>input_sequence_81908
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-------------------------------------------------------------------ATGGCCCGGATCG
GCGTTGCAGTGCTCGCCCTCCTGGTGGCCGCCGCGGCGGTCGCCTGCCTGCCGGCCCCGGCCTCCGCCGGCGAGCAGGAC
TCCATACTGCTGTCGCGCGCGGCGACCTGCGACGGGGCCGTCGGGGAGTGCGGCGTGGACGAGGACGAGGAGATGGGGAC
GGGCGCCTACGGCACAGGCGAGGCCCTGCGCCGGTCGCTGGCGCGGAAGCCGACGGCCAGGTACATCAGCTACGCGGCGC
TGCGCGCCGACCAGGTCCCCTGCAACAAGCGCGACAAGTCCTACTACACCAACTGCGGCTCGATGCAGCAGGCCAACCCC
TACACGCGCGGCTGCTCCGCCATCACGCGCTGCGCGCGCAACATGAACTGA-----------------------------
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>chr3B_1_TraesCS3B01G158100
TTCTGCGCCGGTCAGGGCATCTGGCGCCCACCACCAAGCAAGTATGGGCCGACCCATCAGGCAAGTGATCGCTCGCCTAG
GTCTGCGGTTGACTTTTAGGGAAAAGTAGAAAAAATATCTAAAAATGGAAAAAATCAAAAAAAAGTTTATGAACTCGATA
AAATTTTGTGATTATGGTTTTTTTCATGAATTTGAAAAAGGTTTGAGGATTTGAAAAACAAAAAAATTGAAAAAAAACTT
CAGCGATTTAAAAAAAGCTTGAAAAGTTTCTAGGGATTTTTTATTTTTTTTTGCGGATATGGAAAACGTTCACTGATTTT
TTACAGAGGCGATGAATTTGAAAAAAGTTCACAGGCTTTTTGAAAAAAGGTTCATGAATTTGAAAAAGCTCAAGAATGTT
TAGAAAATCAATTTTGAAAGAAGTTCACGCATATAAAAAATAAAAAATAAAAAAATGGCAGAAGATAGCGGACTACAGTT
CCTAAATGACCTTTTTTACGGGGTGGAGATTCGTGAATAATGTGGGCCTGTGATGGAACACATGATCGTTATGCCTCTGT
ATGGTAGGCACGGCCCGTTATGACGACACTCCGACGAGCCTCAAAACAAGTCCAAGTGCATATACCGAAGCCCACTTCCT
TAAAGCTAAAATTAGGAGTAAACGTGAAATGAGCCCATTCGTGTACGTGCCAGTTGATCTTCCTTGAAGCTAAAATTAGG
CTTGCGCG-----CCAGTTGCAGAAATGCCGCGTACGATGGTTCCGATCGGGCCGGGCGCCGTGGCCGAGGCCGCAACGC
GCGGCGGCACCGGCCAAGCCGACGTGCGGCCGCCCTCATTCCTCTCCCGTCCAGCTCCTCCCATTCCAAATCCCCTTTCC
CCCGCGTCTCCTCTTCATCTCTC--CCTCCTCCCATCCCCTTCAAAGAGAGAAGAAGGCATGGAGGGATCCACCCTAGCC
GCAGACCGACAAACCG-----------------CAAGAAACCAGCAACCAGACTGAAGA---CCGACATGGCCCGGATCG
GCGTTGCAGTGCTCGCCCTCCTGGTGGCCGCCGCGGCGGTCGCCTGCCTGCCGGCCCCGGCCTCCGCCGGCGAGCAGGAC
TCCATACTGCTGTCGCGCGCGGCGACCTGCGACGGGGCCGTCGGGGAGTGCGGCGTGGACGAGGACGAGGAGATGGGGAC
GGGCGCCTACGGCACAGGCGAGGCCCTGCGCCGGTCGCTGGCGCGGAAGCCGACGGCCAGGTACATCAGCTACGCGGCGC
TGCGCGCCGACCAGGTCCCCTGCAACAAGCGCGACAAGTCCTACTACACCAACTGCGGCTCGATGCAGCAGGCCAACCCC
TACACGCGCGGCTGCTCCGCCATCACGCGCTGCGCGCGCAACATGAACTGATT-CGTCGTCCGTATGCCCGCCTCTGCTG
CCTCGTCGATCTCGCGCACGTACGGCAATCATCGATACGTGCGTAC-GAACGGAGAGGAGAC--GTGACCGTGTGAGCGC
CTAATTAAGCACTGTATGCGTTT-GTGCTGCTTCAACATTGATCCAACAAAATCAACGACTGTTATTGTT----TTCGTG
