Multiple sequence alignment - TraesCS3B01G153000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G153000 chr3B 100.000 2713 0 0 429 3141 145319406 145316694 0.000000e+00 5011.0
1 TraesCS3B01G153000 chr3B 100.000 169 0 0 1 169 145319834 145319666 2.350000e-81 313.0
2 TraesCS3B01G153000 chr3B 98.305 177 3 0 2083 2259 155655903 155656079 8.460000e-81 311.0
3 TraesCS3B01G153000 chr3B 85.870 92 8 1 654 745 637134042 637133956 3.340000e-15 93.5
4 TraesCS3B01G153000 chr3B 85.965 57 8 0 87 143 792853471 792853415 9.410000e-06 62.1
5 TraesCS3B01G153000 chr3A 87.856 1334 109 22 765 2083 547979053 547977758 0.000000e+00 1517.0
6 TraesCS3B01G153000 chr3A 95.341 601 24 2 2541 3141 547939695 547939099 0.000000e+00 952.0
7 TraesCS3B01G153000 chr3A 87.928 497 30 8 1101 1597 547982281 547981815 2.740000e-155 558.0
8 TraesCS3B01G153000 chr3A 85.671 328 31 10 765 1086 547982682 547982365 6.490000e-87 331.0
9 TraesCS3B01G153000 chr3A 91.667 132 7 4 2311 2438 547942810 547942679 2.490000e-41 180.0
10 TraesCS3B01G153000 chr3A 85.185 162 11 7 1737 1888 547940006 547939848 1.510000e-33 154.0
11 TraesCS3B01G153000 chr3D 89.101 1202 89 13 895 2083 94515317 94514145 0.000000e+00 1456.0
12 TraesCS3B01G153000 chr3D 91.895 876 59 10 2271 3141 94514147 94513279 0.000000e+00 1214.0
13 TraesCS3B01G153000 chr3D 80.097 829 125 22 1257 2080 94745335 94746128 5.840000e-162 580.0
14 TraesCS3B01G153000 chr3D 94.531 128 4 2 779 906 94515731 94515607 8.890000e-46 195.0
15 TraesCS3B01G153000 chr3D 89.873 79 3 1 662 740 563612430 563612357 2.580000e-16 97.1
16 TraesCS3B01G153000 chr2A 100.000 181 0 0 2084 2264 9676683 9676863 5.020000e-88 335.0
17 TraesCS3B01G153000 chr2A 100.000 116 0 0 2084 2199 9674946 9675061 6.820000e-52 215.0
18 TraesCS3B01G153000 chr2A 97.368 76 2 0 2189 2264 12361070 12360995 2.540000e-26 130.0
19 TraesCS3B01G153000 chr2A 89.062 64 5 2 661 722 683135588 683135525 9.340000e-11 78.7
20 TraesCS3B01G153000 chr5B 99.408 169 1 0 2096 2264 423795613 423795781 1.090000e-79 307.0
21 TraesCS3B01G153000 chr5B 93.651 189 4 1 2084 2264 400924763 400924575 3.090000e-70 276.0
22 TraesCS3B01G153000 chr4A 97.253 182 4 1 2084 2264 620259496 620259677 1.090000e-79 307.0
23 TraesCS3B01G153000 chr4A 96.154 182 6 1 2084 2264 735162173 735162354 2.370000e-76 296.0
24 TraesCS3B01G153000 chr4A 93.258 178 9 2 2084 2260 39081769 39081944 3.110000e-65 259.0
25 TraesCS3B01G153000 chr4A 88.750 80 4 2 665 739 577441447 577441526 3.340000e-15 93.5
26 TraesCS3B01G153000 chr4A 100.000 28 0 0 116 143 160247411 160247384 6.000000e-03 52.8
27 TraesCS3B01G153000 chr6A 94.118 187 4 2 2084 2264 539530363 539530548 8.580000e-71 278.0
28 TraesCS3B01G153000 chr5A 94.059 101 6 0 574 674 687144502 687144402 1.510000e-33 154.0
29 TraesCS3B01G153000 chr5A 100.000 28 0 0 116 143 547660582 547660555 6.000000e-03 52.8
30 TraesCS3B01G153000 chr7A 92.381 105 7 1 2083 2187 404163916 404164019 7.020000e-32 148.0
31 TraesCS3B01G153000 chr7A 90.566 106 10 0 575 680 239239133 239239028 1.170000e-29 141.0
32 TraesCS3B01G153000 chr7A 100.000 28 0 0 116 143 674501213 674501240 6.000000e-03 52.8
33 TraesCS3B01G153000 chr2D 91.509 106 8 1 575 680 39308071 39307967 9.080000e-31 145.0
34 TraesCS3B01G153000 chr2D 95.402 87 4 0 654 740 593363689 593363775 4.220000e-29 139.0
35 TraesCS3B01G153000 chr2D 88.034 117 13 1 574 689 125459218 125459102 1.520000e-28 137.0
36 TraesCS3B01G153000 chr2D 90.566 106 7 3 574 677 197208363 197208467 1.520000e-28 137.0
37 TraesCS3B01G153000 chr2D 90.909 88 8 0 653 740 394517614 394517701 5.500000e-23 119.0
38 TraesCS3B01G153000 chr2D 84.211 95 6 4 654 740 383338827 383338734 2.010000e-12 84.2
39 TraesCS3B01G153000 chr5D 91.429 105 8 1 576 680 408309726 408309829 3.270000e-30 143.0
40 TraesCS3B01G153000 chr1D 91.262 103 8 1 578 680 41749422 41749321 4.220000e-29 139.0
41 TraesCS3B01G153000 chr1D 89.720 107 9 2 575 680 249558690 249558795 5.460000e-28 135.0
42 TraesCS3B01G153000 chr6B 88.393 112 11 2 574 684 662312566 662312456 1.970000e-27 134.0
43 TraesCS3B01G153000 chr7B 93.671 79 5 0 661 739 685994574 685994652 5.500000e-23 119.0
44 TraesCS3B01G153000 chr7B 90.698 43 4 0 101 143 453452325 453452367 1.220000e-04 58.4
45 TraesCS3B01G153000 chr1A 91.667 60 1 4 666 722 13832577 13832519 2.600000e-11 80.5
46 TraesCS3B01G153000 chr7D 100.000 28 0 0 116 143 53259315 53259288 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G153000 chr3B 145316694 145319834 3140 True 2662.000000 5011 100.000000 1 3141 2 chr3B.!!$R3 3140
1 TraesCS3B01G153000 chr3A 547977758 547982682 4924 True 802.000000 1517 87.151667 765 2083 3 chr3A.!!$R2 1318
2 TraesCS3B01G153000 chr3A 547939099 547942810 3711 True 428.666667 952 90.731000 1737 3141 3 chr3A.!!$R1 1404
3 TraesCS3B01G153000 chr3D 94513279 94515731 2452 True 955.000000 1456 91.842333 779 3141 3 chr3D.!!$R2 2362
4 TraesCS3B01G153000 chr3D 94745335 94746128 793 False 580.000000 580 80.097000 1257 2080 1 chr3D.!!$F1 823
5 TraesCS3B01G153000 chr2A 9674946 9676863 1917 False 275.000000 335 100.000000 2084 2264 2 chr2A.!!$F1 180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 753 0.030369 GGTATAGCGACACCCGTGAG 59.97 60.0 0.96 0.0 41.15 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2267 10063 0.108992 GTTCCACGCTCCATGTCGTA 60.109 55.0 4.9 0.0 37.14 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.907927 TCGTTGGCGACTTTTGTTG 57.092 47.368 2.89 0.00 42.81 3.33
21 22 1.088306 TCGTTGGCGACTTTTGTTGT 58.912 45.000 2.89 0.00 42.81 3.32
22 23 1.469308 TCGTTGGCGACTTTTGTTGTT 59.531 42.857 2.89 0.00 42.81 2.83
23 24 1.843753 CGTTGGCGACTTTTGTTGTTC 59.156 47.619 2.89 0.00 41.33 3.18
25 26 0.378962 TGGCGACTTTTGTTGTTCCG 59.621 50.000 0.00 0.00 36.22 4.30
29 30 1.835121 GACTTTTGTTGTTCCGGTGC 58.165 50.000 0.00 0.00 0.00 5.01
30 31 1.133407 GACTTTTGTTGTTCCGGTGCA 59.867 47.619 0.00 0.00 0.00 4.57
32 33 2.192624 CTTTTGTTGTTCCGGTGCAAG 58.807 47.619 12.32 0.00 0.00 4.01
34 35 1.178276 TTGTTGTTCCGGTGCAAGTT 58.822 45.000 12.32 0.00 0.00 2.66
35 36 0.736053 TGTTGTTCCGGTGCAAGTTC 59.264 50.000 12.32 4.13 0.00 3.01
37 38 1.404035 GTTGTTCCGGTGCAAGTTCTT 59.596 47.619 12.32 0.00 0.00 2.52
38 39 1.757682 TGTTCCGGTGCAAGTTCTTT 58.242 45.000 0.00 0.00 0.00 2.52
39 40 2.920524 TGTTCCGGTGCAAGTTCTTTA 58.079 42.857 0.00 0.00 0.00 1.85
40 41 3.482436 TGTTCCGGTGCAAGTTCTTTAT 58.518 40.909 0.00 0.00 0.00 1.40
41 42 4.643463 TGTTCCGGTGCAAGTTCTTTATA 58.357 39.130 0.00 0.00 0.00 0.98
42 43 4.693566 TGTTCCGGTGCAAGTTCTTTATAG 59.306 41.667 0.00 0.00 0.00 1.31
48 49 5.190677 GGTGCAAGTTCTTTATAGGGCTTA 58.809 41.667 0.00 0.00 0.00 3.09
49 50 5.297029 GGTGCAAGTTCTTTATAGGGCTTAG 59.703 44.000 0.00 0.00 0.00 2.18
50 51 5.880887 GTGCAAGTTCTTTATAGGGCTTAGT 59.119 40.000 0.00 0.00 0.00 2.24
51 52 6.374613 GTGCAAGTTCTTTATAGGGCTTAGTT 59.625 38.462 0.00 0.00 0.00 2.24
52 53 6.374333 TGCAAGTTCTTTATAGGGCTTAGTTG 59.626 38.462 0.00 0.00 0.00 3.16
53 54 6.183360 GCAAGTTCTTTATAGGGCTTAGTTGG 60.183 42.308 0.00 0.00 0.00 3.77
54 55 6.886178 AGTTCTTTATAGGGCTTAGTTGGA 57.114 37.500 0.00 0.00 0.00 3.53
55 56 7.453141 AGTTCTTTATAGGGCTTAGTTGGAT 57.547 36.000 0.00 0.00 0.00 3.41
56 57 7.283329 AGTTCTTTATAGGGCTTAGTTGGATG 58.717 38.462 0.00 0.00 0.00 3.51
57 58 7.127339 AGTTCTTTATAGGGCTTAGTTGGATGA 59.873 37.037 0.00 0.00 0.00 2.92
58 59 7.446106 TCTTTATAGGGCTTAGTTGGATGAA 57.554 36.000 0.00 0.00 0.00 2.57
59 60 7.509546 TCTTTATAGGGCTTAGTTGGATGAAG 58.490 38.462 0.00 0.00 0.00 3.02
60 61 7.347222 TCTTTATAGGGCTTAGTTGGATGAAGA 59.653 37.037 0.00 0.00 0.00 2.87
