Multiple sequence alignment - TraesCS3B01G158100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G158100 chr3B 100.000 2384 0 0 1 2384 152879262 152876879 0.000000e+00 4403.0
1 TraesCS3B01G158100 chr3D 84.396 1788 162 60 660 2384 101861316 101859583 0.000000e+00 1648.0
2 TraesCS3B01G158100 chr3A 88.732 1065 63 30 660 1706 554017708 554018733 0.000000e+00 1249.0
3 TraesCS3B01G158100 chr3A 100.000 29 0 0 359 387 598995686 598995658 1.000000e-03 54.7
4 TraesCS3B01G158100 chr2D 83.484 775 67 23 740 1496 107000250 107000981 0.000000e+00 665.0
5 TraesCS3B01G158100 chr2B 83.400 753 74 20 735 1471 157314151 157314868 0.000000e+00 651.0
6 TraesCS3B01G158100 chr2A 83.554 681 62 22 741 1401 103363975 103364625 2.040000e-165 592.0
7 TraesCS3B01G158100 chr1A 91.908 173 14 0 1218 1390 536930769 536930597 2.370000e-60 243.0
8 TraesCS3B01G158100 chr1B 89.785 186 18 1 1210 1394 598925999 598926184 1.100000e-58 237.0
9 TraesCS3B01G158100 chr1B 89.583 48 4 1 359 406 687666981 687667027 2.560000e-05 60.2
10 TraesCS3B01G158100 chr1B 100.000 29 0 0 359 387 478045531 478045559 1.000000e-03 54.7
11 TraesCS3B01G158100 chr1B 100.000 29 0 0 357 385 591513694 591513722 1.000000e-03 54.7
12 TraesCS3B01G158100 chr7D 85.714 77 6 4 334 408 437208814 437208887 2.540000e-10 76.8
13 TraesCS3B01G158100 chr5A 100.000 30 0 0 358 387 491092022 491091993 3.310000e-04 56.5
14 TraesCS3B01G158100 chr5B 100.000 29 0 0 359 387 348375724 348375752 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G158100 chr3B 152876879 152879262 2383 True 4403 4403 100.000 1 2384 1 chr3B.!!$R1 2383
1 TraesCS3B01G158100 chr3D 101859583 101861316 1733 True 1648 1648 84.396 660 2384 1 chr3D.!!$R1 1724
2 TraesCS3B01G158100 chr3A 554017708 554018733 1025 False 1249 1249 88.732 660 1706 1 chr3A.!!$F1 1046
3 TraesCS3B01G158100 chr2D 107000250 107000981 731 False 665 665 83.484 740 1496 1 chr2D.!!$F1 756
4 TraesCS3B01G158100 chr2B 157314151 157314868 717 False 651 651 83.400 735 1471 1 chr2B.!!$F1 736
5 TraesCS3B01G158100 chr2A 103363975 103364625 650 False 592 592 83.554 741 1401 1 chr2A.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 609 0.105224 TCCGACGAGCCTCAAAACAA 59.895 50.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2058 0.110373 GCACGTCGTGGGTTTGAATC 60.11 55.0 25.7 2.97 33.64 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.864334 CCGGTCAGGGCATCTGGC 62.864 72.222 0.00 4.67 46.86 4.85
41 42 3.673484 CGCCCACCACCAAGCAAG 61.673 66.667 0.00 0.00 0.00 4.01
42 43 2.521708 GCCCACCACCAAGCAAGT 60.522 61.111 0.00 0.00 0.00 3.16
43 44 1.228429 GCCCACCACCAAGCAAGTA 60.228 57.895 0.00 0.00 0.00 2.24
44 45 0.611896 GCCCACCACCAAGCAAGTAT 60.612 55.000 0.00 0.00 0.00 2.12
45 46 1.176527 CCCACCACCAAGCAAGTATG 58.823 55.000 0.00 0.00 0.00 2.39
46 47 1.176527 CCACCACCAAGCAAGTATGG 58.823 55.000 0.00 0.00 42.60 2.74
47 48 1.176527 CACCACCAAGCAAGTATGGG 58.823 55.000 0.00 0.00 41.17 4.00
48 49 0.611896 ACCACCAAGCAAGTATGGGC 60.612 55.000 0.00 0.00 41.17 5.36
49 50 1.322538 CCACCAAGCAAGTATGGGCC 61.323 60.000 0.00 0.00 41.17 5.80
50 51 1.378514 ACCAAGCAAGTATGGGCCG 60.379 57.895 0.00 0.00 41.17 6.13
51 52 1.077787 CCAAGCAAGTATGGGCCGA 60.078 57.895 0.00 0.00 32.87 5.54
52 53 1.376609 CCAAGCAAGTATGGGCCGAC 61.377 60.000 0.00 0.00 32.87 4.79
53 54 1.077716 AAGCAAGTATGGGCCGACC 60.078 57.895 0.00 0.00 40.81 4.79
65 66 2.671070 CCGACCCATCAGGCAAGT 59.329 61.111 0.00 0.00 40.58 3.16
66 67 1.746615 CCGACCCATCAGGCAAGTG 60.747 63.158 0.00 0.00 40.58 3.16
67 68 1.296392 CGACCCATCAGGCAAGTGA 59.704 57.895 0.00 0.00 40.58 3.41
68 69 0.107508 CGACCCATCAGGCAAGTGAT 60.108 55.000 0.00 0.00 40.58 3.06
69 70 1.673168 GACCCATCAGGCAAGTGATC 58.327 55.000 0.00 0.00 40.58 2.92
70 71 0.107508 ACCCATCAGGCAAGTGATCG 60.108 55.000 0.00 0.00 40.58 3.69
71 72 1.442526 CCCATCAGGCAAGTGATCGC 61.443 60.000 0.00 0.00 34.81 4.58
72 73 0.463295 CCATCAGGCAAGTGATCGCT 60.463 55.000 2.02 2.02 34.81 4.93
73 74 0.935898 CATCAGGCAAGTGATCGCTC 59.064 55.000 9.70 0.00 34.81 5.03
74 75 0.529337 ATCAGGCAAGTGATCGCTCG 60.529 55.000 9.70 0.00 31.05 5.03
75 76 2.510238 AGGCAAGTGATCGCTCGC 60.510 61.111 10.82 10.82 0.00 5.03
76 77 3.567797 GGCAAGTGATCGCTCGCC 61.568 66.667 21.83 21.83 32.01 5.54
77 78 2.510238 GCAAGTGATCGCTCGCCT 60.510 61.111 9.70 0.00 32.01 5.52
78 79 1.226974 GCAAGTGATCGCTCGCCTA 60.227 57.895 9.70 0.00 32.01 3.93
79 80 1.211818 GCAAGTGATCGCTCGCCTAG 61.212 60.000 9.70 0.00 32.01 3.02
80 81 0.596083 CAAGTGATCGCTCGCCTAGG 60.596 60.000 9.70 3.67 32.01 3.02
81 82 1.038130 AAGTGATCGCTCGCCTAGGT 61.038 55.000 9.70 0.00 32.01 3.08
82 83 1.008309 GTGATCGCTCGCCTAGGTC 60.008 63.158 11.31 1.66 0.00 3.85
83 84 1.152943 TGATCGCTCGCCTAGGTCT 60.153 57.895 11.31 0.00 0.00 3.85
84 85 1.284408 GATCGCTCGCCTAGGTCTG 59.716 63.158 11.31 0.80 0.00 3.51
85 86 2.741116 GATCGCTCGCCTAGGTCTGC 62.741 65.000 11.31 10.86 0.00 4.26
90 91 2.509336 CGCCTAGGTCTGCGGTTG 60.509 66.667 11.31 0.00 46.65 3.77
91 92 2.978824 GCCTAGGTCTGCGGTTGA 59.021 61.111 11.31 0.00 0.00 3.18
92 93 1.448013 GCCTAGGTCTGCGGTTGAC 60.448 63.158 11.31 0.00 0.00 3.18
93 94 1.889530 GCCTAGGTCTGCGGTTGACT 61.890 60.000 11.31 0.00 35.04 3.41
94 95 0.608640 CCTAGGTCTGCGGTTGACTT 59.391 55.000 0.00 0.00 35.04 3.01
95 96 1.002087 CCTAGGTCTGCGGTTGACTTT 59.998 52.381 0.00 0.00 35.04 2.66
96 97 2.550208 CCTAGGTCTGCGGTTGACTTTT 60.550 50.000 0.00 0.00 35.04 2.27
97 98 2.922740 AGGTCTGCGGTTGACTTTTA 57.077 45.000 0.00 0.00 35.04 1.52
98 99 2.767505 AGGTCTGCGGTTGACTTTTAG 58.232 47.619 0.00 0.00 35.04 1.85
99 100 1.804748 GGTCTGCGGTTGACTTTTAGG 59.195 52.381 0.00 0.00 35.04 2.69
100 101 1.804748 GTCTGCGGTTGACTTTTAGGG 59.195 52.381 0.00 0.00 0.00 3.53
101 102 1.695242 TCTGCGGTTGACTTTTAGGGA 59.305 47.619 0.00 0.00 0.00 4.20
102 103 2.105134 TCTGCGGTTGACTTTTAGGGAA 59.895 45.455 0.00 0.00 0.00 3.97
103 104 2.882137 CTGCGGTTGACTTTTAGGGAAA 59.118 45.455 0.00 0.00 0.00 3.13
104 105 3.288964 TGCGGTTGACTTTTAGGGAAAA 58.711 40.909 0.00 0.00 33.48 2.29
207 208 8.436046 TTCATGAATTTGAAAAAGGTTTGAGG 57.564 30.769 3.38 0.00 32.82 3.86
208 209 7.790027 TCATGAATTTGAAAAAGGTTTGAGGA 58.210 30.769 0.00 0.00 0.00 3.71
209 210 8.431222 TCATGAATTTGAAAAAGGTTTGAGGAT 58.569 29.630 0.00 0.00 0.00 3.24
