.803426 CACGCTCTCCCTCACGCC 62.803 72.222 0.00 0.00 0.00 5.68
963 1014 1.599606 CCGGACTCCCTCACAGTCAG 61.600 65.000 0.00 0.00 41.94 3.51
964 1015 0.896019 CGGACTCCCTCACAGTCAGT 60.896 60.000 2.46 0.00 41.94 3.41
965 1016 0.892063 GGACTCCCTCACAGTCAGTC 59.108 60.000 2.46 0.00 41.94 3.51
966 1017 1.621992 GACTCCCTCACAGTCAGTCA 58.378 55.000 0.00 0.00 40.18 3.41
974 1025 1.832608 ACAGTCAGTCACGGAGGCA 60.833 57.895 0.00 0.00 0.00 4.75
988 1039 0.385598 GAGGCAAAGGCGACGTTTTC 60.386 55.000 0.00 0.00 42.47 2.29
1023 1080 4.329545 GCAACCACCCAGGAGCGA 62.330 66.667 0.00 0.00 41.22 4.93
1076 1133 0.748367 CAGATGCAGCTGCCTCATGT 60.748 55.000 35.45 20.69 41.18 3.21
1116 1173 0.250166 CTTTCCCGACCACCTTCGTT 60.250 55.000 0.00 0.00 37.29 3.85
1617 1674 1.376466 GCTCTTCCCCTTGCAGTCA 59.624 57.895 0.00 0.00 0.00 3.41
1626 1683 3.476031 CTTGCAGTCACCCACCCGT 62.476 63.158 0.00 0.00 0.00 5.28
1665 1732 1.211457 CCTCCTTGGTATGCTCTGCTT 59.789 52.381 0.00 0.00 0.00 3.91
1780 1852 2.027192 TCTGCCCCTGTGTTGTAATCTC 60.027 50.000 0.00 0.00 0.00 2.75
1904 1980 6.963083 ACTGGCAGTAGTAGTAGATTTAGG 57.037 41.667 20.61 0.00 0.00 2.69
1905 1981 5.302313 ACTGGCAGTAGTAGTAGATTTAGGC 59.698 44.000 20.61 0.00 0.00 3.93
2035 2115 2.019984 GGATGCCCAAGTTGACATCTC 58.980 52.381 25.32 17.21 39.10 2.75
2037 2117 0.396435 TGCCCAAGTTGACATCTCGT 59.604 50.000 3.87 0.00 0.00 4.18
2038 2118 1.621317 TGCCCAAGTTGACATCTCGTA 59.379 47.619 3.87 0.00 0.00 3.43
2039 2119 2.037902 TGCCCAAGTTGACATCTCGTAA 59.962 45.455 3.87 0.00 0.00 3.18
2040 2120 3.270877 GCCCAAGTTGACATCTCGTAAT 58.729 45.455 3.87 0.00 0.00 1.89
2046 2126 5.339008 AGTTGACATCTCGTAATAAGGCA 57.661 39.130 0.00 0.00 0.00 4.75
2077 2167 9.533253 AAATATTCAAAACCTGAACTTGAACTG 57.467 29.630 0.00 0.00 46.80 3.16
2078 2168 6.773976 ATTCAAAACCTGAACTTGAACTGA 57.226 33.333 0.00 0.00 46.80 3.41
2079 2169 5.818136 TCAAAACCTGAACTTGAACTGAG 57.182 39.130 0.00 0.00 0.00 3.35
2080 2170 4.096382 TCAAAACCTGAACTTGAACTGAGC 59.904 41.667 0.00 0.00 0.00 4.26
2081 2171 2.262423 ACCTGAACTTGAACTGAGCC 57.738 50.000 0.00 0.00 0.00 4.70
2082 2172 1.771255 ACCTGAACTTGAACTGAGCCT 59.229 47.619 0.00 0.00 0.00 4.58
2083 2173 2.173569 ACCTGAACTTGAACTGAGCCTT 59.826 45.455 0.00 0.00 0.00 4.35
2084 2174 3.391296 ACCTGAACTTGAACTGAGCCTTA 59.609 43.478 0.00 0.00 0.00 2.69
2085 2175 3.748568 CCTGAACTTGAACTGAGCCTTAC 59.251 47.826 0.00 0.00 0.00 2.34
