Multiple sequence alignment - TraesCS3B01G154800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G154800 chr3B 100.000 2940 0 0 1 2940 147544395 147541456 0.000000e+00 5430.0
1 TraesCS3B01G154800 chr3A 90.800 1163 93 3 1 1149 114423592 114422430 0.000000e+00 1543.0
2 TraesCS3B01G154800 chr3A 91.803 427 25 7 2132 2551 727176954 727176531 1.170000e-163 586.0
3 TraesCS3B01G154800 chr3A 82.162 740 70 29 1399 2132 114422240 114421557 1.960000e-161 579.0
4 TraesCS3B01G154800 chr3A 85.909 220 19 7 2625 2839 114420872 114420660 1.060000e-54 224.0
5 TraesCS3B01G154800 chr3A 97.500 40 0 1 1218 1257 83020730 83020692 1.890000e-07 67.6
6 TraesCS3B01G154800 chr3A 89.362 47 1 3 1210 1256 714510497 714510539 4.090000e-04 56.5
7 TraesCS3B01G154800 chr3D 94.597 944 45 4 1 938 96392378 96391435 0.000000e+00 1456.0
8 TraesCS3B01G154800 chr3D 94.220 692 29 3 1292 1983 96391065 96390385 0.000000e+00 1046.0
9 TraesCS3B01G154800 chr3D 92.960 696 36 6 1292 1983 96365843 96365157 0.000000e+00 1002.0
10 TraesCS3B01G154800 chr3D 92.399 421 30 2 2132 2551 61053137 61052718 1.510000e-167 599.0
11 TraesCS3B01G154800 chr3D 93.438 320 16 1 980 1294 96391435 96391116 1.230000e-128 470.0
12 TraesCS3B01G154800 chr3D 91.005 189 7 6 2694 2882 96372843 96372665 2.260000e-61 246.0
13 TraesCS3B01G154800 chr3D 89.447 199 12 2 2684 2882 96358291 96358102 2.930000e-60 243.0
14 TraesCS3B01G154800 chr3D 95.495 111 5 0 1115 1225 96366053 96365943 8.370000e-41 178.0
15 TraesCS3B01G154800 chr3D 95.192 104 5 0 2595 2698 96387183 96387080 6.520000e-37 165.0
16 TraesCS3B01G154800 chr3D 92.857 112 7 1 2590 2700 96365104 96364993 8.430000e-36 161.0
17 TraesCS3B01G154800 chr6D 92.512 414 27 3 2132 2542 3319208 3319620 9.080000e-165 590.0
18 TraesCS3B01G154800 chr6D 97.500 40 1 0 1217 1256 51071593 51071554 5.260000e-08 69.4
19 TraesCS3B01G154800 chr6D 97.500 40 1 0 1217 1256 51346318 51346279 5.260000e-08 69.4
20 TraesCS3B01G154800 chr4B 91.765 425 30 3 2130 2551 132882419 132881997 1.170000e-163 586.0
21 TraesCS3B01G154800 chr2A 91.726 423 33 2 2131 2551 40245690 40245268 1.170000e-163 586.0
22 TraesCS3B01G154800 chr6A 91.745 424 30 5 2131 2552 39171416 39170996 4.220000e-163 584.0
23 TraesCS3B01G154800 chr6A 90.845 426 35 3 2130 2552 602356507 602356931 4.250000e-158 568.0
24 TraesCS3B01G154800 chr1D 91.395 430 29 6 2131 2557 203869480 203869904 1.520000e-162 582.0
25 TraesCS3B01G154800 chr7B 90.433 439 38 4 2122 2557 283900329 283900766 2.540000e-160 575.0
26 TraesCS3B01G154800 chr7B 93.333 45 3 0 2896 2940 496871413 496871369 1.890000e-07 67.6
27 TraesCS3B01G154800 chr7B 92.308 39 3 0 1218 1256 401556828 401556866 4.090000e-04 56.5
28 TraesCS3B01G154800 chr2D 100.000 37 0 0 1221 1257 302425705 302425669 5.260000e-08 69.4
29 TraesCS3B01G154800 chr7A 92.308 39 3 0 1218 1256 515018755 515018793 4.090000e-04 56.5
30 TraesCS3B01G154800 chr5D 88.889 45 5 0 2896 2940 545721926 545721970 4.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G154800 chr3B 147541456 147544395 2939 True 5430.00 5430 100.000000 1 2940 1 chr3B.!!$R1 2939
1 TraesCS3B01G154800 chr3A 114420660 114423592 2932 True 782.00 1543 86.290333 1 2839 3 chr3A.!!$R3 2838
2 TraesCS3B01G154800 chr3D 96387080 96392378 5298 True 784.25 1456 94.361750 1 2698 4 chr3D.!!$R5 2697
3 TraesCS3B01G154800 chr3D 96364993 96366053 1060 True 447.00 1002 93.770667 1115 2700 3 chr3D.!!$R4 1585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 451 0.460987 CCGACACAGCCTCTGAATCC 60.461 60.0 0.29 0.0 35.18 3.01 F
974 994 0.543174 AGGAGGTCAGCTTCGGTTCT 60.543 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1882 0.108804 ACAACGACAAGCGGATCGAT 60.109 50.0 12.48 0.0 46.49 3.59 R
2003 2134 0.170116 GCCGCATCAATTCGGTCAAA 59.830 50.0 3.15 0.0 46.79 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.094762 AGACGCAGGAAATGGTGTAC 57.905 50.000 0.00 0.00 0.00 2.90
125 126 3.423123 GCAACACACCTTCTCGTAAATCG 60.423 47.826 0.00 0.00 41.41 3.34
128 129 0.921347 CACCTTCTCGTAAATCGCCG 59.079 55.000 0.00 0.00 39.67 6.46
175 176 2.126888 CCAAACACGCACATCGCC 60.127 61.111 0.00 0.00 43.23 5.54
179 180 1.296056 AAACACGCACATCGCCTACC 61.296 55.000 0.00 0.00 43.23 3.18
290 291 2.638480 TTCCATCTATTCCAAGGCCG 57.362 50.000 0.00 0.00 0.00 6.13
406 407 4.514577 ATCCGAGCCGAGCAACCG 62.515 66.667 0.00 0.00 0.00 4.44
450 451 0.460987 CCGACACAGCCTCTGAATCC 60.461 60.000 0.29 0.00 35.18 3.01
636 637 1.526887 CTGGAAATGGAGGCGGCTA 59.473 57.895 13.24 0.00 0.00 3.93
638 639 1.227973 GGAAATGGAGGCGGCTAGG 60.228 63.158 13.24 0.00 0.00 3.02
733 746 1.028130 GCTTTCTGGATTAGGCTGCC 58.972 55.000 11.65 11.65 0.00 4.85
759 772 2.281345 CATCTGCCCCCTCGCATC 60.281 66.667 0.00 0.00 38.30 3.91
770 783 2.171870 CCCCTCGCATCCCTTAAAACTA 59.828 50.000 0.00 0.00 0.00 2.24
814 827 1.646189 GTCCTTTCTGCTCCATCGAC 58.354 55.000 0.00 0.00 0.00 4.20
822 835 1.590238 CTGCTCCATCGACGCTAAAAG 59.410 52.381 0.00 0.00 0.00 2.27
824 837 1.855360 GCTCCATCGACGCTAAAAGAG 59.145 52.381 0.00 0.00 0.00 2.85
826 839 1.822990 TCCATCGACGCTAAAAGAGGT 59.177 47.619 0.00 0.00 0.00 3.85
862 877 6.017687 ACGAGGGTGTTTATGTAAAACTTCAC 60.018 38.462 0.00 0.00 0.00 3.18
916 935 4.644234 TGAGAAAGAGGATAGAGCACTCAG 59.356 45.833 0.00 0.00 33.76 3.35
929 948 3.364549 AGCACTCAGAGAGTAAGAGCAT 58.635 45.455 3.79 0.00 41.37 3.79
944 964 5.939764 AAGAGCATACTGTCACTCCATTA 57.060 39.130 0.00 0.00 0.00 1.90
961 981 0.547712 TTAGAGGGCAGCAAGGAGGT 60.548 55.000 0.00 0.00 0.00 3.85
974 994 0.543174 AGGAGGTCAGCTTCGGTTCT 60.543 55.000 0.00 0.00 0.00 3.01
1037 1057 2.026542 TGCAGCATCACCAAATCTCTCT 60.027 45.455 0.00 0.00 0.00 3.10