210 211 9.059260 CATGAATTTGAAAAAGGTTTGAGGATT 57.941 29.630 0.00 0.00 0.00 3.01
211 212 9.631257 ATGAATTTGAAAAAGGTTTGAGGATTT 57.369 25.926 0.00 0.00 0.00 2.17
212 213 8.891720 TGAATTTGAAAAAGGTTTGAGGATTTG 58.108 29.630 0.00 0.00 0.00 2.32
213 214 9.108284 GAATTTGAAAAAGGTTTGAGGATTTGA 57.892 29.630 0.00 0.00 0.00 2.69
214 215 9.460019 AATTTGAAAAAGGTTTGAGGATTTGAA 57.540 25.926 0.00 0.00 0.00 2.69
215 216 8.854614 TTTGAAAAAGGTTTGAGGATTTGAAA 57.145 26.923 0.00 0.00 0.00 2.69
216 217 8.854614 TTGAAAAAGGTTTGAGGATTTGAAAA 57.145 26.923 0.00 0.00 0.00 2.29
217 218 8.854614 TGAAAAAGGTTTGAGGATTTGAAAAA 57.145 26.923 0.00 0.00 0.00 1.94
218 219 8.726068 TGAAAAAGGTTTGAGGATTTGAAAAAC 58.274 29.630 0.00 0.00 0.00 2.43
219 220 8.628630 AAAAAGGTTTGAGGATTTGAAAAACA 57.371 26.923 0.00 0.00 33.42 2.83
220 221 8.628630 AAAAGGTTTGAGGATTTGAAAAACAA 57.371 26.923 0.00 0.00 33.42 2.83
278 279 7.603180 AAGCTTGAAAAGTTTCTAGGGATTT 57.397 32.000 14.31 0.00 44.37 2.17
279 280 8.023021 AAGCTTGAAAAGTTTCTAGGGATTTT 57.977 30.769 14.31 0.00 44.37 1.82
280 281 8.486210 AAGCTTGAAAAGTTTCTAGGGATTTTT 58.514 29.630 14.31 0.00 44.37 1.94
308 309 4.506886 TTTTTGCGGATATGGAAAACGT 57.493 36.364 0.00 0.00 38.61 3.99
309 310 4.506886 TTTTGCGGATATGGAAAACGTT 57.493 36.364 0.00 0.00 34.77 3.99
310 311 3.750639 TTGCGGATATGGAAAACGTTC 57.249 42.857 0.00 0.00 0.00 3.95
311 312 2.701107 TGCGGATATGGAAAACGTTCA 58.299 42.857 0.00 0.00 35.25 3.18
312 313 2.417239 TGCGGATATGGAAAACGTTCAC 59.583 45.455 0.00 0.00 35.25 3.18
313 314 2.676342 GCGGATATGGAAAACGTTCACT 59.324 45.455 0.00 0.00 35.25 3.41
314 315 3.485216 GCGGATATGGAAAACGTTCACTG 60.485 47.826 0.00 0.00 35.25 3.66
315 316 3.930229 CGGATATGGAAAACGTTCACTGA 59.070 43.478 0.00 0.00 35.25 3.41
316 317 4.570772 CGGATATGGAAAACGTTCACTGAT 59.429 41.667 0.00 0.00 35.25 2.90
317 318 5.064707 CGGATATGGAAAACGTTCACTGATT 59.935 40.000 0.00 0.00 35.25 2.57
318 319 6.403200 CGGATATGGAAAACGTTCACTGATTT 60.403 38.462 0.00 0.00 35.25 2.17
319 320 7.312899 GGATATGGAAAACGTTCACTGATTTT 58.687 34.615 0.00 0.00 35.25 1.82
320 321 7.812669 GGATATGGAAAACGTTCACTGATTTTT 59.187 33.333 0.00 0.00 35.25 1.94
340 341 6.567687 TTTTTACAGAGGCGATGAATTTGA 57.432 33.333 0.00 0.00 0.00 2.69
341 342 6.567687 TTTTACAGAGGCGATGAATTTGAA 57.432 33.333 0.00 0.00 0.00 2.69
342 343 6.567687 TTTACAGAGGCGATGAATTTGAAA 57.432 33.333 0.00 0.00 0.00 2.69
343 344 6.567687 TTACAGAGGCGATGAATTTGAAAA 57.432 33.333 0.00 0.00 0.00 2.29
344 345 5.452078 ACAGAGGCGATGAATTTGAAAAA 57.548 34.783 0.00 0.00 0.00 1.94
365 366 7.503521 AAAAAGTTCACAGGCTTTTTGAAAA 57.496 28.000 12.35 0.00 46.62 2.29
366 367 7.503521 AAAAGTTCACAGGCTTTTTGAAAAA 57.496 28.000 2.83 2.83 40.68 1.94
389 390 8.510243 AAAAGGTTCATGAATTTGAAAAAGCT 57.490 26.923 12.12 0.00 37.36 3.74
390 391 7.719778 AAGGTTCATGAATTTGAAAAAGCTC 57.280 32.000 12.12 0.00 37.36 4.09
391 392 6.819284 AGGTTCATGAATTTGAAAAAGCTCA 58.181 32.000 12.12 0.00 37.36 4.26
392 393 7.274447 AGGTTCATGAATTTGAAAAAGCTCAA 58.726 30.769 12.12 0.00 37.36 3.02
393 394 7.440255 AGGTTCATGAATTTGAAAAAGCTCAAG 59.560 33.333 12.12 0.00 37.36 3.02
394 395 7.439056 GGTTCATGAATTTGAAAAAGCTCAAGA 59.561 33.333 12.12 0.00 37.36 3.02
395 396 8.819974 GTTCATGAATTTGAAAAAGCTCAAGAA 58.180 29.630 12.12 0.00 37.36 2.52
396 397 9.550406 TTCATGAATTTGAAAAAGCTCAAGAAT 57.450 25.926 3.38 0.00 36.69 2.40
397 398 8.984764 TCATGAATTTGAAAAAGCTCAAGAATG 58.015 29.630 0.00 0.00 36.69 2.67
398 399 8.770828 CATGAATTTGAAAAAGCTCAAGAATGT 58.229 29.630 0.00 0.00 36.69 2.71
399 400 8.721019 TGAATTTGAAAAAGCTCAAGAATGTT 57.279 26.923 0.00 0.00 36.69 2.71
400 401 9.165035 TGAATTTGAAAAAGCTCAAGAATGTTT 57.835 25.926 0.00 0.00 36.69 2.83
404 405 9.868277 TTTGAAAAAGCTCAAGAATGTTTAGAA 57.132 25.926 0.00 0.00 36.69 2.10
405 406 9.868277 TTGAAAAAGCTCAAGAATGTTTAGAAA 57.132 25.926 0.00 0.00 31.67 2.52
406 407 9.868277 TGAAAAAGCTCAAGAATGTTTAGAAAA 57.132 25.926 0.00 0.00 0.00 2.29
428 429 9.623687 GAAAATCAATTTTGAAAGAAGTTCACG 57.376 29.630 5.50 0.00 46.09 4.35
429 430 6.753897 ATCAATTTTGAAAGAAGTTCACGC 57.246 33.333 5.50 0.00 46.09 5.34
430 431 5.645624 TCAATTTTGAAAGAAGTTCACGCA 58.354 33.333 5.50 0.00 46.09 5.24
431 432 6.272318 TCAATTTTGAAAGAAGTTCACGCAT 58.728 32.000 5.50 0.00 46.09 4.73
432 433 7.421599 TCAATTTTGAAAGAAGTTCACGCATA 58.578 30.769 5.50 0.00 46.09 3.14
433 434 8.081633 TCAATTTTGAAAGAAGTTCACGCATAT 58.918 29.630 5.50 0.00 46.09 1.78
434 435 9.340695 CAATTTTGAAAGAAGTTCACGCATATA 57.659 29.630 5.50 0.00 46.09 0.86
435 436 9.906660 AATTTTGAAAGAAGTTCACGCATATAA 57.093 25.926 5.50 0.00 46.09 0.98
436 437 9.906660 ATTTTGAAAGAAGTTCACGCATATAAA 57.093 25.926 5.50 0.00 46.09 1.40
437 438 9.737427 TTTTGAAAGAAGTTCACGCATATAAAA 57.263 25.926 5.50 0.04 46.09 1.52
438 439 9.737427 TTTGAAAGAAGTTCACGCATATAAAAA 57.263 25.926 5.50 0.00 46.09 1.94
471 472 3.281727 AAAATGGCAGAAGATAGCGGA 57.718 42.857 0.00 0.00 0.00 5.54
472 473 2.246719 AATGGCAGAAGATAGCGGAC 57.753 50.000 0.00 0.00 0.00 4.79
473 474 1.418334 ATGGCAGAAGATAGCGGACT 58.582 50.000 0.00 0.00 0.00 3.85
474 475 2.067365 TGGCAGAAGATAGCGGACTA 57.933 50.000 0.00 0.00 0.00 2.59
475 476 1.681793 TGGCAGAAGATAGCGGACTAC 59.318 52.381 0.00 0.00 0.00 2.73
476 477 1.681793 GGCAGAAGATAGCGGACTACA 59.318 52.381 0.00 0.00 0.00 2.74
477 478 2.287909 GGCAGAAGATAGCGGACTACAG 60.288 54.545 0.00 0.00 0.00 2.74
478 479 2.359531 GCAGAAGATAGCGGACTACAGT 59.640 50.000 0.00 0.00 0.00 3.55
479 480 3.181485 GCAGAAGATAGCGGACTACAGTT 60.181 47.826 0.00 0.00 0.00 3.16
480 481 4.602995 CAGAAGATAGCGGACTACAGTTC 58.397 47.826 0.00 0.00 0.00 3.01
481 482 3.633065 AGAAGATAGCGGACTACAGTTCC 59.367 47.826 0.00 0.00 0.00 3.62
482 483 3.300239 AGATAGCGGACTACAGTTCCT 57.700 47.619 0.00 0.00 0.00 3.36
483 484 4.434545 AGATAGCGGACTACAGTTCCTA 57.565 45.455 0.00 0.00 0.00 2.94
484 485 4.789807 AGATAGCGGACTACAGTTCCTAA 58.210 43.478 0.00 0.00 0.00 2.69
485 486 5.198965 AGATAGCGGACTACAGTTCCTAAA 58.801 41.667 0.00 0.00 0.00 1.85
486 487 5.834204 AGATAGCGGACTACAGTTCCTAAAT 59.166 40.000 0.00 0.00 0.00 1.40
487 488 4.124851 AGCGGACTACAGTTCCTAAATG 57.875 45.455 0.00 0.00 0.00 2.32
488 489 3.767673 AGCGGACTACAGTTCCTAAATGA 59.232 43.478 0.00 0.00 0.00 2.57
489 490 3.864003 GCGGACTACAGTTCCTAAATGAC 59.136 47.826 0.00 0.00 0.00 3.06