2086 2176 4.503991 CCTGAACTTGAACTGAGCCTTACT 60.504 45.833 0.00 0.00 0.00 2.24
2091 2181 6.176014 ACTTGAACTGAGCCTTACTTACTT 57.824 37.500 0.00 0.00 0.00 2.24
2156 2262 7.277098 TCCGTATAAGAGTTAGTGCAAATTCAC 59.723 37.037 0.00 0.00 37.24 3.18
2160 2266 5.679734 AGAGTTAGTGCAAATTCACAGTG 57.320 39.130 0.00 0.00 39.35 3.66
2164 2270 1.134226 GTGCAAATTCACAGTGCTGC 58.866 50.000 0.00 3.01 39.09 5.25
2193 2300 6.360618 CCAGAGGCTACATTTTTATCTCCTT 58.639 40.000 0.00 0.00 0.00 3.36
2194 2301 6.261826 CCAGAGGCTACATTTTTATCTCCTTG 59.738 42.308 0.00 0.00 0.00 3.61
2195 2302 6.261826 CAGAGGCTACATTTTTATCTCCTTGG 59.738 42.308 0.00 0.00 0.00 3.61
2196 2303 5.449553 AGGCTACATTTTTATCTCCTTGGG 58.550 41.667 0.00 0.00 0.00 4.12
2197 2304 4.038042 GGCTACATTTTTATCTCCTTGGGC 59.962 45.833 0.00 0.00 0.00 5.36
2198 2305 4.889995 GCTACATTTTTATCTCCTTGGGCT 59.110 41.667 0.00 0.00 0.00 5.19
2215 2322 3.578716 TGGGCTCTCAGGCATTATAGTAC 59.421 47.826 0.00 0.00 43.44 2.73
2216 2323 3.578716 GGGCTCTCAGGCATTATAGTACA 59.421 47.826 0.00 0.00 43.44 2.90
2217 2324 4.322349 GGGCTCTCAGGCATTATAGTACAG 60.322 50.000 0.00 0.00 43.44 2.74
2218 2325 4.282195 GGCTCTCAGGCATTATAGTACAGT 59.718 45.833 0.00 0.00 40.97 3.55
2219 2326 5.477291 GGCTCTCAGGCATTATAGTACAGTA 59.523 44.000 0.00 0.00 40.97 2.74
2220 2327 6.153680 GGCTCTCAGGCATTATAGTACAGTAT 59.846 42.308 0.00 0.00 40.97 2.12
2221 2328 7.310113 GGCTCTCAGGCATTATAGTACAGTATT 60.310 40.741 0.00 0.00 40.97 1.89
2257 2364 4.971830 GTGTCATCATTTTGTCACACACTG 59.028 41.667 0.00 0.00 36.22 3.66
2368 2476 1.322442 AAGCAGGGCACTTTTCTGAC 58.678 50.000 0.00 0.00 0.00 3.51
2369 2477 0.475906 AGCAGGGCACTTTTCTGACT 59.524 50.000 0.00 0.00 0.00 3.41
2372 2480 1.072965 CAGGGCACTTTTCTGACTCCT 59.927 52.381 0.00 0.00 0.00 3.69
2392 2500 3.225940 CTCTTCAATAATTGCCCCCTCC 58.774 50.000 0.00 0.00 0.00 4.30
2432 2541 9.952030 TTCCCAAAAATCCTGTTAAAATTATCC 57.048 29.630 0.00 0.00 0.00 2.59
2433 2542 9.332713 TCCCAAAAATCCTGTTAAAATTATCCT 57.667 29.630 0.00 0.00 0.00 3.24
2434 2543 9.382275 CCCAAAAATCCTGTTAAAATTATCCTG 57.618 33.333 0.00 0.00 0.00 3.86
2435 2544 9.382275 CCAAAAATCCTGTTAAAATTATCCTGG 57.618 33.333 0.00 0.00 0.00 4.45
2456 2572 3.953612 GGGGAACACATTGATCTGCATTA 59.046 43.478 0.00 0.00 0.00 1.90
2459 2575 5.220931 GGGAACACATTGATCTGCATTAGAC 60.221 44.000 0.00 0.00 38.49 2.59