1054 1074 2.628178 TCTCTCAGTCCTCTGCGAAAAA 59.372 45.455 0.00 0.00 41.10 1.94
1109 1129 8.723942 AGAGGTGATTATCAAACATTGTAGTC 57.276 34.615 0.00 0.00 0.00 2.59
1197 1255 5.296035 GCCTCGCTGGTTATACTTTTTGTAT 59.704 40.000 0.00 0.00 40.41 2.29
1229 1297 6.777213 ATGATACATACTATTCCCTCCGTC 57.223 41.667 0.00 0.00 0.00 4.79
1232 1300 2.090943 ACATACTATTCCCTCCGTCCCA 60.091 50.000 0.00 0.00 0.00 4.37
1245 1313 2.037511 TCCGTCCCAAATTACTTGTCGT 59.962 45.455 0.00 0.00 32.65 4.34
1298 1419 5.336770 CCATTGTAGTCTCTGCTGTTCACTA 60.337 44.000 0.00 0.00 0.00 2.74
1307 1428 4.569943 TCTGCTGTTCACTAGAAATCACC 58.430 43.478 0.00 0.00 35.08 4.02
1331 1452 6.403866 TTTTCTGCTCTTTGCCAGATTAAA 57.596 33.333 0.00 0.00 42.00 1.52
1415 1536 1.609072 GGCCTTTTGGTGAAGTCTGTC 59.391 52.381 0.00 0.00 42.99 3.51
1459 1580 1.615883 AGATATTGCTCTCCATCGCGT 59.384 47.619 5.77 0.00 0.00 6.01
1538 1659 2.290323 CGGGTCCTCCACTTCAAGAATT 60.290 50.000 0.00 0.00 34.36 2.17
1670 1791 1.959226 GGCTGGCACGTTCGAAGAA 60.959 57.895 0.00 0.00 45.90 2.52
1719 1840 7.606456 ACGGTAACTGAAAAACATCACAGATAT 59.394 33.333 0.00 0.00 34.88 1.63
1751 1882 4.253685 GTTTCCTTCGTTCTGGATCATCA 58.746 43.478 0.00 0.00 31.76 3.07
1752 1883 4.760530 TTCCTTCGTTCTGGATCATCAT 57.239 40.909 0.00 0.00 31.76 2.45
1753 1884 4.327982 TCCTTCGTTCTGGATCATCATC 57.672 45.455 0.00 0.00 0.00 2.92
1754 1885 3.055591 CCTTCGTTCTGGATCATCATCG 58.944 50.000 0.00 0.00 0.00 3.84
1939 2070 0.904865 ATCGTCTGAGGGGTGCTTGA 60.905 55.000 0.00 0.00 0.00 3.02
1959 2090 7.011389 TGCTTGATCGTCTGATAATTAACAAGG 59.989 37.037 0.00 0.00 33.16 3.61
1972 2103 1.056660 AACAAGGCTTCCTCTCCGAA 58.943 50.000 0.00 0.00 30.89 4.30
1988 2119 0.868406 CGAAACAGGAACAGGCAGAC 59.132 55.000 0.00 0.00 0.00 3.51
1989 2120 0.868406 GAAACAGGAACAGGCAGACG 59.132 55.000 0.00 0.00 0.00 4.18
1990 2121 1.166531 AAACAGGAACAGGCAGACGC 61.167 55.000 0.00 0.00 37.44 5.19
2001 2132 4.694233 CAGACGCCAGTGCTGCCT 62.694 66.667 0.00 0.00 34.43 4.75
2002 2133 4.694233 AGACGCCAGTGCTGCCTG 62.694 66.667 10.11 10.11 34.43 4.85
2003 2134 4.996434 GACGCCAGTGCTGCCTGT 62.996 66.667 14.25 0.27 34.43 4.00
2013 2144 0.537143 TGCTGCCTGTTTGACCGAAT 60.537 50.000 0.00 0.00 0.00 3.34
2050 2185 4.509915 TCGACTTTTCGTCTGTTGTTTC 57.490 40.909 0.00 0.00 46.01 2.78
2060 2195 4.573201 TCGTCTGTTGTTTCCTTTGTTAGG 59.427 41.667 0.00 0.00 46.27 2.69
2093 2228 1.074752 GGAAGAAGCTCTGCAGTTCG 58.925 55.000 14.67 4.87 0.00 3.95
2097 2232 2.344950 AGAAGCTCTGCAGTTCGATTG 58.655 47.619 14.67 0.00 0.00 2.67
2098 2233 2.028658 AGAAGCTCTGCAGTTCGATTGA 60.029 45.455 14.67 0.00 0.00 2.57
2108 2243 6.531594 TCTGCAGTTCGATTGAAGTTATGTAG 59.468 38.462 14.67 5.02 35.55 2.74
2109 2244 5.580691 TGCAGTTCGATTGAAGTTATGTAGG 59.419 40.000 0.00 0.00 35.55 3.18
2110 2245 5.810587 GCAGTTCGATTGAAGTTATGTAGGA 59.189 40.000 0.00 0.00 35.55 2.94
2111 2246 6.019479 GCAGTTCGATTGAAGTTATGTAGGAG 60.019 42.308 0.00 0.00 35.55 3.69
2112 2247 7.036220 CAGTTCGATTGAAGTTATGTAGGAGT 58.964 38.462 0.00 0.00 35.55 3.85
2113 2248 8.188799 CAGTTCGATTGAAGTTATGTAGGAGTA 58.811 37.037 0.00 0.00 35.55 2.59
2131 2266 8.989980 GTAGGAGTATAATGTTGGTTAATCAGC 58.010 37.037 0.00 0.00 0.00 4.26
2132 2267 6.706270 AGGAGTATAATGTTGGTTAATCAGCG 59.294 38.462 0.00 0.00 0.00 5.18
2133 2268 6.073222 GGAGTATAATGTTGGTTAATCAGCGG 60.073 42.308 0.00 0.00 0.00 5.52
2134 2269 6.588204 AGTATAATGTTGGTTAATCAGCGGA 58.412 36.000 0.00 0.00 0.00 5.54
2135 2270 7.224297 AGTATAATGTTGGTTAATCAGCGGAT 58.776 34.615 0.00 0.00 34.43 4.18
2136 2271 4.637483 AATGTTGGTTAATCAGCGGATG 57.363 40.909 0.00 0.00 32.92 3.51
2137 2272 3.066291 TGTTGGTTAATCAGCGGATGT 57.934 42.857 0.00 0.00 32.92 3.06
2138 2273 3.417101 TGTTGGTTAATCAGCGGATGTT 58.583 40.909 0.00 0.00 32.92 2.71
2139 2274 3.190327 TGTTGGTTAATCAGCGGATGTTG 59.810 43.478 0.00 0.00 32.92 3.33
2140 2275 3.066291 TGGTTAATCAGCGGATGTTGT 57.934 42.857 0.00 0.00 32.92 3.32
2141 2276 3.006940 TGGTTAATCAGCGGATGTTGTC 58.993 45.455 0.00 0.00 32.92 3.18
2142 2277 3.270877 GGTTAATCAGCGGATGTTGTCT 58.729 45.455 0.00 0.00 32.92 3.41
2143 2278 3.689649 GGTTAATCAGCGGATGTTGTCTT 59.310 43.478 0.00 0.00 32.92 3.01
2144 2279 4.156008 GGTTAATCAGCGGATGTTGTCTTT 59.844 41.667 0.00 0.00 32.92 2.52
2145 2280 3.837213 AATCAGCGGATGTTGTCTTTG 57.163 42.857 0.00 0.00 32.92 2.77
2146 2281 1.522668 TCAGCGGATGTTGTCTTTGG 58.477 50.000 0.00 0.00 0.00 3.28
2147 2282 1.071542 TCAGCGGATGTTGTCTTTGGA 59.928 47.619 0.00 0.00 0.00 3.53
2148 2283 1.466167 CAGCGGATGTTGTCTTTGGAG 59.534 52.381 0.00 0.00 0.00 3.86
2149 2284 0.804989 GCGGATGTTGTCTTTGGAGG 59.195 55.000 0.00 0.00 0.00 4.30
2150 2285 0.804989 CGGATGTTGTCTTTGGAGGC 59.195 55.000 0.00 0.00 0.00 4.70
2151 2286 1.177401 GGATGTTGTCTTTGGAGGCC 58.823 55.000 0.00 0.00 0.00 5.19
2152 2287 0.804989 GATGTTGTCTTTGGAGGCCG 59.195 55.000 0.00 0.00 0.00 6.13
2153 2288 0.400213 ATGTTGTCTTTGGAGGCCGA 59.600 50.000 0.00 0.00 0.00 5.54
2154 2289 0.250295 TGTTGTCTTTGGAGGCCGAG 60.250 55.000 0.00 0.00 0.00 4.63
2155 2290 1.302511 TTGTCTTTGGAGGCCGAGC 60.303 57.895 0.00 0.00 0.00 5.03
2156 2291 1.768684 TTGTCTTTGGAGGCCGAGCT 61.769 55.000 0.00 0.00 0.00 4.09
2157 2292 1.448717 GTCTTTGGAGGCCGAGCTC 60.449 63.158 2.73 2.73 0.00 4.09
2158 2293 2.124942 CTTTGGAGGCCGAGCTCC 60.125 66.667 8.47 0.00 40.05 4.70
2159 2294 2.927856 TTTGGAGGCCGAGCTCCA 60.928 61.111 8.47 7.35 46.84 3.86
2161 2296 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
2162 2297 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
2163 2298 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
2164 2299 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
2173 2308 3.558674 CTCCATGGAGCTCGGTTTT 57.441 52.632 28.45 0.00 35.31 2.43