490 491 4.430908 CGGACTACAGTTCCTAAATGACC 58.569 47.826 0.00 0.00 0.00 4.02
491 492 4.159879 CGGACTACAGTTCCTAAATGACCT 59.840 45.833 0.00 0.00 0.00 3.85
492 493 5.337330 CGGACTACAGTTCCTAAATGACCTT 60.337 44.000 0.00 0.00 0.00 3.50
493 494 6.473758 GGACTACAGTTCCTAAATGACCTTT 58.526 40.000 0.00 0.00 0.00 3.11
494 495 6.940867 GGACTACAGTTCCTAAATGACCTTTT 59.059 38.462 0.00 0.00 0.00 2.27
495 496 7.447545 GGACTACAGTTCCTAAATGACCTTTTT 59.552 37.037 0.00 0.00 0.00 1.94
512 513 2.389962 TTTTACGGGGTGGAGATTCG 57.610 50.000 0.00 0.00 0.00 3.34
513 514 1.269012 TTTACGGGGTGGAGATTCGT 58.731 50.000 0.00 0.00 37.78 3.85
514 515 0.533491 TTACGGGGTGGAGATTCGTG 59.467 55.000 0.00 0.00 35.60 4.35
515 516 0.323633 TACGGGGTGGAGATTCGTGA 60.324 55.000 0.00 0.00 35.60 4.35
516 517 1.189524 ACGGGGTGGAGATTCGTGAA 61.190 55.000 0.00 0.00 32.60 3.18
517 518 0.178068 CGGGGTGGAGATTCGTGAAT 59.822 55.000 0.00 0.00 0.00 2.57
518 519 1.411246 CGGGGTGGAGATTCGTGAATA 59.589 52.381 0.00 0.00 0.00 1.75
519 520 2.159014 CGGGGTGGAGATTCGTGAATAA 60.159 50.000 0.00 0.00 0.00 1.40
520 521 3.494398 CGGGGTGGAGATTCGTGAATAAT 60.494 47.826 0.00 0.00 0.00 1.28
521 522 3.815401 GGGGTGGAGATTCGTGAATAATG 59.185 47.826 0.00 0.00 0.00 1.90
522 523 4.451900 GGGTGGAGATTCGTGAATAATGT 58.548 43.478 0.00 0.00 0.00 2.71
523 524 4.273480 GGGTGGAGATTCGTGAATAATGTG 59.727 45.833 0.00 0.00 0.00 3.21
524 525 4.273480 GGTGGAGATTCGTGAATAATGTGG 59.727 45.833 0.00 0.00 0.00 4.17
525 526 4.273480 GTGGAGATTCGTGAATAATGTGGG 59.727 45.833 0.00 0.00 0.00 4.61
526 527 3.251004 GGAGATTCGTGAATAATGTGGGC 59.749 47.826 0.00 0.00 0.00 5.36
527 528 3.214328 AGATTCGTGAATAATGTGGGCC 58.786 45.455 0.00 0.00 0.00 5.80
528 529 2.799126 TTCGTGAATAATGTGGGCCT 57.201 45.000 4.53 0.00 0.00 5.19
529 530 2.036958 TCGTGAATAATGTGGGCCTG 57.963 50.000 4.53 0.00 0.00 4.85
530 531 1.280710 TCGTGAATAATGTGGGCCTGT 59.719 47.619 4.53 0.00 0.00 4.00
531 532 1.401552 CGTGAATAATGTGGGCCTGTG 59.598 52.381 4.53 0.00 0.00 3.66
532 533 2.722094 GTGAATAATGTGGGCCTGTGA 58.278 47.619 4.53 0.00 0.00 3.58
533 534 3.290710 GTGAATAATGTGGGCCTGTGAT 58.709 45.455 4.53 0.00 0.00 3.06
534 535 3.067180 GTGAATAATGTGGGCCTGTGATG 59.933 47.826 4.53 0.00 0.00 3.07
535 536 2.369983 ATAATGTGGGCCTGTGATGG 57.630 50.000 4.53 0.00 0.00 3.51
536 537 1.294041 TAATGTGGGCCTGTGATGGA 58.706 50.000 4.53 0.00 0.00 3.41
537 538 0.409092 AATGTGGGCCTGTGATGGAA 59.591 50.000 4.53 0.00 0.00 3.53
538 539 0.323725 ATGTGGGCCTGTGATGGAAC 60.324 55.000 4.53 0.00 0.00 3.62
554 555 2.942376 TGGAACACATGATCGTTATGCC 59.058 45.455 0.00 0.00 0.00 4.40
555 556 3.206150 GGAACACATGATCGTTATGCCT 58.794 45.455 0.00 0.00 0.00 4.75
556 557 3.248602 GGAACACATGATCGTTATGCCTC 59.751 47.826 0.00 0.00 0.00 4.70
557 558 3.827008 ACACATGATCGTTATGCCTCT 57.173 42.857 0.00 0.00 0.00 3.69
558 559 3.461061 ACACATGATCGTTATGCCTCTG 58.539 45.455 0.00 0.00 0.00 3.35
559 560 3.118629 ACACATGATCGTTATGCCTCTGT 60.119 43.478 0.00 0.00 0.00 3.41
560 561 4.099419 ACACATGATCGTTATGCCTCTGTA 59.901 41.667 0.00 0.00 0.00 2.74
561 562 5.221521 ACACATGATCGTTATGCCTCTGTAT 60.222 40.000 0.00 0.00 0.00 2.29
562 563 5.119743 CACATGATCGTTATGCCTCTGTATG 59.880 44.000 0.00 0.00 0.00 2.39
563 564 4.257267 TGATCGTTATGCCTCTGTATGG 57.743 45.455 0.00 0.00 0.00 2.74
564 565 3.641436 TGATCGTTATGCCTCTGTATGGT 59.359 43.478 0.00 0.00 0.00 3.55
565 566 4.830600 TGATCGTTATGCCTCTGTATGGTA 59.169 41.667 0.00 0.00 0.00 3.25
566 567 4.848562 TCGTTATGCCTCTGTATGGTAG 57.151 45.455 0.00 0.00 0.00 3.18
567 568 3.572682 TCGTTATGCCTCTGTATGGTAGG 59.427 47.826 0.00 0.00 0.00 3.18
571 572 3.967886 CCTCTGTATGGTAGGCACG 57.032 57.895 0.00 0.00 0.00 5.34
572 573 0.389391 CCTCTGTATGGTAGGCACGG 59.611 60.000 0.00 0.00 0.00 4.94
573 574 0.249489 CTCTGTATGGTAGGCACGGC 60.249 60.000 0.00 0.00 0.00 5.68
583 584 3.199891 GGCACGGCCCGTTATGAC 61.200 66.667 5.76 0.00 44.06 3.06
595 596 1.531912 GTTATGACGACACTCCGACG 58.468 55.000 0.00 0.00 38.79 5.12
596 597 1.129251 GTTATGACGACACTCCGACGA 59.871 52.381 0.00 0.00 36.58 4.20
597 598 1.004595 TATGACGACACTCCGACGAG 58.995 55.000 0.00 0.00 42.32 4.18
598 599 2.202324 GACGACACTCCGACGAGC 60.202 66.667 0.00 0.00 40.03 5.03
599 600 3.664223 GACGACACTCCGACGAGCC 62.664 68.421 0.00 0.00 40.03 4.70
600 601 3.432588 CGACACTCCGACGAGCCT 61.433 66.667 0.00 0.00 40.03 4.58
601 602 2.486042 GACACTCCGACGAGCCTC 59.514 66.667 0.00 0.00 40.03 4.70
602 603 2.282251 ACACTCCGACGAGCCTCA 60.282 61.111 0.00 0.00 40.03 3.86
603 604 1.863662 GACACTCCGACGAGCCTCAA 61.864 60.000 0.00 0.00 40.03 3.02
604 605 1.289066 CACTCCGACGAGCCTCAAA 59.711 57.895 0.00 0.00 40.03 2.69
605 606 0.319555 CACTCCGACGAGCCTCAAAA 60.320 55.000 0.00 0.00 40.03 2.44
606 607 0.319641 ACTCCGACGAGCCTCAAAAC 60.320 55.000 0.00 0.00 40.03 2.43
607 608 0.319555 CTCCGACGAGCCTCAAAACA 60.320 55.000 0.00 0.00 0.00 2.83
608 609 0.105224 TCCGACGAGCCTCAAAACAA 59.895 50.000 0.00 0.00 0.00 2.83
609 610 0.512952 CCGACGAGCCTCAAAACAAG 59.487 55.000 0.00 0.00 0.00 3.16
610 611 1.217882 CGACGAGCCTCAAAACAAGT 58.782 50.000 0.00 0.00 0.00 3.16
611 612 1.192534 CGACGAGCCTCAAAACAAGTC 59.807 52.381 0.00 0.00 0.00 3.01
612 613 1.531578 GACGAGCCTCAAAACAAGTCC 59.468 52.381 0.00 0.00 0.00 3.85
613 614 1.134220 ACGAGCCTCAAAACAAGTCCA 60.134 47.619 0.00 0.00 0.00 4.02
614 615 1.946768 CGAGCCTCAAAACAAGTCCAA 59.053 47.619 0.00 0.00 0.00 3.53
615 616 2.031682 CGAGCCTCAAAACAAGTCCAAG 60.032 50.000 0.00 0.00 0.00 3.61
616 617 2.952310 GAGCCTCAAAACAAGTCCAAGT 59.048 45.455 0.00 0.00 0.00 3.16
617 618 2.689983 AGCCTCAAAACAAGTCCAAGTG 59.310 45.455 0.00 0.00 0.00 3.16
618 619 2.799562 GCCTCAAAACAAGTCCAAGTGC 60.800 50.000 0.00 0.00 0.00 4.40
619 620 2.426738 CCTCAAAACAAGTCCAAGTGCA 59.573 45.455 0.00 0.00 0.00 4.57
620 621 3.068590 CCTCAAAACAAGTCCAAGTGCAT 59.931 43.478 0.00 0.00 0.00 3.96
621 622 4.278170 CCTCAAAACAAGTCCAAGTGCATA 59.722 41.667 0.00 0.00 0.00 3.14
622 623 5.047802 CCTCAAAACAAGTCCAAGTGCATAT 60.048 40.000 0.00 0.00 0.00 1.78
623 624 6.150976 CCTCAAAACAAGTCCAAGTGCATATA 59.849 38.462 0.00 0.00 0.00 0.86
624 625 6.908825 TCAAAACAAGTCCAAGTGCATATAC 58.091 36.000 0.00 0.00 0.00 1.47
625 626 5.897377 AAACAAGTCCAAGTGCATATACC 57.103 39.130 0.00 0.00 0.00 2.73
626 627 3.531538 ACAAGTCCAAGTGCATATACCG 58.468 45.455 0.00 0.00 0.00 4.02