63 64 5.198602 AGGGCTTAGTTGGATGAAGATTT 57.801 39.130 0.00 0.00 0.00 2.17
64 65 4.952335 AGGGCTTAGTTGGATGAAGATTTG 59.048 41.667 0.00 0.00 0.00 2.32
65 66 4.440663 GGGCTTAGTTGGATGAAGATTTGC 60.441 45.833 0.00 0.00 0.00 3.68
66 67 4.346129 GCTTAGTTGGATGAAGATTTGCG 58.654 43.478 0.00 0.00 0.00 4.85
67 68 4.142600 GCTTAGTTGGATGAAGATTTGCGT 60.143 41.667 0.00 0.00 0.00 5.24
68 69 3.837213 AGTTGGATGAAGATTTGCGTG 57.163 42.857 0.00 0.00 0.00 5.34
69 70 2.489329 AGTTGGATGAAGATTTGCGTGG 59.511 45.455 0.00 0.00 0.00 4.94
72 73 2.487762 TGGATGAAGATTTGCGTGGTTC 59.512 45.455 0.00 0.00 0.00 3.62
74 75 1.974265 TGAAGATTTGCGTGGTTCCA 58.026 45.000 0.00 0.00 0.00 3.53
76 77 2.487762 TGAAGATTTGCGTGGTTCCATC 59.512 45.455 0.00 0.00 0.00 3.51
77 78 2.198827 AGATTTGCGTGGTTCCATCA 57.801 45.000 0.00 0.00 0.00 3.07
78 79 2.726821 AGATTTGCGTGGTTCCATCAT 58.273 42.857 0.00 0.00 0.00 2.45
79 80 2.424601 AGATTTGCGTGGTTCCATCATG 59.575 45.455 0.00 0.00 0.00 3.07
80 81 0.887247 TTTGCGTGGTTCCATCATGG 59.113 50.000 0.00 0.00 39.43 3.66
81 82 0.964860 TTGCGTGGTTCCATCATGGG 60.965 55.000 3.05 0.00 38.32 4.00
83 84 0.679640 GCGTGGTTCCATCATGGGAA 60.680 55.000 3.05 0.00 44.50 3.97
91 92 3.851458 TCCATCATGGGAAGAGTGATG 57.149 47.619 3.05 7.43 45.43 3.07
95 96 3.851458 TCATGGGAAGAGTGATGATGG 57.149 47.619 0.00 0.00 0.00 3.51
97 98 3.390311 TCATGGGAAGAGTGATGATGGAG 59.610 47.826 0.00 0.00 0.00 3.86
98 99 2.121948 TGGGAAGAGTGATGATGGAGG 58.878 52.381 0.00 0.00 0.00 4.30
99 100 2.293118 TGGGAAGAGTGATGATGGAGGA 60.293 50.000 0.00 0.00 0.00 3.71
100 101 2.368221 GGGAAGAGTGATGATGGAGGAG 59.632 54.545 0.00 0.00 0.00 3.69
101 102 2.224257 GGAAGAGTGATGATGGAGGAGC 60.224 54.545 0.00 0.00 0.00 4.70
103 104 1.761784 AGAGTGATGATGGAGGAGCAC 59.238 52.381 0.00 0.00 0.00 4.40
104 105 0.835941 AGTGATGATGGAGGAGCACC 59.164 55.000 0.00 0.00 0.00 5.01
110 111 4.648007 TGGAGGAGCACCTTCAGT 57.352 55.556 7.14 0.00 46.01 3.41
111 112 2.854253 TGGAGGAGCACCTTCAGTT 58.146 52.632 7.14 0.00 46.01 3.16
113 114 1.202806 TGGAGGAGCACCTTCAGTTTG 60.203 52.381 7.14 0.00 46.01 2.93
114 115 3.555606 TGGAGGAGCACCTTCAGTTTGA 61.556 50.000 7.14 0.00 46.01 2.69
116 117 3.064900 AGGAGCACCTTCAGTTTGATC 57.935 47.619 0.00 0.00 45.36 2.92
117 118 2.087646 GGAGCACCTTCAGTTTGATCC 58.912 52.381 0.00 0.00 38.56 3.36
119 120 2.746362 GAGCACCTTCAGTTTGATCCAG 59.254 50.000 0.00 0.00 0.00 3.86
121 122 2.227388 GCACCTTCAGTTTGATCCAGTG 59.773 50.000 0.00 0.00 0.00 3.66
122 123 2.227388 CACCTTCAGTTTGATCCAGTGC 59.773 50.000 0.00 0.00 0.00 4.40
123 124 2.107204 ACCTTCAGTTTGATCCAGTGCT 59.893 45.455 0.00 0.00 0.00 4.40
124 125 3.152341 CCTTCAGTTTGATCCAGTGCTT 58.848 45.455 0.00 0.00 0.00 3.91
127 128 4.350368 TCAGTTTGATCCAGTGCTTGTA 57.650 40.909 0.00 0.00 0.00 2.41
128 129 4.318332 TCAGTTTGATCCAGTGCTTGTAG 58.682 43.478 0.00 0.00 0.00 2.74
130 131 4.153117 CAGTTTGATCCAGTGCTTGTAGTC 59.847 45.833 0.00 0.00 0.00 2.59
131 132 4.065088 GTTTGATCCAGTGCTTGTAGTCA 58.935 43.478 0.00 0.00 0.00 3.41
135 136 1.002366 CCAGTGCTTGTAGTCATCGC 58.998 55.000 0.00 0.00 0.00 4.58
136 137 1.404717 CCAGTGCTTGTAGTCATCGCT 60.405 52.381 0.00 0.00 0.00 4.93
137 138 2.159240 CCAGTGCTTGTAGTCATCGCTA 60.159 50.000 0.00 0.00 0.00 4.26
138 139 3.111838 CAGTGCTTGTAGTCATCGCTAG 58.888 50.000 0.00 0.00 0.00 3.42
139 140 3.017442 AGTGCTTGTAGTCATCGCTAGA 58.983 45.455 0.00 0.00 0.00 2.43
140 141 3.634448 AGTGCTTGTAGTCATCGCTAGAT 59.366 43.478 0.00 0.00 37.65 1.98
151 152 0.964700 TCGCTAGATGGCTGAGATGG 59.035 55.000 0.00 0.00 0.00 3.51
153 154 1.069823 CGCTAGATGGCTGAGATGGTT 59.930 52.381 0.00 0.00 0.00 3.67
156 157 4.502962 GCTAGATGGCTGAGATGGTTATC 58.497 47.826 0.00 0.00 0.00 1.75
157 158 4.222588 GCTAGATGGCTGAGATGGTTATCT 59.777 45.833 0.00 0.00 46.22 1.98
158 159 5.279910 GCTAGATGGCTGAGATGGTTATCTT 60.280 44.000 0.00 0.00 43.63 2.40
159 160 5.643421 AGATGGCTGAGATGGTTATCTTT 57.357 39.130 0.00 0.00 43.63 2.52
160 161 5.374921 AGATGGCTGAGATGGTTATCTTTG 58.625 41.667 0.00 0.00 43.63 2.77
161 162 4.842531 TGGCTGAGATGGTTATCTTTGA 57.157 40.909 0.00 0.00 43.63 2.69
162 163 5.178096 TGGCTGAGATGGTTATCTTTGAA 57.822 39.130 0.00 0.00 43.63 2.69
165 166 6.664816 TGGCTGAGATGGTTATCTTTGAATTT 59.335 34.615 0.00 0.00 43.63 1.82
167 168 7.199078 GCTGAGATGGTTATCTTTGAATTTCC 58.801 38.462 0.00 0.00 43.63 3.13
168 169 7.148018 GCTGAGATGGTTATCTTTGAATTTCCA 60.148 37.037 0.00 0.00 43.63 3.53
447 448 2.601481 CCACATGAACTTCAGCGAAC 57.399 50.000 0.00 0.00 0.00 3.95
448 449 1.872952 CCACATGAACTTCAGCGAACA 59.127 47.619 0.00 0.00 0.00 3.18
449 450 2.485426 CCACATGAACTTCAGCGAACAT 59.515 45.455 0.00 0.00 0.00 2.71
450 451 3.684305 CCACATGAACTTCAGCGAACATA 59.316 43.478 0.00 0.00 0.00 2.29
451 452 4.333649 CCACATGAACTTCAGCGAACATAT 59.666 41.667 0.00 0.00 0.00 1.78
452 453 5.496387 CACATGAACTTCAGCGAACATATC 58.504 41.667 0.00 0.00 0.00 1.63
453 454 5.063817 CACATGAACTTCAGCGAACATATCA 59.936 40.000 0.00 0.00 0.00 2.15
454 455 5.063944 ACATGAACTTCAGCGAACATATCAC 59.936 40.000 0.00 0.00 0.00 3.06
455 456 4.565022 TGAACTTCAGCGAACATATCACA 58.435 39.130 0.00 0.00 0.00 3.58
456 457 4.388773 TGAACTTCAGCGAACATATCACAC 59.611 41.667 0.00 0.00 0.00 3.82
457 458 2.923655 ACTTCAGCGAACATATCACACG 59.076 45.455 0.00 0.00 0.00 4.49
458 459 2.931512 TCAGCGAACATATCACACGA 57.068 45.000 0.00 0.00 0.00 4.35
459 460 3.224884 TCAGCGAACATATCACACGAA 57.775 42.857 0.00 0.00 0.00 3.85
460 461 2.921121 TCAGCGAACATATCACACGAAC 59.079 45.455 0.00 0.00 0.00 3.95
461 462 2.666022 CAGCGAACATATCACACGAACA 59.334 45.455 0.00 0.00 0.00 3.18
462 463 2.666508 AGCGAACATATCACACGAACAC 59.333 45.455 0.00 0.00 0.00 3.32
463 464 2.410392 GCGAACATATCACACGAACACA 59.590 45.455 0.00 0.00 0.00 3.72
464 465 3.120820 GCGAACATATCACACGAACACAA 60.121 43.478 0.00 0.00 0.00 3.33
465 466 4.628081 CGAACATATCACACGAACACAAG 58.372 43.478 0.00 0.00 0.00 3.16
466 467 4.384547 CGAACATATCACACGAACACAAGA 59.615 41.667 0.00 0.00 0.00 3.02
467 468 5.107645 CGAACATATCACACGAACACAAGAA 60.108 40.000 0.00 0.00 0.00 2.52
468 469 5.845985 ACATATCACACGAACACAAGAAG 57.154 39.130 0.00 0.00 0.00 2.85
469 470 5.538118 ACATATCACACGAACACAAGAAGA 58.462 37.500 0.00 0.00 0.00 2.87
470 471 5.989168 ACATATCACACGAACACAAGAAGAA 59.011 36.000 0.00 0.00 0.00 2.52
471 472 4.795970 ATCACACGAACACAAGAAGAAC 57.204 40.909 0.00 0.00 0.00 3.01
472 473 3.591023 TCACACGAACACAAGAAGAACA 58.409 40.909 0.00 0.00 0.00 3.18
473 474 3.369756 TCACACGAACACAAGAAGAACAC 59.630 43.478 0.00 0.00 0.00 3.32
474 475 3.124466 CACACGAACACAAGAAGAACACA 59.876 43.478 0.00 0.00 0.00 3.72
475 476 3.938963 ACACGAACACAAGAAGAACACAT 59.061 39.130 0.00 0.00 0.00 3.21
476 477 4.034048 ACACGAACACAAGAAGAACACATC 59.966 41.667 0.00 0.00 0.00 3.06
477 478 3.245284 ACGAACACAAGAAGAACACATCG 59.755 43.478 0.00 0.00 0.00 3.84
478 479 3.545633 GAACACAAGAAGAACACATCGC 58.454 45.455 0.00 0.00 0.00 4.58
479 480 2.838736 ACACAAGAAGAACACATCGCT 58.161 42.857 0.00 0.00 0.00 4.93
480 481 2.802816 ACACAAGAAGAACACATCGCTC 59.197 45.455 0.00 0.00 0.00 5.03
481 482 2.802247 CACAAGAAGAACACATCGCTCA 59.198 45.455 0.00 0.00 0.00 4.26
482 483 3.434641 CACAAGAAGAACACATCGCTCAT 59.565 43.478 0.00 0.00 0.00 2.90
483 484 3.434641 ACAAGAAGAACACATCGCTCATG 59.565 43.478 0.00 0.00 38.64 3.07
484 485 2.005451 AGAAGAACACATCGCTCATGC 58.995 47.619 0.00 0.00 35.65 4.06
485 486 1.063174 GAAGAACACATCGCTCATGCC 59.937 52.381 0.00 0.00 35.65 4.40
486 487 0.036105 AGAACACATCGCTCATGCCA 60.036 50.000 0.00 0.00 35.65 4.92
487 488 0.097674 GAACACATCGCTCATGCCAC 59.902 55.000 0.00 0.00 35.65 5.01
488 489 0.606130 AACACATCGCTCATGCCACA 60.606 50.000 0.00 0.00 35.65 4.17