2174 2309 1.089920 CTCCATGGAGCTCGGTTTTG 58.910 55.000 28.45 2.18 35.31 2.44
2175 2310 0.690192 TCCATGGAGCTCGGTTTTGA 59.310 50.000 11.44 0.00 0.00 2.69
2176 2311 1.073125 TCCATGGAGCTCGGTTTTGAA 59.927 47.619 11.44 0.00 0.00 2.69
2177 2312 1.885887 CCATGGAGCTCGGTTTTGAAA 59.114 47.619 5.56 0.00 0.00 2.69
2178 2313 2.295909 CCATGGAGCTCGGTTTTGAAAA 59.704 45.455 5.56 0.00 0.00 2.29
2179 2314 3.056607 CCATGGAGCTCGGTTTTGAAAAT 60.057 43.478 5.56 0.00 0.00 1.82
2180 2315 4.559153 CATGGAGCTCGGTTTTGAAAATT 58.441 39.130 7.83 0.00 0.00 1.82
2181 2316 4.664150 TGGAGCTCGGTTTTGAAAATTT 57.336 36.364 7.83 0.00 0.00 1.82
2182 2317 5.017294 TGGAGCTCGGTTTTGAAAATTTT 57.983 34.783 7.83 2.28 0.00 1.82
2183 2318 4.808364 TGGAGCTCGGTTTTGAAAATTTTG 59.192 37.500 8.47 0.00 0.00 2.44
2184 2319 5.047188 GGAGCTCGGTTTTGAAAATTTTGA 58.953 37.500 8.47 0.00 0.00 2.69
2185 2320 5.522097 GGAGCTCGGTTTTGAAAATTTTGAA 59.478 36.000 8.47 3.01 0.00 2.69
2186 2321 6.202762 GGAGCTCGGTTTTGAAAATTTTGAAT 59.797 34.615 8.47 0.00 0.00 2.57
2187 2322 7.254761 GGAGCTCGGTTTTGAAAATTTTGAATT 60.255 33.333 8.47 0.00 0.00 2.17
2188 2323 7.984391 AGCTCGGTTTTGAAAATTTTGAATTT 58.016 26.923 8.47 0.00 0.00 1.82
2189 2324 8.458052 AGCTCGGTTTTGAAAATTTTGAATTTT 58.542 25.926 8.47 10.24 34.30 1.82
2190 2325 8.522661 GCTCGGTTTTGAAAATTTTGAATTTTG 58.477 29.630 8.47 0.00 32.03 2.44
2191 2326 9.553418 CTCGGTTTTGAAAATTTTGAATTTTGT 57.447 25.926 8.47 0.00 32.03 2.83
2192 2327 9.548208 TCGGTTTTGAAAATTTTGAATTTTGTC 57.452 25.926 8.47 4.23 32.03 3.18
2193 2328 8.511505 CGGTTTTGAAAATTTTGAATTTTGTCG 58.488 29.630 8.47 2.19 32.03 4.35
2194 2329 9.548208 GGTTTTGAAAATTTTGAATTTTGTCGA 57.452 25.926 8.47 1.43 32.03 4.20
2257 2392 9.791801 AACATACATATACATGAAGGCATAACA 57.208 29.630 0.00 0.00 35.96 2.41
2258 2393 9.219603 ACATACATATACATGAAGGCATAACAC 57.780 33.333 0.00 0.00 35.96 3.32
2259 2394 9.218440 CATACATATACATGAAGGCATAACACA 57.782 33.333 0.00 0.00 35.96 3.72
2260 2395 7.496529 ACATATACATGAAGGCATAACACAC 57.503 36.000 0.00 0.00 35.96 3.82
2261 2396 7.053498 ACATATACATGAAGGCATAACACACA 58.947 34.615 0.00 0.00 35.96 3.72
2262 2397 7.720957 ACATATACATGAAGGCATAACACACAT 59.279 33.333 0.00 0.00 35.96 3.21
2263 2398 4.707030 ACATGAAGGCATAACACACATG 57.293 40.909 0.00 0.00 39.27 3.21
2264 2399 4.081406 ACATGAAGGCATAACACACATGT 58.919 39.130 0.00 0.00 40.84 3.21
2265 2400 4.082625 ACATGAAGGCATAACACACATGTG 60.083 41.667 24.25 24.25 42.90 3.21
2266 2401 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
2267 2402 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
2281 2416 6.704512 CACATGTGTGTAAATTTTTAGGGC 57.295 37.500 18.03 0.00 40.96 5.19
2282 2417 6.219473 CACATGTGTGTAAATTTTTAGGGCA 58.781 36.000 18.03 0.00 40.96 5.36
2283 2418 6.703607 CACATGTGTGTAAATTTTTAGGGCAA 59.296 34.615 18.03 0.00 40.96 4.52
2284 2419 7.225538 CACATGTGTGTAAATTTTTAGGGCAAA 59.774 33.333 18.03 0.00 40.96 3.68
2285 2420 7.770897 ACATGTGTGTAAATTTTTAGGGCAAAA 59.229 29.630 0.00 0.00 36.63 2.44
2286 2421 8.782144 CATGTGTGTAAATTTTTAGGGCAAAAT 58.218 29.630 0.00 0.00 37.86 1.82
2288 2423 9.832445 TGTGTGTAAATTTTTAGGGCAAAATAA 57.168 25.926 0.00 0.00 35.67 1.40
2298 2433 9.892130 TTTTTAGGGCAAAATAAGTTGAAAAGA 57.108 25.926 0.00 0.00 36.04 2.52
2299 2434 9.541143 TTTTAGGGCAAAATAAGTTGAAAAGAG 57.459 29.630 0.00 0.00 31.05 2.85
2300 2435 6.101650 AGGGCAAAATAAGTTGAAAAGAGG 57.898 37.500 0.00 0.00 0.00 3.69
2301 2436 5.012046 AGGGCAAAATAAGTTGAAAAGAGGG 59.988 40.000 0.00 0.00 0.00 4.30
2302 2437 5.011635 GGGCAAAATAAGTTGAAAAGAGGGA 59.988 40.000 0.00 0.00 0.00 4.20
2303 2438 6.295859 GGGCAAAATAAGTTGAAAAGAGGGAT 60.296 38.462 0.00 0.00 0.00 3.85
2304 2439 6.591448 GGCAAAATAAGTTGAAAAGAGGGATG 59.409 38.462 0.00 0.00 0.00 3.51
2305 2440 7.154656 GCAAAATAAGTTGAAAAGAGGGATGT 58.845 34.615 0.00 0.00 0.00 3.06
2306 2441 7.116805 GCAAAATAAGTTGAAAAGAGGGATGTG 59.883 37.037 0.00 0.00 0.00 3.21
2307 2442 5.904362 ATAAGTTGAAAAGAGGGATGTGC 57.096 39.130 0.00 0.00 0.00 4.57
2308 2443 3.228188 AGTTGAAAAGAGGGATGTGCA 57.772 42.857 0.00 0.00 0.00 4.57
2309 2444 3.565307 AGTTGAAAAGAGGGATGTGCAA 58.435 40.909 0.00 0.00 0.00 4.08
2310 2445 3.960102 AGTTGAAAAGAGGGATGTGCAAA 59.040 39.130 0.00 0.00 0.00 3.68
2311 2446 4.405358 AGTTGAAAAGAGGGATGTGCAAAA 59.595 37.500 0.00 0.00 0.00 2.44
2312 2447 5.104982 AGTTGAAAAGAGGGATGTGCAAAAA 60.105 36.000 0.00 0.00 0.00 1.94
2354 2489 8.821686 TTTTAACACATGATACCATTCATCCT 57.178 30.769 0.00 0.00 34.09 3.24
2355 2490 8.821686 TTTAACACATGATACCATTCATCCTT 57.178 30.769 0.00 0.00 34.09 3.36
2356 2491 6.949352 AACACATGATACCATTCATCCTTC 57.051 37.500 0.00 0.00 34.09 3.46
2357 2492 5.380043 ACACATGATACCATTCATCCTTCC 58.620 41.667 0.00 0.00 34.09 3.46
2358 2493 5.103982 ACACATGATACCATTCATCCTTCCA 60.104 40.000 0.00 0.00 34.09 3.53
2359 2494 6.008331 CACATGATACCATTCATCCTTCCAT 58.992 40.000 0.00 0.00 34.09 3.41
2360 2495 6.008331 ACATGATACCATTCATCCTTCCATG 58.992 40.000 0.00 0.00 34.09 3.66
2361 2496 4.401022 TGATACCATTCATCCTTCCATGC 58.599 43.478 0.00 0.00 0.00 4.06
2362 2497 2.077687 ACCATTCATCCTTCCATGCC 57.922 50.000 0.00 0.00 0.00 4.40
2363 2498 1.288633 ACCATTCATCCTTCCATGCCA 59.711 47.619 0.00 0.00 0.00 4.92
2364 2499 2.090943 ACCATTCATCCTTCCATGCCAT 60.091 45.455 0.00 0.00 0.00 4.40
2365 2500 2.299013 CCATTCATCCTTCCATGCCATG 59.701 50.000 0.00 0.00 0.00 3.66
2366 2501 3.227614 CATTCATCCTTCCATGCCATGA 58.772 45.455 6.18 0.00 0.00 3.07
2367 2502 3.385314 TTCATCCTTCCATGCCATGAA 57.615 42.857 6.18 0.00 32.33 2.57
2368 2503 3.605726 TCATCCTTCCATGCCATGAAT 57.394 42.857 6.18 0.00 0.00 2.57
2369 2504 3.918566 TCATCCTTCCATGCCATGAATT 58.081 40.909 6.18 0.00 0.00 2.17
