>input_sequence_73430
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----------------ATGGAGGCAACCACCCAGGAGCGACCCGCGCCGCCGCCGCCGTCGCCGTCGTCGGTGCAGATGC
AGCTGCCTCATGTGGCCGCCGACCCGTCCAACCCTTTCCCGACCACCTTCGTTCAGGCCGACACCACCTCCTTCAAGCAG
GTCGTGCAGATCCTCACCGGCACCCCGGAGACCGCGGCTGCGGCGGCGGCGGGGGGCGCGGCGGGCGCGCCGGCGGCTAA
ACCGGCGCCCACGCCGACCGGGCCCAAGAAGCCGGCCTTCAAGCTCTACGAGCGGCGGGGCAGCATGAAGAGCCTGAAGA
TGCTCTGCCCGCTCCTCCCCGCCGCCTTCGCCGCCGGCGGCTCTGGTGGCTGCAGCGGGTTCTCCCCGCGGGGGTTCTCG
CCGCGCGGGCTGGAGGTGCTGTCGCCGAGCATGCTGGACTTCCCGTCGCTGGCGCTGGGGAGCCCCGTGACGCCGCTCCC
GCCGCTGCCAGGGTCGCGGGAGGCCGCCGCGGCCGAGGACCGCGCCATCGCCGAGAAGGGGTTCTACCTCCACCCGTCCC
CGCGCGGCAATGCCAGCGGCCGCGGCGACCTGACGCCGCCGCCCAGGCTGCTCCCGCTCTTCCCCTTGCAGTCACCCACC
CGTCAGTGA-----------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G158200
CCTTGTTGCAAATTACTTGAGTTGATATCATTCC--------AGTAAAAGCCCTAGAAACCAAAAGAGCCAAAAACGGGT
GAAACCACAGCAGAAAAAGCGAAGATGAGCAAAGTTAGACATGTGCAGGGTTTCCTCGGAGGATGGCACACATCGAGCAC
ACAACCCTCCCGCCAGGCATGCGTTCTAGACATGTGCTTATTTTTGGGATGAAAACAAGGGCAATAAATTGTACTCACTC
GTTCCGATAGCGTCATTGGCAC-AAGGTTTGCATGCCTGGAGCAAAATGATTCCCTTTCG-AGCTTCTGCCACGTAGCGA
GGCTCGAAAGACTACTCCTATTGTAAACCGTCCATATGTTTATGTCGTTTTCATACGCAAAAAGACACTATGCTTTCTTC
AAGGAGTCTGCGAACCGTCCGTCCATGTATACACGCCATGTCGTTTGGTATGAAAAGTTGCCAGCGAATTCCGAAACTCT
--------TATAGATGGTAATTCTAACTTTGCAGGCGGCGAT----TT--TTTTTTTTGCAAGGGCACTCGATGATTTTT
TTC--TGCGGGGGAGCTCAGATGAAATAATAAGAAATCTTCTTTCTAGAATTG--------TTATTTTTACATGTGTTTT
AGGAAGGACGGGGTCGGCACCAAATCAAAATTCAAAAACGCATACAACTCAGTCGTTCAACT---AAAAAAAAATGATGT
GCTGGAAACGGAGTAGGAGTGGTGTACTGCTAGCAGTAGCAGGAGCGAGGTCAGATCTACAAGTGGTAGAGTAGCCACAG
CCCACAGGCACATACAGATACAGCCATGCTGCGGTAGCCAGGTCGCGCGC-----ACACACAATTGCCAACATATTCCGG
CCGAGGGGAGGGCGCGGGTGGAAATCCAGATCCCGAAGCTAGGAAATTCCACGCCCCCCGAAAGCCCATAAAACCCACGC
T--------CTCCCTCACGCCCTGCCTTGCTGCGCCGGACTCCCTCACAGTCAGTCACGGAGGCAAAGGCGACGTTTTCT
------CCTTTTTACCATGGAGGCAACCACCCAGGAGCGACCCGCGCCGCCGCCGCCGTCGCCGTCGTCGGTGCAGATGC
AGCTGCCTCATGTGGCCGCCGACCCGTCCAACCCTTTCCCGACCACCTTCGTTCAGGCCGACACCACCTCCTTCAAGCAG
GTCGTGCAGATCCTCACCGGCACCCCGGAGACCGCGGCTGCGGCGGCGGCGGGGGGCGCGGCGGGCGCGCCGGCGGCTAA
ACCGGCGCCCACGCCGACCGGGCCCAAGAAGCCGGCCTTCAAGCTCTACGAGCGGCGGGGCAGCATGAAGAGCCTGAAGA
TGCTCTGCCCGCTCCTCCCCGCCGCCTTCGCCGCCGGCGGCTCTGGTGGCTGCAGCGGGTTCTCCCCGCGGGGGTTCTCG
CCGCGCGGGCTGGAGGTGCTGTCGCCGAGCATGCTGGACTTCCCGTCGCTGGCGCTGGGGAGCCCCGTGACGCCGCTCCC
GCCGCTGCCAGGGTCGCGGGAGGCCGCCGCGGCCGAGGACCGCGCCATCGCCGAGAAGGGGTTCTACCTCCACCCGTCCC
