Multiple sequence alignment - TraesCS3B01G156300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G156300 chr3B 100.000 4281 0 0 1 4281 148998037 149002317 0.000000e+00 7906.0
1 TraesCS3B01G156300 chr3B 89.524 105 7 3 2541 2644 728905052 728904951 3.470000e-26 130.0
2 TraesCS3B01G156300 chr3B 94.737 76 4 0 1 76 203418541 203418616 7.520000e-23 119.0
3 TraesCS3B01G156300 chr3B 94.737 76 4 0 1 76 255384432 255384507 7.520000e-23 119.0
4 TraesCS3B01G156300 chr3B 94.737 76 4 0 1 76 284643184 284643259 7.520000e-23 119.0
5 TraesCS3B01G156300 chr3D 92.635 1928 98 20 83 1998 98535532 98537427 0.000000e+00 2734.0
6 TraesCS3B01G156300 chr3D 90.339 1563 90 30 2736 4281 98538557 98540075 0.000000e+00 1993.0
7 TraesCS3B01G156300 chr3A 90.616 1332 100 17 623 1947 116100196 116101509 0.000000e+00 1744.0
8 TraesCS3B01G156300 chr3A 92.640 856 46 6 2718 3561 116102344 116103194 0.000000e+00 1216.0
9 TraesCS3B01G156300 chr3A 85.484 372 29 11 275 636 116099823 116100179 8.750000e-97 364.0
10 TraesCS3B01G156300 chr3A 84.167 240 25 3 2096 2335 116101792 116102018 2.000000e-53 220.0
11 TraesCS3B01G156300 chr7B 95.604 91 2 2 2548 2637 450586467 450586556 1.240000e-30 145.0
12 TraesCS3B01G156300 chr7B 95.455 88 3 1 2550 2637 203031460 203031546 5.770000e-29 139.0
13 TraesCS3B01G156300 chr7B 94.737 76 4 0 1 76 368986571 368986646 7.520000e-23 119.0
14 TraesCS3B01G156300 chr5A 93.750 96 4 2 2543 2637 207681921 207681827 4.460000e-30 143.0
15 TraesCS3B01G156300 chr4B 92.000 100 6 2 2543 2640 391554417 391554318 5.770000e-29 139.0
16 TraesCS3B01G156300 chr4B 94.737 76 4 0 1 76 143539705 143539780 7.520000e-23 119.0
17 TraesCS3B01G156300 chr4B 94.737 76 4 0 1 76 408781139 408781214 7.520000e-23 119.0
18 TraesCS3B01G156300 chr4B 93.421 76 5 0 1 76 449546004 449546079 3.500000e-21 113.0
19 TraesCS3B01G156300 chr4B 89.474 57 5 1 202 258 615149209 615149154 2.140000e-08 71.3
20 TraesCS3B01G156300 chr2B 94.505 91 3 2 2549 2637 354073608 354073698 5.770000e-29 139.0
21 TraesCS3B01G156300 chr2B 93.617 94 3 3 2547 2638 41129581 41129489 2.080000e-28 137.0
22 TraesCS3B01G156300 chr5D 86.885 122 16 0 141 262 6374197 6374076 2.080000e-28 137.0
23 TraesCS3B01G156300 chr5D 100.000 29 0 0 206 234 301585320 301585292 2.000000e-03 54.7
24 TraesCS3B01G156300 chr5B 92.632 95 5 2 2545 2638 375770593 375770500 7.470000e-28 135.0
25 TraesCS3B01G156300 chr7D 91.753 97 6 2 2550 2645 626199969 626199874 2.690000e-27 134.0
26 TraesCS3B01G156300 chr4A 87.179 117 11 2 141 257 146957863 146957751 3.470000e-26 130.0
27 TraesCS3B01G156300 chr6D 86.916 107 14 0 129 235 445975772 445975878 2.090000e-23 121.0
28 TraesCS3B01G156300 chrUn 94.737 76 4 0 1 76 138566362 138566437 7.520000e-23 119.0
29 TraesCS3B01G156300 chr1B 94.737 76 4 0 1 76 95471091 95471166 7.520000e-23 119.0
30 TraesCS3B01G156300 chr2D 88.889 54 5 1 201 254 170610915 170610967 9.940000e-07 65.8
31 TraesCS3B01G156300 chr1A 100.000 32 0 0 203 234 577831370 577831401 4.620000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G156300 chr3B 148998037 149002317 4280 False 7906.0 7906 100.00000 1 4281 1 chr3B.!!$F1 4280
1 TraesCS3B01G156300 chr3D 98535532 98540075 4543 False 2363.5 2734 91.48700 83 4281 2 chr3D.!!$F1 4198
2 TraesCS3B01G156300 chr3A 116099823 116103194 3371 False 886.0 1744 88.22675 275 3561 4 chr3A.!!$F1 3286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.105778 GACCTCATCCTGCTACAGCC 59.894 60.0 0.0 0.0 41.18 4.85 F
525 539 0.109272 TAGCCGAACTCGCTGTTGAG 60.109 55.0 0.0 0.0 39.30 3.02 F
1962 2014 0.102300 AAAACAAACTGTCCCAGCGC 59.898 50.0 0.0 0.0 34.37 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1439 0.902984 TGTGTGGCGGGATGTACTCT 60.903 55.0 0.0 0.0 0.00 3.24 R
1965 2017 0.979665 TCAGCTACTTTGGCTCTGCT 59.020 50.0 0.0 0.0 38.03 4.24 R
3435 4243 0.320697 CTTCCGAGAACCCCGAAACT 59.679 55.0 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.386078 TCATAGACTTGACCTCATCCTGC 59.614 47.826 0.00 0.00 0.00 4.85
23 24 1.949799 AGACTTGACCTCATCCTGCT 58.050 50.000 0.00 0.00 0.00 4.24
24 25 3.107402 AGACTTGACCTCATCCTGCTA 57.893 47.619 0.00 0.00 0.00 3.49
25 26 2.763448 AGACTTGACCTCATCCTGCTAC 59.237 50.000 0.00 0.00 0.00 3.58
26 27 2.497675 GACTTGACCTCATCCTGCTACA 59.502 50.000 0.00 0.00 0.00 2.74
27 28 2.499289 ACTTGACCTCATCCTGCTACAG 59.501 50.000 0.00 0.00 0.00 2.74
28 29 0.826715 TGACCTCATCCTGCTACAGC 59.173 55.000 0.00 0.00 42.50 4.40
29 30 0.105778 GACCTCATCCTGCTACAGCC 59.894 60.000 0.00 0.00 41.18 4.85
30 31 0.326048 ACCTCATCCTGCTACAGCCT 60.326 55.000 0.00 0.00 41.18 4.58
31 32 0.392336 CCTCATCCTGCTACAGCCTC 59.608 60.000 0.00 0.00 41.18 4.70
32 33 1.117994 CTCATCCTGCTACAGCCTCA 58.882 55.000 0.00 0.00 41.18 3.86
33 34 1.483827 CTCATCCTGCTACAGCCTCAA 59.516 52.381 0.00 0.00 41.18 3.02
34 35 1.483827 TCATCCTGCTACAGCCTCAAG 59.516 52.381 0.00 0.00 41.18 3.02
35 36 1.209019 CATCCTGCTACAGCCTCAAGT 59.791 52.381 0.00 0.00 41.18 3.16
36 37 0.898320 TCCTGCTACAGCCTCAAGTC 59.102 55.000 0.00 0.00 41.18 3.01
37 38 0.459237 CCTGCTACAGCCTCAAGTCG 60.459 60.000 0.00 0.00 41.18 4.18
38 39 1.079819 TGCTACAGCCTCAAGTCGC 60.080 57.895 0.00 0.00 41.18 5.19
39 40 1.216710 GCTACAGCCTCAAGTCGCT 59.783 57.895 0.00 0.00 35.10 4.93
40 41 0.804156 GCTACAGCCTCAAGTCGCTC 60.804 60.000 0.00 0.00 31.40 5.03
41 42 0.814457 CTACAGCCTCAAGTCGCTCT 59.186 55.000 0.00 0.00 31.40 4.09
42 43 1.203523 CTACAGCCTCAAGTCGCTCTT 59.796 52.381 0.00 0.00 36.75 2.85
43 44 0.394565 ACAGCCTCAAGTCGCTCTTT 59.605 50.000 0.00 0.00 33.63 2.52
44 45 0.795085 CAGCCTCAAGTCGCTCTTTG 59.205 55.000 0.00 0.00 33.63 2.77
45 46 0.952984 AGCCTCAAGTCGCTCTTTGC 60.953 55.000 0.00 0.00 33.63 3.68
55 56 1.358046 GCTCTTTGCGATCATGCCC 59.642 57.895 0.00 0.00 0.00 5.36
56 57 1.099879 GCTCTTTGCGATCATGCCCT 61.100 55.000 0.00 0.00 0.00 5.19
57 58 1.386533 CTCTTTGCGATCATGCCCTT 58.613 50.000 0.00 0.00 0.00 3.95