2370 2505 4.291792 TCATCCTTCCATGCCATGAATTT 58.708 39.130 6.18 0.00 0.00 1.82
2371 2506 4.100344 TCATCCTTCCATGCCATGAATTTG 59.900 41.667 6.18 0.00 0.00 2.32
2372 2507 3.443052 TCCTTCCATGCCATGAATTTGT 58.557 40.909 6.18 0.00 0.00 2.83
2373 2508 3.839490 TCCTTCCATGCCATGAATTTGTT 59.161 39.130 6.18 0.00 0.00 2.83
2374 2509 4.286549 TCCTTCCATGCCATGAATTTGTTT 59.713 37.500 6.18 0.00 0.00 2.83
2375 2510 5.005094 CCTTCCATGCCATGAATTTGTTTT 58.995 37.500 6.18 0.00 0.00 2.43
2376 2511 5.474189 CCTTCCATGCCATGAATTTGTTTTT 59.526 36.000 6.18 0.00 0.00 1.94
2398 2533 7.879962 TTTTCGTACAAGTCACATTTTAACG 57.120 32.000 0.00 0.00 0.00 3.18
2399 2534 6.586868 TTCGTACAAGTCACATTTTAACGT 57.413 33.333 0.00 0.00 0.00 3.99
2400 2535 6.586868 TCGTACAAGTCACATTTTAACGTT 57.413 33.333 5.88 5.88 0.00 3.99
2401 2536 7.002816 TCGTACAAGTCACATTTTAACGTTT 57.997 32.000 5.91 0.00 0.00 3.60
2402 2537 7.462731 TCGTACAAGTCACATTTTAACGTTTT 58.537 30.769 5.91 0.00 0.00 2.43
2403 2538 7.961827 TCGTACAAGTCACATTTTAACGTTTTT 59.038 29.630 5.91 0.00 0.00 1.94
2452 2587 9.893305 AGAAATAACATACTTGTTTACTTGCAC 57.107 29.630 0.00 0.00 43.57 4.57
2453 2588 9.672086 GAAATAACATACTTGTTTACTTGCACA 57.328 29.630 0.00 0.00 43.57 4.57
2457 2592 8.940768 AACATACTTGTTTACTTGCACAATTT 57.059 26.923 0.00 0.00 43.57 1.82
2458 2593 8.940768 ACATACTTGTTTACTTGCACAATTTT 57.059 26.923 0.00 0.00 32.50 1.82
2459 2594 9.377312 ACATACTTGTTTACTTGCACAATTTTT 57.623 25.926 0.00 0.00 32.50 1.94
2534 2669 3.554342 CTCCATGGCTCCCGGGAG 61.554 72.222 41.29 41.29 44.56 4.30
2560 2695 0.179108 GCCCGCTCTCGTTAATCAGT 60.179 55.000 0.00 0.00 0.00 3.41
2563 2698 2.603560 CCCGCTCTCGTTAATCAGTTTC 59.396 50.000 0.00 0.00 0.00 2.78
2590 2725 8.948631 ATCTATTCTTGCATCTAGTTTTTCGA 57.051 30.769 0.00 0.00 0.00 3.71
2591 2726 8.412608 TCTATTCTTGCATCTAGTTTTTCGAG 57.587 34.615 0.00 0.00 0.00 4.04
2598 5880 8.506168 TTGCATCTAGTTTTTCGAGGATTATT 57.494 30.769 0.00 0.00 0.00 1.40
2692 6598 4.133796 GGCCGTCCTTTGCATGGC 62.134 66.667 0.00 0.00 44.98 4.40
2712 6618 4.141846 TGGCCTGTTTTGTTGCTTTCATTA 60.142 37.500 3.32 0.00 0.00 1.90
2719 6625 6.362016 TGTTTTGTTGCTTTCATTAGCGTATG 59.638 34.615 0.00 0.00 44.18 2.39
2723 6629 3.867857 TGCTTTCATTAGCGTATGGTCA 58.132 40.909 0.00 0.00 44.18 4.02
2726 6632 4.273480 GCTTTCATTAGCGTATGGTCATGT 59.727 41.667 7.89 0.00 30.96 3.21
2765 6675 9.460019 AATTTGTTTTCTCCCTTTTGATTGAAA 57.540 25.926 0.00 0.00 0.00 2.69
2766 6676 9.631257 ATTTGTTTTCTCCCTTTTGATTGAAAT 57.369 25.926 0.00 0.00 0.00 2.17
2769 6679 9.541143 TGTTTTCTCCCTTTTGATTGAAATAAC 57.459 29.630 0.00 0.00 0.00 1.89
2770 6680 9.764363 GTTTTCTCCCTTTTGATTGAAATAACT 57.236 29.630 0.00 0.00 0.00 2.24
2808 6718 5.178623 AGCGTTCACTTCGACATTATGAAAA 59.821 36.000 0.00 0.00 31.45 2.29
2839 6749 9.525826 AGAATTGGAGTAGAAAGAATGTTGAAT 57.474 29.630 0.00 0.00 0.00 2.57
2840 6750 9.780413 GAATTGGAGTAGAAAGAATGTTGAATC 57.220 33.333 0.00 0.00 0.00 2.52
2841 6751 8.868522 ATTGGAGTAGAAAGAATGTTGAATCA 57.131 30.769 0.00 0.00 0.00 2.57
2842 6752 8.868522 TTGGAGTAGAAAGAATGTTGAATCAT 57.131 30.769 0.00 0.00 0.00 2.45
2843 6753 8.498054 TGGAGTAGAAAGAATGTTGAATCATC 57.502 34.615 0.00 0.00 0.00 2.92
2844 6754 8.102676 TGGAGTAGAAAGAATGTTGAATCATCA 58.897 33.333 0.00 0.00 0.00 3.07
2845 6755 8.610896 GGAGTAGAAAGAATGTTGAATCATCAG 58.389 37.037 0.41 0.00 36.78 2.90
2846 6756 9.160496 GAGTAGAAAGAATGTTGAATCATCAGT 57.840 33.333 0.41 0.00 36.78 3.41
2847 6757 8.944029 AGTAGAAAGAATGTTGAATCATCAGTG 58.056 33.333 0.00 0.00 36.78 3.66
2848 6758 7.154435 AGAAAGAATGTTGAATCATCAGTGG 57.846 36.000 0.00 0.00 36.78 4.00
2849 6759 6.718454 AGAAAGAATGTTGAATCATCAGTGGT 59.282 34.615 0.00 0.00 36.78 4.16
2850 6760 7.884877 AGAAAGAATGTTGAATCATCAGTGGTA 59.115 33.333 0.00 0.00 36.78 3.25
2851 6761 8.408043 AAAGAATGTTGAATCATCAGTGGTAA 57.592 30.769 0.00 0.00 36.78 2.85
2852 6762 8.408043 AAGAATGTTGAATCATCAGTGGTAAA 57.592 30.769 0.00 0.00 36.78 2.01
2853 6763 8.408043 AGAATGTTGAATCATCAGTGGTAAAA 57.592 30.769 0.00 0.00 36.78 1.52
2854 6764 8.859090 AGAATGTTGAATCATCAGTGGTAAAAA 58.141 29.630 0.00 0.00 36.78 1.94
2855 6765 9.643693 GAATGTTGAATCATCAGTGGTAAAAAT 57.356 29.630 0.00 0.00 36.78 1.82
2881 6791 7.687941 AAATATAACCACAGAGAAACACTGG 57.312 36.000 0.00 0.00 39.38 4.00
2882 6792 4.706842 ATAACCACAGAGAAACACTGGT 57.293 40.909 0.00 0.00 39.38 4.00
2883 6793 2.332063 ACCACAGAGAAACACTGGTG 57.668 50.000 0.00 0.00 39.38 4.17
2884 6794 0.947244 CCACAGAGAAACACTGGTGC 59.053 55.000 0.17 0.00 39.38 5.01
2885 6795 0.947244 CACAGAGAAACACTGGTGCC 59.053 55.000 0.17 0.00 39.38 5.01
2886 6796 0.839946 ACAGAGAAACACTGGTGCCT 59.160 50.000 0.17 0.00 39.38 4.75
2887 6797 1.212935 ACAGAGAAACACTGGTGCCTT 59.787 47.619 0.17 0.00 39.38 4.35
2888 6798 2.438021 ACAGAGAAACACTGGTGCCTTA 59.562 45.455 0.17 0.00 39.38 2.69
2889 6799 3.118038 ACAGAGAAACACTGGTGCCTTAA 60.118 43.478 0.17 0.00 39.38 1.85
2890 6800 4.074970 CAGAGAAACACTGGTGCCTTAAT 58.925 43.478 0.17 0.00 0.00 1.40
2891 6801 4.520492 CAGAGAAACACTGGTGCCTTAATT 59.480 41.667 0.17 0.00 0.00 1.40
2892 6802 4.762251 AGAGAAACACTGGTGCCTTAATTC 59.238 41.667 0.17 0.00 0.00 2.17
2893 6803 4.469657 AGAAACACTGGTGCCTTAATTCA 58.530 39.130 0.17 0.00 0.00 2.57
2894 6804 5.079643 AGAAACACTGGTGCCTTAATTCAT 58.920 37.500 0.17 0.00 0.00 2.57
2895 6805 5.539955 AGAAACACTGGTGCCTTAATTCATT 59.460 36.000 0.17 0.00 0.00 2.57
2896 6806 4.789012 ACACTGGTGCCTTAATTCATTG 57.211 40.909 0.17 0.00 0.00 2.82
2897 6807 4.406456 ACACTGGTGCCTTAATTCATTGA 58.594 39.130 0.17 0.00 0.00 2.57
2898 6808 4.460382 ACACTGGTGCCTTAATTCATTGAG 59.540 41.667 0.17 0.00 0.00 3.02
2899 6809 3.445096 ACTGGTGCCTTAATTCATTGAGC 59.555 43.478 0.00 0.00 0.00 4.26