489 490 1.300971 ACACATCGCTCATGCCACAC 61.301 55.000 0.00 0.00 35.65 3.82
490 491 1.003476 ACATCGCTCATGCCACACA 60.003 52.632 0.00 0.00 35.65 3.72
491 492 0.606130 ACATCGCTCATGCCACACAA 60.606 50.000 0.00 0.00 35.65 3.33
492 493 0.098200 CATCGCTCATGCCACACAAG 59.902 55.000 0.00 0.00 35.36 3.16
493 494 1.028330 ATCGCTCATGCCACACAAGG 61.028 55.000 0.00 0.00 35.36 3.61
494 495 1.968017 CGCTCATGCCACACAAGGT 60.968 57.895 0.00 0.00 35.36 3.50
496 497 1.582968 CTCATGCCACACAAGGTGC 59.417 57.895 0.00 0.00 46.50 5.01
497 498 1.152798 TCATGCCACACAAGGTGCA 60.153 52.632 0.00 0.00 46.50 4.57
498 499 0.754587 TCATGCCACACAAGGTGCAA 60.755 50.000 0.00 0.00 46.50 4.08
499 500 0.598158 CATGCCACACAAGGTGCAAC 60.598 55.000 0.00 0.00 46.50 4.17
500 501 0.756442 ATGCCACACAAGGTGCAACT 60.756 50.000 0.00 0.00 46.50 3.16
501 502 1.360192 GCCACACAAGGTGCAACTC 59.640 57.895 3.77 0.00 46.50 3.01
502 503 1.383456 GCCACACAAGGTGCAACTCA 61.383 55.000 3.77 0.00 46.50 3.41
503 504 1.102154 CCACACAAGGTGCAACTCAA 58.898 50.000 3.77 0.00 46.50 3.02
504 505 1.202290 CCACACAAGGTGCAACTCAAC 60.202 52.381 3.77 0.00 46.50 3.18
505 506 1.102978 ACACAAGGTGCAACTCAACC 58.897 50.000 3.77 0.00 36.98 3.77
506 507 1.102154 CACAAGGTGCAACTCAACCA 58.898 50.000 3.77 0.00 36.74 3.67
507 508 1.066002 CACAAGGTGCAACTCAACCAG 59.934 52.381 3.77 0.00 36.74 4.00
508 509 1.064758 ACAAGGTGCAACTCAACCAGA 60.065 47.619 3.77 0.00 36.74 3.86
516 517 3.559024 CTCAACCAGAGCACGCAG 58.441 61.111 0.00 0.00 37.59 5.18
517 518 2.666190 TCAACCAGAGCACGCAGC 60.666 61.111 0.00 0.00 46.19 5.25
526 527 2.502510 GCACGCAGCCAAACATCG 60.503 61.111 0.00 0.00 37.23 3.84
527 528 2.502510 CACGCAGCCAAACATCGC 60.503 61.111 0.00 0.00 0.00 4.58
529 530 4.088762 CGCAGCCAAACATCGCGT 62.089 61.111 5.77 0.00 40.99 6.01
530 531 2.202349 GCAGCCAAACATCGCGTC 60.202 61.111 5.77 0.00 0.00 5.19
531 532 2.096406 CAGCCAAACATCGCGTCG 59.904 61.111 5.77 0.08 0.00 5.12
532 533 2.357034 AGCCAAACATCGCGTCGT 60.357 55.556 5.77 0.85 0.00 4.34
533 534 2.095843 GCCAAACATCGCGTCGTC 59.904 61.111 5.77 0.00 0.00 4.20
534 535 2.776072 CCAAACATCGCGTCGTCC 59.224 61.111 5.77 0.00 0.00 4.79
535 536 2.736682 CCAAACATCGCGTCGTCCC 61.737 63.158 5.77 0.00 0.00 4.46
536 537 2.024868 CAAACATCGCGTCGTCCCA 61.025 57.895 5.77 0.00 0.00 4.37
537 538 1.301087 AAACATCGCGTCGTCCCAA 60.301 52.632 5.77 0.00 0.00 4.12
538 539 1.562575 AAACATCGCGTCGTCCCAAC 61.563 55.000 5.77 0.00 0.00 3.77
539 540 2.431771 CATCGCGTCGTCCCAACA 60.432 61.111 5.77 0.00 0.00 3.33
540 541 2.024868 CATCGCGTCGTCCCAACAA 61.025 57.895 5.77 0.00 0.00 2.83
541 542 2.025418 ATCGCGTCGTCCCAACAAC 61.025 57.895 5.77 0.00 0.00 3.32
542 543 2.702751 ATCGCGTCGTCCCAACAACA 62.703 55.000 5.77 0.00 0.00 3.33
543 544 2.526993 CGCGTCGTCCCAACAACAA 61.527 57.895 0.00 0.00 0.00 2.83
544 545 1.837538 CGCGTCGTCCCAACAACAAT 61.838 55.000 0.00 0.00 0.00 2.71
545 546 0.309612 GCGTCGTCCCAACAACAATT 59.690 50.000 0.00 0.00 0.00 2.32
546 547 1.924191 GCGTCGTCCCAACAACAATTG 60.924 52.381 3.24 3.24 0.00 2.32
547 548 1.600013 CGTCGTCCCAACAACAATTGA 59.400 47.619 13.59 0.00 0.00 2.57
548 549 2.349438 CGTCGTCCCAACAACAATTGAG 60.349 50.000 13.59 6.78 0.00 3.02
549 550 2.031157 GTCGTCCCAACAACAATTGAGG 60.031 50.000 13.59 6.01 0.00 3.86
550 551 1.269448 CGTCCCAACAACAATTGAGGG 59.731 52.381 13.59 14.00 44.87 4.30
551 552 2.316108 GTCCCAACAACAATTGAGGGT 58.684 47.619 13.59 4.05 44.31 4.34
552 553 2.035832 GTCCCAACAACAATTGAGGGTG 59.964 50.000 13.59 11.85 44.31 4.61
553 554 2.091610 TCCCAACAACAATTGAGGGTGA 60.092 45.455 13.59 3.40 44.31 4.02
554 555 2.297033 CCCAACAACAATTGAGGGTGAG 59.703 50.000 13.59 0.00 41.39 3.51
555 556 2.297033 CCAACAACAATTGAGGGTGAGG 59.703 50.000 13.59 8.80 0.00 3.86
556 557 2.292828 ACAACAATTGAGGGTGAGGG 57.707 50.000 13.59 0.00 0.00 4.30
557 558 1.499007 ACAACAATTGAGGGTGAGGGT 59.501 47.619 13.59 0.00 0.00 4.34
558 559 1.888512 CAACAATTGAGGGTGAGGGTG 59.111 52.381 13.59 0.00 0.00 4.61
559 560 1.444933 ACAATTGAGGGTGAGGGTGA 58.555 50.000 13.59 0.00 0.00 4.02
560 561 1.352352 ACAATTGAGGGTGAGGGTGAG 59.648 52.381 13.59 0.00 0.00 3.51
561 562 0.995024 AATTGAGGGTGAGGGTGAGG 59.005 55.000 0.00 0.00 0.00 3.86
562 563 0.916358 ATTGAGGGTGAGGGTGAGGG 60.916 60.000 0.00 0.00 0.00 4.30
563 564 2.043527 TTGAGGGTGAGGGTGAGGGA 62.044 60.000 0.00 0.00 0.00 4.20
564 565 1.687493 GAGGGTGAGGGTGAGGGAG 60.687 68.421 0.00 0.00 0.00 4.30
565 566 2.689034 GGGTGAGGGTGAGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
566 567 2.689034 GGTGAGGGTGAGGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
567 568 3.403558 GTGAGGGTGAGGGAGGGC 61.404 72.222 0.00 0.00 0.00 5.19
569 570 4.779733 GAGGGTGAGGGAGGGCGA 62.780 72.222 0.00 0.00 0.00 5.54
572 573 4.083862 GGTGAGGGAGGGCGACAC 62.084 72.222 0.00 0.00 0.00 3.67
573 574 4.083862 GTGAGGGAGGGCGACACC 62.084 72.222 0.00 0.00 37.93 4.16
574 575 4.316823 TGAGGGAGGGCGACACCT 62.317 66.667 0.00 0.00 45.57 4.00
575 576 2.043248 GAGGGAGGGCGACACCTA 60.043 66.667 0.00 0.00 42.10 3.08
576 577 2.042843 AGGGAGGGCGACACCTAG 60.043 66.667 3.82 0.00 42.10 3.02
577 578 2.363925 GGGAGGGCGACACCTAGT 60.364 66.667 3.82 0.00 42.10 2.57
578 579 2.424733 GGGAGGGCGACACCTAGTC 61.425 68.421 3.82 0.00 42.10 2.59
579 580 2.424733 GGAGGGCGACACCTAGTCC 61.425 68.421 0.00 0.00 44.66 3.85
580 581 1.380112 GAGGGCGACACCTAGTCCT 60.380 63.158 0.00 0.00 46.54 3.85
581 582 1.668101 GAGGGCGACACCTAGTCCTG 61.668 65.000 0.00 0.00 43.45 3.86
582 583 2.722201 GGGCGACACCTAGTCCTGG 61.722 68.421 0.00 0.00 44.66 4.45
583 584 2.184579 GCGACACCTAGTCCTGGC 59.815 66.667 0.00 0.00 44.66 4.85
584 585 2.893398 CGACACCTAGTCCTGGCC 59.107 66.667 0.00 0.00 44.66 5.36
585 586 1.982395 CGACACCTAGTCCTGGCCA 60.982 63.158 4.71 4.71 44.66 5.36
586 587 1.330655 CGACACCTAGTCCTGGCCAT 61.331 60.000 5.51 0.00 44.66 4.40
587 588 0.179000 GACACCTAGTCCTGGCCATG 59.821 60.000 5.51 2.84 41.56 3.66
588 589 1.274703 ACACCTAGTCCTGGCCATGG 61.275 60.000 5.51 7.63 0.00 3.66
589 590 1.694169 ACCTAGTCCTGGCCATGGG 60.694 63.158 15.13 4.96 0.00 4.00
651 652 3.841870 GCCCGGGCCTAGATTTTG 58.158 61.111 36.64 0.00 34.56 2.44
652 653 1.226262 GCCCGGGCCTAGATTTTGA 59.774 57.895 36.64 0.00 34.56 2.69
653 654 0.819666 GCCCGGGCCTAGATTTTGAG 60.820 60.000 36.64 0.00 34.56 3.02
654 655 0.819666 CCCGGGCCTAGATTTTGAGC 60.820 60.000 8.08 0.00 0.00 4.26
655 656 0.819666 CCGGGCCTAGATTTTGAGCC 60.820 60.000 0.84 0.00 43.09 4.70
657 658 2.707902 GGCCTAGATTTTGAGCCCG 58.292 57.895 0.00 0.00 37.66 6.13
658 659 0.180406 GGCCTAGATTTTGAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
659 660 1.408266 GGCCTAGATTTTGAGCCCGAA 60.408 52.381 0.00 0.00 37.66 4.30
660 661 1.943340 GCCTAGATTTTGAGCCCGAAG 59.057 52.381 0.00 0.00 0.00 3.79
690 691 1.743996 GCTCTGGCCTAGGTTTTCTG 58.256 55.000 11.31 2.87 0.00 3.02
691 692 1.743996 CTCTGGCCTAGGTTTTCTGC 58.256 55.000 11.31 0.00 0.00 4.26
692 693 0.328258 TCTGGCCTAGGTTTTCTGCC 59.672 55.000 11.31 3.69 42.49 4.85
693 694 0.329596 CTGGCCTAGGTTTTCTGCCT 59.670 55.000 11.31 0.00 42.62 4.75
694 695 0.328258 TGGCCTAGGTTTTCTGCCTC 59.672 55.000 11.31 0.00 42.62 4.70
695 696 0.744771 GGCCTAGGTTTTCTGCCTCG 60.745 60.000 11.31 0.00 39.05 4.63
696 697 0.744771 GCCTAGGTTTTCTGCCTCGG 60.745 60.000 11.31 0.00 40.70 4.63
697 698 0.107654 CCTAGGTTTTCTGCCTCGGG 60.108 60.000 0.00 0.00 35.87 5.14
707 708 3.905249 GCCTCGGGCTTTGGTAAG 58.095 61.111 7.58 0.00 46.69 2.34
715 716 2.754254 CTTTGGTAAGCCCGGCCC 60.754 66.667 5.55 0.34 35.15 5.80
716 717 3.577334 CTTTGGTAAGCCCGGCCCA 62.577 63.158 5.55 3.49 35.15 5.36