627 628 3.196901 ACAAGTCCAAGTGCATATACCGA 59.803 43.478 0.00 0.00 0.00 4.69
628 629 4.188462 CAAGTCCAAGTGCATATACCGAA 58.812 43.478 0.00 0.00 0.00 4.30
629 630 4.060038 AGTCCAAGTGCATATACCGAAG 57.940 45.455 0.00 0.00 0.00 3.79
630 631 2.544267 GTCCAAGTGCATATACCGAAGC 59.456 50.000 0.00 0.00 0.00 3.86
631 632 1.873591 CCAAGTGCATATACCGAAGCC 59.126 52.381 0.00 0.00 0.00 4.35
632 633 1.873591 CAAGTGCATATACCGAAGCCC 59.126 52.381 0.00 0.00 0.00 5.19
633 634 1.128200 AGTGCATATACCGAAGCCCA 58.872 50.000 0.00 0.00 0.00 5.36
634 635 1.202651 AGTGCATATACCGAAGCCCAC 60.203 52.381 0.00 0.00 0.00 4.61
635 636 1.128200 TGCATATACCGAAGCCCACT 58.872 50.000 0.00 0.00 0.00 4.00
636 637 1.488812 TGCATATACCGAAGCCCACTT 59.511 47.619 0.00 0.00 39.43 3.16
646 647 2.796557 GAAGCCCACTTCCTTAAAGCT 58.203 47.619 0.00 0.00 45.60 3.74
647 648 3.951663 GAAGCCCACTTCCTTAAAGCTA 58.048 45.455 0.00 0.00 45.60 3.32
648 649 4.332828 GAAGCCCACTTCCTTAAAGCTAA 58.667 43.478 0.00 0.00 45.60 3.09
649 650 4.382386 AGCCCACTTCCTTAAAGCTAAA 57.618 40.909 0.00 0.00 38.67 1.85
650 651 4.736473 AGCCCACTTCCTTAAAGCTAAAA 58.264 39.130 0.00 0.00 38.67 1.52
651 652 5.333581 AGCCCACTTCCTTAAAGCTAAAAT 58.666 37.500 0.00 0.00 38.67 1.82
652 653 5.780282 AGCCCACTTCCTTAAAGCTAAAATT 59.220 36.000 0.00 0.00 38.67 1.82
653 654 6.951778 AGCCCACTTCCTTAAAGCTAAAATTA 59.048 34.615 0.00 0.00 38.67 1.40
654 655 7.122799 AGCCCACTTCCTTAAAGCTAAAATTAG 59.877 37.037 0.00 0.00 38.67 1.73
655 656 7.630728 GCCCACTTCCTTAAAGCTAAAATTAGG 60.631 40.741 2.61 0.00 38.67 2.69
656 657 7.614192 CCCACTTCCTTAAAGCTAAAATTAGGA 59.386 37.037 2.61 0.00 38.67 2.94
657 658 8.678199 CCACTTCCTTAAAGCTAAAATTAGGAG 58.322 37.037 2.61 0.00 38.67 3.69
658 659 9.232473 CACTTCCTTAAAGCTAAAATTAGGAGT 57.768 33.333 2.61 0.00 38.67 3.85
666 667 8.611654 AAAGCTAAAATTAGGAGTAAACGTGA 57.388 30.769 0.00 0.00 0.00 4.35
678 679 4.079253 AGTAAACGTGAAATGAGCCCATT 58.921 39.130 0.00 0.00 44.38 3.16
702 703 2.000447 GTACGTGCCAGTTGATCTTCC 59.000 52.381 0.00 0.00 0.00 3.46
704 705 1.072331 ACGTGCCAGTTGATCTTCCTT 59.928 47.619 0.00 0.00 0.00 3.36
705 706 1.466167 CGTGCCAGTTGATCTTCCTTG 59.534 52.381 0.00 0.00 0.00 3.61
722 723 6.948309 TCTTCCTTGAAGCTAAAATTAGGCTT 59.052 34.615 10.76 10.76 39.29 4.35
727 728 1.064060 AGCTAAAATTAGGCTTGCGCG 59.936 47.619 0.00 0.00 36.88 6.86
743 749 2.090524 GCGCCAGTTGCAGAAATGC 61.091 57.895 0.00 0.00 41.33 3.56
758 764 1.426041 AATGCCGCGTACGATGGTTC 61.426 55.000 21.65 8.37 43.93 3.62
764 770 1.266786 GCGTACGATGGTTCCGATCG 61.267 60.000 21.65 8.51 46.55 3.69
765 771 0.659417 CGTACGATGGTTCCGATCGG 60.659 60.000 28.62 28.62 45.64 4.18
889 895 3.899545 TTCCCCCGCGTCTCCTCTT 62.900 63.158 4.92 0.00 0.00 2.85
1098 1126 2.490148 CGGCGAGCAGGACTCCATA 61.490 63.158 0.00 0.00 43.01 2.74
1472 1502 0.373024 CGTACGAACGGAGAGGAGAC 59.627 60.000 10.44 0.00 45.50 3.36
1541 1574 6.424509 TGCTTCAACATTGATCCAACAAAATC 59.575 34.615 0.00 0.00 37.00 2.17
1623 1666 4.405116 TGCCATGCCAATTTATTCCTTC 57.595 40.909 0.00 0.00 0.00 3.46
1723 1793 9.878667 TCATAAACGAGTTAGAATTTGTGGATA 57.121 29.630 0.00 0.00 0.00 2.59
1785 1863 2.479656 GGCGACATAACAACACCGTTTA 59.520 45.455 0.00 0.00 0.00 2.01
1795 1873 3.504520 ACAACACCGTTTATGGTCATTCC 59.495 43.478 0.00 0.00 41.38 3.01
1809 1887 2.878406 GTCATTCCCATCATGGTTACCG 59.122 50.000 2.07 0.00 35.17 4.02
1847 1925 6.777526 TTTTTGGCAATTTCTATTTGACGG 57.222 33.333 0.00 0.00 34.70 4.79
1852 1930 5.095490 GGCAATTTCTATTTGACGGTTCAG 58.905 41.667 0.00 0.00 31.71 3.02
1854 1932 5.640732 CAATTTCTATTTGACGGTTCAGGG 58.359 41.667 0.00 0.00 31.71 4.45
1855 1933 4.360951 TTTCTATTTGACGGTTCAGGGT 57.639 40.909 0.00 0.00 31.71 4.34
1857 1935 2.235402 TCTATTTGACGGTTCAGGGTCC 59.765 50.000 0.00 0.00 31.71 4.46
1865 1944 1.068127 CGGTTCAGGGTCCGTTATAGG 59.932 57.143 0.00 0.00 41.58 2.57
1866 1945 1.202615 GGTTCAGGGTCCGTTATAGGC 60.203 57.143 0.00 0.00 0.00 3.93
1871 1950 2.132686 AGGGTCCGTTATAGGCCATTT 58.867 47.619 5.01 0.00 31.78 2.32
1884 1963 1.525941 GCCATTTTGCAAACAGGCAT 58.474 45.000 33.15 15.73 44.48 4.40
1885 1964 2.614987 GGCCATTTTGCAAACAGGCATA 60.615 45.455 35.95 15.63 44.48 3.14
1886 1965 2.674357 GCCATTTTGCAAACAGGCATAG 59.326 45.455 33.15 13.23 44.48 2.23
1887 1966 3.264104 CCATTTTGCAAACAGGCATAGG 58.736 45.455 12.39 3.62 44.48 2.57
1892 1971 1.176527 GCAAACAGGCATAGGAAGCA 58.823 50.000 0.00 0.00 0.00 3.91
1897 1976 1.073763 ACAGGCATAGGAAGCACACAA 59.926 47.619 0.00 0.00 0.00 3.33
1898 1977 1.470098 CAGGCATAGGAAGCACACAAC 59.530 52.381 0.00 0.00 0.00 3.32
1900 1979 1.533625 GCATAGGAAGCACACAACCA 58.466 50.000 0.00 0.00 0.00 3.67
1903 1982 3.149196 CATAGGAAGCACACAACCACTT 58.851 45.455 0.00 0.00 0.00 3.16
1912 1991 2.664851 CAACCACTTCCGCGAGCA 60.665 61.111 8.23 0.00 0.00 4.26
1913 1992 2.110213 AACCACTTCCGCGAGCAA 59.890 55.556 8.23 0.00 0.00 3.91
1914 1993 1.302511 AACCACTTCCGCGAGCAAT 60.303 52.632 8.23 0.00 0.00 3.56
1927 2006 4.371590 GCAATGCCGGCCCGTTTT 62.372 61.111 26.77 6.92 0.00 2.43
1928 2007 2.126110 CAATGCCGGCCCGTTTTC 60.126 61.111 26.77 0.00 0.00 2.29
1929 2008 2.598985 AATGCCGGCCCGTTTTCA 60.599 55.556 26.77 1.65 0.00 2.69
1937 2022 0.875059 GGCCCGTTTTCACTTCTCTG 59.125 55.000 0.00 0.00 0.00 3.35
1941 2026 3.548214 GCCCGTTTTCACTTCTCTGTTTC 60.548 47.826 0.00 0.00 0.00 2.78
1984 2070 4.385358 ACAAACTGTGATTCAAACCCAC 57.615 40.909 0.00 0.00 0.00 4.61
1985 2071 3.181491 ACAAACTGTGATTCAAACCCACG 60.181 43.478 0.00 0.00 33.78 4.94
1997 2083 2.660552 CCCACGACGTGCGAGTTT 60.661 61.111 22.46 0.00 44.57 2.66
1998 2084 2.654912 CCCACGACGTGCGAGTTTC 61.655 63.158 22.46 0.00 44.57 2.78
1999 2085 1.947146 CCACGACGTGCGAGTTTCA 60.947 57.895 22.46 0.00 44.57 2.69
2001 2087 0.506932 CACGACGTGCGAGTTTCATT 59.493 50.000 16.06 0.00 44.57 2.57
2035 2121 1.151899 ACCCAGCCACCTCACCTTA 60.152 57.895 0.00 0.00 0.00 2.69
2038 2124 1.408822 CCCAGCCACCTCACCTTAATC 60.409 57.143 0.00 0.00 0.00 1.75
2143 2235 4.577834 TTTTTCCCTTTTCTACTTGGCG 57.422 40.909 0.00 0.00 0.00 5.69
2154 2246 6.445357 TTTCTACTTGGCGAACTTTTTCTT 57.555 33.333 0.00 0.00 0.00 2.52
2158 2250 5.262588 ACTTGGCGAACTTTTTCTTCAAT 57.737 34.783 0.00 0.00 0.00 2.57
2161 2253 4.606961 TGGCGAACTTTTTCTTCAATCAC 58.393 39.130 0.00 0.00 0.00 3.06