58 59 1.747355 CTCTTTGCGATCATGCCCTTT 59.253 47.619 0.00 0.00 0.00 3.11
59 60 2.165030 CTCTTTGCGATCATGCCCTTTT 59.835 45.455 0.00 0.00 0.00 2.27
60 61 2.562298 TCTTTGCGATCATGCCCTTTTT 59.438 40.909 0.00 0.00 0.00 1.94
61 62 2.367030 TTGCGATCATGCCCTTTTTG 57.633 45.000 0.00 0.00 0.00 2.44
62 63 1.543607 TGCGATCATGCCCTTTTTGA 58.456 45.000 0.00 0.00 0.00 2.69
63 64 1.473677 TGCGATCATGCCCTTTTTGAG 59.526 47.619 0.00 0.00 0.00 3.02
64 65 1.800286 GCGATCATGCCCTTTTTGAGC 60.800 52.381 0.00 0.00 0.00 4.26
65 66 1.532505 CGATCATGCCCTTTTTGAGCG 60.533 52.381 0.00 0.00 41.90 5.03
66 67 1.474077 GATCATGCCCTTTTTGAGCGT 59.526 47.619 0.00 0.00 0.00 5.07
67 68 0.881118 TCATGCCCTTTTTGAGCGTC 59.119 50.000 0.00 0.00 0.00 5.19
68 69 0.597568 CATGCCCTTTTTGAGCGTCA 59.402 50.000 0.00 0.00 0.00 4.35
69 70 1.000385 CATGCCCTTTTTGAGCGTCAA 60.000 47.619 0.00 0.00 34.03 3.18
70 71 0.383949 TGCCCTTTTTGAGCGTCAAC 59.616 50.000 0.76 0.00 35.89 3.18
71 72 0.383949 GCCCTTTTTGAGCGTCAACA 59.616 50.000 0.76 0.00 35.89 3.33
72 73 1.864029 GCCCTTTTTGAGCGTCAACAC 60.864 52.381 0.76 0.00 35.89 3.32
73 74 1.403679 CCCTTTTTGAGCGTCAACACA 59.596 47.619 0.76 0.00 35.89 3.72
74 75 2.034558 CCCTTTTTGAGCGTCAACACAT 59.965 45.455 0.76 0.00 35.89 3.21
75 76 3.044986 CCTTTTTGAGCGTCAACACATG 58.955 45.455 0.00 0.00 35.89 3.21
76 77 3.489059 CCTTTTTGAGCGTCAACACATGT 60.489 43.478 0.00 0.00 35.89 3.21
77 78 3.332761 TTTTGAGCGTCAACACATGTC 57.667 42.857 0.00 0.00 35.89 3.06
78 79 1.946745 TTGAGCGTCAACACATGTCA 58.053 45.000 0.00 0.00 30.26 3.58
79 80 2.168326 TGAGCGTCAACACATGTCAT 57.832 45.000 0.00 0.00 0.00 3.06
80 81 1.799994 TGAGCGTCAACACATGTCATG 59.200 47.619 11.41 11.41 0.00 3.07
81 82 1.800586 GAGCGTCAACACATGTCATGT 59.199 47.619 12.87 12.87 46.22 3.21
82 83 2.993220 GAGCGTCAACACATGTCATGTA 59.007 45.455 18.00 0.00 42.70 2.29
83 84 3.398406 AGCGTCAACACATGTCATGTAA 58.602 40.909 18.00 2.27 42.70 2.41
84 85 3.812609 AGCGTCAACACATGTCATGTAAA 59.187 39.130 18.00 1.93 42.70 2.01
85 86 4.274705 AGCGTCAACACATGTCATGTAAAA 59.725 37.500 18.00 2.26 42.70 1.52
86 87 4.973051 GCGTCAACACATGTCATGTAAAAA 59.027 37.500 18.00 2.61 42.70 1.94
87 88 5.108405 GCGTCAACACATGTCATGTAAAAAC 60.108 40.000 18.00 12.65 42.70 2.43
88 89 5.398122 CGTCAACACATGTCATGTAAAAACC 59.602 40.000 18.00 4.76 42.70 3.27
89 90 6.269315 GTCAACACATGTCATGTAAAAACCA 58.731 36.000 18.00 0.00 42.70 3.67
94 95 5.634439 CACATGTCATGTAAAAACCACCATG 59.366 40.000 18.00 0.00 42.70 3.66
108 109 2.823747 CCACCATGATAGGATGCATTGG 59.176 50.000 0.00 5.10 0.00 3.16
109 110 2.230508 CACCATGATAGGATGCATTGGC 59.769 50.000 10.57 0.00 41.68 4.52
133 140 6.202954 GCATTAGCCTTGTAATACTTGATCGT 59.797 38.462 0.00 0.00 33.58 3.73
152 159 0.834687 TCGGTCAGTTGGTTAGCCCT 60.835 55.000 0.00 0.00 0.00 5.19
154 161 0.400594 GGTCAGTTGGTTAGCCCTGT 59.599 55.000 0.00 0.00 0.00 4.00
186 193 1.255667 TGCCCACCCTAGTTCGAGTC 61.256 60.000 0.00 0.00 0.00 3.36
201 208 2.182030 GTCCCGACTCAGCCGAAG 59.818 66.667 0.00 0.00 0.00 3.79
253 260 3.370840 TGTCGTTAAGGGCTAGTCCTA 57.629 47.619 18.33 0.00 35.80 2.94
269 276 1.178276 CCTAGCTGGCCTCCGTATAG 58.822 60.000 3.32 0.00 0.00 1.31
283 290 5.280368 CCTCCGTATAGTAGACCACTATCCA 60.280 48.000 0.00 0.00 45.63 3.41
333 340 7.062333 ATGGTACAGCACGCTATCGTATCAT 62.062 44.000 7.57 7.57 46.42 2.45
386 393 1.081892 CTGAACGGAATGGCTCTGTG 58.918 55.000 0.00 0.00 43.28 3.66
387 394 0.396435 TGAACGGAATGGCTCTGTGT 59.604 50.000 0.00 0.00 43.28 3.72
525 539 0.109272 TAGCCGAACTCGCTGTTGAG 60.109 55.000 0.00 0.00 39.30 3.02
677 724 1.867865 TGCGCGTCAGATAAAACAACA 59.132 42.857 8.43 0.00 0.00 3.33
682 729 3.427503 GCGTCAGATAAAACAACATGGGG 60.428 47.826 0.00 0.00 0.00 4.96
710 757 5.371115 TGTCAGCAAAACTAGTTTATGCC 57.629 39.130 30.47 22.69 37.32 4.40
900 947 4.406648 ACATATTCCTCTGCATCACGAA 57.593 40.909 0.00 0.00 0.00 3.85
929 976 0.179018 ACTTGACTTCACCCTGCACC 60.179 55.000 0.00 0.00 0.00 5.01
941 988 0.392193 CCTGCACCTCCACAGTCATC 60.392 60.000 0.00 0.00 31.76 2.92
942 989 0.322648 CTGCACCTCCACAGTCATCA 59.677 55.000 0.00 0.00 0.00 3.07
943 990 0.986527 TGCACCTCCACAGTCATCAT 59.013 50.000 0.00 0.00 0.00 2.45
951 998 6.154192 CACCTCCACAGTCATCATATAGCTAT 59.846 42.308 11.77 11.77 0.00 2.97
975 1022 2.737252 GCCACTTCGTTGTCTTTCTAGG 59.263 50.000 0.00 0.00 0.00 3.02
976 1023 2.737252 CCACTTCGTTGTCTTTCTAGGC 59.263 50.000 0.00 0.00 0.00 3.93
1081 1128 0.317160 CTGGCCGGTAGCAATCGATA 59.683 55.000 2.29 0.00 46.50 2.92
1090 1137 5.005779 CCGGTAGCAATCGATATATCTTTGC 59.994 44.000 26.80 26.80 40.66 3.68
1161 1208 8.786826 TCTCTCAAACCAATAATAACGTTGAT 57.213 30.769 11.99 1.68 0.00 2.57
1189 1236 8.358148 AGTCGATTTATCTTCGCTAATTTAGGA 58.642 33.333 5.61 0.00 36.56 2.94
1307 1357 9.323963 GTAACTAGACTAAACTCGTCTTACAAC 57.676 37.037 0.00 0.00 41.62 3.32
1318 1368 6.108015 ACTCGTCTTACAACCAACAAAGTTA 58.892 36.000 0.00 0.00 0.00 2.24
1386 1436 0.314935 ATTTGCAGAAAGTGTGCCCG 59.685 50.000 0.00 0.00 40.43 6.13
1389 1439 2.664851 CAGAAAGTGTGCCCGCGA 60.665 61.111 8.23 0.00 0.00 5.87
1404 1454 2.782222 GCGAGAGTACATCCCGCCA 61.782 63.158 9.08 0.00 39.97 5.69
1722 1772 1.520342 GCGTCTGCTGGACATCCTC 60.520 63.158 10.10 0.00 44.70 3.71
1836 1886 0.961358 AGTACCTCGTGCTCTTCGCT 60.961 55.000 0.00 0.00 40.11 4.93
1879 1929 1.550524 TGCTGGTAGGTTCAGTAGCAG 59.449 52.381 5.20 5.20 45.05 4.24
1883 1933 2.637872 TGGTAGGTTCAGTAGCAGCTTT 59.362 45.455 0.00 0.00 0.00 3.51
1894 1945 7.801716 TCAGTAGCAGCTTTCTTTTTCTTTA 57.198 32.000 0.00 0.00 0.00 1.85
1896 1947 8.345565 TCAGTAGCAGCTTTCTTTTTCTTTAAG 58.654 33.333 0.00 0.00 0.00 1.85
1925 1976 1.617533 GGTTTCCCTCCGCCCAATTTA 60.618 52.381 0.00 0.00 0.00 1.40
1926 1977 2.172679 GTTTCCCTCCGCCCAATTTAA 58.827 47.619 0.00 0.00 0.00 1.52
1927 1978 1.842052 TTCCCTCCGCCCAATTTAAC 58.158 50.000 0.00 0.00 0.00 2.01
1928 1979 0.699399 TCCCTCCGCCCAATTTAACA 59.301 50.000 0.00 0.00 0.00 2.41