717 718 3.577334 TTTGGTAAGCCCGGCCCAG 62.577 63.158 5.55 0.00 35.15 4.45
740 741 3.239861 GCAGATGGCCAGGTATAGC 57.760 57.895 13.05 5.58 36.11 2.97
741 742 0.671781 GCAGATGGCCAGGTATAGCG 60.672 60.000 13.05 0.00 36.11 4.26
742 743 0.969149 CAGATGGCCAGGTATAGCGA 59.031 55.000 13.05 0.00 0.00 4.93
743 744 0.969894 AGATGGCCAGGTATAGCGAC 59.030 55.000 13.05 0.00 0.00 5.19
744 745 0.679505 GATGGCCAGGTATAGCGACA 59.320 55.000 13.05 0.00 0.00 4.35
745 746 0.393077 ATGGCCAGGTATAGCGACAC 59.607 55.000 13.05 0.00 0.00 3.67
746 747 1.069258 GGCCAGGTATAGCGACACC 59.931 63.158 0.00 0.00 34.86 4.16
747 748 1.069258 GCCAGGTATAGCGACACCC 59.931 63.158 0.00 0.00 35.25 4.61
748 749 1.362717 CCAGGTATAGCGACACCCG 59.637 63.158 0.00 0.00 42.21 5.28
749 750 1.389609 CCAGGTATAGCGACACCCGT 61.390 60.000 0.00 0.00 41.15 5.28
750 751 0.248907 CAGGTATAGCGACACCCGTG 60.249 60.000 0.00 0.00 41.15 4.94
751 752 0.394762 AGGTATAGCGACACCCGTGA 60.395 55.000 0.96 0.00 41.15 4.35
752 753 0.030369 GGTATAGCGACACCCGTGAG 59.970 60.000 0.96 0.00 41.15 3.51
807 808 1.065600 GCAAAGCAACACGAAGGCA 59.934 52.632 0.00 0.00 0.00 4.75
826 827 2.734492 GCATTCAGAGTGGCTGCAATTC 60.734 50.000 0.50 0.00 44.52 2.17
906 907 7.061094 GGAGCATTTATCACGAAAAAGACTTTG 59.939 37.037 0.06 0.00 0.00 2.77
907 908 6.863126 AGCATTTATCACGAAAAAGACTTTGG 59.137 34.615 0.06 0.00 0.00 3.28
939 1241 4.932146 AGAAAACCAATACGCATTATGCC 58.068 39.130 11.90 0.00 41.12 4.40
942 1244 4.503741 AACCAATACGCATTATGCCATC 57.496 40.909 11.90 0.00 41.12 3.51
955 1257 2.903357 CCATCTGACACGGAGGGG 59.097 66.667 3.70 0.00 37.09 4.79
956 1258 1.685765 CCATCTGACACGGAGGGGA 60.686 63.158 3.70 0.00 37.09 4.81
957 1259 1.680522 CCATCTGACACGGAGGGGAG 61.681 65.000 3.70 0.00 37.09 4.30
958 1260 1.381872 ATCTGACACGGAGGGGAGG 60.382 63.158 0.00 0.00 0.00 4.30
959 1261 2.880629 ATCTGACACGGAGGGGAGGG 62.881 65.000 0.00 0.00 0.00 4.30
1001 1304 6.142818 TGCTAACAGCTTAACAAAACACAT 57.857 33.333 0.00 0.00 42.97 3.21
1002 1305 5.976534 TGCTAACAGCTTAACAAAACACATG 59.023 36.000 0.00 0.00 42.97 3.21
1004 1307 5.337578 AACAGCTTAACAAAACACATGGT 57.662 34.783 0.00 0.00 0.00 3.55
1028 1331 7.262048 GTCACAACCAAAGGTCAAATAAGAAA 58.738 34.615 0.00 0.00 33.12 2.52
1030 1333 7.123547 TCACAACCAAAGGTCAAATAAGAAACT 59.876 33.333 0.00 0.00 33.12 2.66
1032 1335 8.410912 ACAACCAAAGGTCAAATAAGAAACTAC 58.589 33.333 0.00 0.00 33.12 2.73
1071 1378 7.596621 CGTAGCTATATCTTTCTTTCATGAGCA 59.403 37.037 0.00 0.00 0.00 4.26
1081 1388 4.562082 TCTTTCATGAGCATTGCCTTTTG 58.438 39.130 4.70 0.00 0.00 2.44
1091 1398 6.475596 AGCATTGCCTTTTGCTCTATTATT 57.524 33.333 4.70 0.00 45.83 1.40
1092 1399 7.587037 AGCATTGCCTTTTGCTCTATTATTA 57.413 32.000 4.70 0.00 45.83 0.98
1180 1556 1.553690 AAGCTTCTCCCCGCTGCTAA 61.554 55.000 0.00 0.00 36.45 3.09
1191 1567 1.539388 CCGCTGCTAATGTTTGGTCAA 59.461 47.619 0.00 0.00 0.00 3.18
1201 1577 3.019799 TGTTTGGTCAAAAGCACCCTA 57.980 42.857 0.00 0.00 32.24 3.53
1216 1592 1.380785 CCTAGGCCTCACGGTACCA 60.381 63.158 9.68 0.00 0.00 3.25
1221 1597 2.654877 CCTCACGGTACCAACGCT 59.345 61.111 13.54 0.00 34.00 5.07
1222 1598 1.736645 CCTCACGGTACCAACGCTG 60.737 63.158 13.54 0.00 34.00 5.18
1223 1599 1.287815 CTCACGGTACCAACGCTGA 59.712 57.895 13.54 3.18 34.00 4.26
1224 1600 0.319211 CTCACGGTACCAACGCTGAA 60.319 55.000 13.54 0.00 34.00 3.02
1225 1601 0.319211 TCACGGTACCAACGCTGAAG 60.319 55.000 13.54 0.00 34.00 3.02
1226 1602 0.319211 CACGGTACCAACGCTGAAGA 60.319 55.000 13.54 0.00 34.00 2.87
1227 1603 0.606604 ACGGTACCAACGCTGAAGAT 59.393 50.000 13.54 0.00 34.00 2.40
1296 1675 5.627499 TGTTTTTCTACAGCATAAGCAGG 57.373 39.130 0.00 0.00 45.49 4.85
1329 1708 0.798776 GCAAGATTGTGGACGACCTG 59.201 55.000 5.33 0.00 37.04 4.00
1357 1736 1.289109 CTTGTACTGGACAACGCCGG 61.289 60.000 0.16 0.00 43.30 6.13
1358 1737 2.433664 GTACTGGACAACGCCGGG 60.434 66.667 2.18 0.00 38.69 5.73
1501 1886 4.717629 CGTTCTCGCACGAGCCCA 62.718 66.667 15.04 0.00 43.15 5.36
1611 1996 1.064296 CGAGCACGGCTACTACCAG 59.936 63.158 0.00 0.00 39.88 4.00
1618 2854 0.032678 CGGCTACTACCAGGCAGATG 59.967 60.000 0.00 0.00 41.01 2.90
1619 2855 0.250081 GGCTACTACCAGGCAGATGC 60.250 60.000 0.00 0.00 40.68 3.91
1620 2856 0.465705 GCTACTACCAGGCAGATGCA 59.534 55.000 7.19 0.00 44.36 3.96
1624 2860 3.390183 TACCAGGCAGATGCAGGCG 62.390 63.158 13.50 0.00 44.36 5.52
1658 2894 4.129737 CGGCCGTGACGACCTCAT 62.130 66.667 19.50 0.00 35.20 2.90
1659 2895 2.202756 GGCCGTGACGACCTCATC 60.203 66.667 6.54 0.00 0.00 2.92
1661 2897 3.001902 GCCGTGACGACCTCATCCA 62.002 63.158 6.54 0.00 0.00 3.41
1662 2898 1.153823 CCGTGACGACCTCATCCAC 60.154 63.158 6.54 0.00 0.00 4.02
1665 2956 2.348104 TGACGACCTCATCCACGGG 61.348 63.158 0.00 0.00 0.00 5.28
1667 2958 1.381327 ACGACCTCATCCACGGGAT 60.381 57.895 0.00 0.00 44.21 3.85
1700 2991 3.777910 GGCGGGCGGGAAGTTCTA 61.778 66.667 2.25 0.00 0.00 2.10
1701 2992 2.510918 GCGGGCGGGAAGTTCTAC 60.511 66.667 2.25 0.00 0.00 2.59
1707 2998 1.872679 CGGGAAGTTCTACGCGAGC 60.873 63.158 15.93 0.00 43.19 5.03
1709 3000 1.511768 GGAAGTTCTACGCGAGCCT 59.488 57.895 15.93 2.66 0.00 4.58
1712 3003 1.878656 AAGTTCTACGCGAGCCTGCT 61.879 55.000 15.93 0.00 0.00 4.24
1714 3005 3.356639 TTCTACGCGAGCCTGCTGG 62.357 63.158 15.93 5.03 0.00 4.85
1736 3027 2.566529 CACCGTGCTGACGCTAGA 59.433 61.111 0.00 0.00 44.68 2.43
1738 3029 1.972223 ACCGTGCTGACGCTAGAGT 60.972 57.895 0.00 0.00 44.68 3.24
1739 3030 1.213013 CCGTGCTGACGCTAGAGTT 59.787 57.895 0.00 0.00 44.68 3.01
1740 3031 0.798771 CCGTGCTGACGCTAGAGTTC 60.799 60.000 0.00 0.00 44.68 3.01
1741 3032 0.169230 CGTGCTGACGCTAGAGTTCT 59.831 55.000 0.00 0.00 39.10 3.01
1742 3033 1.792273 CGTGCTGACGCTAGAGTTCTC 60.792 57.143 0.00 0.00 39.10 2.87
1743 3034 0.448197 TGCTGACGCTAGAGTTCTCG 59.552 55.000 0.00 0.00 36.97 4.04
1747 7787 2.024871 CGCTAGAGTTCTCGCCGG 59.975 66.667 0.00 0.00 31.74 6.13
1902 7958 1.168714 GTGACAAGGTTGCCCAGATC 58.831 55.000 0.00 0.00 0.00 2.75
2061 8120 1.169661 ACTATCTGAGGCGCGGAGAG 61.170 60.000 18.35 18.35 44.88 3.20
2264 10060 1.209128 CGTAGATGTAGCAAAGCCCG 58.791 55.000 0.00 0.00 0.00 6.13
2265 10061 1.470979 CGTAGATGTAGCAAAGCCCGT 60.471 52.381 0.00 0.00 0.00 5.28
2266 10062 2.202566 GTAGATGTAGCAAAGCCCGTC 58.797 52.381 0.00 0.00 0.00 4.79
2267 10063 0.905357 AGATGTAGCAAAGCCCGTCT 59.095 50.000 0.00 0.00 0.00 4.18
2268 10064 2.108168 AGATGTAGCAAAGCCCGTCTA 58.892 47.619 0.00 0.00 28.87 2.59
2269 10065 2.159085 AGATGTAGCAAAGCCCGTCTAC 60.159 50.000 0.00 0.00 33.80 2.59
2270 10066 0.108992 TGTAGCAAAGCCCGTCTACG 60.109 55.000 0.00 0.00 35.42 3.51
2271 10067 0.171903 GTAGCAAAGCCCGTCTACGA 59.828 55.000 3.65 0.00 43.02 3.43
2272 10068 0.171903 TAGCAAAGCCCGTCTACGAC 59.828 55.000 3.65 0.00 43.02 4.34
2278 10074 1.065928 GCCCGTCTACGACATGGAG 59.934 63.158 3.65 0.00 43.02 3.86
2287 10083 1.079819 CGACATGGAGCGTGGAACT 60.080 57.895 0.00 0.00 31.75 3.01
2305 10101 2.244117 CTACTGCCATGCACGACCCT 62.244 60.000 0.00 0.00 33.79 4.34
2311 10107 4.082523 ATGCACGACCCTGGTCCG 62.083 66.667 10.65 8.36 41.76 4.79
2333 10129 4.854924 TGCCCGATGATGCCACGG 62.855 66.667 0.00 0.00 45.24 4.94
2336 10132 2.514592 CCGATGATGCCACGGCTT 60.515 61.111 9.92 2.39 42.51 4.35
2353 10149 1.664016 GCTTTGATATTGATGCCCGCG 60.664 52.381 0.00 0.00 0.00 6.46
2354 10150 0.950836 TTTGATATTGATGCCCGCGG 59.049 50.000 21.04 21.04 0.00 6.46
2410 10207 8.939201 TTAATGTTGTTTTCTGCATCTTGAAA 57.061 26.923 0.00 0.00 0.00 2.69
2412 10209 5.108517 TGTTGTTTTCTGCATCTTGAAACC 58.891 37.500 0.00 0.00 32.72 3.27
2417 10214 1.089920 CTGCATCTTGAAACCGGGAG 58.910 55.000 6.32 0.00 0.00 4.30
2439 10236 6.627671 GGAGTCGTTAAATATCGATTTTGCAC 59.372 38.462 1.71 2.06 36.62 4.57