2535 2651 2.505364 AATCAACCTGGGGAGCTGCC 62.505 60.000 17.42 17.42 0.00 4.85
2563 2680 1.002134 GGTGGTGATGGTGGGAGTG 60.002 63.158 0.00 0.00 0.00 3.51
2596 2713 2.629617 ACTGATCAAAAGGCACCAAAGG 59.370 45.455 0.00 0.00 0.00 3.11
2616 2733 7.364320 CCAAAGGAAACAATAATAATCCCGGTT 60.364 37.037 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.793252 ATGATATCAACTCAAGTAATTTGCAAC 57.207 29.630 9.99 0.00 36.70 4.17
33 34 6.264518 TCTTTTGGTTTCTAGGGCTTTTACTG 59.735 38.462 0.00 0.00 0.00 2.74
53 62 2.104170 TCACCCGTTTTTGGCTCTTTT 58.896 42.857 0.00 0.00 0.00 2.27
77 86 3.058708 TCATCTTCGCTTTTTCTGCTGTG 60.059 43.478 0.00 0.00 0.00 3.66
79 88 3.744987 CTCATCTTCGCTTTTTCTGCTG 58.255 45.455 0.00 0.00 0.00 4.41
90 99 3.679980 TGTCTAACTTTGCTCATCTTCGC 59.320 43.478 0.00 0.00 0.00 4.70
92 101 6.541086 CACATGTCTAACTTTGCTCATCTTC 58.459 40.000 0.00 0.00 0.00 2.87
95 104 4.154737 TGCACATGTCTAACTTTGCTCATC 59.845 41.667 0.00 0.00 0.00 2.92
137 146 0.384725 GTTGTGTGCTCGATGTGTGC 60.385 55.000 0.00 0.00 37.59 4.57
143 152 1.296715 GGAGGGTTGTGTGCTCGAT 59.703 57.895 0.00 0.00 0.00 3.59
172 181 5.470845 AAATAAGCACATGTCTAGAACGC 57.529 39.130 0.00 0.00 0.00 4.84
174 183 7.029563 CCCAAAAATAAGCACATGTCTAGAAC 58.970 38.462 0.00 0.00 0.00 3.01
176 185 6.480763 TCCCAAAAATAAGCACATGTCTAGA 58.519 36.000 0.00 0.00 0.00 2.43
209 218 4.876107 CGAGTGAGTACAATTTATTGCCCT 59.124 41.667 2.46 0.00 41.38 5.19
235 244 0.809636 TGTGCCAATGACGCTATCGG 60.810 55.000 0.00 0.00 40.69 4.18
292 303 2.126071 TCGCTACGTGGCAGAAGC 60.126 61.111 24.15 10.19 41.10 3.86
318 329 5.359292 GGACGGTTTACAATAGGAGTAGTCT 59.641 44.000 0.00 0.00 0.00 3.24
320 331 5.018809 TGGACGGTTTACAATAGGAGTAGT 58.981 41.667 0.00 0.00 0.00 2.73
335 346 4.761975 ACGACATAAACATATGGACGGTT 58.238 39.130 7.80 0.00 36.50 4.44
362 373 5.880054 AAGCATAGTGTCTTTTTGCGTAT 57.120 34.783 0.00 0.00 38.32 3.06
372 383 5.012561 ACTCCTTGAAGAAAGCATAGTGTCT 59.987 40.000 0.00 0.00 34.24 3.41
378 389 4.256920 GCAGACTCCTTGAAGAAAGCATA 58.743 43.478 0.00 0.00 34.24 3.14
379 390 3.080319 GCAGACTCCTTGAAGAAAGCAT 58.920 45.455 0.00 0.00 34.24 3.79
440 451 2.288152 GGAATTCGCTGGCAACTTTTCA 60.288 45.455 0.00 0.00 37.61 2.69
455 466 9.760077 TTACCATCTATAAGAGTTTCGGAATTC 57.240 33.333 0.00 0.00 0.00 2.17
458 469 9.760077 GAATTACCATCTATAAGAGTTTCGGAA 57.240 33.333 0.00 0.00 0.00 4.30
474 493 5.582550 GCCTGCAAAGTTAGAATTACCATC 58.417 41.667 0.00 0.00 0.00 3.51