1929 1980 1.102978 CCCTCCGCCCAATTTAACAG 58.897 55.000 0.00 0.00 0.00 3.16
1931 1982 2.442413 CCTCCGCCCAATTTAACAGAA 58.558 47.619 0.00 0.00 0.00 3.02
1933 1984 3.366985 CCTCCGCCCAATTTAACAGAAAC 60.367 47.826 0.00 0.00 0.00 2.78
1935 1986 3.254657 TCCGCCCAATTTAACAGAAACAG 59.745 43.478 0.00 0.00 0.00 3.16
1936 1987 3.005367 CCGCCCAATTTAACAGAAACAGT 59.995 43.478 0.00 0.00 0.00 3.55
1952 2004 4.535526 AACAGTGGCAAGAAAACAAACT 57.464 36.364 0.00 0.00 0.00 2.66
1953 2005 3.848726 ACAGTGGCAAGAAAACAAACTG 58.151 40.909 0.00 0.00 39.49 3.16
1954 2006 3.258123 ACAGTGGCAAGAAAACAAACTGT 59.742 39.130 0.00 0.00 41.31 3.55
1955 2007 3.859386 CAGTGGCAAGAAAACAAACTGTC 59.141 43.478 0.00 0.00 31.21 3.51
1956 2008 3.119137 AGTGGCAAGAAAACAAACTGTCC 60.119 43.478 0.00 0.00 0.00 4.02
1958 2010 2.167487 GGCAAGAAAACAAACTGTCCCA 59.833 45.455 0.00 0.00 0.00 4.37
1959 2011 3.447742 GCAAGAAAACAAACTGTCCCAG 58.552 45.455 0.00 0.00 37.52 4.45
1960 2012 3.447742 CAAGAAAACAAACTGTCCCAGC 58.552 45.455 0.00 0.00 34.37 4.85
1962 2014 0.102300 AAAACAAACTGTCCCAGCGC 59.898 50.000 0.00 0.00 34.37 5.92
1963 2015 0.751643 AAACAAACTGTCCCAGCGCT 60.752 50.000 2.64 2.64 34.37 5.92
1964 2016 0.107831 AACAAACTGTCCCAGCGCTA 59.892 50.000 10.99 0.00 34.37 4.26
1965 2017 0.107831 ACAAACTGTCCCAGCGCTAA 59.892 50.000 10.99 0.00 34.37 3.09
1981 2033 1.668237 GCTAAGCAGAGCCAAAGTAGC 59.332 52.381 0.00 0.00 36.38 3.58
1999 2053 6.347859 AGTAGCTGAGCTAGTAACAACTTT 57.652 37.500 19.63 0.00 42.21 2.66
2001 2055 7.217906 AGTAGCTGAGCTAGTAACAACTTTTT 58.782 34.615 19.63 0.00 42.21 1.94
2032 2185 6.012683 ACAGAGGTCCTTGAACTACTACTCTA 60.013 42.308 0.00 0.00 32.10 2.43
2076 2229 3.803778 ACCACAGTTACGTTTCTAAACCG 59.196 43.478 0.00 0.00 35.51 4.44
2078 2231 4.149396 CCACAGTTACGTTTCTAAACCGAG 59.851 45.833 0.00 0.00 35.51 4.63
2079 2232 4.741676 CACAGTTACGTTTCTAAACCGAGT 59.258 41.667 0.00 0.00 35.51 4.18
2106 2272 2.359975 GTTGAGAACCCCGGCCTG 60.360 66.667 0.00 0.00 0.00 4.85
2112 2278 4.740822 AACCCCGGCCTGTGCATC 62.741 66.667 0.00 0.00 40.13 3.91
2203 2484 5.010012 ACAAATCCAAAAGACACACCAGATC 59.990 40.000 0.00 0.00 0.00 2.75
2215 2496 1.300931 CCAGATCCACATACGGCCG 60.301 63.158 26.86 26.86 0.00 6.13
2216 2497 1.739667 CAGATCCACATACGGCCGA 59.260 57.895 35.90 16.57 0.00 5.54
2265 2546 9.057089 GCCAATCAATGTAGGGCTATATATAAC 57.943 37.037 0.00 0.00 41.39 1.89
2272 2553 8.789767 ATGTAGGGCTATATATAACTCAGCAT 57.210 34.615 6.73 2.91 33.86 3.79
2311 2592 6.132658 TGAGGGGCAGCATAATATGTTTTAA 58.867 36.000 1.92 0.00 0.00 1.52
2318 2599 7.596248 GGCAGCATAATATGTTTTAATGTGAGG 59.404 37.037 1.92 0.00 0.00 3.86
2341 2622 6.477253 GGATCTACAAAATCCTATTCCCTCC 58.523 44.000 0.00 0.00 39.73 4.30
2342 2623 6.044404 GGATCTACAAAATCCTATTCCCTCCA 59.956 42.308 0.00 0.00 39.73 3.86
2343 2624 7.257199 GGATCTACAAAATCCTATTCCCTCCAT 60.257 40.741 0.00 0.00 39.73 3.41
2344 2625 8.757307 ATCTACAAAATCCTATTCCCTCCATA 57.243 34.615 0.00 0.00 0.00 2.74
2345 2626 8.575736 TCTACAAAATCCTATTCCCTCCATAA 57.424 34.615 0.00 0.00 0.00 1.90
2346 2627 8.437575 TCTACAAAATCCTATTCCCTCCATAAC 58.562 37.037 0.00 0.00 0.00 1.89
2347 2628 7.226059 ACAAAATCCTATTCCCTCCATAACT 57.774 36.000 0.00 0.00 0.00 2.24
2348 2629 7.652554 ACAAAATCCTATTCCCTCCATAACTT 58.347 34.615 0.00 0.00 0.00 2.66
2349 2630 8.787818 ACAAAATCCTATTCCCTCCATAACTTA 58.212 33.333 0.00 0.00 0.00 2.24
2350 2631 9.289782 CAAAATCCTATTCCCTCCATAACTTAG 57.710 37.037 0.00 0.00 0.00 2.18
2351 2632 8.582891 AAATCCTATTCCCTCCATAACTTAGT 57.417 34.615 0.00 0.00 0.00 2.24
2352 2633 9.684702 AAATCCTATTCCCTCCATAACTTAGTA 57.315 33.333 0.00 0.00 0.00 1.82
2353 2634 9.860393 AATCCTATTCCCTCCATAACTTAGTAT 57.140 33.333 0.00 0.00 0.00 2.12
2412 2693 9.917129 AAACATTTTATAAAAAGTTACCGAGGG 57.083 29.630 24.17 4.70 38.42 4.30
2413 2694 8.866970 ACATTTTATAAAAAGTTACCGAGGGA 57.133 30.769 14.35 0.00 0.00 4.20
2414 2695 8.953313 ACATTTTATAAAAAGTTACCGAGGGAG 58.047 33.333 14.35 0.00 0.00 4.30
2459 2740 3.190439 AGGGCCTAATTGTCCAAGTACT 58.810 45.455 2.82 0.00 0.00 2.73
2463 2744 5.105877 GGGCCTAATTGTCCAAGTACTTTTC 60.106 44.000 5.07 0.16 0.00 2.29
2478 2759 6.338937 AGTACTTTTCGTCTGTCTTCACTTT 58.661 36.000 0.00 0.00 0.00 2.66
2479 2760 5.470845 ACTTTTCGTCTGTCTTCACTTTG 57.529 39.130 0.00 0.00 0.00 2.77
2481 2762 5.292101 ACTTTTCGTCTGTCTTCACTTTGAG 59.708 40.000 0.00 0.00 0.00 3.02
2484 3272 5.707242 TCGTCTGTCTTCACTTTGAGTAT 57.293 39.130 0.00 0.00 0.00 2.12
2555 3345 9.591792 AATTTTAGTCACGTAACTTATACTCCC 57.408 33.333 0.00 0.00 0.00 4.30
2556 3346 7.944729 TTTAGTCACGTAACTTATACTCCCT 57.055 36.000 0.00 0.00 0.00 4.20
2557 3347 7.559590 TTAGTCACGTAACTTATACTCCCTC 57.440 40.000 0.00 0.00 0.00 4.30
2558 3348 4.886489 AGTCACGTAACTTATACTCCCTCC 59.114 45.833 0.00 0.00 0.00 4.30
2559 3349 3.879295 TCACGTAACTTATACTCCCTCCG 59.121 47.826 0.00 0.00 0.00 4.63
2560 3350 3.629398 CACGTAACTTATACTCCCTCCGT 59.371 47.826 0.00 0.00 0.00 4.69
2561 3351 3.879892 ACGTAACTTATACTCCCTCCGTC 59.120 47.826 0.00 0.00 0.00 4.79
2562 3352 3.251972 CGTAACTTATACTCCCTCCGTCC 59.748 52.174 0.00 0.00 0.00 4.79
2563 3353 2.378378 ACTTATACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
2564 3354 1.572415 ACTTATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
2565 3355 2.179424 ACTTATACTCCCTCCGTCCCAT 59.821 50.000 0.00 0.00 0.00 4.00
2566 3356 3.400322 ACTTATACTCCCTCCGTCCCATA 59.600 47.826 0.00 0.00 0.00 2.74
2567 3357 4.140853 ACTTATACTCCCTCCGTCCCATAA 60.141 45.833 0.00 0.00 0.00 1.90