2473 10270 5.736951 AGTGCTTATCCCATCTAGATGAC 57.263 43.478 30.40 18.46 41.20 3.06
2498 10295 4.253685 GTGGAACTATGCAAAGCTAGTCA 58.746 43.478 0.00 0.00 0.00 3.41
2581 10473 8.964476 AGACACAAAATCTTCTCTTCTTACAA 57.036 30.769 0.00 0.00 0.00 2.41
2624 10516 0.324943 TACCCAGCTCACTTCAAGCC 59.675 55.000 0.00 0.00 40.75 4.35
2657 10549 1.678635 CCCCATCGCCACACACATT 60.679 57.895 0.00 0.00 0.00 2.71
2763 10655 2.100916 ACAGTTTGAGTACACGAGCAGT 59.899 45.455 0.00 0.00 0.00 4.40
2807 10699 2.270850 GGATTGGCGGCCACAGTA 59.729 61.111 23.78 7.52 30.78 2.74
2822 10714 1.078356 AGTAGCCGCTCACTCGAGA 60.078 57.895 21.68 0.00 42.34 4.04
2837 10729 1.721664 CGAGACCGTAATCCTCGCCA 61.722 60.000 0.00 0.00 42.34 5.69
2888 10780 0.679960 TCCTCATCGCCTCGTTCTCA 60.680 55.000 0.00 0.00 0.00 3.27
3023 10915 8.873215 ATATCAATGTAACTGTAGAAACTCGG 57.127 34.615 0.00 0.00 0.00 4.63
3024 10916 4.927425 TCAATGTAACTGTAGAAACTCGGC 59.073 41.667 0.00 0.00 0.00 5.54
3025 10917 2.937591 TGTAACTGTAGAAACTCGGCG 58.062 47.619 0.00 0.00 0.00 6.46
3035 10927 0.108329 AAACTCGGCGATACACCCAG 60.108 55.000 11.27 0.00 0.00 4.45
3100 10999 4.907875 TCTGGGTTAGGAAATGAGATAGGG 59.092 45.833 0.00 0.00 0.00 3.53
3101 11000 3.980698 TGGGTTAGGAAATGAGATAGGGG 59.019 47.826 0.00 0.00 0.00 4.79
3102 11001 3.244946 GGGTTAGGAAATGAGATAGGGGC 60.245 52.174 0.00 0.00 0.00 5.80
3123 11022 3.784525 GCAGCTAAAAACGCGGTAAGATC 60.785 47.826 12.47 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.843753 GAACAACAAAAGTCGCCAACG 59.156 47.619 0.00 0.00 42.01 4.10
4 5 2.190161 GGAACAACAAAAGTCGCCAAC 58.810 47.619 0.00 0.00 0.00 3.77
8 9 0.379316 ACCGGAACAACAAAAGTCGC 59.621 50.000 9.46 0.00 0.00 5.19
10 11 1.133407 TGCACCGGAACAACAAAAGTC 59.867 47.619 9.46 0.00 0.00 3.01
11 12 1.178276 TGCACCGGAACAACAAAAGT 58.822 45.000 9.46 0.00 0.00 2.66
12 13 2.192624 CTTGCACCGGAACAACAAAAG 58.807 47.619 9.46 0.00 0.00 2.27
14 15 1.178276 ACTTGCACCGGAACAACAAA 58.822 45.000 9.46 0.00 0.00 2.83
15 16 1.133407 GAACTTGCACCGGAACAACAA 59.867 47.619 9.46 3.78 0.00 2.83
16 17 0.736053 GAACTTGCACCGGAACAACA 59.264 50.000 9.46 0.00 0.00 3.33
18 19 1.757682 AAGAACTTGCACCGGAACAA 58.242 45.000 9.46 11.29 0.00 2.83
19 20 1.757682 AAAGAACTTGCACCGGAACA 58.242 45.000 9.46 1.84 0.00 3.18
20 21 4.094442 CCTATAAAGAACTTGCACCGGAAC 59.906 45.833 9.46 0.00 0.00 3.62
21 22 4.258543 CCTATAAAGAACTTGCACCGGAA 58.741 43.478 9.46 0.00 0.00 4.30
22 23 3.370103 CCCTATAAAGAACTTGCACCGGA 60.370 47.826 9.46 0.00 0.00 5.14
23 24 2.943033 CCCTATAAAGAACTTGCACCGG 59.057 50.000 0.00 0.00 0.00 5.28
25 26 3.621558 AGCCCTATAAAGAACTTGCACC 58.378 45.455 0.00 0.00 0.00 5.01
29 30 7.110155 TCCAACTAAGCCCTATAAAGAACTTG 58.890 38.462 0.00 0.00 0.00 3.16
30 31 7.266905 TCCAACTAAGCCCTATAAAGAACTT 57.733 36.000 0.00 0.00 0.00 2.66
32 33 7.280356 TCATCCAACTAAGCCCTATAAAGAAC 58.720 38.462 0.00 0.00 0.00 3.01
34 35 7.347222 TCTTCATCCAACTAAGCCCTATAAAGA 59.653 37.037 0.00 0.00 0.00 2.52
35 36 7.509546 TCTTCATCCAACTAAGCCCTATAAAG 58.490 38.462 0.00 0.00 0.00 1.85
37 38 7.633018 ATCTTCATCCAACTAAGCCCTATAA 57.367 36.000 0.00 0.00 0.00 0.98
38 39 7.633018 AATCTTCATCCAACTAAGCCCTATA 57.367 36.000 0.00 0.00 0.00 1.31
39 40 6.521527 AATCTTCATCCAACTAAGCCCTAT 57.478 37.500 0.00 0.00 0.00 2.57
40 41 5.975988 AATCTTCATCCAACTAAGCCCTA 57.024 39.130 0.00 0.00 0.00 3.53
41 42 4.870021 AATCTTCATCCAACTAAGCCCT 57.130 40.909 0.00 0.00 0.00 5.19
42 43 4.440663 GCAAATCTTCATCCAACTAAGCCC 60.441 45.833 0.00 0.00 0.00 5.19
48 49 2.489329 CCACGCAAATCTTCATCCAACT 59.511 45.455 0.00 0.00 0.00 3.16
49 50 2.228822 ACCACGCAAATCTTCATCCAAC 59.771 45.455 0.00 0.00 0.00 3.77
50 51 2.513753 ACCACGCAAATCTTCATCCAA 58.486 42.857 0.00 0.00 0.00 3.53
51 52 2.198827 ACCACGCAAATCTTCATCCA 57.801 45.000 0.00 0.00 0.00 3.41
52 53 2.159379 GGAACCACGCAAATCTTCATCC 60.159 50.000 0.00 0.00 0.00 3.51
53 54 2.487762 TGGAACCACGCAAATCTTCATC 59.512 45.455 0.00 0.00 0.00 2.92
54 55 2.513753 TGGAACCACGCAAATCTTCAT 58.486 42.857 0.00 0.00 0.00 2.57
55 56 1.974265 TGGAACCACGCAAATCTTCA 58.026 45.000 0.00 0.00 0.00 3.02
56 57 2.487762 TGATGGAACCACGCAAATCTTC 59.512 45.455 0.00 0.00 0.00 2.87
57 58 2.513753 TGATGGAACCACGCAAATCTT 58.486 42.857 0.00 0.00 0.00 2.40
58 59 2.198827 TGATGGAACCACGCAAATCT 57.801 45.000 0.00 0.00 0.00 2.40
59 60 2.480073 CCATGATGGAACCACGCAAATC 60.480 50.000 5.27 0.00 40.96 2.17
60 61 1.477700 CCATGATGGAACCACGCAAAT 59.522 47.619 5.27 0.00 40.96 2.32
63 64 1.378382 CCCATGATGGAACCACGCA 60.378 57.895 14.26 0.00 40.96 5.24
64 65 0.679640 TTCCCATGATGGAACCACGC 60.680 55.000 14.26 0.00 40.96 5.34
65 66 1.065491 TCTTCCCATGATGGAACCACG 60.065 52.381 14.26 0.00 40.96 4.94
66 67 2.025887 ACTCTTCCCATGATGGAACCAC 60.026 50.000 14.26 0.00 40.96 4.16
67 68 2.025981 CACTCTTCCCATGATGGAACCA 60.026 50.000 14.26 0.00 40.96 3.67
68 69 2.239654 TCACTCTTCCCATGATGGAACC 59.760 50.000 14.26 0.00 40.96 3.62
69 70 3.634397 TCACTCTTCCCATGATGGAAC 57.366 47.619 14.26 0.00 40.96 3.62
72 73 3.851458 TCATCACTCTTCCCATGATGG 57.149 47.619 3.98 3.98 46.40 3.51
74 75 3.978672 TCCATCATCACTCTTCCCATGAT 59.021 43.478 0.00 0.00 36.59 2.45
76 77 3.496337 CCTCCATCATCACTCTTCCCATG 60.496 52.174 0.00 0.00 0.00 3.66
77 78 2.709934 CCTCCATCATCACTCTTCCCAT 59.290 50.000 0.00 0.00 0.00 4.00
78 79 2.121948 CCTCCATCATCACTCTTCCCA 58.878 52.381 0.00 0.00 0.00 4.37
79 80 2.368221 CTCCTCCATCATCACTCTTCCC 59.632 54.545 0.00 0.00 0.00 3.97
80 81 2.224257 GCTCCTCCATCATCACTCTTCC 60.224 54.545 0.00 0.00 0.00 3.46
81 82 2.433604 TGCTCCTCCATCATCACTCTTC 59.566 50.000 0.00 0.00 0.00 2.87
83 84 1.761784 GTGCTCCTCCATCATCACTCT 59.238 52.381 0.00 0.00 0.00 3.24
85 86 0.835941 GGTGCTCCTCCATCATCACT 59.164 55.000 0.00 0.00 0.00 3.41
86 87 0.835941 AGGTGCTCCTCCATCATCAC 59.164 55.000 0.18 0.00 40.58 3.06
87 88 1.487976 GAAGGTGCTCCTCCATCATCA 59.512 52.381 7.99 0.00 44.35 3.07
88 89 1.487976 TGAAGGTGCTCCTCCATCATC 59.512 52.381 7.99 1.39 44.35 2.92
89 90 1.489649 CTGAAGGTGCTCCTCCATCAT 59.510 52.381 7.99 0.00 44.35 2.45
91 92 0.908198 ACTGAAGGTGCTCCTCCATC 59.092 55.000 7.99 2.90 44.35 3.51
92 93 1.366319 AACTGAAGGTGCTCCTCCAT 58.634 50.000 7.99 0.00 44.35 3.41
95 96 2.550830 TCAAACTGAAGGTGCTCCTC 57.449 50.000 7.99 2.79 44.35 3.71
97 98 2.087646 GGATCAAACTGAAGGTGCTCC 58.912 52.381 0.00 0.00 0.00 4.70
98 99 2.746362 CTGGATCAAACTGAAGGTGCTC 59.254 50.000 0.00 0.00 0.00 4.26
99 100 2.107204 ACTGGATCAAACTGAAGGTGCT 59.893 45.455 0.00 0.00 0.00 4.40
100 101 2.227388 CACTGGATCAAACTGAAGGTGC 59.773 50.000 0.00 0.00 0.00 5.01
101 102 2.227388 GCACTGGATCAAACTGAAGGTG 59.773 50.000 0.00 0.00 0.00 4.00
103 104 2.787994 AGCACTGGATCAAACTGAAGG 58.212 47.619 0.00 0.00 0.00 3.46
104 105 3.567164 ACAAGCACTGGATCAAACTGAAG 59.433 43.478 0.00 0.00 0.00 3.02
105 106 3.554934 ACAAGCACTGGATCAAACTGAA 58.445 40.909 0.00 0.00 0.00 3.02
106 107 3.213206 ACAAGCACTGGATCAAACTGA 57.787 42.857 0.00 0.00 0.00 3.41
107 108 4.067896 ACTACAAGCACTGGATCAAACTG 58.932 43.478 0.00 0.00 0.00 3.16
108 109 4.202357 TGACTACAAGCACTGGATCAAACT 60.202 41.667 0.00 0.00 0.00 2.66
110 111 4.350368 TGACTACAAGCACTGGATCAAA 57.650 40.909 0.00 0.00 0.00 2.69
111 112 4.507710 GATGACTACAAGCACTGGATCAA 58.492 43.478 0.00 0.00 0.00 2.57
113 114 3.119291 CGATGACTACAAGCACTGGATC 58.881 50.000 0.00 0.00 0.00 3.36
114 115 2.739932 GCGATGACTACAAGCACTGGAT 60.740 50.000 0.00 0.00 35.16 3.41
116 117 1.002366 GCGATGACTACAAGCACTGG 58.998 55.000 0.00 0.00 35.16 4.00
117 118 2.001812 AGCGATGACTACAAGCACTG 57.998 50.000 0.00 0.00 36.63 3.66
119 120 3.422417 TCTAGCGATGACTACAAGCAC 57.578 47.619 0.00 0.00 36.63 4.40