476 495 3.438781 CGCCTGCAAAGTTAGAATTACCA 59.561 43.478 0.00 0.00 0.00 3.25
538 563 3.160047 ATCTGAGCTCCCCCGCAG 61.160 66.667 12.15 0.88 34.47 5.18
597 632 2.290705 CCCCGTCCTTCCTAAAACACAT 60.291 50.000 0.00 0.00 0.00 3.21
625 660 8.066595 TGTATGCGTTTTTGAATTTTGATTTGG 58.933 29.630 0.00 0.00 0.00 3.28
712 750 0.310543 CTCGCTCCTGCTACTGCTAG 59.689 60.000 0.00 0.00 40.48 3.42
728 766 2.755655 ACCACTTGTAGATCTGACCTCG 59.244 50.000 5.18 0.00 0.00 4.63
877 920 1.610873 GGGGGCGTGGAATTTCCTA 59.389 57.895 16.25 0.71 37.46 2.94
963 1014 3.423154 CGCCTTTGCCTCCGTGAC 61.423 66.667 0.00 0.00 0.00 3.67
964 1015 3.621805 TCGCCTTTGCCTCCGTGA 61.622 61.111 0.00 0.00 0.00 4.35
965 1016 3.423154 GTCGCCTTTGCCTCCGTG 61.423 66.667 0.00 0.00 0.00 4.94
988 1039 3.085952 TGCCTCCATGGTAAAAAGGAG 57.914 47.619 18.42 3.49 45.68 3.69
1116 1173 3.311110 GAGGTGGTGTCGGCCTGA 61.311 66.667 0.00 0.00 31.89 3.86
1617 1674 3.626924 GCTCACTGACGGGTGGGT 61.627 66.667 7.05 0.00 39.66 4.51
1665 1732 1.742411 GCATTTAGCAGCGACCAGGTA 60.742 52.381 0.00 0.00 44.79 3.08
1760 1832 2.290260 TGAGATTACAACACAGGGGCAG 60.290 50.000 0.00 0.00 0.00 4.85
1780 1852 3.120546 CCAAATCGCTGTTACAGACACTG 60.121 47.826 17.40 5.84 37.52 3.66
1904 1980 2.673326 GCAAGAAGAGGAAAATGCCAGC 60.673 50.000 0.00 0.00 0.00 4.85
1905 1981 2.824341 AGCAAGAAGAGGAAAATGCCAG 59.176 45.455 0.00 0.00 34.44 4.85
1964 2040 8.299570 CCAACAGCTTTAATGTACAAGATTTCT 58.700 33.333 0.00 0.00 0.00 2.52
1965 2041 8.296713 TCCAACAGCTTTAATGTACAAGATTTC 58.703 33.333 0.00 0.00 0.00 2.17
2038 2118 9.884636 GGTTTTGAATATTTTACCTGCCTTATT 57.115 29.630 0.00 0.00 0.00 1.40
2039 2119 9.267071 AGGTTTTGAATATTTTACCTGCCTTAT 57.733 29.630 9.56 0.00 34.84 1.73
2040 2120 8.527810 CAGGTTTTGAATATTTTACCTGCCTTA 58.472 33.333 18.22 0.00 44.12 2.69
2046 2126 9.981114 CAAGTTCAGGTTTTGAATATTTTACCT 57.019 29.630 0.00 0.00 46.85 3.08
2077 2167 4.441773 GCCTGTCCTAAGTAAGTAAGGCTC 60.442 50.000 3.16 0.00 35.98 4.70
2078 2168 3.451540 GCCTGTCCTAAGTAAGTAAGGCT 59.548 47.826 3.16 0.00 35.98 4.58
2079 2169 3.451540 AGCCTGTCCTAAGTAAGTAAGGC 59.548 47.826 2.13 2.13 38.83 4.35
2080 2170 4.710375 TCAGCCTGTCCTAAGTAAGTAAGG 59.290 45.833 0.00 0.00 0.00 2.69
2081 2171 5.916661 TCAGCCTGTCCTAAGTAAGTAAG 57.083 43.478 0.00 0.00 0.00 2.34
2082 2172 6.869206 AATCAGCCTGTCCTAAGTAAGTAA 57.131 37.500 0.00 0.00 0.00 2.24