2900 6810 3.698040 CTGGTGCCTTAATTCATTGAGCT 59.302 43.478 0.00 0.00 0.00 4.09
2901 6811 3.696051 TGGTGCCTTAATTCATTGAGCTC 59.304 43.478 6.82 6.82 0.00 4.09
2902 6812 3.950395 GGTGCCTTAATTCATTGAGCTCT 59.050 43.478 16.19 0.00 0.00 4.09
2903 6813 4.400567 GGTGCCTTAATTCATTGAGCTCTT 59.599 41.667 16.19 1.87 0.00 2.85
2904 6814 5.105595 GGTGCCTTAATTCATTGAGCTCTTT 60.106 40.000 16.19 0.00 0.00 2.52
2905 6815 6.393171 GTGCCTTAATTCATTGAGCTCTTTT 58.607 36.000 16.19 2.44 0.00 2.27
2906 6816 7.362920 GGTGCCTTAATTCATTGAGCTCTTTTA 60.363 37.037 16.19 0.00 0.00 1.52
2907 6817 8.193438 GTGCCTTAATTCATTGAGCTCTTTTAT 58.807 33.333 16.19 0.47 0.00 1.40
2908 6818 8.192774 TGCCTTAATTCATTGAGCTCTTTTATG 58.807 33.333 16.19 12.64 0.00 1.90
2909 6819 7.650903 GCCTTAATTCATTGAGCTCTTTTATGG 59.349 37.037 16.19 13.84 0.00 2.74
2910 6820 8.689972 CCTTAATTCATTGAGCTCTTTTATGGT 58.310 33.333 16.19 4.17 0.00 3.55
2916 6826 7.999679 TCATTGAGCTCTTTTATGGTTATTGG 58.000 34.615 16.19 0.00 0.00 3.16
2917 6827 5.835113 TGAGCTCTTTTATGGTTATTGGC 57.165 39.130 16.19 0.00 0.00 4.52
2918 6828 4.335315 TGAGCTCTTTTATGGTTATTGGCG 59.665 41.667 16.19 0.00 0.00 5.69
2919 6829 4.270008 AGCTCTTTTATGGTTATTGGCGT 58.730 39.130 0.00 0.00 0.00 5.68
2920 6830 5.433526 AGCTCTTTTATGGTTATTGGCGTA 58.566 37.500 0.00 0.00 0.00 4.42
2921 6831 5.527582 AGCTCTTTTATGGTTATTGGCGTAG 59.472 40.000 0.00 0.00 0.00 3.51
2922 6832 5.296035 GCTCTTTTATGGTTATTGGCGTAGT 59.704 40.000 0.00 0.00 0.00 2.73
2923 6833 6.480981 GCTCTTTTATGGTTATTGGCGTAGTA 59.519 38.462 0.00 0.00 0.00 1.82
2924 6834 7.517893 GCTCTTTTATGGTTATTGGCGTAGTAC 60.518 40.741 0.00 0.00 0.00 2.73
2925 6835 7.558604 TCTTTTATGGTTATTGGCGTAGTACT 58.441 34.615 0.00 0.00 0.00 2.73
2926 6836 7.493320 TCTTTTATGGTTATTGGCGTAGTACTG 59.507 37.037 5.39 0.00 0.00 2.74
2927 6837 3.530265 TGGTTATTGGCGTAGTACTGG 57.470 47.619 5.39 0.00 0.00 4.00
2928 6838 2.168936 TGGTTATTGGCGTAGTACTGGG 59.831 50.000 5.39 0.00 0.00 4.45
2929 6839 2.431782 GGTTATTGGCGTAGTACTGGGA 59.568 50.000 5.39 0.00 0.00 4.37
2930 6840 3.492137 GGTTATTGGCGTAGTACTGGGAG 60.492 52.174 5.39 0.00 0.00 4.30
2931 6841 1.861982 ATTGGCGTAGTACTGGGAGT 58.138 50.000 5.39 0.00 0.00 3.85
2932 6842 2.512692 TTGGCGTAGTACTGGGAGTA 57.487 50.000 5.39 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.044305 GGCAGTATCGCGGATGGC 61.044 66.667 6.13 8.89 38.69 4.40
128 129 2.440247 AGCGGTTATGCCAAGGCC 60.440 61.111 8.89 0.00 41.09 5.19
175 176 2.672961 TGACGAAATGCCTCAGGTAG 57.327 50.000 0.00 0.00 0.00 3.18
179 180 2.350772 GGTGTTTGACGAAATGCCTCAG 60.351 50.000 0.00 0.00 0.00 3.35
290 291 0.395724 ATTTCCTGGTTCGGGCATCC 60.396 55.000 0.00 0.00 0.00 3.51
450 451 2.355363 TTCCGACGTGAACCTGCG 60.355 61.111 0.00 0.00 0.00 5.18
759 772 8.977505 CATGTGTCATTTTGTTAGTTTTAAGGG 58.022 33.333 0.00 0.00 0.00 3.95
770 783 6.370593 CGTAGCTAACATGTGTCATTTTGTT 58.629 36.000 0.00 0.00 36.37 2.83
814 827 6.543736 GTTAGAAAATGGACCTCTTTTAGCG 58.456 40.000 5.63 0.00 0.00 4.26
822 835 3.055312 ACCCTCGTTAGAAAATGGACCTC 60.055 47.826 0.00 0.00 0.00 3.85
824 837 3.007635 CACCCTCGTTAGAAAATGGACC 58.992 50.000 0.00 0.00 0.00 4.46
826 839 4.360951 AACACCCTCGTTAGAAAATGGA 57.639 40.909 0.00 0.00 0.00 3.41
862 877 3.470709 AGATGGTAAATGATGCAGTCCG 58.529 45.455 0.00 0.00 0.00 4.79
916 935 5.220970 GGAGTGACAGTATGCTCTTACTCTC 60.221 48.000 9.87 4.68 42.53 3.20
929 948 3.031736 GCCCTCTAATGGAGTGACAGTA 58.968 50.000 0.00 0.00 40.30 2.74
944 964 2.204059 ACCTCCTTGCTGCCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
948 968 2.749441 GCTGACCTCCTTGCTGCC 60.749 66.667 0.00 0.00 0.00 4.85
949 969 1.303155 AAGCTGACCTCCTTGCTGC 60.303 57.895 0.00 0.00 35.79 5.25
961 981 0.179032 TGCCAAAGAACCGAAGCTGA 60.179 50.000 0.00 0.00 0.00 4.26
974 994 2.304180 CCTCTCTTCTTCCTCTGCCAAA 59.696 50.000 0.00 0.00 0.00 3.28
1037 1057 1.497991 CGTTTTTCGCAGAGGACTGA 58.502 50.000 0.00 0.00 46.03 3.41
1096 1116 7.017645 CGAAAAGGAGATGACTACAATGTTTG 58.982 38.462 0.00 0.00 0.00 2.93
1109 1129 5.673337 TGTTTTCTGTCGAAAAGGAGATG 57.327 39.130 0.88 0.00 46.54 2.90
1219 1287 2.271777 AGTAATTTGGGACGGAGGGAA 58.728 47.619 0.00 0.00 0.00 3.97
1229 1297 6.373216 TCCATTTCTACGACAAGTAATTTGGG 59.627 38.462 0.00 0.00 41.25 4.12
1232 1300 9.326413 CCTATCCATTTCTACGACAAGTAATTT 57.674 33.333 0.00 0.00 34.45 1.82
1245 1313 8.265055 CCTGTTTTGTACTCCTATCCATTTCTA 58.735 37.037 0.00 0.00 0.00 2.10
1344 1465 7.279313 GGTTTTCTCATCAGCGGTTACTATTTA 59.721 37.037 0.00 0.00 0.00 1.40
1415 1536 0.521242 GTGCTACCAAATTCAGCGCG 60.521 55.000 0.00 0.00 38.15 6.86
1459 1580 4.011517 GAGAACCCCGCCGTGGAA 62.012 66.667 0.00 0.00 42.00 3.53
1538 1659 2.253758 GCTGTGCTTCTTGACCGCA 61.254 57.895 0.00 0.00 0.00 5.69
1662 1783 2.702751 TTCGTGCCGGCTTCTTCGAA 62.703 55.000 29.70 27.20 35.51 3.71
1670 1791 1.003839 TTTCATCTTCGTGCCGGCT 60.004 52.632 29.70 1.01 0.00 5.52
1719 1840 6.480981 CCAGAACGAAGGAAACAAACTACTTA 59.519 38.462 0.00 0.00 0.00 2.24
1751 1882 0.108804 ACAACGACAAGCGGATCGAT 60.109 50.000 12.48 0.00 46.49 3.59
1752 1883 1.006825 CACAACGACAAGCGGATCGA 61.007 55.000 12.48 0.00 46.49 3.59
1753 1884 1.006825 TCACAACGACAAGCGGATCG 61.007 55.000 5.20 5.20 46.49 3.69
1754 1885 0.438830 GTCACAACGACAAGCGGATC 59.561 55.000 0.00 0.00 44.69 3.36
1939 2070 6.483640 GGAAGCCTTGTTAATTATCAGACGAT 59.516 38.462 0.00 0.00 35.50 3.73
1959 2090 0.608640 TCCTGTTTCGGAGAGGAAGC 59.391 55.000 3.65 0.00 44.34 3.86
1972 2103 1.598130 GCGTCTGCCTGTTCCTGTT 60.598 57.895 0.00 0.00 33.98 3.16
1990 2121 1.656441 GTCAAACAGGCAGCACTGG 59.344 57.895 13.53 0.00 42.75 4.00
1991 2122 1.656441 GGTCAAACAGGCAGCACTG 59.344 57.895 8.82 8.82 44.03 3.66
1992 2123 1.893808 CGGTCAAACAGGCAGCACT 60.894 57.895 0.00 0.00 0.00 4.40