2568 3358 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2569 3359 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2570 3360 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2571 3361 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2572 3362 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2573 3363 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2574 3364 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2575 3365 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2577 3367 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2578 3368 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2579 3369 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2580 3370 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2581 3371 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2613 3403 9.257651 ACTACACTAGTGTCAAAAACATCTTAC 57.742 33.333 31.11 0.00 43.74 2.34
2614 3404 9.256477 CTACACTAGTGTCAAAAACATCTTACA 57.744 33.333 31.11 7.72 43.74 2.41
2615 3405 8.677148 ACACTAGTGTCAAAAACATCTTACAT 57.323 30.769 22.95 0.00 40.24 2.29
2616 3406 9.120538 ACACTAGTGTCAAAAACATCTTACATT 57.879 29.630 22.95 0.00 40.24 2.71
2621 3411 9.295825 AGTGTCAAAAACATCTTACATTATGGA 57.704 29.630 0.00 0.00 40.80 3.41
2622 3412 9.906660 GTGTCAAAAACATCTTACATTATGGAA 57.093 29.630 0.00 0.00 40.80 3.53
2623 3413 9.906660 TGTCAAAAACATCTTACATTATGGAAC 57.093 29.630 0.00 0.00 31.20 3.62
2624 3414 9.061610 GTCAAAAACATCTTACATTATGGAACG 57.938 33.333 0.00 0.00 0.00 3.95
2625 3415 8.240682 TCAAAAACATCTTACATTATGGAACGG 58.759 33.333 0.00 0.00 0.00 4.44
2626 3416 7.931578 AAAACATCTTACATTATGGAACGGA 57.068 32.000 0.00 0.00 0.00 4.69
2627 3417 7.553881 AAACATCTTACATTATGGAACGGAG 57.446 36.000 0.00 0.00 0.00 4.63
2628 3418 5.611374 ACATCTTACATTATGGAACGGAGG 58.389 41.667 0.00 0.00 0.00 4.30
2629 3419 4.682778 TCTTACATTATGGAACGGAGGG 57.317 45.455 0.00 0.00 0.00 4.30
2630 3420 4.291792 TCTTACATTATGGAACGGAGGGA 58.708 43.478 0.00 0.00 0.00 4.20
2631 3421 4.344102 TCTTACATTATGGAACGGAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
2632 3422 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2633 3423 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
2643 3433 2.104281 ACGGAGGGAGTATATTGTTGGC 59.896 50.000 0.00 0.00 0.00 4.52
2662 3453 4.415596 TGGCCTAATTGATGGTCAAACTT 58.584 39.130 3.32 0.00 40.12 2.66
2665 3456 6.495181 TGGCCTAATTGATGGTCAAACTTAAA 59.505 34.615 3.32 0.00 40.12 1.52
2666 3457 7.015682 TGGCCTAATTGATGGTCAAACTTAAAA 59.984 33.333 3.32 0.00 40.12 1.52
2721 3512 3.549997 GCGGCATGCGTGATTTATT 57.450 47.368 12.44 0.00 0.00 1.40
2727 3518 5.211454 CGGCATGCGTGATTTATTCATTAA 58.789 37.500 12.44 0.00 36.54 1.40
2729 3520 6.363088 CGGCATGCGTGATTTATTCATTAAAT 59.637 34.615 12.44 0.00 42.05 1.40
2732 3523 8.754096 GCATGCGTGATTTATTCATTAAATTGA 58.246 29.630 10.93 0.00 39.96 2.57
2758 3549 4.409247 GGAGTATGTAACTGGATCCACCTT 59.591 45.833 11.44 7.74 39.07 3.50
2763 3554 7.993183 AGTATGTAACTGGATCCACCTTAAATG 59.007 37.037 11.44 0.49 36.93 2.32
2776 3567 5.447279 CCACCTTAAATGTTGTACGCAGATC 60.447 44.000 0.00 0.00 0.00 2.75
2878 3669 0.673644 CGTACAAGGAGGCCAAGGTG 60.674 60.000 5.01 0.00 0.00 4.00
2923 3714 2.587194 CTCCGCATCAAGGGCTCG 60.587 66.667 0.00 0.00 0.00 5.03
3064 3855 0.546267 ACTCCATGCACTGGGTCTCT 60.546 55.000 13.17 0.00 45.98 3.10
3294 4091 3.795688 ACAGTGAATGGAGTGGTGATT 57.204 42.857 0.00 0.00 0.00 2.57
3307 4107 1.227002 GTGATTCGGTCTCGCCCTC 60.227 63.158 0.00 0.00 36.13 4.30
3330 4130 3.807622 GCTAACACAAACTACTGCTGTCA 59.192 43.478 0.00 0.00 0.00 3.58
3346 4146 3.545481 CACCGTCTCATCGTGCGC 61.545 66.667 0.00 0.00 0.00 6.09
3385 4185 1.067915 TCCCGCAAAATAAAGCTGCAC 60.068 47.619 1.02 0.00 35.78 4.57
3435 4243 4.991687 TGTGTGTATGTTTGAGCACGAATA 59.008 37.500 0.00 0.00 34.86 1.75
3518 4329 9.911980 GTTTTATATCTAAGCGAAAACAGTACC 57.088 33.333 0.00 0.00 38.98 3.34
3564 4375 3.261962 ACAATACTCCCAACCCTAACCA 58.738 45.455 0.00 0.00 0.00 3.67
3570 4381 2.744709 CAACCCTAACCACCGCCG 60.745 66.667 0.00 0.00 0.00 6.46
3576 4387 4.382320 TAACCACCGCCGCCACTC 62.382 66.667 0.00 0.00 0.00 3.51
3739 4552 2.884663 TGTTTTGCGGCGTAATGTAG 57.115 45.000 11.97 0.00 0.00 2.74
3755 4568 9.783256 GCGTAATGTAGATTTTTCCAAATACTT 57.217 29.630 0.00 0.00 32.35 2.24
3758 4571 8.687824 AATGTAGATTTTTCCAAATACTTGCG 57.312 30.769 0.00 0.00 32.35 4.85
3765 4578 7.414814 TTTTTCCAAATACTTGCGAAATTCC 57.585 32.000 0.00 0.00 34.52 3.01
3774 4587 8.911247 AATACTTGCGAAATTCCTTTTGATAC 57.089 30.769 0.00 0.00 0.00 2.24
3780 4593 7.151308 TGCGAAATTCCTTTTGATACACATTT 58.849 30.769 0.00 0.00 0.00 2.32
3781 4594 7.328249 TGCGAAATTCCTTTTGATACACATTTC 59.672 33.333 0.00 0.00 0.00 2.17
3824 4637 9.558396 AATGAACATTTTTCCACATACATGTTT 57.442 25.926 2.30 0.00 39.39 2.83
3827 4640 8.954950 AACATTTTTCCACATACATGTTTGAA 57.045 26.923 21.17 5.92 39.39 2.69
3828 4641 8.364129 ACATTTTTCCACATACATGTTTGAAC 57.636 30.769 21.17 0.00 39.39 3.18
3829 4642 7.984050 ACATTTTTCCACATACATGTTTGAACA 59.016 29.630 21.17 0.00 44.06 3.18
3833 4646 8.954950 TTTCCACATACATGTTTGAACATTTT 57.045 26.923 21.17 0.80 46.95 1.82
3834 4647 8.954950 TTCCACATACATGTTTGAACATTTTT 57.045 26.923 21.17 0.00 46.95 1.94
3835 4648 8.586570 TCCACATACATGTTTGAACATTTTTC 57.413 30.769 21.17 0.00 46.95 2.29
3836 4649 8.420222 TCCACATACATGTTTGAACATTTTTCT 58.580 29.630 21.17 0.00 46.95 2.52
3837 4650 8.489559 CCACATACATGTTTGAACATTTTTCTG 58.510 33.333 21.17 6.33 46.95 3.02
3838 4651 9.247126 CACATACATGTTTGAACATTTTTCTGA 57.753 29.630 21.17 0.00 46.95 3.27
3839 4652 9.814899 ACATACATGTTTGAACATTTTTCTGAA 57.185 25.926 21.17 0.00 46.95 3.02
3937 4751 5.466058 AGCATTTTTGCGAAATTCATGAACA 59.534 32.000 11.07 0.50 40.27 3.18
3940 4754 8.117988 GCATTTTTGCGAAATTCATGAACATAT 58.882 29.630 11.07 0.00 0.00 1.78
3960 4774 9.492730 AACATATATTTGAAATCCTTGGACCTT 57.507 29.630 0.00 0.00 0.00 3.50
4133 4950 4.274950 CCATGAACAAAACTTCTACACCGT 59.725 41.667 0.00 0.00 0.00 4.83
4134 4951 4.868450 TGAACAAAACTTCTACACCGTG 57.132 40.909 0.00 0.00 0.00 4.94
4136 4953 4.330620 TGAACAAAACTTCTACACCGTGTC 59.669 41.667 7.63 0.00 0.00 3.67
4247 5066 9.475620 AAAAGGAAAGAAAAGAAAAGGTAGAGA 57.524 29.630 0.00 0.00 0.00 3.10
4248 5067 8.684386 AAGGAAAGAAAAGAAAAGGTAGAGAG 57.316 34.615 0.00 0.00 0.00 3.20