AGTAGCTTCTATCTATGTATCCACCGTGTTCCTGCTATTGCCATG------CCAATTTATTCCTTCTG-AAAAATGTTTG
TATATTTGAAGAAGAACAGAGTTTTTTTT-----TTCCGCCTCTATTTTGATATGCTTGTAATTTTCATAAACG------
---------------AGTTAGAATTTGTGGATATGTTCTATTTACTCGATTTAATTATTGAAATTCAGTATATGGCGACA
TAAC--------AACACCGTTTATGGTCATTCCCATCATGGTTACCGTTTTCTTATACAATTTTTTGGCAATTTCTATTT
GACGGTTCAGGGTCCG-TTATAGGCCATTTTGCAAACAGGCATAGGAAGCACACAACCACTTCCGCGAGCAATGCCGGCC
CGTTTTCA------CTTCTCTGTTTCCTAAACTGAGAAAAAAC-GTGCACAAACTGTGATTCAAACCCACGACGTGCGAG
TTTCATTTAAGATGCGATAAGCACCCAGCCACCTCACCTTAATC------TGATTACATAGATATATTTCCTCTTTTCTT
CTCTGTTATCTTTTTTTTCGTTCCTTTCTTTTTTTTTCATTTTTTGGTCCCTTTTTTTCCCTTTTCTACTTGGCGAACTT
TTTCTTCAATCACATAATTTTTTTTCAAAATGCAAGAAAA-------TTTTCAATTCGATGAACTTTTTTTTAATATGGA
TGATCTTTTTTTCGAATTTGATGAACTTTTTCATTTTTTCAAAGAATATATTTCAAATTCAATGATTTTTTCAATTCCAA
TAATCTTTTCA---------------------AAATTTGTTGAACTTTTTAAA-AATTTGATGAACTTTTTTCAAATTTG
TGAACCACTTTCGAAATCAATGAA
>chr3D_660
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-------------------AAACGTGGAATGAGCCCATGCGTCTACGTGCCAATTGATCTTCTTCAAAGCTAAAATTAGG
CTAGCACAAGT------TTGCACCGTCAGTTGATCCCTCCCTCGCAGG--TGCCGGGGCAA------GAGGCCGCAACGC
GCGGCGGCACCGGCCAATCCGACGTGCGGCCGCCCTGCTTCCTCTCCCGTCCAGCTCCTCCCTTTCCAAATCCCCATTCC
CCCGCGTCTCCTCTCCA--CCTCTCCCTCCTCCCATCCCCTTCAAAGAGAGAGGAAGGCATGGAGGGATCCACCCTAGCC
GCAGACCGACAAACCG-----------------CAAGAAACCAGCAACCAGACTGAAGA---CCCACATGGCCCGGATCG
GCGTCGCGGTGCTCGCGCTCCTGGTGGCCGCCGCGGCGGTGGCCTGCCTGCCGGCCCCGGCCTCCGCGGGCGAGCAGGAC
TCCATGCTGCTGACGCGCTCGGCGACCTGCGACGGGGCCGTCGGGGAGTGCGGCGTGGACGAGGACGAGGAGATGGGGAC
GGGCGCCAACGGCACCGGCGAGGCCCTGCGCCGGTCGCTGGCGCGGAAGCCGACGGCCAGGTACATCAGCTACGCCGCTC
TGCGCGCCGACCAGGTCCCCTGCAACAAGCGCGACAAGTCCTACTACACCAACTGTGGCTCGATGCAGCAGGCCAACCCC
TACACGCGCGGCTGCTCCGCCATCACGCGCTGCGCGCGCAACATGAACTGATTTCGTCGTCCGGATGCC-----------
--TCGTCGATCTCGCGCACGGACGGCAATCATCGATACGTGCGTACGGAACGGGGAGGAGA--TGTGACCGTGTGAGCGC
CTAATTAAGCACTGTATGCGTTTTGTGCTGCTTCAACATTGATCCAACAAAATTAACGACTGTTATTGTT----TTCGTG
AGTAGCTTCTATCTATGTACCCACCGTGTTCCTTCTATTGCCACG------CCAATTTATTCCTTTTGAAAAAATGTTTG
TATATTTGAAGAAGAACAGAGTTTTTTTTTT------CGCCTCTATTTTCATATGCTTGTAATTTTCATAAACGGGGTTG
TCATGTTGAAGAACGAGTTAGAATTTGTGGATGTATTCTATTTACTCGATTTAATTATTAAAATTCAGTACACGGCGACA
TAACTTTATGAAAACCCTGTTTGTGGTCATTCTCATCATGGTTACCATTTTCTTATACAATTTTTTGGCGATTTCTATTT