CGCGCGGCAATGCCAGCGGCCGCGGCGACCTGACGCCGCCGCCCAGGCTGCTCCCGCTCTTCCCCTTGCAGTCACCCACC
CGTCAGTGAGCCTCGCTCGCTCCTCCTTGGTA----------TGCTCTGCTTACC----TGGTCGCTGCT-AAATGCTAG
GCTCCTGGAGTGCGAGGTCGATTCGATCTGTGGATTATTTGCTCCTCTTCTCTCCCTGGGAGGATCCGTGTCTGCCCCTG
TGTTGTAATCTCAGTGTCTGTAACAGCGATTTGGCTCATAAGAGGGATTAATTGATCACTCCACCAGCCTGAGTGTTCTT
-GTCTCTTTACCATTGGCTATTAGTAGTTTCATACTG---GCAGTAGTAGTAGATTTAGGCTGGCATTTTCCTCTTCTTG
CTTCGTGAGCTTGTCTTGTCATATTACTAGTTTGGTATTAGAAATCTTGTACATTAAAGCTGTTGGAATTGGGATTT---
ATGGGAGGCAAGTGGAT-GCCCAAGTTGACATCTCGTAATAAGGCAGGTAAAATATTCAAAACCTGAACTTGAA------
----CTGAGCCTTACTTACTTAGGACAGGCTGATTTCTAGAGGACGGCTACT----------------CCAGTACTCCGT
ATAAGAGTTAGTGCAAATTCACAGTGCTGCTATG-CCAGAGGCTACATTTTTATCTCCTTGGGCTCTCAGGCATTATAGT
ACAGTATTAGTTATTATTCTGTGTCATCATTTTGTCACACACTGGCTGATCAGGATCAGTTAAGAAGAAGAAACTTGATC
TGAGCAGAGGGCCCCCTGTCTCACTTCAGCCTTGTTTCAAGGAAGTGGCAGCTCAAAGCAGGGCACTTTT-CTGACTCCT
CTTCAATAATTGCCCCCTCCTTCCAACAAAATCTTCCCAAAAATCCTGTTAAAA-TTATCCTGGGGAACACATTGAT---
----CTGCATTAGACGAGAGGCAAAAAATGCTAGGCATCTCTGTCTGCATCTTGTTCTTTTTATAATATTCAATCAACCT
GGGGAGCTGCCACTGCTACTGGTGGTGATG-GTGGGAGTGGGGAATATGAGACTGATCAAAAGGCACCAAAGGAAACAAT
AATAATCCCGGTTGTGGTGAGCTCCACCA
>chr3D_1
CCTTATTGCAAATTACTTGAGTTGATATCATTCTAGACTTCTAGTAAAAGCCCTAGAAACCGAAAGAGCCAAAAACGGGC
GAAACTAAAGCAGAAAACCCCAAAATGAGCAAAGTGAGACATGTGCAGGGTTTCCTCGGAAGATGACACGCGTCGAGCAC
ATAACACTCCCGCAAGGCATACATGCTAGACATGTTCTTATTTTTGCGATGAAAACACGGACAATAAATTGTACTCACTC
GTTGCGATAGCGTCATTGGCAC-AAGGTTTGCATGCCTGGAGCAAAATGATTCCCTTTCG-AACTTCTGCCACGTAGCAT
GGCTTGAAGGGCTACTCCTATTGTAGGCCGTCCATATGTTTATGTCGTTTTCTTACGCAAAA-GACATCGTGCTTTCTTC
AAGGAGTCTGCGTACCGTCCATCCATATATACACGCCATGTCGTTTGGTACGAAAAGTTGCTAGA--------AAACTCT
--------TATATAC-GTAATTCTAACTTCGCAGGTGGCGAAGTACTT--TTTTTATGGTGAGGGCGCTCGATGAAGTTT
TTTTTTGCGGGGGCGCTCAGATGAAATAATAAGAAATCTTCTTTCTAGAATTG--------TTATTTTTACGTGTGTTTT
CGGAAGGACGGGC-CGGCATCAAATCAAAATTCAAAAACGCATACAACTCAGTCGTCCAACTCAAAAAAATAAATGATGT
GCTGGAAACGGAGTAGGAGTGGTGTACTGGTAGCAGTAGCAGGAGTGAGGTCAGATCTACAAGTGGTAGAGTAGCCACAG
CCCACAGGCAGATACAGATACAGCCATGCTGCGGTAGCCAGGTCGCGCGCCGCGCACACACAATTGCCAACATATTCCGC
CCGAGGGGAGGGCGCGGGTGGAAATCCAGATCCCGAAGCCAGGAAATTCCACGCCCCCCGAAAGCCCATAAAACCCACGC
T--------CTCCCTCCCT--CTGCCTTGCTGCGCTGGACTCCCTCACAGTCA----CGGAGGCGAAGGCGACGGTTTTT
TTCTGCCCTTTTTACCATGGAGGCAACCACCCAGGAGCGCCCCGCGCCGCCGCCGCCGTCGCCGTCGTCGGTGCAGATGC
AGCTGCCGCATGCGGCCGCCGACCCGTCCAACCCTTTCCCGACCACCTTCGTGCAGGCCGACACCACCTCTTTCAAGCAG
GTCGTGCAGATCCTCACCGGCACCCCGGAGACCGCGGCCGCGGCGGCGGCGGGGGGCGCGGCGGGCGCGCCGGCGGCTAA