4258 5077 4.538746 AAAGGTAGAGAGGAAAGAACCG 57.461 45.455 0.00 0.00 34.73 4.44
4259 5078 3.453059 AGGTAGAGAGGAAAGAACCGA 57.547 47.619 0.00 0.00 34.73 4.69
4272 5091 3.173167 AACCGACGAACACCCCTGG 62.173 63.158 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.386078 GCAGGATGAGGTCAAGTCTATGA 59.614 47.826 0.00 0.00 39.69 2.15
1 2 3.387374 AGCAGGATGAGGTCAAGTCTATG 59.613 47.826 0.00 0.00 39.69 2.23
3 4 3.107402 AGCAGGATGAGGTCAAGTCTA 57.893 47.619 0.00 0.00 39.69 2.59
5 6 2.497675 TGTAGCAGGATGAGGTCAAGTC 59.502 50.000 0.00 0.00 39.69 3.01
6 7 2.499289 CTGTAGCAGGATGAGGTCAAGT 59.501 50.000 0.00 0.00 39.69 3.16
7 8 2.741228 GCTGTAGCAGGATGAGGTCAAG 60.741 54.545 0.00 0.00 39.69 3.02
8 9 1.208052 GCTGTAGCAGGATGAGGTCAA 59.792 52.381 0.00 0.00 39.69 3.18
9 10 0.826715 GCTGTAGCAGGATGAGGTCA 59.173 55.000 0.00 0.00 39.69 4.02
10 11 0.105778 GGCTGTAGCAGGATGAGGTC 59.894 60.000 6.18 0.00 44.36 3.85
11 12 0.326048 AGGCTGTAGCAGGATGAGGT 60.326 55.000 6.18 0.00 44.36 3.85
12 13 0.392336 GAGGCTGTAGCAGGATGAGG 59.608 60.000 6.18 0.00 44.36 3.86
13 14 1.117994 TGAGGCTGTAGCAGGATGAG 58.882 55.000 6.18 0.00 44.36 2.90
14 15 1.483827 CTTGAGGCTGTAGCAGGATGA 59.516 52.381 6.18 0.00 44.36 2.92
15 16 1.209019 ACTTGAGGCTGTAGCAGGATG 59.791 52.381 6.18 0.00 44.36 3.51
16 17 1.484240 GACTTGAGGCTGTAGCAGGAT 59.516 52.381 6.18 0.00 44.36 3.24
17 18 0.898320 GACTTGAGGCTGTAGCAGGA 59.102 55.000 6.18 0.00 44.36 3.86
18 19 0.459237 CGACTTGAGGCTGTAGCAGG 60.459 60.000 6.18 0.00 44.36 4.85
19 20 1.080995 GCGACTTGAGGCTGTAGCAG 61.081 60.000 6.18 0.00 44.36 4.24
20 21 1.079819 GCGACTTGAGGCTGTAGCA 60.080 57.895 6.18 0.00 44.36 3.49
21 22 0.804156 GAGCGACTTGAGGCTGTAGC 60.804 60.000 0.00 0.00 40.16 3.58
22 23 0.814457 AGAGCGACTTGAGGCTGTAG 59.186 55.000 0.00 0.00 40.16 2.74
23 24 1.257743 AAGAGCGACTTGAGGCTGTA 58.742 50.000 0.00 0.00 40.16 2.74
24 25 0.394565 AAAGAGCGACTTGAGGCTGT 59.605 50.000 0.00 0.00 40.16 4.40
25 26 0.795085 CAAAGAGCGACTTGAGGCTG 59.205 55.000 0.00 0.00 40.16 4.85
26 27 0.952984 GCAAAGAGCGACTTGAGGCT 60.953 55.000 0.00 0.00 43.42 4.58
27 28 1.499502 GCAAAGAGCGACTTGAGGC 59.500 57.895 0.00 2.51 38.98 4.70
37 38 1.099879 AGGGCATGATCGCAAAGAGC 61.100 55.000 0.00 0.00 40.87 4.09
38 39 1.386533 AAGGGCATGATCGCAAAGAG 58.613 50.000 0.00 0.00 0.00 2.85
39 40 1.838112 AAAGGGCATGATCGCAAAGA 58.162 45.000 0.00 0.00 0.00 2.52
40 41 2.660189 AAAAGGGCATGATCGCAAAG 57.340 45.000 0.00 0.00 0.00 2.77
41 42 2.298446 TCAAAAAGGGCATGATCGCAAA 59.702 40.909 0.00 0.00 0.00 3.68
42 43 1.891811 TCAAAAAGGGCATGATCGCAA 59.108 42.857 0.00 0.00 0.00 4.85
43 44 1.473677 CTCAAAAAGGGCATGATCGCA 59.526 47.619 0.00 0.00 0.00 5.10
44 45 1.800286 GCTCAAAAAGGGCATGATCGC 60.800 52.381 0.00 0.00 0.00 4.58
45 46 1.532505 CGCTCAAAAAGGGCATGATCG 60.533 52.381 0.00 0.00 0.00 3.69
46 47 1.474077 ACGCTCAAAAAGGGCATGATC 59.526 47.619 0.00 0.00 41.54 2.92
47 48 1.474077 GACGCTCAAAAAGGGCATGAT 59.526 47.619 0.00 0.00 41.54 2.45
48 49 0.881118 GACGCTCAAAAAGGGCATGA 59.119 50.000 0.00 0.00 41.54 3.07
49 50 0.597568 TGACGCTCAAAAAGGGCATG 59.402 50.000 0.00 0.00 41.54 4.06
50 51 1.000274 GTTGACGCTCAAAAAGGGCAT 60.000 47.619 2.65 0.00 38.22 4.40
51 52 0.383949 GTTGACGCTCAAAAAGGGCA 59.616 50.000 2.65 0.00 38.22 5.36
52 53 0.383949 TGTTGACGCTCAAAAAGGGC 59.616 50.000 2.65 0.00 38.22 5.19
53 54 1.403679 TGTGTTGACGCTCAAAAAGGG 59.596 47.619 2.65 0.00 38.22 3.95
54 55 2.842208 TGTGTTGACGCTCAAAAAGG 57.158 45.000 2.65 0.00 38.22 3.11
55 56 3.694734 ACATGTGTTGACGCTCAAAAAG 58.305 40.909 0.00 0.00 38.22 2.27
56 57 3.127721 TGACATGTGTTGACGCTCAAAAA 59.872 39.130 1.15 0.00 38.22 1.94
57 58 2.680339 TGACATGTGTTGACGCTCAAAA 59.320 40.909 1.15 0.00 38.22 2.44
58 59 2.284190 TGACATGTGTTGACGCTCAAA 58.716 42.857 1.15 0.00 38.22 2.69
59 60 1.946745 TGACATGTGTTGACGCTCAA 58.053 45.000 1.15 0.00 33.32 3.02
60 61 1.799994 CATGACATGTGTTGACGCTCA 59.200 47.619 1.15 0.00 0.00 4.26
61 62 1.800586 ACATGACATGTGTTGACGCTC 59.199 47.619 20.21 0.00 43.01 5.03
62 63 1.882912 ACATGACATGTGTTGACGCT 58.117 45.000 20.21 0.00 43.01 5.07
63 64 3.804518 TTACATGACATGTGTTGACGC 57.195 42.857 27.66 0.00 44.60 5.19
64 65 5.398122 GGTTTTTACATGACATGTGTTGACG 59.602 40.000 27.66 0.00 44.60 4.35
65 66 6.198216 GTGGTTTTTACATGACATGTGTTGAC 59.802 38.462 27.66 19.64 44.60 3.18
66 67 6.269315 GTGGTTTTTACATGACATGTGTTGA 58.731 36.000 27.66 7.92 44.60 3.18
67 68 5.461737 GGTGGTTTTTACATGACATGTGTTG 59.538 40.000 27.66 2.75 44.60 3.33
68 69 5.127845 TGGTGGTTTTTACATGACATGTGTT 59.872 36.000 27.66 6.79 44.60 3.32
69 70 4.646945 TGGTGGTTTTTACATGACATGTGT 59.353 37.500 27.66 9.00 44.60 3.72
70 71 5.193663 TGGTGGTTTTTACATGACATGTG 57.806 39.130 27.66 2.82 44.60 3.21
71 72 5.538053 TCATGGTGGTTTTTACATGACATGT 59.462 36.000 23.83 23.83 43.23 3.21
72 73 6.023357 TCATGGTGGTTTTTACATGACATG 57.977 37.500 14.02 14.02 43.23 3.21
77 78 7.428020 CATCCTATCATGGTGGTTTTTACATG 58.572 38.462 0.00 0.00 41.44 3.21
78 79 6.040842 GCATCCTATCATGGTGGTTTTTACAT 59.959 38.462 0.00 0.00 0.00 2.29
79 80 5.359576 GCATCCTATCATGGTGGTTTTTACA 59.640 40.000 0.00 0.00 0.00 2.41
80 81 5.359576 TGCATCCTATCATGGTGGTTTTTAC 59.640 40.000 0.00 0.00 0.00 2.01
81 82 5.514169 TGCATCCTATCATGGTGGTTTTTA 58.486 37.500 0.00 0.00 0.00 1.52
82 83 4.352009 TGCATCCTATCATGGTGGTTTTT 58.648 39.130 0.00 0.00 0.00 1.94
83 84 3.979911 TGCATCCTATCATGGTGGTTTT 58.020 40.909 0.00 0.00 0.00 2.43
84 85 3.668141 TGCATCCTATCATGGTGGTTT 57.332 42.857 0.00 0.00 0.00 3.27
85 86 3.889859 ATGCATCCTATCATGGTGGTT 57.110 42.857 0.00 0.00 0.00 3.67
86 87 3.493334 CAATGCATCCTATCATGGTGGT 58.507 45.455 0.00 0.00 0.00 4.16
87 88 2.823747 CCAATGCATCCTATCATGGTGG 59.176 50.000 0.00 0.00 0.00 4.61
88 89 2.230508 GCCAATGCATCCTATCATGGTG 59.769 50.000 11.86 0.00 37.47 4.17
89 90 2.158430 TGCCAATGCATCCTATCATGGT 60.158 45.455 11.86 0.00 44.23 3.55