130 131 2.608268 CATCTCAGCCATCTAGCGATG 58.392 52.381 0.00 0.00 45.31 3.84
131 132 1.549620 CCATCTCAGCCATCTAGCGAT 59.450 52.381 0.00 0.00 38.01 4.58
135 136 5.999205 AGATAACCATCTCAGCCATCTAG 57.001 43.478 0.00 0.00 36.80 2.43
136 137 6.327365 TCAAAGATAACCATCTCAGCCATCTA 59.673 38.462 0.00 0.00 40.81 1.98
137 138 5.131642 TCAAAGATAACCATCTCAGCCATCT 59.868 40.000 0.00 0.00 40.81 2.90
138 139 5.371526 TCAAAGATAACCATCTCAGCCATC 58.628 41.667 0.00 0.00 40.81 3.51
139 140 5.378230 TCAAAGATAACCATCTCAGCCAT 57.622 39.130 0.00 0.00 40.81 4.40
140 141 4.842531 TCAAAGATAACCATCTCAGCCA 57.157 40.909 0.00 0.00 40.81 4.75
142 143 7.148018 TGGAAATTCAAAGATAACCATCTCAGC 60.148 37.037 0.00 0.00 40.81 4.26
143 144 8.284945 TGGAAATTCAAAGATAACCATCTCAG 57.715 34.615 0.00 0.00 40.81 3.35
428 429 1.872952 TGTTCGCTGAAGTTCATGTGG 59.127 47.619 5.91 0.00 0.00 4.17
429 430 3.818961 ATGTTCGCTGAAGTTCATGTG 57.181 42.857 5.91 7.64 0.00 3.21
430 431 5.063944 GTGATATGTTCGCTGAAGTTCATGT 59.936 40.000 5.91 0.00 31.85 3.21
431 432 5.063817 TGTGATATGTTCGCTGAAGTTCATG 59.936 40.000 5.91 2.49 35.78 3.07
432 433 5.063944 GTGTGATATGTTCGCTGAAGTTCAT 59.936 40.000 5.91 0.00 35.78 2.57
433 434 4.388773 GTGTGATATGTTCGCTGAAGTTCA 59.611 41.667 5.25 5.25 35.78 3.18
434 435 4.490959 CGTGTGATATGTTCGCTGAAGTTC 60.491 45.833 0.00 0.00 35.78 3.01
435 436 3.367932 CGTGTGATATGTTCGCTGAAGTT 59.632 43.478 0.00 0.00 35.78 2.66
436 437 2.923655 CGTGTGATATGTTCGCTGAAGT 59.076 45.455 0.00 0.00 35.78 3.01
437 438 3.179048 TCGTGTGATATGTTCGCTGAAG 58.821 45.455 0.00 0.00 35.78 3.02
438 439 3.224884 TCGTGTGATATGTTCGCTGAA 57.775 42.857 0.00 0.00 35.78 3.02
439 440 2.921121 GTTCGTGTGATATGTTCGCTGA 59.079 45.455 0.00 0.00 35.78 4.26
440 441 2.666022 TGTTCGTGTGATATGTTCGCTG 59.334 45.455 0.00 0.00 35.78 5.18
441 442 2.666508 GTGTTCGTGTGATATGTTCGCT 59.333 45.455 0.00 0.00 35.78 4.93
442 443 2.410392 TGTGTTCGTGTGATATGTTCGC 59.590 45.455 0.00 0.00 35.31 4.70
443 444 4.384547 TCTTGTGTTCGTGTGATATGTTCG 59.615 41.667 0.00 0.00 0.00 3.95
444 445 5.839262 TCTTGTGTTCGTGTGATATGTTC 57.161 39.130 0.00 0.00 0.00 3.18
445 446 5.989168 TCTTCTTGTGTTCGTGTGATATGTT 59.011 36.000 0.00 0.00 0.00 2.71
446 447 5.538118 TCTTCTTGTGTTCGTGTGATATGT 58.462 37.500 0.00 0.00 0.00 2.29
447 448 6.073819 TGTTCTTCTTGTGTTCGTGTGATATG 60.074 38.462 0.00 0.00 0.00 1.78
448 449 5.989168 TGTTCTTCTTGTGTTCGTGTGATAT 59.011 36.000 0.00 0.00 0.00 1.63
449 450 5.233476 GTGTTCTTCTTGTGTTCGTGTGATA 59.767 40.000 0.00 0.00 0.00 2.15
450 451 4.034048 GTGTTCTTCTTGTGTTCGTGTGAT 59.966 41.667 0.00 0.00 0.00 3.06
451 452 3.369756 GTGTTCTTCTTGTGTTCGTGTGA 59.630 43.478 0.00 0.00 0.00 3.58
452 453 3.124466 TGTGTTCTTCTTGTGTTCGTGTG 59.876 43.478 0.00 0.00 0.00 3.82
453 454 3.331150 TGTGTTCTTCTTGTGTTCGTGT 58.669 40.909 0.00 0.00 0.00 4.49
454 455 4.518217 GATGTGTTCTTCTTGTGTTCGTG 58.482 43.478 0.00 0.00 0.00 4.35
455 456 3.245284 CGATGTGTTCTTCTTGTGTTCGT 59.755 43.478 0.00 0.00 0.00 3.85
456 457 3.787826 CGATGTGTTCTTCTTGTGTTCG 58.212 45.455 0.00 0.00 0.00 3.95
457 458 3.248602 AGCGATGTGTTCTTCTTGTGTTC 59.751 43.478 0.00 0.00 0.00 3.18
458 459 3.206150 AGCGATGTGTTCTTCTTGTGTT 58.794 40.909 0.00 0.00 0.00 3.32
459 460 2.802816 GAGCGATGTGTTCTTCTTGTGT 59.197 45.455 0.00 0.00 0.00 3.72
460 461 2.802247 TGAGCGATGTGTTCTTCTTGTG 59.198 45.455 0.00 0.00 0.00 3.33
461 462 3.111853 TGAGCGATGTGTTCTTCTTGT 57.888 42.857 0.00 0.00 0.00 3.16
462 463 3.727079 GCATGAGCGATGTGTTCTTCTTG 60.727 47.826 0.00 0.00 34.14 3.02
463 464 2.417933 GCATGAGCGATGTGTTCTTCTT 59.582 45.455 0.00 0.00 34.14 2.52
464 465 2.005451 GCATGAGCGATGTGTTCTTCT 58.995 47.619 0.00 0.00 34.14 2.85
465 466 1.063174 GGCATGAGCGATGTGTTCTTC 59.937 52.381 0.00 0.00 43.41 2.87
466 467 1.089920 GGCATGAGCGATGTGTTCTT 58.910 50.000 0.00 0.00 43.41 2.52
467 468 0.036105 TGGCATGAGCGATGTGTTCT 60.036 50.000 0.00 0.00 43.41 3.01
468 469 0.097674 GTGGCATGAGCGATGTGTTC 59.902 55.000 0.00 0.00 43.41 3.18
469 470 0.606130 TGTGGCATGAGCGATGTGTT 60.606 50.000 0.00 0.00 43.41 3.32
470 471 1.003476 TGTGGCATGAGCGATGTGT 60.003 52.632 0.00 0.00 43.41 3.72
471 472 1.300266 TGTGTGGCATGAGCGATGTG 61.300 55.000 0.00 0.00 43.41 3.21
472 473 0.606130 TTGTGTGGCATGAGCGATGT 60.606 50.000 0.00 0.00 43.41 3.06
473 474 0.098200 CTTGTGTGGCATGAGCGATG 59.902 55.000 0.00 0.00 43.41 3.84
474 475 1.028330 CCTTGTGTGGCATGAGCGAT 61.028 55.000 0.00 0.00 43.41 4.58
475 476 1.672030 CCTTGTGTGGCATGAGCGA 60.672 57.895 0.00 0.00 43.41 4.93
476 477 1.968017 ACCTTGTGTGGCATGAGCG 60.968 57.895 0.00 0.00 43.41 5.03
477 478 1.582968 CACCTTGTGTGGCATGAGC 59.417 57.895 0.00 0.00 41.52 4.26
478 479 1.174078 TGCACCTTGTGTGGCATGAG 61.174 55.000 0.00 0.00 45.55 2.90
479 480 0.754587 TTGCACCTTGTGTGGCATGA 60.755 50.000 0.00 0.00 45.55 3.07
480 481 0.598158 GTTGCACCTTGTGTGGCATG 60.598 55.000 0.00 0.00 45.55 4.06
481 482 0.756442 AGTTGCACCTTGTGTGGCAT 60.756 50.000 0.00 0.00 45.55 4.40
482 483 1.379710 AGTTGCACCTTGTGTGGCA 60.380 52.632 0.00 0.00 45.55 4.92
483 484 1.360192 GAGTTGCACCTTGTGTGGC 59.640 57.895 0.00 0.00 45.55 5.01
484 485 1.102154 TTGAGTTGCACCTTGTGTGG 58.898 50.000 0.00 0.00 45.55 4.17
486 487 1.102978 GGTTGAGTTGCACCTTGTGT 58.897 50.000 0.00 0.00 35.75 3.72
487 488 1.066002 CTGGTTGAGTTGCACCTTGTG 59.934 52.381 0.00 0.00 36.51 3.33
488 489 1.064758 TCTGGTTGAGTTGCACCTTGT 60.065 47.619 0.00 0.00 0.00 3.16
489 490 1.605710 CTCTGGTTGAGTTGCACCTTG 59.394 52.381 0.00 0.00 37.99 3.61
490 491 1.972872 CTCTGGTTGAGTTGCACCTT 58.027 50.000 0.00 0.00 37.99 3.50
491 492 0.536006 GCTCTGGTTGAGTTGCACCT 60.536 55.000 0.00 0.00 44.41 4.00
492 493 0.819259 TGCTCTGGTTGAGTTGCACC 60.819 55.000 0.00 0.00 44.41 5.01
493 494 0.308993 GTGCTCTGGTTGAGTTGCAC 59.691 55.000 0.00 0.00 44.41 4.57
494 495 1.159713 CGTGCTCTGGTTGAGTTGCA 61.160 55.000 0.00 0.00 44.41 4.08
495 496 1.571460 CGTGCTCTGGTTGAGTTGC 59.429 57.895 0.00 0.00 44.41 4.17
496 497 1.159713 TGCGTGCTCTGGTTGAGTTG 61.160 55.000 0.00 0.00 44.41 3.16
497 498 0.882042 CTGCGTGCTCTGGTTGAGTT 60.882 55.000 0.00 0.00 44.41 3.01
498 499 1.301244 CTGCGTGCTCTGGTTGAGT 60.301 57.895 0.00 0.00 44.41 3.41
499 500 2.675056 GCTGCGTGCTCTGGTTGAG 61.675 63.158 0.00 0.00 45.33 3.02
500 501 2.666190 GCTGCGTGCTCTGGTTGA 60.666 61.111 0.00 0.00 38.95 3.18
501 502 3.730761 GGCTGCGTGCTCTGGTTG 61.731 66.667 0.00 0.00 42.39 3.77
502 503 3.772853 TTGGCTGCGTGCTCTGGTT 62.773 57.895 0.00 0.00 42.39 3.67
503 504 3.772853 TTTGGCTGCGTGCTCTGGT 62.773 57.895 0.00 0.00 42.39 4.00
504 505 2.979676 TTTGGCTGCGTGCTCTGG 60.980 61.111 0.00 0.00 42.39 3.86
505 506 1.859427 ATGTTTGGCTGCGTGCTCTG 61.859 55.000 0.00 0.00 42.39 3.35
506 507 1.580845 GATGTTTGGCTGCGTGCTCT 61.581 55.000 0.00 0.00 42.39 4.09
507 508 1.154150 GATGTTTGGCTGCGTGCTC 60.154 57.895 0.00 0.00 42.39 4.26
508 509 2.956987 GATGTTTGGCTGCGTGCT 59.043 55.556 0.00 0.00 42.39 4.40
509 510 2.502510 CGATGTTTGGCTGCGTGC 60.503 61.111 0.00 0.00 41.94 5.34
510 511 2.502510 GCGATGTTTGGCTGCGTG 60.503 61.111 0.00 0.00 0.00 5.34
511 512 4.088762 CGCGATGTTTGGCTGCGT 62.089 61.111 0.00 0.00 43.50 5.24
513 514 2.202349 GACGCGATGTTTGGCTGC 60.202 61.111 15.93 0.00 0.00 5.25
514 515 2.096406 CGACGCGATGTTTGGCTG 59.904 61.111 15.93 0.00 0.00 4.85
515 516 2.357034 ACGACGCGATGTTTGGCT 60.357 55.556 15.93 0.00 0.00 4.75
516 517 2.095843 GACGACGCGATGTTTGGC 59.904 61.111 15.93 0.00 0.00 4.52
517 518 2.736682 GGGACGACGCGATGTTTGG 61.737 63.158 15.93 0.00 0.00 3.28
518 519 1.561717 TTGGGACGACGCGATGTTTG 61.562 55.000 15.93 0.00 0.00 2.93
519 520 1.301087 TTGGGACGACGCGATGTTT 60.301 52.632 15.93 0.00 0.00 2.83