1993 2124 1.444119 TTCGGTCAAACAGGCAGCAC 61.444 55.000 0.00 0.00 0.00 4.40
1994 2125 0.537143 ATTCGGTCAAACAGGCAGCA 60.537 50.000 0.00 0.00 0.00 4.41
1995 2126 0.598065 AATTCGGTCAAACAGGCAGC 59.402 50.000 0.00 0.00 0.00 5.25
1996 2127 1.879380 TCAATTCGGTCAAACAGGCAG 59.121 47.619 0.00 0.00 0.00 4.85
1997 2128 1.974265 TCAATTCGGTCAAACAGGCA 58.026 45.000 0.00 0.00 0.00 4.75
1998 2129 2.867429 CATCAATTCGGTCAAACAGGC 58.133 47.619 0.00 0.00 0.00 4.85
1999 2130 2.728846 CGCATCAATTCGGTCAAACAGG 60.729 50.000 0.00 0.00 0.00 4.00
2000 2131 2.508867 CGCATCAATTCGGTCAAACAG 58.491 47.619 0.00 0.00 0.00 3.16
2001 2132 1.198867 CCGCATCAATTCGGTCAAACA 59.801 47.619 0.00 0.00 40.72 2.83
2002 2133 1.895051 CCGCATCAATTCGGTCAAAC 58.105 50.000 0.00 0.00 40.72 2.93
2003 2134 0.170116 GCCGCATCAATTCGGTCAAA 59.830 50.000 3.15 0.00 46.79 2.69
2013 2144 3.990092 AGTCGATTATAAGCCGCATCAA 58.010 40.909 0.00 0.00 0.00 2.57
2050 2185 6.092807 CCTCTTTCGAAGATTCCTAACAAAGG 59.907 42.308 0.00 0.00 41.02 3.11
2060 2195 5.175127 AGCTTCTTCCTCTTTCGAAGATTC 58.825 41.667 0.00 0.00 43.89 2.52
2070 2205 1.977129 ACTGCAGAGCTTCTTCCTCTT 59.023 47.619 23.35 0.00 37.57 2.85
2073 2208 1.337635 CGAACTGCAGAGCTTCTTCCT 60.338 52.381 23.35 0.00 0.00 3.36
2076 2211 2.740981 CAATCGAACTGCAGAGCTTCTT 59.259 45.455 23.35 2.02 0.00 2.52
2108 2243 6.073222 CCGCTGATTAACCAACATTATACTCC 60.073 42.308 0.00 0.00 0.00 3.85
2109 2244 6.704493 TCCGCTGATTAACCAACATTATACTC 59.296 38.462 0.00 0.00 0.00 2.59
2110 2245 6.588204 TCCGCTGATTAACCAACATTATACT 58.412 36.000 0.00 0.00 0.00 2.12
2111 2246 6.854496 TCCGCTGATTAACCAACATTATAC 57.146 37.500 0.00 0.00 0.00 1.47
2112 2247 6.995686 ACATCCGCTGATTAACCAACATTATA 59.004 34.615 0.00 0.00 0.00 0.98
2113 2248 5.827797 ACATCCGCTGATTAACCAACATTAT 59.172 36.000 0.00 0.00 0.00 1.28
2115 2250 4.016444 ACATCCGCTGATTAACCAACATT 58.984 39.130 0.00 0.00 0.00 2.71
2116 2251 3.620488 ACATCCGCTGATTAACCAACAT 58.380 40.909 0.00 0.00 0.00 2.71
2117 2252 3.066291 ACATCCGCTGATTAACCAACA 57.934 42.857 0.00 0.00 0.00 3.33
2118 2253 3.190535 ACAACATCCGCTGATTAACCAAC 59.809 43.478 0.00 0.00 0.00 3.77
2119 2254 3.417101 ACAACATCCGCTGATTAACCAA 58.583 40.909 0.00 0.00 0.00 3.67
2120 2255 3.006940 GACAACATCCGCTGATTAACCA 58.993 45.455 0.00 0.00 0.00 3.67
2121 2256 3.270877 AGACAACATCCGCTGATTAACC 58.729 45.455 0.00 0.00 0.00 2.85
2122 2257 4.946784 AAGACAACATCCGCTGATTAAC 57.053 40.909 0.00 0.00 0.00 2.01
2123 2258 4.155826 CCAAAGACAACATCCGCTGATTAA 59.844 41.667 0.00 0.00 0.00 1.40
2124 2259 3.689161 CCAAAGACAACATCCGCTGATTA 59.311 43.478 0.00 0.00 0.00 1.75
2125 2260 2.489329 CCAAAGACAACATCCGCTGATT 59.511 45.455 0.00 0.00 0.00 2.57
2126 2261 2.086869 CCAAAGACAACATCCGCTGAT 58.913 47.619 0.00 0.00 0.00 2.90
2127 2262 1.071542 TCCAAAGACAACATCCGCTGA 59.928 47.619 0.00 0.00 0.00 4.26
2128 2263 1.466167 CTCCAAAGACAACATCCGCTG 59.534 52.381 0.00 0.00 0.00 5.18
2129 2264 1.611673 CCTCCAAAGACAACATCCGCT 60.612 52.381 0.00 0.00 0.00 5.52
2130 2265 0.804989 CCTCCAAAGACAACATCCGC 59.195 55.000 0.00 0.00 0.00 5.54
2131 2266 0.804989 GCCTCCAAAGACAACATCCG 59.195 55.000 0.00 0.00 0.00 4.18
2132 2267 1.177401 GGCCTCCAAAGACAACATCC 58.823 55.000 0.00 0.00 0.00 3.51
2133 2268 0.804989 CGGCCTCCAAAGACAACATC 59.195 55.000 0.00 0.00 0.00 3.06
2134 2269 0.400213 TCGGCCTCCAAAGACAACAT 59.600 50.000 0.00 0.00 0.00 2.71
2135 2270 0.250295 CTCGGCCTCCAAAGACAACA 60.250 55.000 0.00 0.00 0.00 3.33
2136 2271 1.578206 GCTCGGCCTCCAAAGACAAC 61.578 60.000 0.00 0.00 0.00 3.32
2137 2272 1.302511 GCTCGGCCTCCAAAGACAA 60.303 57.895 0.00 0.00 0.00 3.18
2138 2273 2.172483 GAGCTCGGCCTCCAAAGACA 62.172 60.000 0.00 0.00 0.00 3.41
2139 2274 1.448717 GAGCTCGGCCTCCAAAGAC 60.449 63.158 0.00 0.00 0.00 3.01
2140 2275 2.982130 GAGCTCGGCCTCCAAAGA 59.018 61.111 0.00 0.00 0.00 2.52
2146 2281 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
2147 2282 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
2155 2290 1.089920 CAAAACCGAGCTCCATGGAG 58.910 55.000 33.73 33.73 44.56 3.86
2156 2291 0.690192 TCAAAACCGAGCTCCATGGA 59.310 50.000 15.27 15.27 0.00 3.41
2157 2292 1.533625 TTCAAAACCGAGCTCCATGG 58.466 50.000 4.97 4.97 0.00 3.66
2158 2293 3.641437 TTTTCAAAACCGAGCTCCATG 57.359 42.857 8.47 0.00 0.00 3.66
2159 2294 4.871933 AATTTTCAAAACCGAGCTCCAT 57.128 36.364 8.47 0.00 0.00 3.41
2160 2295 4.664150 AAATTTTCAAAACCGAGCTCCA 57.336 36.364 8.47 0.00 0.00 3.86
2161 2296 5.047188 TCAAAATTTTCAAAACCGAGCTCC 58.953 37.500 8.47 0.00 0.00 4.70
2162 2297 6.582437 TTCAAAATTTTCAAAACCGAGCTC 57.418 33.333 2.73 2.73 0.00 4.09
2163 2298 7.552458 AATTCAAAATTTTCAAAACCGAGCT 57.448 28.000 0.00 0.00 0.00 4.09
2164 2299 8.522661 CAAAATTCAAAATTTTCAAAACCGAGC 58.477 29.630 0.00 0.00 0.00 5.03
2165 2300 9.553418 ACAAAATTCAAAATTTTCAAAACCGAG 57.447 25.926 0.00 0.00 0.00 4.63
2166 2301 9.548208 GACAAAATTCAAAATTTTCAAAACCGA 57.452 25.926 0.00 0.00 0.00 4.69
2167 2302 8.511505 CGACAAAATTCAAAATTTTCAAAACCG 58.488 29.630 0.00 0.00 0.00 4.44
2168 2303 9.548208 TCGACAAAATTCAAAATTTTCAAAACC 57.452 25.926 0.00 0.00 0.00 3.27
2231 2366 9.791801 TGTTATGCCTTCATGTATATGTATGTT 57.208 29.630 0.00 0.00 35.73 2.71
2232 2367 9.219603 GTGTTATGCCTTCATGTATATGTATGT 57.780 33.333 0.00 0.00 35.73 2.29
2233 2368 9.218440 TGTGTTATGCCTTCATGTATATGTATG 57.782 33.333 0.00 0.00 35.73 2.39
2234 2369 9.219603 GTGTGTTATGCCTTCATGTATATGTAT 57.780 33.333 0.00 0.00 35.73 2.29
2235 2370 8.207545 TGTGTGTTATGCCTTCATGTATATGTA 58.792 33.333 0.00 0.00 35.73 2.29
2236 2371 7.053498 TGTGTGTTATGCCTTCATGTATATGT 58.947 34.615 0.00 0.00 35.73 2.29
2237 2372 7.495135 TGTGTGTTATGCCTTCATGTATATG 57.505 36.000 0.00 0.00 34.22 1.78