GGCGCTTCACGCGCTTATTACAGCACATTCTGCAAACAGGCACGA-AAGCGCACACTCCCTCCCGCGAGCTGGGCCGTCC
AGTTTCATTTTTTTCTTCTCTATTTTCTAAACTGAGAAAAAAAAGTGCGCAAAACGTTATTCGAACCCATTACGTGCGAG
TTGGGTGTAAGATGCGATAAGCACCCGGCCACCTCACCTTGATGTGATTGTGATTACATAGATGTTTTTCCACATTTCTT
ATTTCTTCTCTTTTTTTCCGTCCCTTTCTCTTTTTTCTTAGTC---------------CCTTTTTCTAATTCGCAAACTT
TTTCTGCAAACAGATGAACTTTTTTATTTATTTTTAATTGCATGATTTTTTCAATTCGATGAAAATTTTCAAGTT-----
TGATGTTTTTTCCAAATTTGACGATTTTTTTA----------------------AAATTCAATGATTTTTTCAAATCCGA
TATTTTTTTTTCCAAATTTGATGTTTTTTTTCAAATTGGATGAACTTTTTTTCGAAATTGATGAACTTTTTTCAAATTTA
TGAACTA-TTTGAAAACCAATGAA
>chr3A_660
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-------------------AAACGTGGAATGAGCCCATGCGTGTACGTGCCAGTTGGTCTTCTTCAAAGCTAAAATTAGG
CCAGCGCAAGAAACCAGTTGCACCGTCAGTTGATCCCTC----GCAGG--TGCTGGGGCAA------GAGGCCGCAACGC
GCGGTGGCACCGGCCAATCCGACGTGCGGCCGCCCTGCTTCCTCTCCCGTCCAGCTCCTCCCATTCCAAATCCCCTTTCC
CCCGCGTCTCCTCTCCA--CCTC--CCTCCTCCCATCCCCTTCAAAGAGAGATGAAGGCATGGAGGGATCCACCCTAGCC
GCAGACCGACAGACCC-----------------CAAGCAACCCGCAACCAGACTGAAGA---CCGACATGGCCCGGATCG
GCGTCGCCCTGCTCGCGCTCCTGGTGGCCGCCGCGGCGGTGGCGTGCCTGCCGGCCCCGGCCTCCGCGGGCGAGCAGGAC
TCCATGCTGCTGACGCGCGCGGCGACCTGCGACGGCGCCGTCGGGGAGTGCGGCGTGGACGAGGACGAGGAGATGGGCAC
GGGCGCCTACGGCACCGGCGAGGCCCTGCGCCGGTCGCTGGCGCGCAAGCCGACGGCCAGGTACATCAGCTACGCGGCCC
TGCGCGCCGACCAGGTCCCCTGCAACAAGCGCGACAAGTCCTACTACACCAACTGCGGCTCGATGCAGCAGGCCAACCCC
TACACGCGCGGCTGCTCCGCCATCACGCGCTGCGCGCGCAACATGAACTGATT-CGTCCTCCGTATGCCCGCCTCTGCTG
CCCCGTCGATCTCGCGCGCGTACGGAGCGGA--------------------------GAGGAGTGTCACCGTGTGAGCGC
CTAATTAAGCACTGTGTGCGTTT-GTGCTGCTTCAACATTGATCCAACAAAATTAACGACTGTTATTGTATTTGTTTGTG
AGTAGATTTTG----TGTATCCAACGTGTTCCTGCTACTGCCATGTGTACGCCAATTTATTCGTTTTG-AAAAATGTTTG
TGTATTTGAAGAAGAACAGGATTTTTATTTTATTTTCCGCCTCTATTTTGATATGCTTGTAATTTTCATGAACG------
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>chr2B_735
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-------------------GCACATATGGCGCGTATCATGGTTTCGATCTTGCTGGGCGCCGAGGCGGAGGCCGCAACGC
GCGGCGGCACTGGCCAAGCCGACGTGCGGCCGCCCTGCTCCCTCTCC---------------------AAACCCCCTTCA
CCCGCATCTCCTCTCCATCTCCC--CCTCCTCCCACTCCCTTCAAAGAGAGAAGAAAGCAGGGAGAGATCCACC-TAGGT
GCATACCGACAAACCGAC--CGACTCAAACCCGCAAGAAACCAGCCACCGGACGGAAGA---CTGACATGGCAAGGCTCG