2164 2256 6.016693 TGGCGAACTTTTTCTTCAATCACATA 60.017 34.615 0.00 0.00 0.00 2.29
2166 2258 7.542130 GGCGAACTTTTTCTTCAATCACATAAT 59.458 33.333 0.00 0.00 0.00 1.28
2167 2259 8.915654 GCGAACTTTTTCTTCAATCACATAATT 58.084 29.630 0.00 0.00 0.00 1.40
2205 2304 8.274939 TGCAAGAAAATTTTCAATTCGATGAAC 58.725 29.630 28.00 8.26 38.95 3.18
2206 2305 8.490355 GCAAGAAAATTTTCAATTCGATGAACT 58.510 29.630 28.00 4.51 38.95 3.01
2372 2493 6.639671 TTTCAAATTTGTGAACCACTTTCG 57.360 33.333 17.47 0.00 37.24 3.46
2376 2497 7.038659 TCAAATTTGTGAACCACTTTCGAAAT 58.961 30.769 17.47 0.00 36.97 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.864334 GCCAGATGCCCTGACCGG 62.864 72.222 0.00 0.00 45.78 5.28
24 25 3.673484 CTTGCTTGGTGGTGGGCG 61.673 66.667 0.00 0.00 0.00 6.13
25 26 0.611896 ATACTTGCTTGGTGGTGGGC 60.612 55.000 0.00 0.00 0.00 5.36
26 27 1.176527 CATACTTGCTTGGTGGTGGG 58.823 55.000 0.00 0.00 0.00 4.61
27 28 1.176527 CCATACTTGCTTGGTGGTGG 58.823 55.000 0.00 0.00 0.00 4.61
28 29 1.176527 CCCATACTTGCTTGGTGGTG 58.823 55.000 0.00 0.00 0.00 4.17
29 30 0.611896 GCCCATACTTGCTTGGTGGT 60.612 55.000 0.00 0.00 0.00 4.16
30 31 1.322538 GGCCCATACTTGCTTGGTGG 61.323 60.000 0.00 0.00 0.00 4.61
31 32 1.656818 CGGCCCATACTTGCTTGGTG 61.657 60.000 0.00 0.00 0.00 4.17
32 33 1.378514 CGGCCCATACTTGCTTGGT 60.379 57.895 0.00 0.00 0.00 3.67
33 34 1.077787 TCGGCCCATACTTGCTTGG 60.078 57.895 0.00 0.00 0.00 3.61
34 35 1.376609 GGTCGGCCCATACTTGCTTG 61.377 60.000 0.00 0.00 0.00 4.01
35 36 1.077716 GGTCGGCCCATACTTGCTT 60.078 57.895 0.00 0.00 0.00 3.91
36 37 2.590092 GGTCGGCCCATACTTGCT 59.410 61.111 0.00 0.00 0.00 3.91
46 47 4.424711 TTGCCTGATGGGTCGGCC 62.425 66.667 0.00 0.00 40.77 6.13
47 48 2.825836 CTTGCCTGATGGGTCGGC 60.826 66.667 0.00 0.00 41.39 5.54
48 49 1.746615 CACTTGCCTGATGGGTCGG 60.747 63.158 0.00 0.00 37.43 4.79
49 50 0.107508 ATCACTTGCCTGATGGGTCG 60.108 55.000 0.00 0.00 37.43 4.79
50 51 1.673168 GATCACTTGCCTGATGGGTC 58.327 55.000 0.00 0.00 37.43 4.46
51 52 0.107508 CGATCACTTGCCTGATGGGT 60.108 55.000 0.00 0.00 37.43 4.51
52 53 1.442526 GCGATCACTTGCCTGATGGG 61.443 60.000 0.00 0.00 30.62 4.00
53 54 0.463295 AGCGATCACTTGCCTGATGG 60.463 55.000 0.00 0.00 30.62 3.51
54 55 0.935898 GAGCGATCACTTGCCTGATG 59.064 55.000 0.00 0.00 30.62 3.07
55 56 0.529337 CGAGCGATCACTTGCCTGAT 60.529 55.000 0.00 0.00 33.32 2.90
56 57 1.153765 CGAGCGATCACTTGCCTGA 60.154 57.895 0.00 0.00 31.47 3.86
57 58 2.806856 GCGAGCGATCACTTGCCTG 61.807 63.158 11.34 0.00 40.62 4.85
58 59 2.510238 GCGAGCGATCACTTGCCT 60.510 61.111 11.34 0.00 40.62 4.75
60 61 1.211818 CTAGGCGAGCGATCACTTGC 61.212 60.000 13.68 13.68 44.96 4.01
61 62 0.596083 CCTAGGCGAGCGATCACTTG 60.596 60.000 0.00 0.00 0.00 3.16
62 63 1.038130 ACCTAGGCGAGCGATCACTT 61.038 55.000 9.30 0.00 0.00 3.16
63 64 1.448922 GACCTAGGCGAGCGATCACT 61.449 60.000 9.30 0.25 0.00 3.41
64 65 1.008309 GACCTAGGCGAGCGATCAC 60.008 63.158 9.30 0.00 0.00 3.06
65 66 1.152943 AGACCTAGGCGAGCGATCA 60.153 57.895 9.30 0.00 0.00 2.92
66 67 1.284408 CAGACCTAGGCGAGCGATC 59.716 63.158 9.30 0.00 0.00 3.69
67 68 2.851071 GCAGACCTAGGCGAGCGAT 61.851 63.158 9.30 0.00 0.00 4.58
68 69 3.518998 GCAGACCTAGGCGAGCGA 61.519 66.667 9.30 0.00 0.00 4.93
74 75 1.448013 GTCAACCGCAGACCTAGGC 60.448 63.158 9.30 1.39 0.00 3.93
75 76 0.608640 AAGTCAACCGCAGACCTAGG 59.391 55.000 7.41 7.41 36.68 3.02
76 77 2.457366 AAAGTCAACCGCAGACCTAG 57.543 50.000 0.00 0.00 36.68 3.02
77 78 2.922740 AAAAGTCAACCGCAGACCTA 57.077 45.000 0.00 0.00 36.68 3.08
78 79 2.550208 CCTAAAAGTCAACCGCAGACCT 60.550 50.000 0.00 0.00 36.68 3.85
79 80 1.804748 CCTAAAAGTCAACCGCAGACC 59.195 52.381 0.00 0.00 36.68 3.85
80 81 1.804748 CCCTAAAAGTCAACCGCAGAC 59.195 52.381 0.00 0.00 36.26 3.51
81 82 1.695242 TCCCTAAAAGTCAACCGCAGA 59.305 47.619 0.00 0.00 0.00 4.26
82 83 2.178912 TCCCTAAAAGTCAACCGCAG 57.821 50.000 0.00 0.00 0.00 5.18
83 84 2.642154 TTCCCTAAAAGTCAACCGCA 57.358 45.000 0.00 0.00 0.00 5.69
84 85 3.897325 CTTTTCCCTAAAAGTCAACCGC 58.103 45.455 3.06 0.00 44.36 5.68
181 182 8.891720 CCTCAAACCTTTTTCAAATTCATGAAA 58.108 29.630 13.09 1.91 45.07 2.69
182 183 8.263640 TCCTCAAACCTTTTTCAAATTCATGAA 58.736 29.630 11.26 11.26 37.53 2.57
183 184 7.790027 TCCTCAAACCTTTTTCAAATTCATGA 58.210 30.769 0.00 0.00 0.00 3.07
184 185 8.611654 ATCCTCAAACCTTTTTCAAATTCATG 57.388 30.769 0.00 0.00 0.00 3.07
185 186 9.631257 AAATCCTCAAACCTTTTTCAAATTCAT 57.369 25.926 0.00 0.00 0.00 2.57
186 187 8.891720 CAAATCCTCAAACCTTTTTCAAATTCA 58.108 29.630 0.00 0.00 0.00 2.57
187 188 9.108284 TCAAATCCTCAAACCTTTTTCAAATTC 57.892 29.630 0.00 0.00 0.00 2.17
188 189 9.460019 TTCAAATCCTCAAACCTTTTTCAAATT 57.540 25.926 0.00 0.00 0.00 1.82
189 190 9.460019 TTTCAAATCCTCAAACCTTTTTCAAAT 57.540 25.926 0.00 0.00 0.00 2.32
190 191 8.854614 TTTCAAATCCTCAAACCTTTTTCAAA 57.145 26.923 0.00 0.00 0.00 2.69
191 192 8.854614 TTTTCAAATCCTCAAACCTTTTTCAA 57.145 26.923 0.00 0.00 0.00 2.69
192 193 8.726068 GTTTTTCAAATCCTCAAACCTTTTTCA 58.274 29.630 0.00 0.00 0.00 2.69
193 194 8.726068 TGTTTTTCAAATCCTCAAACCTTTTTC 58.274 29.630 0.00 0.00 0.00 2.29
194 195 8.628630 TGTTTTTCAAATCCTCAAACCTTTTT 57.371 26.923 0.00 0.00 0.00 1.94
195 196 8.628630 TTGTTTTTCAAATCCTCAAACCTTTT 57.371 26.923 0.00 0.00 32.64 2.27
196 197 8.628630 TTTGTTTTTCAAATCCTCAAACCTTT 57.371 26.923 0.00 0.00 40.56 3.11
197 198 8.628630 TTTTGTTTTTCAAATCCTCAAACCTT 57.371 26.923 0.00 0.00 44.15 3.50
198 199 8.628630 TTTTTGTTTTTCAAATCCTCAAACCT 57.371 26.923 0.00 0.00 44.15 3.50
251 252 7.418337 TCCCTAGAAACTTTTCAAGCTTTTT 57.582 32.000 0.00 0.00 39.61 1.94
252 253 7.603180 ATCCCTAGAAACTTTTCAAGCTTTT 57.397 32.000 0.00 0.00 39.61 2.27
253 254 7.603180 AATCCCTAGAAACTTTTCAAGCTTT 57.397 32.000 0.00 0.00 39.61 3.51
254 255 7.603180 AAATCCCTAGAAACTTTTCAAGCTT 57.397 32.000 0.00 0.00 39.61 3.74
255 256 7.603180 AAAATCCCTAGAAACTTTTCAAGCT 57.397 32.000 4.58 0.00 39.61 3.74
287 288 4.506886 ACGTTTTCCATATCCGCAAAAA 57.493 36.364 0.00 0.00 0.00 1.94
288 289 4.023107 TGAACGTTTTCCATATCCGCAAAA 60.023 37.500 0.46 0.00 0.00 2.44
289 290 3.502595 TGAACGTTTTCCATATCCGCAAA 59.497 39.130 0.46 0.00 0.00 3.68
290 291 3.075148 TGAACGTTTTCCATATCCGCAA 58.925 40.909 0.46 0.00 0.00 4.85
291 292 2.417239 GTGAACGTTTTCCATATCCGCA 59.583 45.455 0.46 0.00 0.00 5.69
292 293 2.676342 AGTGAACGTTTTCCATATCCGC 59.324 45.455 0.46 0.00 0.00 5.54