520 521 2.025418 GTTGGGACGACGCGATGTT 61.025 57.895 15.93 0.00 0.00 2.71
521 522 2.431942 GTTGGGACGACGCGATGT 60.432 61.111 15.93 10.98 0.00 3.06
522 523 2.024868 TTGTTGGGACGACGCGATG 61.025 57.895 15.93 7.01 0.00 3.84
523 524 2.025418 GTTGTTGGGACGACGCGAT 61.025 57.895 15.93 0.00 30.82 4.58
524 525 2.659244 GTTGTTGGGACGACGCGA 60.659 61.111 15.93 0.00 30.82 5.87
525 526 1.837538 ATTGTTGTTGGGACGACGCG 61.838 55.000 3.53 3.53 42.16 6.01
526 527 0.309612 AATTGTTGTTGGGACGACGC 59.690 50.000 0.00 0.00 42.16 5.19
527 528 1.600013 TCAATTGTTGTTGGGACGACG 59.400 47.619 5.13 0.00 42.16 5.12
528 529 2.031157 CCTCAATTGTTGTTGGGACGAC 60.031 50.000 5.13 0.00 40.08 4.34
529 530 2.226330 CCTCAATTGTTGTTGGGACGA 58.774 47.619 5.13 0.00 31.01 4.20
530 531 1.269448 CCCTCAATTGTTGTTGGGACG 59.731 52.381 5.13 0.00 43.16 4.79
531 532 2.035832 CACCCTCAATTGTTGTTGGGAC 59.964 50.000 21.00 0.00 43.16 4.46
532 533 2.091610 TCACCCTCAATTGTTGTTGGGA 60.092 45.455 21.00 6.98 43.16 4.37
533 534 2.297033 CTCACCCTCAATTGTTGTTGGG 59.703 50.000 5.13 12.14 44.68 4.12
534 535 2.297033 CCTCACCCTCAATTGTTGTTGG 59.703 50.000 5.13 3.06 0.00 3.77
535 536 2.297033 CCCTCACCCTCAATTGTTGTTG 59.703 50.000 5.13 0.00 0.00 3.33
536 537 2.091333 ACCCTCACCCTCAATTGTTGTT 60.091 45.455 5.13 0.00 0.00 2.83
537 538 1.499007 ACCCTCACCCTCAATTGTTGT 59.501 47.619 5.13 0.00 0.00 3.32
538 539 1.888512 CACCCTCACCCTCAATTGTTG 59.111 52.381 5.13 0.00 0.00 3.33
539 540 1.780309 TCACCCTCACCCTCAATTGTT 59.220 47.619 5.13 0.00 0.00 2.83
540 541 1.352352 CTCACCCTCACCCTCAATTGT 59.648 52.381 5.13 0.00 0.00 2.71
541 542 1.340405 CCTCACCCTCACCCTCAATTG 60.340 57.143 0.00 0.00 0.00 2.32
542 543 0.995024 CCTCACCCTCACCCTCAATT 59.005 55.000 0.00 0.00 0.00 2.32
543 544 0.916358 CCCTCACCCTCACCCTCAAT 60.916 60.000 0.00 0.00 0.00 2.57
544 545 1.538876 CCCTCACCCTCACCCTCAA 60.539 63.158 0.00 0.00 0.00 3.02
545 546 2.122729 CCCTCACCCTCACCCTCA 59.877 66.667 0.00 0.00 0.00 3.86
546 547 1.687493 CTCCCTCACCCTCACCCTC 60.687 68.421 0.00 0.00 0.00 4.30
547 548 2.452114 CTCCCTCACCCTCACCCT 59.548 66.667 0.00 0.00 0.00 4.34
548 549 2.689034 CCTCCCTCACCCTCACCC 60.689 72.222 0.00 0.00 0.00 4.61
549 550 2.689034 CCCTCCCTCACCCTCACC 60.689 72.222 0.00 0.00 0.00 4.02
550 551 3.403558 GCCCTCCCTCACCCTCAC 61.404 72.222 0.00 0.00 0.00 3.51
552 553 4.779733 TCGCCCTCCCTCACCCTC 62.780 72.222 0.00 0.00 0.00 4.30
555 556 4.083862 GTGTCGCCCTCCCTCACC 62.084 72.222 0.00 0.00 0.00 4.02
556 557 4.083862 GGTGTCGCCCTCCCTCAC 62.084 72.222 0.00 0.00 0.00 3.51
557 558 2.856039 CTAGGTGTCGCCCTCCCTCA 62.856 65.000 0.00 0.00 38.26 3.86
558 559 2.043248 TAGGTGTCGCCCTCCCTC 60.043 66.667 0.00 0.00 38.26 4.30
559 560 2.042843 CTAGGTGTCGCCCTCCCT 60.043 66.667 0.00 0.00 38.26 4.20
560 561 2.363925 ACTAGGTGTCGCCCTCCC 60.364 66.667 0.00 0.00 38.26 4.30
561 562 2.424733 GGACTAGGTGTCGCCCTCC 61.425 68.421 0.00 0.00 46.24 4.30
562 563 1.380112 AGGACTAGGTGTCGCCCTC 60.380 63.158 0.00 0.00 46.24 4.30
563 564 1.682684 CAGGACTAGGTGTCGCCCT 60.683 63.158 0.00 0.00 46.24 5.19
564 565 2.722201 CCAGGACTAGGTGTCGCCC 61.722 68.421 0.00 0.00 46.24 6.13
565 566 2.893398 CCAGGACTAGGTGTCGCC 59.107 66.667 0.00 0.00 46.24 5.54
566 567 2.184579 GCCAGGACTAGGTGTCGC 59.815 66.667 0.00 0.00 46.24 5.19
567 568 1.330655 ATGGCCAGGACTAGGTGTCG 61.331 60.000 13.05 0.00 46.24 4.35
568 569 0.179000 CATGGCCAGGACTAGGTGTC 59.821 60.000 13.35 0.00 44.63 3.67
569 570 1.274703 CCATGGCCAGGACTAGGTGT 61.275 60.000 21.32 0.00 0.00 4.16
570 571 1.528824 CCATGGCCAGGACTAGGTG 59.471 63.158 21.32 5.21 0.00 4.00
571 572 1.694169 CCCATGGCCAGGACTAGGT 60.694 63.158 21.32 0.00 0.00 3.08
572 573 3.125376 GCCCATGGCCAGGACTAGG 62.125 68.421 21.32 12.74 44.06 3.02
573 574 2.512896 GCCCATGGCCAGGACTAG 59.487 66.667 21.32 5.63 44.06 2.57
634 635 0.819666 CTCAAAATCTAGGCCCGGGC 60.820 60.000 38.57 38.57 41.06 6.13
635 636 0.819666 GCTCAAAATCTAGGCCCGGG 60.820 60.000 19.09 19.09 0.00 5.73
636 637 0.819666 GGCTCAAAATCTAGGCCCGG 60.820 60.000 0.00 0.00 37.12 5.73
637 638 2.707902 GGCTCAAAATCTAGGCCCG 58.292 57.895 0.00 0.00 37.12 6.13
640 641 1.943340 CTTCGGGCTCAAAATCTAGGC 59.057 52.381 0.00 0.00 37.55 3.93
641 642 2.565841 CCTTCGGGCTCAAAATCTAGG 58.434 52.381 0.00 0.00 0.00 3.02
671 672 1.743996 CAGAAAACCTAGGCCAGAGC 58.256 55.000 9.30 0.00 38.76 4.09
672 673 1.680249 GGCAGAAAACCTAGGCCAGAG 60.680 57.143 9.30 0.60 44.01 3.35
673 674 0.328258 GGCAGAAAACCTAGGCCAGA 59.672 55.000 9.30 0.00 44.01 3.86
674 675 0.329596 AGGCAGAAAACCTAGGCCAG 59.670 55.000 9.30 0.00 46.96 4.85
675 676 0.328258 GAGGCAGAAAACCTAGGCCA 59.672 55.000 9.30 0.00 46.96 5.36
676 677 0.744771 CGAGGCAGAAAACCTAGGCC 60.745 60.000 9.30 1.78 44.92 5.19
677 678 0.744771 CCGAGGCAGAAAACCTAGGC 60.745 60.000 9.30 0.00 42.25 3.93
678 679 0.107654 CCCGAGGCAGAAAACCTAGG 60.108 60.000 7.41 7.41 46.56 3.02
679 680 3.460648 CCCGAGGCAGAAAACCTAG 57.539 57.895 0.00 0.00 37.77 3.02
698 699 2.754254 GGGCCGGGCTTACCAAAG 60.754 66.667 28.80 0.00 40.22 2.77
699 700 3.577334 CTGGGCCGGGCTTACCAAA 62.577 63.158 28.80 4.20 40.22 3.28
700 701 4.041762 CTGGGCCGGGCTTACCAA 62.042 66.667 28.80 0.00 40.22 3.67
722 723 0.671781 CGCTATACCTGGCCATCTGC 60.672 60.000 5.51 4.54 40.16 4.26
723 724 0.969149 TCGCTATACCTGGCCATCTG 59.031 55.000 5.51 0.00 0.00 2.90
724 725 0.969894 GTCGCTATACCTGGCCATCT 59.030 55.000 5.51 0.00 0.00 2.90
725 726 0.679505 TGTCGCTATACCTGGCCATC 59.320 55.000 5.51 0.00 0.00 3.51
726 727 0.393077 GTGTCGCTATACCTGGCCAT 59.607 55.000 5.51 0.00 0.00 4.40
727 728 1.682451 GGTGTCGCTATACCTGGCCA 61.682 60.000 4.71 4.71 34.18 5.36
728 729 1.069258 GGTGTCGCTATACCTGGCC 59.931 63.158 0.00 0.00 34.18 5.36
729 730 1.069258 GGGTGTCGCTATACCTGGC 59.931 63.158 4.15 0.00 37.08 4.85
730 731 1.362717 CGGGTGTCGCTATACCTGG 59.637 63.158 5.18 0.00 39.10 4.45
731 732 0.248907 CACGGGTGTCGCTATACCTG 60.249 60.000 10.95 10.95 46.14 4.00
732 733 0.394762 TCACGGGTGTCGCTATACCT 60.395 55.000 4.15 0.00 43.89 3.08
733 734 0.030369 CTCACGGGTGTCGCTATACC 59.970 60.000 0.00 0.00 43.89 2.73
734 735 0.030369 CCTCACGGGTGTCGCTATAC 59.970 60.000 0.00 0.00 43.89 1.47
735 736 1.731433 GCCTCACGGGTGTCGCTATA 61.731 60.000 0.00 0.00 43.89 1.31
736 737 3.077519 GCCTCACGGGTGTCGCTAT 62.078 63.158 0.00 0.00 43.89 2.97
737 738 3.755628 GCCTCACGGGTGTCGCTA 61.756 66.667 0.00 0.00 43.89 4.26
741 742 4.736896 GTCGGCCTCACGGGTGTC 62.737 72.222 0.00 0.00 37.43 3.67
761 762 3.997064 CTGTGGAAGCGGAGGAGCG 62.997 68.421 0.00 0.00 43.00 5.03
762 763 1.965754 ATCTGTGGAAGCGGAGGAGC 61.966 60.000 0.00 0.00 37.41 4.70
763 764 0.179089 CATCTGTGGAAGCGGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
770 771 1.336125 GCTATTGGCATCTGTGGAAGC 59.664 52.381 0.00 0.00 41.35 3.86
807 808 2.097825 GGAATTGCAGCCACTCTGAAT 58.902 47.619 0.00 0.00 45.72 2.57
869 870 6.923508 CGTGATAAATGCTCCAGTCTGTATTA 59.076 38.462 0.00 0.00 0.00 0.98
871 872 5.069119 TCGTGATAAATGCTCCAGTCTGTAT 59.931 40.000 0.00 0.00 0.00 2.29
872 873 4.401202 TCGTGATAAATGCTCCAGTCTGTA 59.599 41.667 0.00 0.00 0.00 2.74
873 874 3.195610 TCGTGATAAATGCTCCAGTCTGT 59.804 43.478 0.00 0.00 0.00 3.41
874 875 3.785486 TCGTGATAAATGCTCCAGTCTG 58.215 45.455 0.00 0.00 0.00 3.51
906 907 9.194271 TGCGTATTGGTTTTCTTTAATTAAACC 57.806 29.630 6.54 9.31 46.95 3.27
923 1225 3.752747 TCAGATGGCATAATGCGTATTGG 59.247 43.478 9.16 2.42 46.21 3.16
939 1241 1.680522 CCTCCCCTCCGTGTCAGATG 61.681 65.000 0.00 0.00 0.00 2.90
942 1244 3.077556 CCCTCCCCTCCGTGTCAG 61.078 72.222 0.00 0.00 0.00 3.51
955 1257 3.756963 GGACCACTTTTTATGTGACCCTC 59.243 47.826 0.00 0.00 37.60 4.30