GCGTGGCCTTGCTCGCGCTCCTGGCGGCCGCGGCGGCGGTCGCCAGCCTGCCGTCCCCGGCCTCCGCGGGCGAGCTGGCC
TCCATGCTGCTGTCGCGCGCGGCGGCCTGCGACGGGGTCATCGGGGAGTGCGGCGTGGACGAGGACGAGGAGATGGTGAC
GGGCGCCGGCGGCGCCGGTGAGGCACTGCGCCGGTCGCTGGTGCGGAAGTCGACGGCCAGGTACATCAGCTACGCGGCGC
TGCGCGCCGACCAGATCCCCTGCGACAAGCGCGGGGCGTCCTACTACATCAACTGCGGGTCCATGCAGCAGGCCAACCCC
TACACGCGTGGCTGCTCCGCCATCACGCACTGCGCGCGCAACATGAACTGATT-CGTCGTCCCTAGGCC-----------
--TGGTGGATCTTGCGCACGTACGGCAGTGATCGATGCGTACGCACGGAGCGGCGAGGAG--------------------
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>chr2D_740
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------------------------AATGGCGCGTATGATGGTTTCGATCTTGCTGGGCGCCGAGGCGGAGGCCGCAACGC
GCGGCGGCACTGGCCAAGCCGACGTGCGGCCGTCCTGCTCCCTCTCC---------------------AAACCCCCTTCC
CCCGCATCTCCTCTCCATCTCCC--CCTCCTCCCACTCCCTTCAAAGAGAGAAGAAGGCAGGGAGGGATCTACCCTAGCT
TCAGACCGACAAACCGAC--CGACTCAAACCCGCAAGAAACCAGCTACCGGACAGAAGA---CTGACATGGCAAGGCTCG
GCGTGGCCTTGCTCGCGCTCCTGGCGGCCGCCGCGGCGGTCGCCTGCCTGCCGTCCCCGGCCTCCGCGGGCGAGCTGGCC
TCCATGCTGCTGTCGCGCGCGGCGGCCTGCGACGGGGTCATCGGGGAGTGCGGCGTGGACGAGGACGAGGAGATGGTGAC
GGGCG---------CCGGTGAGGCCCTGCGCCGGTCGCTGGTGCGGAAGTCGACGGCCAGGTACATCAGCTACGCGGCGC
TGCGCGCCGACCAGATCCCCTGCGACAAGCGCGGGGCGTCCTACTACATCAACTGCGGGTCCATGCAGCAGGCCAACCCC
TACACGCGCGGCTGCTCCGCCATCACGCACTGCGCGCGCAACATGAACTGATC-CGTCGTCCGTAGGCC-----------
--TGGTGGATCTTGCGCACGTACGGCACTGATCGATGCGTACGCACGGAGCGGCGAGGAGGTGTGTGGCCGTGCGATCAC
CTAATTA-------------------------------------------------------------------------
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>chr2A_741
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-------------------------ATGGCGCGTATGATGGTTTCGATCTTGCTGGGCGCCGAGGCGGAGGCCGCAACGC
GCGGCGGCACTGGCCAAGCCGACGTGCGGCCGCCCTGCTCCCTCTCC---------------------AAACCCACTTCC
CCCGCATCTCCCCTCCATCCCCC--CCTCCTCCCACTCCCTTCAAAGAGAGAAGAAAGCTGGGAGAGATCCACCCTAGCT
GCAGACCGACAAAGCGACCGCGACTCAAACCCGCAAGAAACCAGCTACCGGACAGAAGAAGACTGGCATGGCAAGGCTCG
GCGTGGCCTTGCTCGCGCTCCTGGCGGCCGCGGCGGCGGTCGCCTGCCTGCCGTCCCCGGCCTCCGCGGGCGAGCTGGCC
TCCATGCTGCTGTCGCGCGCGGCGGCCTGCGACGGGATCATCGGGGAGTGCGGCGTGGACGAGGACGAGGAGATGGCGCC
GGGCG---------CCGGCGAGGCCCTGCGCCGGTCGCTGGCGCGGAAGTCGACGGCCAGGTACATCAGCTACGCGGCGC
TGCGCGCCGACCAGATCCCCTGCGACAAGCGCGGGGCGTCCTACTACATCAACTGCGGGTCCATGCAGCAGGCCAACCCC