293 294 3.930229 TCAGTGAACGTTTTCCATATCCG 59.070 43.478 0.46 0.00 0.00 4.18
294 295 6.436843 AATCAGTGAACGTTTTCCATATCC 57.563 37.500 0.46 0.00 0.00 2.59
295 296 8.742554 AAAAATCAGTGAACGTTTTCCATATC 57.257 30.769 0.46 0.00 0.00 1.63
317 318 6.567687 TCAAATTCATCGCCTCTGTAAAAA 57.432 33.333 0.00 0.00 0.00 1.94
318 319 6.567687 TTCAAATTCATCGCCTCTGTAAAA 57.432 33.333 0.00 0.00 0.00 1.52
319 320 6.567687 TTTCAAATTCATCGCCTCTGTAAA 57.432 33.333 0.00 0.00 0.00 2.01
320 321 6.567687 TTTTCAAATTCATCGCCTCTGTAA 57.432 33.333 0.00 0.00 0.00 2.41
321 322 6.567687 TTTTTCAAATTCATCGCCTCTGTA 57.432 33.333 0.00 0.00 0.00 2.74
322 323 5.452078 TTTTTCAAATTCATCGCCTCTGT 57.548 34.783 0.00 0.00 0.00 3.41
342 343 7.503521 TTTTTCAAAAAGCCTGTGAACTTTT 57.496 28.000 0.00 0.00 45.53 2.27
363 364 8.959548 AGCTTTTTCAAATTCATGAACCTTTTT 58.040 25.926 11.07 4.59 38.95 1.94
364 365 8.510243 AGCTTTTTCAAATTCATGAACCTTTT 57.490 26.923 11.07 4.97 38.95 2.27
365 366 7.769970 TGAGCTTTTTCAAATTCATGAACCTTT 59.230 29.630 11.07 5.74 38.95 3.11
366 367 7.274447 TGAGCTTTTTCAAATTCATGAACCTT 58.726 30.769 11.07 4.52 38.95 3.50
367 368 6.819284 TGAGCTTTTTCAAATTCATGAACCT 58.181 32.000 11.07 0.00 38.95 3.50
368 369 7.439056 TCTTGAGCTTTTTCAAATTCATGAACC 59.561 33.333 11.07 0.00 38.95 3.62
369 370 8.356533 TCTTGAGCTTTTTCAAATTCATGAAC 57.643 30.769 11.07 0.00 38.95 3.18
370 371 8.945481 TTCTTGAGCTTTTTCAAATTCATGAA 57.055 26.923 11.26 11.26 36.69 2.57
371 372 8.984764 CATTCTTGAGCTTTTTCAAATTCATGA 58.015 29.630 0.00 0.00 36.69 3.07
372 373 8.770828 ACATTCTTGAGCTTTTTCAAATTCATG 58.229 29.630 0.00 0.00 36.69 3.07
373 374 8.897872 ACATTCTTGAGCTTTTTCAAATTCAT 57.102 26.923 0.00 0.00 36.69 2.57
374 375 8.721019 AACATTCTTGAGCTTTTTCAAATTCA 57.279 26.923 0.00 0.00 36.69 2.57
378 379 9.868277 TTCTAAACATTCTTGAGCTTTTTCAAA 57.132 25.926 0.00 0.00 36.69 2.69
379 380 9.868277 TTTCTAAACATTCTTGAGCTTTTTCAA 57.132 25.926 0.00 0.00 35.83 2.69
380 381 9.868277 TTTTCTAAACATTCTTGAGCTTTTTCA 57.132 25.926 0.00 0.00 0.00 2.69
402 403 9.623687 CGTGAACTTCTTTCAAAATTGATTTTC 57.376 29.630 0.00 0.00 46.09 2.29
403 404 8.116136 GCGTGAACTTCTTTCAAAATTGATTTT 58.884 29.630 0.00 0.00 46.09 1.82
404 405 7.277539 TGCGTGAACTTCTTTCAAAATTGATTT 59.722 29.630 0.00 0.00 46.09 2.17
405 406 6.756074 TGCGTGAACTTCTTTCAAAATTGATT 59.244 30.769 0.00 0.00 46.09 2.57
406 407 6.272318 TGCGTGAACTTCTTTCAAAATTGAT 58.728 32.000 0.00 0.00 46.09 2.57
407 408 5.645624 TGCGTGAACTTCTTTCAAAATTGA 58.354 33.333 0.00 0.00 46.09 2.57
408 409 5.947503 TGCGTGAACTTCTTTCAAAATTG 57.052 34.783 0.00 0.00 46.09 2.32
409 410 9.906660 TTATATGCGTGAACTTCTTTCAAAATT 57.093 25.926 0.00 0.00 46.09 1.82
410 411 9.906660 TTTATATGCGTGAACTTCTTTCAAAAT 57.093 25.926 0.00 0.00 46.09 1.82
411 412 9.737427 TTTTATATGCGTGAACTTCTTTCAAAA 57.263 25.926 0.00 0.00 46.09 2.44
412 413 9.737427 TTTTTATATGCGTGAACTTCTTTCAAA 57.263 25.926 0.00 0.00 46.09 2.69
450 451 3.378427 GTCCGCTATCTTCTGCCATTTTT 59.622 43.478 0.00 0.00 0.00 1.94
451 452 2.945668 GTCCGCTATCTTCTGCCATTTT 59.054 45.455 0.00 0.00 0.00 1.82
452 453 2.171448 AGTCCGCTATCTTCTGCCATTT 59.829 45.455 0.00 0.00 0.00 2.32
453 454 1.765314 AGTCCGCTATCTTCTGCCATT 59.235 47.619 0.00 0.00 0.00 3.16
454 455 1.418334 AGTCCGCTATCTTCTGCCAT 58.582 50.000 0.00 0.00 0.00 4.40
455 456 1.681793 GTAGTCCGCTATCTTCTGCCA 59.318 52.381 0.00 0.00 0.00 4.92
456 457 1.681793 TGTAGTCCGCTATCTTCTGCC 59.318 52.381 0.00 0.00 0.00 4.85
457 458 2.359531 ACTGTAGTCCGCTATCTTCTGC 59.640 50.000 0.00 0.00 0.00 4.26
458 459 4.498345 GGAACTGTAGTCCGCTATCTTCTG 60.498 50.000 0.00 0.00 0.00 3.02
459 460 3.633065 GGAACTGTAGTCCGCTATCTTCT 59.367 47.826 0.00 0.00 0.00 2.85
460 461 3.633065 AGGAACTGTAGTCCGCTATCTTC 59.367 47.826 0.00 0.00 37.18 2.87
461 462 3.633418 AGGAACTGTAGTCCGCTATCTT 58.367 45.455 0.00 0.00 37.18 2.40
462 463 3.300239 AGGAACTGTAGTCCGCTATCT 57.700 47.619 0.00 0.00 37.18 1.98
463 464 5.511234 TTTAGGAACTGTAGTCCGCTATC 57.489 43.478 0.00 0.00 41.52 2.08
464 465 5.597182 TCATTTAGGAACTGTAGTCCGCTAT 59.403 40.000 0.00 0.00 41.52 2.97
465 466 4.951715 TCATTTAGGAACTGTAGTCCGCTA 59.048 41.667 0.00 0.00 41.52 4.26
466 467 3.767673 TCATTTAGGAACTGTAGTCCGCT 59.232 43.478 0.00 0.00 41.52 5.52
467 468 3.864003 GTCATTTAGGAACTGTAGTCCGC 59.136 47.826 0.00 0.00 41.52 5.54
468 469 4.159879 AGGTCATTTAGGAACTGTAGTCCG 59.840 45.833 0.00 0.00 41.52 4.79
469 470 5.678955 AGGTCATTTAGGAACTGTAGTCC 57.321 43.478 0.00 0.00 41.52 3.85
470 471 7.981102 AAAAGGTCATTTAGGAACTGTAGTC 57.019 36.000 0.00 0.00 41.52 2.59
492 493 2.038820 ACGAATCTCCACCCCGTAAAAA 59.961 45.455 0.00 0.00 0.00 1.94
493 494 1.624813 ACGAATCTCCACCCCGTAAAA 59.375 47.619 0.00 0.00 0.00 1.52
494 495 1.066716 CACGAATCTCCACCCCGTAAA 60.067 52.381 0.00 0.00 31.83 2.01
495 496 0.533491 CACGAATCTCCACCCCGTAA 59.467 55.000 0.00 0.00 31.83 3.18
496 497 0.323633 TCACGAATCTCCACCCCGTA 60.324 55.000 0.00 0.00 31.83 4.02
497 498 1.189524 TTCACGAATCTCCACCCCGT 61.190 55.000 0.00 0.00 0.00 5.28
498 499 0.178068 ATTCACGAATCTCCACCCCG 59.822 55.000 0.00 0.00 0.00 5.73
499 500 3.553828 TTATTCACGAATCTCCACCCC 57.446 47.619 0.00 0.00 32.50 4.95
500 501 4.273480 CACATTATTCACGAATCTCCACCC 59.727 45.833 0.00 0.00 32.50 4.61
501 502 4.273480 CCACATTATTCACGAATCTCCACC 59.727 45.833 0.00 0.00 32.50 4.61
502 503 4.273480 CCCACATTATTCACGAATCTCCAC 59.727 45.833 0.00 0.00 32.50 4.02
503 504 4.450976 CCCACATTATTCACGAATCTCCA 58.549 43.478 0.00 0.00 32.50 3.86
504 505 3.251004 GCCCACATTATTCACGAATCTCC 59.749 47.826 0.00 0.00 32.50 3.71
505 506 3.251004 GGCCCACATTATTCACGAATCTC 59.749 47.826 0.00 0.00 32.50 2.75
506 507 3.117888 AGGCCCACATTATTCACGAATCT 60.118 43.478 0.00 0.00 32.50 2.40
507 508 3.003689 CAGGCCCACATTATTCACGAATC 59.996 47.826 0.00 0.00 32.50 2.52
508 509 2.951642 CAGGCCCACATTATTCACGAAT 59.048 45.455 0.00 0.00 34.93 3.34
509 510 2.290641 ACAGGCCCACATTATTCACGAA 60.291 45.455 0.00 0.00 0.00 3.85
510 511 1.280710 ACAGGCCCACATTATTCACGA 59.719 47.619 0.00 0.00 0.00 4.35
511 512 1.401552 CACAGGCCCACATTATTCACG 59.598 52.381 0.00 0.00 0.00 4.35
512 513 2.722094 TCACAGGCCCACATTATTCAC 58.278 47.619 0.00 0.00 0.00 3.18
513 514 3.289836 CATCACAGGCCCACATTATTCA 58.710 45.455 0.00 0.00 0.00 2.57