108 109 6.202954 ACGATCAAGTATTACAAGGCTAATGC 59.797 38.462 0.00 0.00 38.76 3.56
109 110 7.358435 CGACGATCAAGTATTACAAGGCTAATG 60.358 40.741 0.00 0.00 0.00 1.90
111 112 5.975344 CGACGATCAAGTATTACAAGGCTAA 59.025 40.000 0.00 0.00 0.00 3.09
119 120 4.918037 ACTGACCGACGATCAAGTATTAC 58.082 43.478 0.00 0.00 0.00 1.89
121 122 4.174009 CAACTGACCGACGATCAAGTATT 58.826 43.478 0.00 0.00 0.00 1.89
130 131 0.038892 GCTAACCAACTGACCGACGA 60.039 55.000 0.00 0.00 0.00 4.20
133 140 0.834687 AGGGCTAACCAACTGACCGA 60.835 55.000 0.00 0.00 43.89 4.69
186 193 3.068691 TCCTTCGGCTGAGTCGGG 61.069 66.667 6.62 0.11 0.00 5.14
253 260 1.424302 TCTACTATACGGAGGCCAGCT 59.576 52.381 5.01 0.00 0.00 4.24
269 276 3.822167 GGTCTAGCTGGATAGTGGTCTAC 59.178 52.174 2.00 0.00 0.00 2.59
283 290 6.763610 GCAAAGTATATTGACTTGGTCTAGCT 59.236 38.462 0.00 0.00 39.62 3.32
367 374 1.081892 CACAGAGCCATTCCGTTCAG 58.918 55.000 0.00 0.00 0.00 3.02
451 460 1.352156 CCTGCACCGTCGAACTTAGC 61.352 60.000 0.00 0.00 0.00 3.09
525 539 9.924650 TGGTCTTTCTTAGTCTGTAAAAGTATC 57.075 33.333 0.00 0.00 0.00 2.24
677 724 2.380064 TTGCTGACAAGAAACCCCAT 57.620 45.000 0.00 0.00 0.00 4.00
682 729 8.958043 CATAAACTAGTTTTGCTGACAAGAAAC 58.042 33.333 25.07 0.00 37.04 2.78
900 947 5.365895 AGGGTGAAGTCAAGTAAGTACAAGT 59.634 40.000 0.00 0.00 0.00 3.16
929 976 7.064371 GCAAATAGCTATATGATGACTGTGGAG 59.936 40.741 6.68 0.00 41.15 3.86
941 988 6.017934 ACAACGAAGTGGCAAATAGCTATATG 60.018 38.462 6.68 0.00 45.00 1.78
942 989 6.055588 ACAACGAAGTGGCAAATAGCTATAT 58.944 36.000 6.68 0.00 45.00 0.86
943 990 5.424757 ACAACGAAGTGGCAAATAGCTATA 58.575 37.500 6.68 0.00 45.00 1.31
951 998 3.013921 AGAAAGACAACGAAGTGGCAAA 58.986 40.909 0.00 0.00 45.00 3.68
975 1022 2.421424 GTGTGTTCTTGATCTGATGGGC 59.579 50.000 0.00 0.00 0.00 5.36
976 1023 3.678289 TGTGTGTTCTTGATCTGATGGG 58.322 45.455 0.00 0.00 0.00 4.00
1131 1178 9.886132 ACGTTATTATTGGTTTGAGAGAACTAT 57.114 29.630 0.00 0.00 0.00 2.12
1132 1179 9.715121 AACGTTATTATTGGTTTGAGAGAACTA 57.285 29.630 0.00 0.00 0.00 2.24
1133 1180 8.504005 CAACGTTATTATTGGTTTGAGAGAACT 58.496 33.333 0.00 0.00 0.00 3.01
1155 1202 6.142480 AGCGAAGATAAATCGACTTATCAACG 59.858 38.462 24.02 24.89 42.76 4.10
1189 1236 2.172717 CCAAATTCTCCACCGGGTAGAT 59.827 50.000 6.32 0.00 34.93 1.98
1289 1336 5.663456 TGTTGGTTGTAAGACGAGTTTAGT 58.337 37.500 0.00 0.00 0.00 2.24
1290 1337 6.592798 TTGTTGGTTGTAAGACGAGTTTAG 57.407 37.500 0.00 0.00 0.00 1.85
1292 1339 5.413523 ACTTTGTTGGTTGTAAGACGAGTTT 59.586 36.000 0.00 0.00 0.00 2.66
1349 1399 8.811017 TCTGCAAATTGGAGGTCAAAATATTTA 58.189 29.630 14.37 0.00 39.05 1.40
1360 1410 3.068590 CACACTTTCTGCAAATTGGAGGT 59.931 43.478 14.37 2.12 36.40 3.85
1363 1413 2.224018 GGCACACTTTCTGCAAATTGGA 60.224 45.455 0.00 0.00 36.27 3.53
1364 1414 2.137523 GGCACACTTTCTGCAAATTGG 58.862 47.619 0.00 0.00 36.27 3.16
1389 1439 0.902984 TGTGTGGCGGGATGTACTCT 60.903 55.000 0.00 0.00 0.00 3.24
1404 1454 4.760047 GCCTCCGCCACGATGTGT 62.760 66.667 0.00 0.00 0.00 3.72
1920 1971 6.463995 TCTTGCCACTGTTTCTGTTAAATT 57.536 33.333 0.00 0.00 0.00 1.82
1925 1976 4.021544 TGTTTTCTTGCCACTGTTTCTGTT 60.022 37.500 0.00 0.00 0.00 3.16
1926 1977 3.509575 TGTTTTCTTGCCACTGTTTCTGT 59.490 39.130 0.00 0.00 0.00 3.41
1927 1978 4.108699 TGTTTTCTTGCCACTGTTTCTG 57.891 40.909 0.00 0.00 0.00 3.02
1928 1979 4.799564 TTGTTTTCTTGCCACTGTTTCT 57.200 36.364 0.00 0.00 0.00 2.52
1929 1980 4.929211 AGTTTGTTTTCTTGCCACTGTTTC 59.071 37.500 0.00 0.00 0.00 2.78
1931 1982 4.244862 CAGTTTGTTTTCTTGCCACTGTT 58.755 39.130 0.00 0.00 0.00 3.16
1933 1984 3.848726 ACAGTTTGTTTTCTTGCCACTG 58.151 40.909 0.00 0.00 36.93 3.66
1935 1986 3.186909 GGACAGTTTGTTTTCTTGCCAC 58.813 45.455 0.00 0.00 0.00 5.01
1936 1987 2.167487 GGGACAGTTTGTTTTCTTGCCA 59.833 45.455 0.00 0.00 0.00 4.92
1952 2004 2.230994 CTCTGCTTAGCGCTGGGACA 62.231 60.000 22.90 11.96 40.21 4.02
1953 2005 1.520342 CTCTGCTTAGCGCTGGGAC 60.520 63.158 22.90 7.42 40.21 4.46
1954 2006 2.895680 CTCTGCTTAGCGCTGGGA 59.104 61.111 22.90 13.10 40.21 4.37
1955 2007 2.894387 GCTCTGCTTAGCGCTGGG 60.894 66.667 22.90 13.65 40.70 4.45
1956 2008 2.894387 GGCTCTGCTTAGCGCTGG 60.894 66.667 22.90 14.04 43.74 4.85
1958 2010 1.003355 TTTGGCTCTGCTTAGCGCT 60.003 52.632 17.26 17.26 43.74 5.92
1959 2011 1.301677 ACTTTGGCTCTGCTTAGCGC 61.302 55.000 0.00 0.00 43.74 5.92
1960 2012 1.929836 CTACTTTGGCTCTGCTTAGCG 59.070 52.381 0.00 0.00 43.74 4.26
1962 2014 2.935201 CAGCTACTTTGGCTCTGCTTAG 59.065 50.000 0.00 0.00 38.03 2.18
1963 2015 2.567169 TCAGCTACTTTGGCTCTGCTTA 59.433 45.455 0.00 0.00 38.03 3.09
1964 2016 1.349026 TCAGCTACTTTGGCTCTGCTT 59.651 47.619 0.00 0.00 38.03 3.91
1965 2017 0.979665 TCAGCTACTTTGGCTCTGCT 59.020 50.000 0.00 0.00 38.03 4.24
2001 2055 5.888982 AGTTCAAGGACCTCTGTAGAAAA 57.111 39.130 0.00 0.00 0.00 2.29
2008 2062 5.258051 AGAGTAGTAGTTCAAGGACCTCTG 58.742 45.833 0.00 0.00 0.00 3.35
2032 2185 7.966204 GTGGTACGTAATGCAATGAAAGTTTAT 59.034 33.333 0.00 0.00 0.00 1.40
2042 2195 4.327898 CGTAACTGTGGTACGTAATGCAAT 59.672 41.667 0.00 0.00 33.11 3.56
2052 2205 5.107875 CGGTTTAGAAACGTAACTGTGGTAC 60.108 44.000 0.00 0.00 39.77 3.34
2086 2239 2.265904 GGCCGGGGTTCTCAACAAC 61.266 63.158 2.18 0.00 0.00 3.32
2088 2241 2.852075 AGGCCGGGGTTCTCAACA 60.852 61.111 2.18 0.00 0.00 3.33
2159 2440 9.547753 GATTTGTGTCACCATCTACTATTATGT 57.452 33.333 0.00 0.00 0.00 2.29
2160 2441 8.993121 GGATTTGTGTCACCATCTACTATTATG 58.007 37.037 0.00 0.00 0.00 1.90
2161 2442 8.713971 TGGATTTGTGTCACCATCTACTATTAT 58.286 33.333 0.00 0.00 0.00 1.28
2162 2443 8.084985 TGGATTTGTGTCACCATCTACTATTA 57.915 34.615 0.00 0.00 0.00 0.98
2163 2444 6.957631 TGGATTTGTGTCACCATCTACTATT 58.042 36.000 0.00 0.00 0.00 1.73
2164 2445 6.560003 TGGATTTGTGTCACCATCTACTAT 57.440 37.500 0.00 0.00 0.00 2.12
2165 2446 6.367374 TTGGATTTGTGTCACCATCTACTA 57.633 37.500 0.00 0.00 32.31 1.82
2166 2447 4.908601 TGGATTTGTGTCACCATCTACT 57.091 40.909 0.00 0.00 0.00 2.57