GCCGGCGCCCACGGCGACCGGGCCCAAGAAGCCGGCCTTCAAGCTCTACGAGCGGCGGGGCAGCATGAAGAGCCTGAAGA
TGCTCTGCCCGCTCCTCCCCGCCGCCTTCGCCGCCGGCGGCTCCGGTGGCTGCAGCGGGTTCTCCCCGCGGGGGTTCTCG
CCGCGCGGGCTGGAGGTGCTGTCGCCGAGCATGCTGGACTTCCCGTCGCTGGCGCTGGGGAGCCCCGTGACGCCGCTCCC
GCCGCTGCCGGGGTCGCGGGAGGCCGCCGCGGCCGAAGACCGCGCCATCGCCGAGAAGGGGTTCTACCTCCACCCGTCCC
CGCGCGGCAATGCCAGCGGCCGCGGCGACCTGACGCCGCCGCCCAGGCTGCTCCCGCTCTTCCCCTTGCAGTCGCCCACC
CGGCAGTGAGCCTCGCTCGCTCCTCCTTGGTA----------TGCTCTGCTCACCCGGTTGGTCGCTGCT-AAATGCTAG
GCTCCTGGAGTGCGAGGTGGATTCGATCTGTGGATTATTTGCTCCTCTTCTCTCCCTGGGAGGATCCGTGTATGCCCCTG
TGTTGTAATCTTAGTGTCTGTAACAGCGATTTGGCTCATAAGAGGGATTAATTGATCACTCCACCAGTCTGAGTGTTCTT
TGTCTCTTTACCATTGGCTATTAGTAGTTTCATACTG---GCAGTAGTGGTAGATTTAGCTTGGCATTTTCCTCTTCTTG
CTTCGTGAGCTTGTCTTGTCATATTACTAGTTTGGTATTGCAAATCTTGTACATTAAAGCTGTTGGAATTGGGATT---C
ATGGGAGGCAAGTGGAT-GCCCAAGTTGACATCTTGC---AAGGCTGGTAAAATATTCAAAACCTGAACTTGAA------
----CT----------TACTGAGGACAGGCTGATTTCTAGATGACGGCTACTACTCCAGTAGGCCACTCCAGTACTCCGT
ATAAGAGTTGGTGCAAATTCAAAGTACTGGTATGCCCAGAGGCTGCATTTTTATCTCCT------CTAGGGCATTATAGT
A-------AGTTATTATTCTGTGTCATCATTTTGTCACACACTCGCTGATCAGGATCAGTTAAGAAGAAGAAACTCGATC
TGAGCAGAGGGCCCCCTGTCTCACTTCAGCCTTGTTTCAAGGAAGTGGCAGCTCAAAGCAGGGCACTTTT-CTGAACCCC
CTTCAATAATTGTCCCCTCTTTCCAACAAAATCTTGCTAAAAATCCTGTTAAAA-TCTC-----GGAACACATTGAT---
----CTGCATTGAATCGAAACAAAAAAATGCTAGCCATCTCTGTCTGCATCTTGTTCTTTTTATAATAATCAATCATCCT
GGGGAGCTGCTACTGCTACTGGTGGTGATATGTGGGAGT-GGGAATATGAGACTGATCAAAAGGCACCAAAGAAAACAAT
AATAATCCCGGTCGTGGTGAGCTCCACCA
>chr3A_7
------TGCAATTTACTTGAGTCCATATCGTTCTAG--------TAAAAGCCGTAAAAACCGAAAGAGCCTCAAATGAGT
GAAATTGAAGCACAAACACCTCAAATGAGCAAAGCTAGACATGCGTGGGGTTTCCACAAAGGATGACACACGTCGATCGC
ACAATGCTCCCGCCAGGCATACCAGCTAGATATGTGCTTATTTTTGGGATGAAACCATGGGCAATAAATTGTACTCACTC
GTTGCTATACCATCGTCGGCATAAAGGTTTGCATGAGCGAAGCATACATATTCCCTTTTTTAACTTCTGCCACGCAGCGA
GGCTCGACGGGCGACTCCTATTGTATACCGTCCATAGGTTTATGTCCTTCCCTTACGCAAAACGACACAGTGCTTTTTTC
GAGGAGTCTGCAAACCGTCCGTCCATGTATACACGCCATATCGTTTGGTGCGAAAAGTTGCCTGCAAACTCGTCCAAAGC
CCCTATAGTATATACGTTAATCCTAACTTTGGAGGCGCTCGATGATTTCGTTTTTCTTGCGAGGGTGCTCTATGAAACAT
TTTACCAT-----------GAGGAAATAATAAGAAACCGGCTTTCTATTTTTTTACTGTATTTATGTGTGTGTGTTTTAT
TGGAAGGACGGGGTTGGC-----ATCAAAATTTCAAAATGTATACAGCCCGGTCGTCCAACCG------AAAAATGATGT
GCTGGAAACGGAGTAGGAGTGGTGTACTGGTAGCAGGAGGAGGAGTGAGGTCAGATCTACAAGTGGTAGAGTAGCCACAG
CCCACAGGCGCATACAGATACAGCCATGCTGCGGTAGCCAGGTCGCGCGCCGCGCACACACAATTGCCAACATATTC---
-CGAGGGGAGGGCGCGGGTGGAAATCCAGATCCCGAAGCCAGGAAATTCCACGCCCCCCGAAAGCCCATAAAACCCACGC