2238 2373 7.720957 ACATGTGTGTTATGCCTTCATGTATAT 59.279 33.333 0.00 0.00 41.23 0.86
2239 2374 7.012232 CACATGTGTGTTATGCCTTCATGTATA 59.988 37.037 18.03 0.00 41.14 1.47
2240 2375 5.887598 ACATGTGTGTTATGCCTTCATGTAT 59.112 36.000 0.00 0.00 41.23 2.29
2241 2376 5.123661 CACATGTGTGTTATGCCTTCATGTA 59.876 40.000 18.03 0.00 41.14 2.29
2242 2377 4.081406 ACATGTGTGTTATGCCTTCATGT 58.919 39.130 0.00 0.00 39.25 3.21
2243 2378 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
2244 2379 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
2259 2394 6.412362 TGCCCTAAAAATTTACACACATGT 57.588 33.333 0.00 0.00 43.30 3.21
2260 2395 7.721286 TTTGCCCTAAAAATTTACACACATG 57.279 32.000 0.00 0.00 0.00 3.21
2261 2396 8.916628 ATTTTGCCCTAAAAATTTACACACAT 57.083 26.923 0.00 0.00 41.29 3.21
2262 2397 9.832445 TTATTTTGCCCTAAAAATTTACACACA 57.168 25.926 0.00 0.00 41.29 3.72
2272 2407 9.892130 TCTTTTCAACTTATTTTGCCCTAAAAA 57.108 25.926 0.00 0.00 41.29 1.94
2273 2408 9.541143 CTCTTTTCAACTTATTTTGCCCTAAAA 57.459 29.630 0.00 0.00 42.10 1.52
2274 2409 8.147704 CCTCTTTTCAACTTATTTTGCCCTAAA 58.852 33.333 0.00 0.00 0.00 1.85
2275 2410 7.256154 CCCTCTTTTCAACTTATTTTGCCCTAA 60.256 37.037 0.00 0.00 0.00 2.69
2276 2411 6.210584 CCCTCTTTTCAACTTATTTTGCCCTA 59.789 38.462 0.00 0.00 0.00 3.53
2277 2412 5.012046 CCCTCTTTTCAACTTATTTTGCCCT 59.988 40.000 0.00 0.00 0.00 5.19
2278 2413 5.011635 TCCCTCTTTTCAACTTATTTTGCCC 59.988 40.000 0.00 0.00 0.00 5.36
2279 2414 6.096673 TCCCTCTTTTCAACTTATTTTGCC 57.903 37.500 0.00 0.00 0.00 4.52
2280 2415 7.116805 CACATCCCTCTTTTCAACTTATTTTGC 59.883 37.037 0.00 0.00 0.00 3.68
2281 2416 7.116805 GCACATCCCTCTTTTCAACTTATTTTG 59.883 37.037 0.00 0.00 0.00 2.44
2282 2417 7.154656 GCACATCCCTCTTTTCAACTTATTTT 58.845 34.615 0.00 0.00 0.00 1.82
2283 2418 6.267471 TGCACATCCCTCTTTTCAACTTATTT 59.733 34.615 0.00 0.00 0.00 1.40
2284 2419 5.774690 TGCACATCCCTCTTTTCAACTTATT 59.225 36.000 0.00 0.00 0.00 1.40
2285 2420 5.324409 TGCACATCCCTCTTTTCAACTTAT 58.676 37.500 0.00 0.00 0.00 1.73
2286 2421 4.724399 TGCACATCCCTCTTTTCAACTTA 58.276 39.130 0.00 0.00 0.00 2.24
2287 2422 3.565307 TGCACATCCCTCTTTTCAACTT 58.435 40.909 0.00 0.00 0.00 2.66
2288 2423 3.228188 TGCACATCCCTCTTTTCAACT 57.772 42.857 0.00 0.00 0.00 3.16
2289 2424 4.320608 TTTGCACATCCCTCTTTTCAAC 57.679 40.909 0.00 0.00 0.00 3.18
2290 2425 5.350504 TTTTTGCACATCCCTCTTTTCAA 57.649 34.783 0.00 0.00 0.00 2.69
2328 2463 9.253832 AGGATGAATGGTATCATGTGTTAAAAA 57.746 29.630 0.00 0.00 40.08 1.94
2329 2464 8.821686 AGGATGAATGGTATCATGTGTTAAAA 57.178 30.769 0.00 0.00 40.08 1.52
2330 2465 8.821686 AAGGATGAATGGTATCATGTGTTAAA 57.178 30.769 0.00 0.00 40.08 1.52
2331 2466 7.502226 GGAAGGATGAATGGTATCATGTGTTAA 59.498 37.037 0.00 0.00 40.08 2.01
2332 2467 6.998074 GGAAGGATGAATGGTATCATGTGTTA 59.002 38.462 0.00 0.00 40.08 2.41
2333 2468 5.829924 GGAAGGATGAATGGTATCATGTGTT 59.170 40.000 0.00 0.00 40.08 3.32
2334 2469 5.103982 TGGAAGGATGAATGGTATCATGTGT 60.104 40.000 0.00 0.00 40.08 3.72
2335 2470 5.379187 TGGAAGGATGAATGGTATCATGTG 58.621 41.667 0.00 0.00 40.08 3.21
2336 2471 5.651612 TGGAAGGATGAATGGTATCATGT 57.348 39.130 0.00 0.00 40.08 3.21
2337 2472 5.105877 GCATGGAAGGATGAATGGTATCATG 60.106 44.000 0.00 0.00 40.08 3.07
2338 2473 5.014858 GCATGGAAGGATGAATGGTATCAT 58.985 41.667 0.00 0.00 42.62 2.45
2339 2474 4.401022 GCATGGAAGGATGAATGGTATCA 58.599 43.478 0.00 0.00 0.00 2.15
2340 2475 3.760684 GGCATGGAAGGATGAATGGTATC 59.239 47.826 0.00 0.00 0.00 2.24
2341 2476 3.140707 TGGCATGGAAGGATGAATGGTAT 59.859 43.478 0.00 0.00 0.00 2.73
2342 2477 2.513317 TGGCATGGAAGGATGAATGGTA 59.487 45.455 0.00 0.00 0.00 3.25
2343 2478 1.288633 TGGCATGGAAGGATGAATGGT 59.711 47.619 0.00 0.00 0.00 3.55
2344 2479 2.076207 TGGCATGGAAGGATGAATGG 57.924 50.000 0.00 0.00 0.00 3.16
2345 2480 3.227614 TCATGGCATGGAAGGATGAATG 58.772 45.455 26.15 0.00 0.00 2.67
2346 2481 3.605726 TCATGGCATGGAAGGATGAAT 57.394 42.857 26.15 0.00 0.00 2.57
2347 2482 3.385314 TTCATGGCATGGAAGGATGAA 57.615 42.857 26.15 9.55 32.06 2.57
2348 2483 3.605726 ATTCATGGCATGGAAGGATGA 57.394 42.857 26.15 3.21 0.00 2.92
2349 2484 4.141801 ACAAATTCATGGCATGGAAGGATG 60.142 41.667 26.15 18.54 0.00 3.51
2350 2485 4.035112 ACAAATTCATGGCATGGAAGGAT 58.965 39.130 26.15 10.59 0.00 3.24
2351 2486 3.443052 ACAAATTCATGGCATGGAAGGA 58.557 40.909 26.15 4.62 0.00 3.36
2352 2487 3.899052 ACAAATTCATGGCATGGAAGG 57.101 42.857 26.15 14.10 0.00 3.46
2353 2488 6.563222 AAAAACAAATTCATGGCATGGAAG 57.437 33.333 26.15 14.74 0.00 3.46
2373 2508 7.961827 ACGTTAAAATGTGACTTGTACGAAAAA 59.038 29.630 0.00 0.00 0.00 1.94
2374 2509 7.462731 ACGTTAAAATGTGACTTGTACGAAAA 58.537 30.769 0.00 0.00 0.00 2.29
2375 2510 7.002816 ACGTTAAAATGTGACTTGTACGAAA 57.997 32.000 0.00 0.00 0.00 3.46
2376 2511 6.586868 ACGTTAAAATGTGACTTGTACGAA 57.413 33.333 0.00 0.00 0.00 3.85
2377 2512 6.586868 AACGTTAAAATGTGACTTGTACGA 57.413 33.333 0.00 0.00 0.00 3.43
2378 2513 7.653523 AAAACGTTAAAATGTGACTTGTACG 57.346 32.000 0.00 0.00 0.00 3.67
2433 2568 8.940768 AAAATTGTGCAAGTAAACAAGTATGT 57.059 26.923 0.00 0.00 43.14 2.29
2517 2652 3.554342 CTCCCGGGAGCCATGGAG 61.554 72.222 36.90 12.91 36.38 3.86
2539 2674 1.226888 GATTAACGAGAGCGGGCGT 60.227 57.895 0.00 0.00 43.17 5.68
2540 2675 1.209275 CTGATTAACGAGAGCGGGCG 61.209 60.000 0.00 0.00 43.17 6.13
2541 2676 0.179108 ACTGATTAACGAGAGCGGGC 60.179 55.000 0.00 0.00 43.17 6.13
2542 2677 2.295253 AACTGATTAACGAGAGCGGG 57.705 50.000 0.00 0.00 43.17 6.13
2543 2678 3.512680 AGAAACTGATTAACGAGAGCGG 58.487 45.455 0.00 0.00 43.17 5.52
2544 2679 6.202937 AGATAGAAACTGATTAACGAGAGCG 58.797 40.000 0.00 0.00 44.79 5.03
2545 2680 9.685828 AATAGATAGAAACTGATTAACGAGAGC 57.314 33.333 0.00 0.00 0.00 4.09