2167 2448 5.957842 TTTGGATTTGTGTCACCATCTAC 57.042 39.130 0.00 0.00 32.31 2.59
2203 2484 2.076622 CTCCTCTCGGCCGTATGTGG 62.077 65.000 27.15 23.39 0.00 4.17
2228 2509 3.952323 ACATTGATTGGCATCTCTTGAGG 59.048 43.478 0.00 0.00 0.00 3.86
2231 2512 4.277672 CCCTACATTGATTGGCATCTCTTG 59.722 45.833 0.00 0.00 0.00 3.02
2234 2515 2.555757 GCCCTACATTGATTGGCATCTC 59.444 50.000 9.22 0.00 41.76 2.75
2318 2599 7.079451 TGGAGGGAATAGGATTTTGTAGATC 57.921 40.000 0.00 0.00 0.00 2.75
2386 2667 9.917129 CCCTCGGTAACTTTTTATAAAATGTTT 57.083 29.630 31.01 21.03 40.91 2.83
2387 2668 9.299465 TCCCTCGGTAACTTTTTATAAAATGTT 57.701 29.630 29.74 29.74 43.87 2.71
2388 2669 8.866970 TCCCTCGGTAACTTTTTATAAAATGT 57.133 30.769 18.77 18.77 37.73 2.71
2389 2670 8.953313 ACTCCCTCGGTAACTTTTTATAAAATG 58.047 33.333 17.73 17.73 0.00 2.32
2397 2678 9.524496 AATTTTATACTCCCTCGGTAACTTTTT 57.476 29.630 0.00 0.00 0.00 1.94
2398 2679 9.170734 GAATTTTATACTCCCTCGGTAACTTTT 57.829 33.333 0.00 0.00 0.00 2.27
2399 2680 8.546322 AGAATTTTATACTCCCTCGGTAACTTT 58.454 33.333 0.00 0.00 0.00 2.66
2400 2681 8.087303 AGAATTTTATACTCCCTCGGTAACTT 57.913 34.615 0.00 0.00 0.00 2.66
2401 2682 7.672122 AGAATTTTATACTCCCTCGGTAACT 57.328 36.000 0.00 0.00 0.00 2.24
2402 2683 7.254692 GCAAGAATTTTATACTCCCTCGGTAAC 60.255 40.741 0.00 0.00 0.00 2.50
2403 2684 6.764560 GCAAGAATTTTATACTCCCTCGGTAA 59.235 38.462 0.00 0.00 0.00 2.85
2404 2685 6.126997 TGCAAGAATTTTATACTCCCTCGGTA 60.127 38.462 0.00 0.00 0.00 4.02
2405 2686 5.123936 GCAAGAATTTTATACTCCCTCGGT 58.876 41.667 0.00 0.00 0.00 4.69
2406 2687 5.123227 TGCAAGAATTTTATACTCCCTCGG 58.877 41.667 0.00 0.00 0.00 4.63
2407 2688 6.677781 TTGCAAGAATTTTATACTCCCTCG 57.322 37.500 0.00 0.00 0.00 4.63
2408 2689 6.460261 GGCTTGCAAGAATTTTATACTCCCTC 60.460 42.308 30.39 5.48 0.00 4.30
2409 2690 5.360999 GGCTTGCAAGAATTTTATACTCCCT 59.639 40.000 30.39 0.00 0.00 4.20
2410 2691 5.127031 TGGCTTGCAAGAATTTTATACTCCC 59.873 40.000 30.39 15.95 0.00 4.30
2411 2692 6.207691 TGGCTTGCAAGAATTTTATACTCC 57.792 37.500 30.39 16.14 0.00 3.85
2412 2693 8.532977 TTTTGGCTTGCAAGAATTTTATACTC 57.467 30.769 30.39 7.17 0.00 2.59
2413 2694 8.900983 TTTTTGGCTTGCAAGAATTTTATACT 57.099 26.923 30.39 0.00 0.00 2.12
2414 2695 8.229811 CCTTTTTGGCTTGCAAGAATTTTATAC 58.770 33.333 30.39 8.43 0.00 1.47
2447 2728 4.761975 ACAGACGAAAAGTACTTGGACAA 58.238 39.130 9.34 0.00 0.00 3.18
2459 2740 5.175859 ACTCAAAGTGAAGACAGACGAAAA 58.824 37.500 0.00 0.00 0.00 2.29
2463 2744 5.461526 TGATACTCAAAGTGAAGACAGACG 58.538 41.667 0.00 0.00 0.00 4.18
2478 2759 9.685276 ACAATTTCTACCATTCAATGATACTCA 57.315 29.630 0.00 0.00 0.00 3.41
2551 3341 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2552 3342 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2553 3343 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2554 3344 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2555 3345 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2556 3346 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2587 3377 9.257651 GTAAGATGTTTTTGACACTAGTGTAGT 57.742 33.333 27.98 6.32 45.05 2.73
2588 3378 9.256477 TGTAAGATGTTTTTGACACTAGTGTAG 57.744 33.333 27.98 2.52 45.05 2.74
2589 3379 9.772973 ATGTAAGATGTTTTTGACACTAGTGTA 57.227 29.630 27.98 11.50 45.05 2.90
2595 3385 9.295825 TCCATAATGTAAGATGTTTTTGACACT 57.704 29.630 0.00 0.00 42.04 3.55
2596 3386 9.906660 TTCCATAATGTAAGATGTTTTTGACAC 57.093 29.630 0.00 0.00 42.04 3.67
2597 3387 9.906660 GTTCCATAATGTAAGATGTTTTTGACA 57.093 29.630 0.00 0.00 43.71 3.58
2598 3388 9.061610 CGTTCCATAATGTAAGATGTTTTTGAC 57.938 33.333 0.00 0.00 0.00 3.18
2599 3389 8.240682 CCGTTCCATAATGTAAGATGTTTTTGA 58.759 33.333 0.00 0.00 0.00 2.69
2600 3390 8.240682 TCCGTTCCATAATGTAAGATGTTTTTG 58.759 33.333 0.00 0.00 0.00 2.44
2601 3391 8.343168 TCCGTTCCATAATGTAAGATGTTTTT 57.657 30.769 0.00 0.00 0.00 1.94
2602 3392 7.067008 CCTCCGTTCCATAATGTAAGATGTTTT 59.933 37.037 0.00 0.00 0.00 2.43
2603 3393 6.542370 CCTCCGTTCCATAATGTAAGATGTTT 59.458 38.462 0.00 0.00 0.00 2.83
2604 3394 6.055588 CCTCCGTTCCATAATGTAAGATGTT 58.944 40.000 0.00 0.00 0.00 2.71
2605 3395 5.454755 CCCTCCGTTCCATAATGTAAGATGT 60.455 44.000 0.00 0.00 0.00 3.06
2606 3396 4.997395 CCCTCCGTTCCATAATGTAAGATG 59.003 45.833 0.00 0.00 0.00 2.90
2607 3397 4.905456 TCCCTCCGTTCCATAATGTAAGAT 59.095 41.667 0.00 0.00 0.00 2.40
2608 3398 4.291792 TCCCTCCGTTCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
2609 3399 4.101119 ACTCCCTCCGTTCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
2610 3400 4.035112 ACTCCCTCCGTTCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
2611 3401 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2612 3402 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2613 3403 4.891992 ATACTCCCTCCGTTCCATAATG 57.108 45.455 0.00 0.00 0.00 1.90
2614 3404 6.500751 ACAATATACTCCCTCCGTTCCATAAT 59.499 38.462 0.00 0.00 0.00 1.28
2615 3405 5.842328 ACAATATACTCCCTCCGTTCCATAA 59.158 40.000 0.00 0.00 0.00 1.90
2616 3406 5.399991 ACAATATACTCCCTCCGTTCCATA 58.600 41.667 0.00 0.00 0.00 2.74
2617 3407 4.232091 ACAATATACTCCCTCCGTTCCAT 58.768 43.478 0.00 0.00 0.00 3.41
2618 3408 3.649843 ACAATATACTCCCTCCGTTCCA 58.350 45.455 0.00 0.00 0.00 3.53
2619 3409 4.377897 CAACAATATACTCCCTCCGTTCC 58.622 47.826 0.00 0.00 0.00 3.62
2620 3410 4.377897 CCAACAATATACTCCCTCCGTTC 58.622 47.826 0.00 0.00 0.00 3.95
2621 3411 3.433173 GCCAACAATATACTCCCTCCGTT 60.433 47.826 0.00 0.00 0.00 4.44
2622 3412 2.104281 GCCAACAATATACTCCCTCCGT 59.896 50.000 0.00 0.00 0.00 4.69
2623 3413 2.550208 GGCCAACAATATACTCCCTCCG 60.550 54.545 0.00 0.00 0.00 4.63
2624 3414 2.711547 AGGCCAACAATATACTCCCTCC 59.288 50.000 5.01 0.00 0.00 4.30
2625 3415 5.562298 TTAGGCCAACAATATACTCCCTC 57.438 43.478 5.01 0.00 0.00 4.30
2626 3416 6.102615 TCAATTAGGCCAACAATATACTCCCT 59.897 38.462 5.01 0.00 0.00 4.20