TCGCCCTCCCTCCCTCCCT--CTGCCTTGCTGCGCCGGACTCCCTCACAGTCA----CGGAGGCGAAGGCGACGTTTTTC
TTCTTCCCTTTTTACCATGGAGGCAACCACCCAGGAGCGCCCCGCGCCGCCGCCGCCGTCGCCGTCGTCGGTGCAGATGC
AGCTGCCGCACGCGGCCGCCGACCCGTCCAACCCTTTCCCGACCACCTTCGTGCAGGCCGACACCACCTCCTTCAAGCAG
GTCGTGCAGATCCTCACCGGCACCCCGGAGACCGCGGCCGCGGCGGCGGCGGGGGGCGCGGCGGGCGCGCCGGCAGCTAA
GCCGGCCCCCACGCCGACCGGGCCCAAGAAGCCGGCCTTCAAGCTCTACGAGCGGCGCGGCAGCATGAAGAGCCTGAAGA
TGCTCTGCCCGCTCCTCCCCGCCGCCTTCGCCGCCGGCGGCTCCGGTGGCTGCAGCGGGTTCTCCCCGCGGGGGTTCTCG
CCGCGCGGGCTGGAGGTGCTGTCGCCCAGCATGCTGGACTTCCCGTCGCTGGCGCTGGGGAGCCCCGTGACGCCGCTCCC
GCCGCTGCCGGGGTCGCGGGAGGCAGCCGCGGCCGAGGACCGCGCCATCGCCGAGAAGGGGTTCTACCTCCACCCCTCGC
CGCGCGGCAATGCCAGCGGCCGCGGCGACCTGACGCCGCCGCCCAGGCTGCTCCCGCTCTTCCCCTTGCAGTCGCCCACC
CGGCAGTGAGCCTCGCCCGCTCCTTGCTGGTATGCTCTGCTCTGCTCTGCTCACC----CGGTCGCTGCTAAAATGCTAG
GCTCCCGGAGCGCGAGGTCGATTCGATCTGTGGATTATTTGCTCCTCTTCTCTCCCCGGGAGGATCCGTGTATGCCCCTG
TGTTGTAATCTTAGTGTCTGTAACAGCGATTTGGCTCATAAGAGGGATTAATTGATCACTCCACCGGCCCGAGTGTTCTT
TGTCTCTTTACCATTGGCTATTAGTAGTTTCATACTGGCAGCAGTAGTAGTAGATTTAGCTTGGCATTTTCCTCTTCTCG
CTTCGTGAACTTGTCTTGTCATATTACTAGTTTGGTGTTGCAAATCTTGTACATTAAAGCTGTTGGAATTGGGATTTACC
ATGGGAGGCAAGTGGGACGCCCAAGTTGACATCTTGC---AAGGCTGGTAAAATATTCAAAACCTGGACTTGAACTGAGC
CTTGCT----------TGCTCAGGACGGGCTGATTTCTAGAGGACGGCTG----------------CTCCAGTACTCCGT
ATGAGAGTTAGTGCAAATTCAAAGTA-TGGTATG-CCAGAGGCTGCATTTTTAGCTCCT------CTCAGGCATTACAGT
A-------AGTTATTATTCCGTGTCATCATTTTGTCACACACTCGCTGATCAGGGTCAGTTAAGAAGAAGAAACCTGATC
TGAGCGGAGGGGCCCCTGTCTCACTTCAGCCTTGTTTCGAGGAAGTGGCAGCTCAAAGCAGGGCACTTTTTCTGAACACC
CTTCAATAATTGCCCCCTCTTTCCAACAAAATCTTCCCAAAAATCCCGTTAAAAATCTG-----GGAACACACACACTGA
TCTGCTGCATTGGAGGAGAGGCAAAAAATTATAGCCATCTCTGTCTGCATCTTGTTCTTTTTATAATCAAAT-TCGTCCT
GGGGAACTACTACTGCTACTGGTGGTGATG-GTGGGAGT-GGGAATATGAGACTGATGAAAAGGCAGGGAAGAAAACAAT
AATAATCCCGGTCGTGGTGAGCTCCACCA
>SNPs
----S----------------------------S---------------------------S------------------
-----S-S----------S-S--S-----------------------------------------S-----S--------
-----S--------------S-S-S--------------------------------S----------------------
---S----------------------------------------------------------S-----------------
--------S-S--------------S--------------------------S---------S-----SS----------
--------------------------------------------------S--------------S--S--SS-------
------------S-S--------------------------S-------------S----S-----S--------SS---
--S----------S---------------------------------------------------------S--------