956 1258 3.397955 AGGACCACTTTTTATGTGACCCT 59.602 43.478 0.00 0.00 37.60 4.34
957 1259 3.506067 CAGGACCACTTTTTATGTGACCC 59.494 47.826 0.00 0.00 37.60 4.46
958 1260 3.057526 GCAGGACCACTTTTTATGTGACC 60.058 47.826 0.00 0.00 37.60 4.02
959 1261 3.821033 AGCAGGACCACTTTTTATGTGAC 59.179 43.478 0.00 0.00 37.60 3.67
1002 1305 5.300792 TCTTATTTGACCTTTGGTTGTGACC 59.699 40.000 0.00 0.00 46.71 4.02
1004 1307 7.123547 AGTTTCTTATTTGACCTTTGGTTGTGA 59.876 33.333 0.00 0.00 35.25 3.58
1028 1331 2.762535 ACGTTAGCAGCATTGGTAGT 57.237 45.000 0.00 0.00 38.42 2.73
1050 1353 8.021973 GGCAATGCTCATGAAAGAAAGATATAG 58.978 37.037 4.82 0.00 0.00 1.31
1059 1362 4.562082 CAAAAGGCAATGCTCATGAAAGA 58.438 39.130 4.82 0.00 0.00 2.52
1060 1367 3.124636 GCAAAAGGCAATGCTCATGAAAG 59.875 43.478 4.82 0.00 43.97 2.62
1107 1483 5.743636 TGGCTGTATATGCTCATACATGA 57.256 39.130 0.00 0.00 39.89 3.07
1117 1493 3.423539 TCCCTTCATGGCTGTATATGC 57.576 47.619 0.00 0.00 0.00 3.14
1180 1556 2.397597 AGGGTGCTTTTGACCAAACAT 58.602 42.857 0.00 0.00 34.89 2.71
1191 1567 1.685820 GTGAGGCCTAGGGTGCTTT 59.314 57.895 4.42 0.00 0.00 3.51
1216 1592 0.737715 GCCTCGTCATCTTCAGCGTT 60.738 55.000 0.00 0.00 0.00 4.84
1221 1597 1.215382 CGTGGCCTCGTCATCTTCA 59.785 57.895 18.86 0.00 0.00 3.02
1222 1598 0.108804 TTCGTGGCCTCGTCATCTTC 60.109 55.000 25.10 0.00 0.00 2.87
1223 1599 0.320374 TTTCGTGGCCTCGTCATCTT 59.680 50.000 25.10 0.00 0.00 2.40
1224 1600 0.320374 TTTTCGTGGCCTCGTCATCT 59.680 50.000 25.10 0.00 0.00 2.90
1225 1601 0.721718 CTTTTCGTGGCCTCGTCATC 59.278 55.000 25.10 0.00 0.00 2.92
1226 1602 0.320374 TCTTTTCGTGGCCTCGTCAT 59.680 50.000 25.10 0.00 0.00 3.06
1227 1603 0.319555 CTCTTTTCGTGGCCTCGTCA 60.320 55.000 25.10 11.79 0.00 4.35
1296 1675 2.355837 TTGCACACCGAGCGTCTC 60.356 61.111 0.00 0.00 33.85 3.36
1329 1708 0.601558 TCCAGTACAAGTGGTCTCGC 59.398 55.000 0.00 0.00 39.71 5.03
1484 1869 4.717629 TGGGCTCGTGCGAGAACG 62.718 66.667 23.57 0.00 44.53 3.95
1486 1871 4.717629 CGTGGGCTCGTGCGAGAA 62.718 66.667 23.57 6.84 44.53 2.87
1539 1924 1.443872 GTACCAGAGCACCGTGTCG 60.444 63.158 0.00 0.00 0.00 4.35
1597 1982 1.141881 CTGCCTGGTAGTAGCCGTG 59.858 63.158 3.33 0.00 0.00 4.94
1598 1983 0.397254 ATCTGCCTGGTAGTAGCCGT 60.397 55.000 11.69 0.00 0.00 5.68
1601 1986 0.465705 TGCATCTGCCTGGTAGTAGC 59.534 55.000 18.39 18.39 41.18 3.58
1602 1987 1.069823 CCTGCATCTGCCTGGTAGTAG 59.930 57.143 11.69 6.76 41.18 2.57
1603 1988 1.123077 CCTGCATCTGCCTGGTAGTA 58.877 55.000 11.69 0.00 41.18 1.82
1606 1991 2.591753 GCCTGCATCTGCCTGGTA 59.408 61.111 11.27 0.00 41.18 3.25
1607 1992 4.790962 CGCCTGCATCTGCCTGGT 62.791 66.667 11.27 0.00 41.18 4.00
1645 2881 1.514228 CGTGGATGAGGTCGTCACG 60.514 63.158 0.00 0.00 38.28 4.35
1647 2883 2.348104 CCCGTGGATGAGGTCGTCA 61.348 63.158 0.00 0.00 40.38 4.35
1650 2886 3.538614 ATCCCGTGGATGAGGTCG 58.461 61.111 4.81 0.00 41.43 4.79
1657 2893 2.502492 CGAGGCTCATCCCGTGGAT 61.502 63.158 15.95 0.05 44.21 3.41
1658 2894 3.147595 CGAGGCTCATCCCGTGGA 61.148 66.667 15.95 0.00 35.55 4.02
1659 2895 3.461773 ACGAGGCTCATCCCGTGG 61.462 66.667 15.95 0.00 39.27 4.94
1661 2897 2.362503 TCACGAGGCTCATCCCGT 60.363 61.111 15.95 3.60 40.65 5.28
1662 2898 2.105128 GTCACGAGGCTCATCCCG 59.895 66.667 15.95 2.88 35.52 5.14
1683 2974 3.777910 TAGAACTTCCCGCCCGCC 61.778 66.667 0.00 0.00 0.00 6.13
1686 2977 2.510918 GCGTAGAACTTCCCGCCC 60.511 66.667 10.78 0.00 40.25 6.13
1689 2980 1.872679 GCTCGCGTAGAACTTCCCG 60.873 63.158 5.77 0.00 0.00 5.14
1690 2981 1.518792 GGCTCGCGTAGAACTTCCC 60.519 63.158 5.77 0.00 0.00 3.97
1691 2982 0.802607 CAGGCTCGCGTAGAACTTCC 60.803 60.000 5.77 0.00 0.00 3.46
1696 2987 2.181777 CAGCAGGCTCGCGTAGAA 59.818 61.111 5.77 0.00 36.85 2.10
1697 2988 3.826754 CCAGCAGGCTCGCGTAGA 61.827 66.667 5.77 0.00 36.85 2.59
1698 2989 4.880537 CCCAGCAGGCTCGCGTAG 62.881 72.222 5.77 3.35 36.85 3.51
1721 3012 0.798771 GAACTCTAGCGTCAGCACGG 60.799 60.000 0.00 0.00 46.80 4.94
1725 3016 0.863957 GCGAGAACTCTAGCGTCAGC 60.864 60.000 0.00 0.00 45.58 4.26
1726 3017 0.248296 GGCGAGAACTCTAGCGTCAG 60.248 60.000 5.85 0.00 44.07 3.51
1727 3018 1.801332 GGCGAGAACTCTAGCGTCA 59.199 57.895 5.85 0.00 44.07 4.35
1728 3019 1.297745 CGGCGAGAACTCTAGCGTC 60.298 63.158 0.00 0.00 44.07 5.19
1809 7861 1.673665 CAGCAGGTGAAGGCTCCAC 60.674 63.158 0.00 0.00 38.56 4.02
2061 8120 2.029623 TCGTAGACATACAGCCCCTTC 58.970 52.381 0.00 0.00 31.76 3.46
2265 10061 0.678684 TCCACGCTCCATGTCGTAGA 60.679 55.000 4.90 1.65 37.14 2.59
2266 10062 0.172578 TTCCACGCTCCATGTCGTAG 59.827 55.000 4.90 0.00 37.14 3.51
2267 10063 0.108992 GTTCCACGCTCCATGTCGTA 60.109 55.000 4.90 0.00 37.14 3.43
2268 10064 1.374252 GTTCCACGCTCCATGTCGT 60.374 57.895 0.00 0.00 39.79 4.34
2269 10065 0.172578 TAGTTCCACGCTCCATGTCG 59.827 55.000 0.00 0.00 0.00 4.35
2270 10066 1.204941 AGTAGTTCCACGCTCCATGTC 59.795 52.381 0.00 0.00 0.00 3.06
2271 10067 1.066858 CAGTAGTTCCACGCTCCATGT 60.067 52.381 0.00 0.00 0.00 3.21
2272 10068 1.645034 CAGTAGTTCCACGCTCCATG 58.355 55.000 0.00 0.00 0.00 3.66
2278 10074 1.982073 GCATGGCAGTAGTTCCACGC 61.982 60.000 0.00 0.00 34.32 5.34
2287 10083 2.267642 GGGTCGTGCATGGCAGTA 59.732 61.111 13.47 0.00 40.08 2.74
2311 10107 1.108727 TGGCATCATCGGGCAAATCC 61.109 55.000 0.00 0.00 37.93 3.01
2333 10129 1.664016 CGCGGGCATCAATATCAAAGC 60.664 52.381 0.00 0.00 0.00 3.51
2336 10132 2.627791 CCGCGGGCATCAATATCAA 58.372 52.632 20.10 0.00 0.00 2.57
2353 10149 0.897401 AAGGGCAGAAGCTTCAAGCC 60.897 55.000 36.18 36.18 43.77 4.35
2354 10150 0.243095 CAAGGGCAGAAGCTTCAAGC 59.757 55.000 27.57 26.99 42.84 4.01
2385 10181 8.816144 GTTTCAAGATGCAGAAAACAACATTAA 58.184 29.630 0.86 0.00 35.71 1.40
2387 10183 6.258507 GGTTTCAAGATGCAGAAAACAACATT 59.741 34.615 8.81 0.00 40.31 2.71
2389 10185 5.108517 GGTTTCAAGATGCAGAAAACAACA 58.891 37.500 8.81 0.00 40.31 3.33
2410 10207 2.951642 TCGATATTTAACGACTCCCGGT 59.048 45.455 0.00 0.00 43.93 5.28
2412 10209 6.352526 CAAAATCGATATTTAACGACTCCCG 58.647 40.000 0.00 0.00 41.17 5.14
2417 10214 7.044966 CCTTGTGCAAAATCGATATTTAACGAC 60.045 37.037 0.00 0.00 41.17 4.34
2439 10236 3.189287 GGATAAGCACTTGTGTGTCCTTG 59.811 47.826 2.61 0.00 45.44 3.61
2473 10270 2.440409 AGCTTTGCATAGTTCCACAGG 58.560 47.619 6.03 0.00 0.00 4.00
2498 10295 0.248458 CGCTTGCTGAAAACCGTTGT 60.248 50.000 0.00 0.00 0.00 3.32
2560 10452 8.753497 ACCTTTGTAAGAAGAGAAGATTTTGT 57.247 30.769 0.00 0.00 0.00 2.83
2581 10473 2.590821 ACCGTAGTACAGTGTGACCTT 58.409 47.619 5.88 0.00 0.00 3.50
2657 10549 4.009675 GTGTAACTTGGCCATCTTCATGA 58.990 43.478 6.09 0.00 30.57 3.07
2763 10655 0.459489 GTTTGTGAACCCAGCAGCAA 59.541 50.000 0.00 0.00 0.00 3.91
2807 10699 3.444805 GGTCTCGAGTGAGCGGCT 61.445 66.667 13.13 0.00 42.26 5.52
2822 10714 0.611714 ACTTTGGCGAGGATTACGGT 59.388 50.000 0.00 0.00 0.00 4.83
2837 10729 2.224670 TGGGCTGGTCGACAAATACTTT 60.225 45.455 18.91 0.00 0.00 2.66
3023 10915 3.119245 TCAAGTTACTCTGGGTGTATCGC 60.119 47.826 0.00 0.00 0.00 4.58
3024 10916 4.713824 TCAAGTTACTCTGGGTGTATCG 57.286 45.455 0.00 0.00 0.00 2.92
3025 10917 6.153000 TCTCTTCAAGTTACTCTGGGTGTATC 59.847 42.308 0.00 0.00 0.00 2.24
3035 10927 8.874744 AAGTAAACTGTCTCTTCAAGTTACTC 57.125 34.615 0.00 0.00 31.61 2.59
3079 10978 3.980698 CCCCTATCTCATTTCCTAACCCA 59.019 47.826 0.00 0.00 0.00 4.51
3100 10999 0.518195 TTACCGCGTTTTTAGCTGCC 59.482 50.000 4.92 0.00 0.00 4.85
3101 11000 1.461897 TCTTACCGCGTTTTTAGCTGC 59.538 47.619 4.92 0.00 0.00 5.25
3102 11001 3.242316 GGATCTTACCGCGTTTTTAGCTG 60.242 47.826 4.92 0.00 0.00 4.24
3123 11022 3.081554 CCTGGAACTGGTGAGGGG 58.918 66.667 0.00 0.00 42.87 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.