2083 2173 6.668283 AGAAATCAGCCTGTCCTAAGTAAGTA 59.332 38.462 0.00 0.00 0.00 2.24
2084 2174 5.485708 AGAAATCAGCCTGTCCTAAGTAAGT 59.514 40.000 0.00 0.00 0.00 2.24
2085 2175 5.983540 AGAAATCAGCCTGTCCTAAGTAAG 58.016 41.667 0.00 0.00 0.00 2.34
2086 2176 6.895756 TCTAGAAATCAGCCTGTCCTAAGTAA 59.104 38.462 0.00 0.00 0.00 2.24
2091 2181 4.079154 TCCTCTAGAAATCAGCCTGTCCTA 60.079 45.833 0.00 0.00 0.00 2.94
2156 2262 0.814410 CCTCTGGCATAGCAGCACTG 60.814 60.000 0.00 0.00 35.83 3.66
2178 2285 5.196695 GAGAGCCCAAGGAGATAAAAATGT 58.803 41.667 0.00 0.00 0.00 2.71
2193 2300 2.694397 ACTATAATGCCTGAGAGCCCA 58.306 47.619 0.00 0.00 0.00 5.36
2194 2301 3.578716 TGTACTATAATGCCTGAGAGCCC 59.421 47.826 0.00 0.00 0.00 5.19
2195 2302 4.282195 ACTGTACTATAATGCCTGAGAGCC 59.718 45.833 0.00 0.00 0.00 4.70
2196 2303 5.461032 ACTGTACTATAATGCCTGAGAGC 57.539 43.478 0.00 0.00 0.00 4.09
2198 2305 9.809395 ACTAATACTGTACTATAATGCCTGAGA 57.191 33.333 0.00 0.00 0.00 3.27
2368 2476 3.117360 AGGGGGCAATTATTGAAGAGGAG 60.117 47.826 9.36 0.00 0.00 3.69
2369 2477 2.858768 AGGGGGCAATTATTGAAGAGGA 59.141 45.455 9.36 0.00 0.00 3.71
2372 2480 2.858768 AGGAGGGGGCAATTATTGAAGA 59.141 45.455 9.36 0.00 0.00 2.87
2392 2500 7.041167 GGATTTTTGGGAAGATTTTGTTGGAAG 60.041 37.037 0.00 0.00 0.00 3.46
2428 2537 4.047166 AGATCAATGTGTTCCCCAGGATA 58.953 43.478 0.00 0.00 0.00 2.59
2429 2538 2.854967 AGATCAATGTGTTCCCCAGGAT 59.145 45.455 0.00 0.00 0.00 3.24
2430 2539 2.025981 CAGATCAATGTGTTCCCCAGGA 60.026 50.000 0.00 0.00 0.00 3.86
2431 2540 2.372264 CAGATCAATGTGTTCCCCAGG 58.628 52.381 0.00 0.00 0.00 4.45
2432 2541 1.747355 GCAGATCAATGTGTTCCCCAG 59.253 52.381 0.00 0.00 0.00 4.45
2433 2542 1.075212 TGCAGATCAATGTGTTCCCCA 59.925 47.619 0.00 0.00 0.00 4.96
2434 2543 1.838112 TGCAGATCAATGTGTTCCCC 58.162 50.000 0.00 0.00 0.00 4.81
2435 2544 4.883585 TCTAATGCAGATCAATGTGTTCCC 59.116 41.667 0.00 0.00 0.00 3.97
2479 2595 2.630158 ACAAGATGCAGACAGAGATGC 58.370 47.619 0.00 0.00 42.86 3.91
2513 2629 1.075601 AGCTCCCCAGGTTGATTGAA 58.924 50.000 0.00 0.00 0.00 2.69
2521 2637 4.990910 AGTGGCAGCTCCCCAGGT 62.991 66.667 2.88 0.00 31.89 4.00
2535 2651 1.676916 CCATCACCACCAGTAGCAGTG 60.677 57.143 0.00 0.00 0.00 3.66
2563 2680 5.767168 CCTTTTGATCAGTCTCATATTCCCC 59.233 44.000 0.00 0.00 0.00 4.81
2596 2713 6.127563 ACCACAACCGGGATTATTATTGTTTC 60.128 38.462 6.32 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.