S------------------S------------------------------------S-----------------------
-----------------------------S---------------S----------------------------------
-------------------------------------------------------------------------------S
---------------------------------------S----------------------------------------
----------------S-SSS--------------------------------SSSS-------S-------------S-
---------------------------------------S----------------------------------------
-------S----S---------------------------------------S---------------------------
--------------------------------------S-----------------------------------------
S-------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
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---------S----------------------------------------------------------------------
-------------------------------------------------------------------------S------
--S------------------------------------------------S----------------------------
-----------------------------------------------------------------------S--------
-----------S--------------------------------------------------------------------
-----------------------------------------------------------SS-------------------
---------------------------------------SS---------------------------------------
----------------------------------S-SSSS-----S----------------------------------
------SSSSSSSSSS----S-----------------------------------------------------------
---------------------S---S---S--------------S--------------SSSSSS---------------
-SSSSSSS-----------------------------------S------------------------------------
---------------------------------------------------------------------------SS--S
-------------------S------------------------------------SSSSSSSS----------------
-----------S--S-------------------S---------------------------------S-------S---
----------S----------------------------S--------------------------------S-------
------------S----------------
>forward_166
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------------------------------------------------------------------CACACATCGAGCAC
ACAACC--------------------------------------------------------------------------
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>reverse_2262
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---------------------CAGTGCTGCTATGCCAGAGG---------------------------------------
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