2692 6598 4.148696 CGCTAATGAAAGCAACAAAACAGG 59.851 41.667 0.00 0.00 42.91 4.00
2712 6618 3.937814 TCAGAAAACATGACCATACGCT 58.062 40.909 0.00 0.00 0.00 5.07
2719 6625 9.313118 ACAAATTTAAGTTCAGAAAACATGACC 57.687 29.630 0.00 0.00 0.00 4.02
2761 6671 7.277098 CGCTTGCCTAGTTACTTAGTTATTTCA 59.723 37.037 0.00 0.00 0.00 2.69
2765 6675 6.218108 ACGCTTGCCTAGTTACTTAGTTAT 57.782 37.500 0.00 0.00 0.00 1.89
2766 6676 5.649782 ACGCTTGCCTAGTTACTTAGTTA 57.350 39.130 0.00 0.00 0.00 2.24
2767 6677 4.532314 ACGCTTGCCTAGTTACTTAGTT 57.468 40.909 0.00 0.00 0.00 2.24
2768 6678 4.021719 TGAACGCTTGCCTAGTTACTTAGT 60.022 41.667 0.00 0.00 0.00 2.24
2769 6679 4.326548 GTGAACGCTTGCCTAGTTACTTAG 59.673 45.833 0.00 0.00 0.00 2.18
2770 6680 4.021719 AGTGAACGCTTGCCTAGTTACTTA 60.022 41.667 0.00 0.00 0.00 2.24
2771 6681 3.064931 GTGAACGCTTGCCTAGTTACTT 58.935 45.455 0.00 0.00 0.00 2.24
2772 6682 2.299297 AGTGAACGCTTGCCTAGTTACT 59.701 45.455 0.00 0.00 0.00 2.24
2773 6683 2.685100 AGTGAACGCTTGCCTAGTTAC 58.315 47.619 0.00 0.00 0.00 2.50
2780 6690 1.204312 GTCGAAGTGAACGCTTGCC 59.796 57.895 5.34 0.00 0.00 4.52
2808 6718 7.181845 ACATTCTTTCTACTCCAATTCTCCTCT 59.818 37.037 0.00 0.00 0.00 3.69
2855 6765 9.226606 CCAGTGTTTCTCTGTGGTTATATTTTA 57.773 33.333 0.00 0.00 0.00 1.52
2856 6766 7.724061 ACCAGTGTTTCTCTGTGGTTATATTTT 59.276 33.333 0.00 0.00 38.39 1.82
2857 6767 7.174946 CACCAGTGTTTCTCTGTGGTTATATTT 59.825 37.037 0.00 0.00 39.57 1.40
2858 6768 6.655003 CACCAGTGTTTCTCTGTGGTTATATT 59.345 38.462 0.00 0.00 39.57 1.28
2859 6769 6.173339 CACCAGTGTTTCTCTGTGGTTATAT 58.827 40.000 0.00 0.00 39.57 0.86
2860 6770 5.547465 CACCAGTGTTTCTCTGTGGTTATA 58.453 41.667 0.00 0.00 39.57 0.98
2861 6771 4.389374 CACCAGTGTTTCTCTGTGGTTAT 58.611 43.478 0.00 0.00 39.57 1.89
2862 6772 3.804036 CACCAGTGTTTCTCTGTGGTTA 58.196 45.455 0.00 0.00 39.57 2.85
2863 6773 2.643551 CACCAGTGTTTCTCTGTGGTT 58.356 47.619 0.00 0.00 39.57 3.67
2864 6774 1.747206 GCACCAGTGTTTCTCTGTGGT 60.747 52.381 0.00 0.00 42.40 4.16
2865 6775 0.947244 GCACCAGTGTTTCTCTGTGG 59.053 55.000 0.00 0.00 0.00 4.17
2866 6776 0.947244 GGCACCAGTGTTTCTCTGTG 59.053 55.000 0.00 0.00 0.00 3.66
2867 6777 0.839946 AGGCACCAGTGTTTCTCTGT 59.160 50.000 0.00 0.00 0.00 3.41
2868 6778 1.972872 AAGGCACCAGTGTTTCTCTG 58.027 50.000 0.00 0.00 0.00 3.35
2869 6779 3.857157 TTAAGGCACCAGTGTTTCTCT 57.143 42.857 0.00 0.00 0.00 3.10
2870 6780 4.518970 TGAATTAAGGCACCAGTGTTTCTC 59.481 41.667 0.00 0.00 0.00 2.87
2871 6781 4.469657 TGAATTAAGGCACCAGTGTTTCT 58.530 39.130 0.00 0.00 0.00 2.52
2872 6782 4.846779 TGAATTAAGGCACCAGTGTTTC 57.153 40.909 0.00 0.00 0.00 2.78
2873 6783 5.304101 TCAATGAATTAAGGCACCAGTGTTT 59.696 36.000 0.00 0.00 0.00 2.83
2874 6784 4.832266 TCAATGAATTAAGGCACCAGTGTT 59.168 37.500 0.00 0.00 0.00 3.32
2875 6785 4.406456 TCAATGAATTAAGGCACCAGTGT 58.594 39.130 0.00 0.00 0.00 3.55
2876 6786 4.676196 GCTCAATGAATTAAGGCACCAGTG 60.676 45.833 0.00 0.00 0.00 3.66
2877 6787 3.445096 GCTCAATGAATTAAGGCACCAGT 59.555 43.478 0.00 0.00 0.00 4.00
2878 6788 3.698040 AGCTCAATGAATTAAGGCACCAG 59.302 43.478 0.00 0.00 0.00 4.00
2879 6789 3.696051 GAGCTCAATGAATTAAGGCACCA 59.304 43.478 9.40 0.00 0.00 4.17
2880 6790 3.950395 AGAGCTCAATGAATTAAGGCACC 59.050 43.478 17.77 0.00 0.00 5.01
2881 6791 5.573337 AAGAGCTCAATGAATTAAGGCAC 57.427 39.130 17.77 0.00 0.00 5.01
2882 6792 6.594788 AAAAGAGCTCAATGAATTAAGGCA 57.405 33.333 17.77 0.00 0.00 4.75
2883 6793 7.650903 CCATAAAAGAGCTCAATGAATTAAGGC 59.349 37.037 17.77 0.00 0.00 4.35
2884 6794 8.689972 ACCATAAAAGAGCTCAATGAATTAAGG 58.310 33.333 17.77 12.84 0.00 2.69
2890 6800 8.469200 CCAATAACCATAAAAGAGCTCAATGAA 58.531 33.333 17.77 0.00 0.00 2.57
2891 6801 7.416664 GCCAATAACCATAAAAGAGCTCAATGA 60.417 37.037 17.77 0.00 0.00 2.57
2892 6802 6.698766 GCCAATAACCATAAAAGAGCTCAATG 59.301 38.462 17.77 12.95 0.00 2.82
2893 6803 6.460123 CGCCAATAACCATAAAAGAGCTCAAT 60.460 38.462 17.77 0.59 0.00 2.57
2894 6804 5.163663 CGCCAATAACCATAAAAGAGCTCAA 60.164 40.000 17.77 0.00 0.00 3.02
2895 6805 4.335315 CGCCAATAACCATAAAAGAGCTCA 59.665 41.667 17.77 0.00 0.00 4.26
2896 6806 4.335594 ACGCCAATAACCATAAAAGAGCTC 59.664 41.667 5.27 5.27 0.00 4.09
2897 6807 4.270008 ACGCCAATAACCATAAAAGAGCT 58.730 39.130 0.00 0.00 0.00 4.09
2898 6808 4.632538 ACGCCAATAACCATAAAAGAGC 57.367 40.909 0.00 0.00 0.00 4.09
2899 6809 6.920569 ACTACGCCAATAACCATAAAAGAG 57.079 37.500 0.00 0.00 0.00 2.85
2900 6810 7.493320 CAGTACTACGCCAATAACCATAAAAGA 59.507 37.037 0.00 0.00 0.00 2.52
2901 6811 7.254658 CCAGTACTACGCCAATAACCATAAAAG 60.255 40.741 0.00 0.00 0.00 2.27
2902 6812 6.539464 CCAGTACTACGCCAATAACCATAAAA 59.461 38.462 0.00 0.00 0.00 1.52
2903 6813 6.050432 CCAGTACTACGCCAATAACCATAAA 58.950 40.000 0.00 0.00 0.00 1.40
2904 6814 5.453621 CCCAGTACTACGCCAATAACCATAA 60.454 44.000 0.00 0.00 0.00 1.90
2905 6815 4.039488 CCCAGTACTACGCCAATAACCATA 59.961 45.833 0.00 0.00 0.00 2.74
2906 6816 3.181458 CCCAGTACTACGCCAATAACCAT 60.181 47.826 0.00 0.00 0.00 3.55
2907 6817 2.168936 CCCAGTACTACGCCAATAACCA 59.831 50.000 0.00 0.00 0.00 3.67
2908 6818 2.431782 TCCCAGTACTACGCCAATAACC 59.568 50.000 0.00 0.00 0.00 2.85
2909 6819 3.131755 ACTCCCAGTACTACGCCAATAAC 59.868 47.826 0.00 0.00 0.00 1.89
2910 6820 3.368248 ACTCCCAGTACTACGCCAATAA 58.632 45.455 0.00 0.00 0.00 1.40
2911 6821 3.022557 ACTCCCAGTACTACGCCAATA 57.977 47.619 0.00 0.00 0.00 1.90
2912 6822 1.861982 ACTCCCAGTACTACGCCAAT 58.138 50.000 0.00 0.00 0.00 3.16
2913 6823 2.094675 GTACTCCCAGTACTACGCCAA 58.905 52.381 0.00 0.00 45.70 4.52
2914 6824 1.755179 GTACTCCCAGTACTACGCCA 58.245 55.000 0.00 0.00 45.70 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.