514 515 2.624838 CCATCACAGGCCCACATTATTC 59.375 50.000 0.00 0.00 0.00 1.75
515 516 2.244510 TCCATCACAGGCCCACATTATT 59.755 45.455 0.00 0.00 0.00 1.40
516 517 1.852309 TCCATCACAGGCCCACATTAT 59.148 47.619 0.00 0.00 0.00 1.28
517 518 1.294041 TCCATCACAGGCCCACATTA 58.706 50.000 0.00 0.00 0.00 1.90
518 519 0.409092 TTCCATCACAGGCCCACATT 59.591 50.000 0.00 0.00 0.00 2.71
519 520 0.323725 GTTCCATCACAGGCCCACAT 60.324 55.000 0.00 0.00 0.00 3.21
520 521 1.074775 GTTCCATCACAGGCCCACA 59.925 57.895 0.00 0.00 0.00 4.17
521 522 1.074775 TGTTCCATCACAGGCCCAC 59.925 57.895 0.00 0.00 0.00 4.61
522 523 1.074775 GTGTTCCATCACAGGCCCA 59.925 57.895 0.00 0.00 38.12 5.36
523 524 1.074775 TGTGTTCCATCACAGGCCC 59.925 57.895 0.00 0.00 42.36 5.80
524 525 4.819783 TGTGTTCCATCACAGGCC 57.180 55.556 0.00 0.00 42.36 5.19
529 530 5.741425 CATAACGATCATGTGTTCCATCAC 58.259 41.667 0.00 0.00 38.63 3.06
530 531 4.273235 GCATAACGATCATGTGTTCCATCA 59.727 41.667 0.00 0.00 0.00 3.07
531 532 4.319766 GGCATAACGATCATGTGTTCCATC 60.320 45.833 0.00 0.00 0.00 3.51
532 533 3.565482 GGCATAACGATCATGTGTTCCAT 59.435 43.478 0.00 0.00 0.00 3.41
533 534 2.942376 GGCATAACGATCATGTGTTCCA 59.058 45.455 0.00 0.00 0.00 3.53
534 535 3.206150 AGGCATAACGATCATGTGTTCC 58.794 45.455 0.00 1.91 0.00 3.62
535 536 4.025396 CAGAGGCATAACGATCATGTGTTC 60.025 45.833 0.00 0.00 0.00 3.18
536 537 3.873361 CAGAGGCATAACGATCATGTGTT 59.127 43.478 0.00 0.00 0.00 3.32
537 538 3.118629 ACAGAGGCATAACGATCATGTGT 60.119 43.478 0.00 0.00 0.00 3.72
538 539 3.461061 ACAGAGGCATAACGATCATGTG 58.539 45.455 0.00 0.00 0.00 3.21
539 540 3.827008 ACAGAGGCATAACGATCATGT 57.173 42.857 0.00 0.00 0.00 3.21
540 541 4.628766 CCATACAGAGGCATAACGATCATG 59.371 45.833 0.00 0.00 0.00 3.07
541 542 4.284490 ACCATACAGAGGCATAACGATCAT 59.716 41.667 0.00 0.00 0.00 2.45
542 543 3.641436 ACCATACAGAGGCATAACGATCA 59.359 43.478 0.00 0.00 0.00 2.92
543 544 4.258702 ACCATACAGAGGCATAACGATC 57.741 45.455 0.00 0.00 0.00 3.69
544 545 4.220821 CCTACCATACAGAGGCATAACGAT 59.779 45.833 0.00 0.00 0.00 3.73
545 546 3.572682 CCTACCATACAGAGGCATAACGA 59.427 47.826 0.00 0.00 0.00 3.85
546 547 3.914312 CCTACCATACAGAGGCATAACG 58.086 50.000 0.00 0.00 0.00 3.18
553 554 0.389391 CCGTGCCTACCATACAGAGG 59.611 60.000 0.00 0.00 0.00 3.69
554 555 0.249489 GCCGTGCCTACCATACAGAG 60.249 60.000 0.00 0.00 0.00 3.35
555 556 1.682451 GGCCGTGCCTACCATACAGA 61.682 60.000 7.58 0.00 46.69 3.41
556 557 1.227556 GGCCGTGCCTACCATACAG 60.228 63.158 7.58 0.00 46.69 2.74
557 558 2.904905 GGCCGTGCCTACCATACA 59.095 61.111 7.58 0.00 46.69 2.29
567 568 3.560278 CGTCATAACGGGCCGTGC 61.560 66.667 34.87 18.43 45.21 5.34
576 577 1.129251 TCGTCGGAGTGTCGTCATAAC 59.871 52.381 0.00 0.00 0.00 1.89
577 578 1.395954 CTCGTCGGAGTGTCGTCATAA 59.604 52.381 0.00 0.00 35.48 1.90
578 579 1.004595 CTCGTCGGAGTGTCGTCATA 58.995 55.000 0.00 0.00 35.48 2.15
579 580 1.794864 CTCGTCGGAGTGTCGTCAT 59.205 57.895 0.00 0.00 35.48 3.06
580 581 2.962827 GCTCGTCGGAGTGTCGTCA 61.963 63.158 0.00 0.00 42.53 4.35
581 582 2.202324 GCTCGTCGGAGTGTCGTC 60.202 66.667 0.00 0.00 42.53 4.20
582 583 3.735029 GGCTCGTCGGAGTGTCGT 61.735 66.667 0.00 0.00 42.53 4.34
583 584 3.384014 GAGGCTCGTCGGAGTGTCG 62.384 68.421 0.00 0.00 42.53 4.35
584 585 1.863662 TTGAGGCTCGTCGGAGTGTC 61.864 60.000 10.42 0.00 42.53 3.67
585 586 1.461091 TTTGAGGCTCGTCGGAGTGT 61.461 55.000 10.42 0.00 42.53 3.55
586 587 0.319555 TTTTGAGGCTCGTCGGAGTG 60.320 55.000 10.42 0.00 42.53 3.51
587 588 0.319641 GTTTTGAGGCTCGTCGGAGT 60.320 55.000 10.42 0.00 42.53 3.85
588 589 0.319555 TGTTTTGAGGCTCGTCGGAG 60.320 55.000 10.42 0.00 43.46 4.63
589 590 0.105224 TTGTTTTGAGGCTCGTCGGA 59.895 50.000 10.42 0.00 0.00 4.55
590 591 0.512952 CTTGTTTTGAGGCTCGTCGG 59.487 55.000 10.42 0.00 0.00 4.79
591 592 1.192534 GACTTGTTTTGAGGCTCGTCG 59.807 52.381 10.42 0.00 0.00 5.12
592 593 1.531578 GGACTTGTTTTGAGGCTCGTC 59.468 52.381 10.42 8.77 0.00 4.20
593 594 1.134220 TGGACTTGTTTTGAGGCTCGT 60.134 47.619 10.42 0.00 0.00 4.18
594 595 1.593196 TGGACTTGTTTTGAGGCTCG 58.407 50.000 10.42 0.00 0.00 5.03
595 596 2.952310 ACTTGGACTTGTTTTGAGGCTC 59.048 45.455 7.79 7.79 0.00 4.70
596 597 2.689983 CACTTGGACTTGTTTTGAGGCT 59.310 45.455 0.00 0.00 0.00 4.58
597 598 2.799562 GCACTTGGACTTGTTTTGAGGC 60.800 50.000 0.00 0.00 0.00 4.70
598 599 2.426738 TGCACTTGGACTTGTTTTGAGG 59.573 45.455 0.00 0.00 0.00 3.86
599 600 3.781079 TGCACTTGGACTTGTTTTGAG 57.219 42.857 0.00 0.00 0.00 3.02
600 601 6.072175 GGTATATGCACTTGGACTTGTTTTGA 60.072 38.462 0.00 0.00 0.00 2.69
601 602 6.092748 GGTATATGCACTTGGACTTGTTTTG 58.907 40.000 0.00 0.00 0.00 2.44
602 603 5.106317 CGGTATATGCACTTGGACTTGTTTT 60.106 40.000 0.00 0.00 0.00 2.43
603 604 4.394920 CGGTATATGCACTTGGACTTGTTT 59.605 41.667 0.00 0.00 0.00 2.83
604 605 3.938963 CGGTATATGCACTTGGACTTGTT 59.061 43.478 0.00 0.00 0.00 2.83
605 606 3.196901 TCGGTATATGCACTTGGACTTGT 59.803 43.478 0.00 0.00 0.00 3.16
606 607 3.792401 TCGGTATATGCACTTGGACTTG 58.208 45.455 0.00 0.00 0.00 3.16
607 608 4.442706 CTTCGGTATATGCACTTGGACTT 58.557 43.478 0.00 0.00 0.00 3.01
608 609 3.741388 GCTTCGGTATATGCACTTGGACT 60.741 47.826 0.00 0.00 0.00 3.85
609 610 2.544267 GCTTCGGTATATGCACTTGGAC 59.456 50.000 0.00 0.00 0.00 4.02
610 611 2.484770 GGCTTCGGTATATGCACTTGGA 60.485 50.000 0.00 0.00 0.00 3.53
611 612 1.873591 GGCTTCGGTATATGCACTTGG 59.126 52.381 0.00 0.00 0.00 3.61
612 613 1.873591 GGGCTTCGGTATATGCACTTG 59.126 52.381 0.00 0.00 0.00 3.16
613 614 1.488812 TGGGCTTCGGTATATGCACTT 59.511 47.619 0.00 0.00 0.00 3.16
614 615 1.128200 TGGGCTTCGGTATATGCACT 58.872 50.000 0.00 0.00 0.00 4.40
615 616 1.202651 AGTGGGCTTCGGTATATGCAC 60.203 52.381 0.00 0.00 0.00 4.57
616 617 1.128200 AGTGGGCTTCGGTATATGCA 58.872 50.000 0.00 0.00 0.00 3.96
617 618 2.143925 GAAGTGGGCTTCGGTATATGC 58.856 52.381 0.00 0.00 41.27 3.14
627 628 2.980246 AGCTTTAAGGAAGTGGGCTT 57.020 45.000 0.00 0.00 37.69 4.35
628 629 4.382386 TTTAGCTTTAAGGAAGTGGGCT 57.618 40.909 0.00 0.00 37.69 5.19
629 630 5.661056 ATTTTAGCTTTAAGGAAGTGGGC 57.339 39.130 0.00 0.00 37.69 5.36
630 631 7.614192 TCCTAATTTTAGCTTTAAGGAAGTGGG 59.386 37.037 0.00 0.00 37.69 4.61
631 632 8.575649 TCCTAATTTTAGCTTTAAGGAAGTGG 57.424 34.615 0.00 0.00 37.69 4.00
632 633 9.232473 ACTCCTAATTTTAGCTTTAAGGAAGTG 57.768 33.333 0.00 0.00 37.69 3.16