TACACGCGCGGCTGCTCCGCCATCACGCACTGCGCGCGCAACATGAACTGATC-CCTCGTCCGTAGGCC-----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------S-----------S-----------------------S-SS--------------
--S----S--------------S-----S--------------S-----SS-----------S---S-------------
------------------------------------SS------------------------------------------
--------------S-----------------------------------------------------------------
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----S--S--------S--------------------------------------------------S------------
-----S--------------------------------------------------------------------------
---------------S----------------------------------------------------------------
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-----------------------------------------------------S-------S------------------
-----------------------------------------------------S--------------------------
-----------------------------------------------------------------S--------------
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--------------------------------S-S------------------------S----------S-S-------
---------------S-S----S---------S-------------S----------------------S----------
-S--S----S-SS-SS----S--SS----S------------SSSS----S----SS-S--S--------SSS----S--
S----SSS-------------S---S----------------S-----S----SS--S----S------SS---------
--SSS-S-------------------S-------------S--S-------------------S-S-----S-S------
S-S-S--S---------S---S-------S------SSSSS-SSSSSSSSSSSSSSSS--S-------S--S--S-----
-----S---S--S--S-SS------SSSS--SSSSS-SSS-----------------------SS----SSSSS-SSSSS
----S------S-S-------S--SS-----SSSSSSSSSSSSSSSSSSSSSSS--------------------S---S-
--S-S----SS--------------------------S-S----------SSS---S----------------------S
-----S-S---SS---S-------
>forward_609
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-----------------------------TCCGACGAGCCTCAAAACAA-------------------------------
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>reverse_2058
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---------------------------------------------------------GATTCAAACCCACGACGTGC---
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