2627 3417 6.303839 TCAATTAGGCCAACAATATACTCCC 58.696 40.000 5.01 0.00 0.00 4.30
2628 3418 7.094205 CCATCAATTAGGCCAACAATATACTCC 60.094 40.741 5.01 0.00 0.00 3.85
2629 3419 7.448469 ACCATCAATTAGGCCAACAATATACTC 59.552 37.037 5.01 0.00 0.00 2.59
2630 3420 7.297614 ACCATCAATTAGGCCAACAATATACT 58.702 34.615 5.01 0.00 0.00 2.12
2631 3421 7.230510 TGACCATCAATTAGGCCAACAATATAC 59.769 37.037 5.01 0.00 0.00 1.47
2632 3422 7.293828 TGACCATCAATTAGGCCAACAATATA 58.706 34.615 5.01 0.00 0.00 0.86
2633 3423 6.135454 TGACCATCAATTAGGCCAACAATAT 58.865 36.000 5.01 0.00 0.00 1.28
2698 3489 0.319383 AATCACGCATGCCGCAAAAA 60.319 45.000 13.15 0.00 42.60 1.94
2699 3490 0.319383 AAATCACGCATGCCGCAAAA 60.319 45.000 13.15 0.00 42.60 2.44
2700 3491 0.523519 TAAATCACGCATGCCGCAAA 59.476 45.000 13.15 0.00 42.60 3.68
2701 3492 0.737804 ATAAATCACGCATGCCGCAA 59.262 45.000 13.15 0.00 42.60 4.85
2702 3493 0.737804 AATAAATCACGCATGCCGCA 59.262 45.000 13.15 0.00 42.60 5.69
2703 3494 1.268488 TGAATAAATCACGCATGCCGC 60.268 47.619 13.15 0.00 41.76 6.53
2704 3495 2.753989 TGAATAAATCACGCATGCCG 57.246 45.000 13.15 10.04 44.21 5.69
2705 3496 7.642071 ATTTAATGAATAAATCACGCATGCC 57.358 32.000 13.15 0.00 39.49 4.40
2706 3497 8.754096 TCAATTTAATGAATAAATCACGCATGC 58.246 29.630 7.91 7.91 42.15 4.06
2709 3500 8.793472 CGTTCAATTTAATGAATAAATCACGCA 58.207 29.630 0.00 0.00 42.15 5.24
2710 3501 8.259194 CCGTTCAATTTAATGAATAAATCACGC 58.741 33.333 11.14 0.00 42.15 5.34
2711 3502 9.497030 TCCGTTCAATTTAATGAATAAATCACG 57.503 29.630 0.00 10.33 42.15 4.35
2721 3512 9.661563 AGTTACATACTCCGTTCAATTTAATGA 57.338 29.630 0.00 0.00 28.23 2.57
2727 3518 6.045072 TCCAGTTACATACTCCGTTCAATT 57.955 37.500 0.00 0.00 33.85 2.32
2729 3520 5.394883 GGATCCAGTTACATACTCCGTTCAA 60.395 44.000 6.95 0.00 33.85 2.69
2732 3523 4.028131 TGGATCCAGTTACATACTCCGTT 58.972 43.478 11.44 0.00 33.85 4.44
2734 3525 3.243771 GGTGGATCCAGTTACATACTCCG 60.244 52.174 16.81 0.00 33.85 4.63
2742 3533 6.433093 ACAACATTTAAGGTGGATCCAGTTAC 59.567 38.462 16.81 2.62 39.02 2.50
2758 3549 2.605818 GCCGATCTGCGTACAACATTTA 59.394 45.455 0.00 0.00 38.67 1.40
2776 3567 1.227002 GAAAGGGTAGCTCTCGCCG 60.227 63.158 0.00 0.00 36.60 6.46
2791 3582 5.801531 TGTAGTAGTTGCTCCTGAAGAAA 57.198 39.130 0.00 0.00 0.00 2.52
2923 3714 0.742635 GGAAGTACTGGCTGAGCTGC 60.743 60.000 3.72 0.00 0.00 5.25
3163 3954 1.513373 GTCGTCGAGCGTGCACATA 60.513 57.895 18.64 0.00 42.13 2.29
3164 3955 2.805353 GTCGTCGAGCGTGCACAT 60.805 61.111 18.64 4.15 42.13 3.21
3294 4091 3.982316 TTAGCGAGGGCGAGACCGA 62.982 63.158 0.00 0.00 46.35 4.69
3307 4107 2.800544 ACAGCAGTAGTTTGTGTTAGCG 59.199 45.455 0.00 0.00 0.00 4.26
3385 4185 3.724508 ACTCATAGACAAGCAGATCCG 57.275 47.619 0.00 0.00 0.00 4.18
3435 4243 0.320697 CTTCCGAGAACCCCGAAACT 59.679 55.000 0.00 0.00 0.00 2.66
3518 4329 1.068541 GCTTGCGTGTAAGAAAAGGGG 60.069 52.381 1.68 0.00 0.00 4.79
3564 4375 4.681978 GTTCAGAGTGGCGGCGGT 62.682 66.667 9.78 0.00 0.00 5.68
3714 4527 4.271291 ACATTACGCCGCAAAACAAATTTT 59.729 33.333 0.00 0.00 38.61 1.82
3733 4546 8.519526 TCGCAAGTATTTGGAAAAATCTACATT 58.480 29.630 0.00 0.00 34.79 2.71
3739 4552 8.168626 GGAATTTCGCAAGTATTTGGAAAAATC 58.831 33.333 14.12 14.13 37.20 2.17
3755 4568 5.697473 TGTGTATCAAAAGGAATTTCGCA 57.303 34.783 0.00 0.00 0.00 5.10
3757 4570 8.638565 GTGAAATGTGTATCAAAAGGAATTTCG 58.361 33.333 0.00 0.00 36.19 3.46
3758 4571 9.474920 TGTGAAATGTGTATCAAAAGGAATTTC 57.525 29.630 0.00 0.00 34.76 2.17
3780 4593 9.814899 ATGTTCATTTGTAACTGAAAAATGTGA 57.185 25.926 7.11 0.00 40.53 3.58
3790 4603 8.417780 TGTGGAAAAATGTTCATTTGTAACTG 57.582 30.769 10.84 0.00 0.00 3.16
3907 4720 9.970243 CATGAATTTCGCAAAAATGCTTATAAA 57.030 25.926 0.00 0.00 0.00 1.40
4044 4861 9.651913 ATTTAAAGTATTTCATGCGTTCCAATT 57.348 25.926 0.00 0.00 40.09 2.32
4045 4862 9.086336 CATTTAAAGTATTTCATGCGTTCCAAT 57.914 29.630 0.00 0.00 40.09 3.16
4049 4866 8.667987 TGACATTTAAAGTATTTCATGCGTTC 57.332 30.769 0.00 0.00 40.09 3.95
4102 4919 9.528018 GTAGAAGTTTTGTTCATGGAATTTTCA 57.472 29.630 0.00 0.00 0.00 2.69
4103 4920 9.528018 TGTAGAAGTTTTGTTCATGGAATTTTC 57.472 29.630 0.00 0.00 0.00 2.29
4108 4925 5.008217 CGGTGTAGAAGTTTTGTTCATGGAA 59.992 40.000 0.00 0.00 0.00 3.53
4110 4927 4.274950 ACGGTGTAGAAGTTTTGTTCATGG 59.725 41.667 0.00 0.00 0.00 3.66
4113 4930 4.255301 ACACGGTGTAGAAGTTTTGTTCA 58.745 39.130 12.96 0.00 0.00 3.18
4114 4931 4.330620 TGACACGGTGTAGAAGTTTTGTTC 59.669 41.667 14.74 0.00 0.00 3.18
4115 4932 4.255301 TGACACGGTGTAGAAGTTTTGTT 58.745 39.130 14.74 0.00 0.00 2.83
4116 4933 3.864243 TGACACGGTGTAGAAGTTTTGT 58.136 40.909 14.74 0.00 0.00 2.83
4117 4934 3.869246 ACTGACACGGTGTAGAAGTTTTG 59.131 43.478 14.74 0.06 0.00 2.44
4118 4935 4.133013 ACTGACACGGTGTAGAAGTTTT 57.867 40.909 14.74 0.00 0.00 2.43
4225 5044 7.225011 TCCTCTCTACCTTTTCTTTTCTTTCC 58.775 38.462 0.00 0.00 0.00 3.13
4235 5054 4.930405 CGGTTCTTTCCTCTCTACCTTTTC 59.070 45.833 0.00 0.00 0.00 2.29
4236 5055 4.591924 TCGGTTCTTTCCTCTCTACCTTTT 59.408 41.667 0.00 0.00 0.00 2.27
4237 5056 4.021280 GTCGGTTCTTTCCTCTCTACCTTT 60.021 45.833 0.00 0.00 0.00 3.11
4239 5058 3.090790 GTCGGTTCTTTCCTCTCTACCT 58.909 50.000 0.00 0.00 0.00 3.08
4240 5059 2.159407 CGTCGGTTCTTTCCTCTCTACC 60.159 54.545 0.00 0.00 0.00 3.18
4241 5060 2.746362 TCGTCGGTTCTTTCCTCTCTAC 59.254 50.000 0.00 0.00 0.00 2.59
4242 5061 3.063510 TCGTCGGTTCTTTCCTCTCTA 57.936 47.619 0.00 0.00 0.00 2.43
4243 5062 1.906990 TCGTCGGTTCTTTCCTCTCT 58.093 50.000 0.00 0.00 0.00 3.10
4244 5063 2.288030 TGTTCGTCGGTTCTTTCCTCTC 60.288 50.000 0.00 0.00 0.00 3.20
4245 5064 1.684983 TGTTCGTCGGTTCTTTCCTCT 59.315 47.619 0.00 0.00 0.00 3.69
4246 5065 1.791204 GTGTTCGTCGGTTCTTTCCTC 59.209 52.381 0.00 0.00 0.00 3.71
4247 5066 1.539712 GGTGTTCGTCGGTTCTTTCCT 60.540 52.381 0.00 0.00 0.00 3.36
4248 5067 0.863799 GGTGTTCGTCGGTTCTTTCC 59.136 55.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.