637 638 9.983804 CGTTTACTCCTAATTTTAGCTTTAAGG 57.016 33.333 0.00 0.00 0.00 2.69
640 641 9.709495 TCACGTTTACTCCTAATTTTAGCTTTA 57.291 29.630 0.00 0.00 0.00 1.85
641 642 8.611654 TCACGTTTACTCCTAATTTTAGCTTT 57.388 30.769 0.00 0.00 0.00 3.51
642 643 8.611654 TTCACGTTTACTCCTAATTTTAGCTT 57.388 30.769 0.00 0.00 0.00 3.74
643 644 8.611654 TTTCACGTTTACTCCTAATTTTAGCT 57.388 30.769 0.00 0.00 0.00 3.32
644 645 9.274065 CATTTCACGTTTACTCCTAATTTTAGC 57.726 33.333 0.00 0.00 0.00 3.09
647 648 8.021396 GCTCATTTCACGTTTACTCCTAATTTT 58.979 33.333 0.00 0.00 0.00 1.82
648 649 7.361799 GGCTCATTTCACGTTTACTCCTAATTT 60.362 37.037 0.00 0.00 0.00 1.82
649 650 6.093633 GGCTCATTTCACGTTTACTCCTAATT 59.906 38.462 0.00 0.00 0.00 1.40
650 651 5.585047 GGCTCATTTCACGTTTACTCCTAAT 59.415 40.000 0.00 0.00 0.00 1.73
651 652 4.933400 GGCTCATTTCACGTTTACTCCTAA 59.067 41.667 0.00 0.00 0.00 2.69
652 653 4.501071 GGCTCATTTCACGTTTACTCCTA 58.499 43.478 0.00 0.00 0.00 2.94
653 654 3.335579 GGCTCATTTCACGTTTACTCCT 58.664 45.455 0.00 0.00 0.00 3.69
654 655 2.418976 GGGCTCATTTCACGTTTACTCC 59.581 50.000 0.00 0.00 0.00 3.85
655 656 3.071479 TGGGCTCATTTCACGTTTACTC 58.929 45.455 0.00 0.00 0.00 2.59
656 657 3.134574 TGGGCTCATTTCACGTTTACT 57.865 42.857 0.00 0.00 0.00 2.24
657 658 4.412207 GAATGGGCTCATTTCACGTTTAC 58.588 43.478 14.31 0.00 43.08 2.01
658 659 3.126171 CGAATGGGCTCATTTCACGTTTA 59.874 43.478 14.31 0.00 43.08 2.01
666 667 2.006888 CGTACACGAATGGGCTCATTT 58.993 47.619 14.31 0.00 43.08 2.32
678 679 0.315886 ATCAACTGGCACGTACACGA 59.684 50.000 9.04 0.00 43.02 4.35
702 703 4.795278 CGCAAGCCTAATTTTAGCTTCAAG 59.205 41.667 0.00 0.00 30.34 3.02
704 705 4.355543 CGCAAGCCTAATTTTAGCTTCA 57.644 40.909 0.00 0.00 30.34 3.02
737 743 1.275657 CCATCGTACGCGGCATTTC 59.724 57.895 12.47 0.00 38.89 2.17
743 749 2.672908 ATCGGAACCATCGTACGCGG 62.673 60.000 18.58 18.58 38.89 6.46
831 837 1.144936 GCTGGACGGGAGAGGAATG 59.855 63.158 0.00 0.00 0.00 2.67
832 838 1.002274 AGCTGGACGGGAGAGGAAT 59.998 57.895 0.00 0.00 0.00 3.01
889 895 1.148867 GATGGGAGGAGGGAGAGATGA 59.851 57.143 0.00 0.00 0.00 2.92
1080 1108 2.490148 TATGGAGTCCTGCTCGCCG 61.490 63.158 11.33 0.00 45.03 6.46
1541 1574 5.494618 TCACGAAAACAATAACAGTCGTTG 58.505 37.500 0.00 0.00 39.51 4.10
1750 1820 8.083462 TGTTATGTCGCCATATACTGAATTTC 57.917 34.615 0.00 0.00 33.63 2.17
1761 1831 2.272678 CGGTGTTGTTATGTCGCCATA 58.727 47.619 0.00 0.00 32.29 2.74
1763 1833 0.249953 ACGGTGTTGTTATGTCGCCA 60.250 50.000 0.00 0.00 0.00 5.69
1795 1873 6.693315 ATAAGAAAACGGTAACCATGATGG 57.307 37.500 10.53 10.53 45.02 3.51
1832 1910 5.321927 ACCCTGAACCGTCAAATAGAAATT 58.678 37.500 0.00 0.00 31.88 1.82
1847 1925 1.202615 GGCCTATAACGGACCCTGAAC 60.203 57.143 0.00 0.00 0.00 3.18
1852 1930 2.621526 CAAAATGGCCTATAACGGACCC 59.378 50.000 3.32 0.00 0.00 4.46
1854 1932 2.685897 TGCAAAATGGCCTATAACGGAC 59.314 45.455 3.32 0.00 0.00 4.79
1855 1933 3.006112 TGCAAAATGGCCTATAACGGA 57.994 42.857 3.32 0.00 0.00 4.69
1857 1935 4.489810 TGTTTGCAAAATGGCCTATAACG 58.510 39.130 14.67 0.00 0.00 3.18
1858 1936 4.869861 CCTGTTTGCAAAATGGCCTATAAC 59.130 41.667 14.67 0.00 0.00 1.89
1862 1941 1.001860 GCCTGTTTGCAAAATGGCCTA 59.998 47.619 30.83 2.68 34.50 3.93
1865 1944 1.525941 ATGCCTGTTTGCAAAATGGC 58.474 45.000 32.64 32.64 45.84 4.40
1866 1945 3.055963 TCCTATGCCTGTTTGCAAAATGG 60.056 43.478 14.67 18.63 45.84 3.16
1871 1950 1.545582 GCTTCCTATGCCTGTTTGCAA 59.454 47.619 0.00 0.00 45.84 4.08
1884 1963 2.846193 GAAGTGGTTGTGTGCTTCCTA 58.154 47.619 0.00 0.00 33.30 2.94
1885 1964 1.680338 GAAGTGGTTGTGTGCTTCCT 58.320 50.000 0.00 0.00 33.30 3.36
1886 1965 0.668535 GGAAGTGGTTGTGTGCTTCC 59.331 55.000 6.45 6.45 46.57 3.46
1887 1966 0.307760 CGGAAGTGGTTGTGTGCTTC 59.692 55.000 0.00 0.00 37.27 3.86
1892 1971 1.594293 CTCGCGGAAGTGGTTGTGT 60.594 57.895 6.13 0.00 43.13 3.72
1897 1976 2.034879 CATTGCTCGCGGAAGTGGT 61.035 57.895 6.13 0.00 43.13 4.16
1898 1977 2.787249 CATTGCTCGCGGAAGTGG 59.213 61.111 6.13 0.00 43.13 4.00
1900 1979 3.127533 GGCATTGCTCGCGGAAGT 61.128 61.111 6.13 0.00 0.00 3.01
1912 1991 2.598985 TGAAAACGGGCCGGCATT 60.599 55.556 31.78 20.97 0.00 3.56
1913 1992 3.370231 GTGAAAACGGGCCGGCAT 61.370 61.111 31.78 15.40 0.00 4.40
1914 1993 4.572571 AGTGAAAACGGGCCGGCA 62.573 61.111 31.78 18.94 0.00 5.69
1919 1998 1.594331 ACAGAGAAGTGAAAACGGGC 58.406 50.000 0.00 0.00 0.00 6.13
1922 2001 6.598753 TTAGGAAACAGAGAAGTGAAAACG 57.401 37.500 0.00 0.00 0.00 3.60
1927 2006 6.479972 TCAGTTTAGGAAACAGAGAAGTGA 57.520 37.500 4.99 0.00 43.79 3.41
1963 2049 3.181491 CGTGGGTTTGAATCACAGTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
1968 2054 1.194547 CGTCGTGGGTTTGAATCACAG 59.805 52.381 0.00 0.00 0.00 3.66
1969 2055 1.222300 CGTCGTGGGTTTGAATCACA 58.778 50.000 0.00 0.00 0.00 3.58
1972 2058 0.110373 GCACGTCGTGGGTTTGAATC 60.110 55.000 25.70 2.97 33.64 2.52
1977 2063 2.660552 CTCGCACGTCGTGGGTTT 60.661 61.111 33.00 0.00 44.89 3.27
1984 2070 3.120616 TCTTAAATGAAACTCGCACGTCG 59.879 43.478 0.00 0.00 40.15 5.12
1985 2071 4.640805 TCTTAAATGAAACTCGCACGTC 57.359 40.909 0.00 0.00 0.00 4.34
2021 2107 2.551270 TCAGATTAAGGTGAGGTGGCT 58.449 47.619 0.00 0.00 0.00 4.75
2122 2214 4.208746 TCGCCAAGTAGAAAAGGGAAAAA 58.791 39.130 0.00 0.00 0.00 1.94
2123 2215 3.822940 TCGCCAAGTAGAAAAGGGAAAA 58.177 40.909 0.00 0.00 0.00 2.29
2124 2216 3.495434 TCGCCAAGTAGAAAAGGGAAA 57.505 42.857 0.00 0.00 0.00 3.13
2125 2217 3.143728 GTTCGCCAAGTAGAAAAGGGAA 58.856 45.455 0.00 0.00 0.00 3.97
2126 2218 2.370849 AGTTCGCCAAGTAGAAAAGGGA 59.629 45.455 0.00 0.00 0.00 4.20
2129 2221 6.495706 AGAAAAAGTTCGCCAAGTAGAAAAG 58.504 36.000 0.00 0.00 38.90 2.27
2137 2229 5.173854 GTGATTGAAGAAAAAGTTCGCCAAG 59.826 40.000 0.00 0.00 38.90 3.61
2140 2232 4.606961 TGTGATTGAAGAAAAAGTTCGCC 58.393 39.130 0.00 0.00 38.90 5.54
2174 2266 9.435802 TCGAATTGAAAATTTTCTTGCATTTTG 57.564 25.926 26.73 15.01 38.02 2.44
2176 2268 9.601971 CATCGAATTGAAAATTTTCTTGCATTT 57.398 25.926 26.73 12.69 38.02 2.32
2177 2269 8.991026 TCATCGAATTGAAAATTTTCTTGCATT 58.009 25.926 26.73 19.22 38.02 3.56
2180 2272 8.490355 AGTTCATCGAATTGAAAATTTTCTTGC 58.510 29.630 26.73 14.68 37.36 4.01
2359 2480 5.757886 TCATTGATTTCGAAAGTGGTTCAC 58.242 37.500 16.80 1.53 35.83 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.