Multiple sequence alignment - TraesCS3B01G144100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G144100 chr3B 100.000 3544 0 0 282 3825 132654981 132658524 0.000000e+00 6545.0
1 TraesCS3B01G144100 chr3B 99.630 270 1 0 282 551 132649585 132649854 9.550000e-136 494.0
2 TraesCS3B01G144100 chr3B 98.193 166 3 0 3157 3322 599893912 599893747 1.340000e-74 291.0
3 TraesCS3B01G144100 chr3B 100.000 29 0 0 1 29 132654700 132654728 2.000000e-03 54.7
4 TraesCS3B01G144100 chr3D 94.803 2636 73 27 550 3148 83864259 83861651 0.000000e+00 4050.0
5 TraesCS3B01G144100 chr3D 90.711 506 37 7 3318 3820 83861648 83861150 0.000000e+00 665.0
6 TraesCS3B01G144100 chr3A 96.854 1367 31 5 615 1973 99996580 99995218 0.000000e+00 2276.0
7 TraesCS3B01G144100 chr3A 92.907 1156 46 14 2001 3148 99995220 99994093 0.000000e+00 1648.0
8 TraesCS3B01G144100 chr3A 78.457 311 45 11 3323 3625 99994084 99993788 2.350000e-42 183.0
9 TraesCS3B01G144100 chr2B 85.385 390 24 6 1351 1739 789616887 789617244 1.300000e-99 374.0
10 TraesCS3B01G144100 chr2B 96.610 177 5 1 3153 3329 246361991 246361816 3.740000e-75 292.0
11 TraesCS3B01G144100 chr2B 96.067 178 5 2 3154 3330 231970363 231970187 4.830000e-74 289.0
12 TraesCS3B01G144100 chr2B 95.455 176 8 0 3156 3331 161933098 161933273 8.090000e-72 281.0
13 TraesCS3B01G144100 chr2B 94.444 54 3 0 1343 1396 461896105 461896052 2.450000e-12 84.2
14 TraesCS3B01G144100 chr2B 91.379 58 5 0 1873 1930 383057345 383057288 3.170000e-11 80.5
15 TraesCS3B01G144100 chr2B 97.500 40 1 0 1369 1408 546902928 546902889 6.860000e-08 69.4
16 TraesCS3B01G144100 chr4D 96.133 181 5 2 3151 3329 306860493 306860673 1.040000e-75 294.0
17 TraesCS3B01G144100 chr2A 97.076 171 5 0 3152 3322 495825455 495825625 4.830000e-74 289.0
18 TraesCS3B01G144100 chr2A 94.444 180 10 0 3151 3330 766706994 766707173 1.050000e-70 278.0
19 TraesCS3B01G144100 chr2A 92.727 55 4 0 1873 1927 420226784 420226838 3.170000e-11 80.5
20 TraesCS3B01G144100 chrUn 95.000 180 9 0 3158 3337 79499429 79499608 2.250000e-72 283.0
21 TraesCS3B01G144100 chr4B 94.944 178 9 0 3156 3333 166778612 166778435 2.910000e-71 279.0
22 TraesCS3B01G144100 chr7A 85.019 267 25 11 297 551 269123200 269123463 1.360000e-64 257.0
23 TraesCS3B01G144100 chr7A 83.088 272 31 11 292 551 269103272 269103540 2.300000e-57 233.0
24 TraesCS3B01G144100 chr5D 79.762 252 29 15 298 534 440867717 440867473 3.060000e-36 163.0
25 TraesCS3B01G144100 chr5D 92.308 65 5 0 1369 1433 448576646 448576710 4.070000e-15 93.5
26 TraesCS3B01G144100 chr5D 95.833 48 2 0 1872 1919 81149800 81149753 1.140000e-10 78.7
27 TraesCS3B01G144100 chr7D 93.846 65 4 0 1369 1433 573007659 573007595 8.740000e-17 99.0
28 TraesCS3B01G144100 chr7D 95.918 49 2 0 1345 1393 549768546 549768594 3.170000e-11 80.5
29 TraesCS3B01G144100 chr6D 88.750 80 6 3 302 380 110170298 110170221 1.130000e-15 95.3
30 TraesCS3B01G144100 chr6B 93.443 61 4 0 1369 1429 534509682 534509622 1.460000e-14 91.6
31 TraesCS3B01G144100 chr2D 89.655 58 6 0 1873 1930 315115456 315115399 1.470000e-09 75.0
32 TraesCS3B01G144100 chr5B 82.716 81 14 0 1872 1952 89684213 89684133 5.300000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G144100 chr3B 132654700 132658524 3824 False 3299.85 6545 100.000 1 3825 2 chr3B.!!$F2 3824
1 TraesCS3B01G144100 chr3D 83861150 83864259 3109 True 2357.50 4050 92.757 550 3820 2 chr3D.!!$R1 3270
2 TraesCS3B01G144100 chr3A 99993788 99996580 2792 True 1369.00 2276 89.406 615 3625 3 chr3A.!!$R1 3010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 430 0.033699 GAGGAAGGCAGGCAGGATTT 60.034 55.0 0.0 0.0 0.00 2.17 F
479 480 0.253394 CTTCCCCTCCCCCTCTCTTT 60.253 60.0 0.0 0.0 0.00 2.52 F
645 646 0.396435 TCCTACTGCACCACCTTGTG 59.604 55.0 0.0 0.0 39.29 3.33 F
1043 1065 0.683504 ACCCTAGACTACACGCCCAG 60.684 60.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1417 1440 0.738975 TCAGCGGTATGAACTCCTCG 59.261 55.000 0.00 0.0 0.00 4.63 R
1954 1977 1.328279 ACATGAGGACGTCTGTGTGA 58.672 50.000 16.46 0.0 0.00 3.58 R
2114 2139 1.579698 CATCCACCTTCATGAGCTCG 58.420 55.000 9.64 0.0 0.00 5.03 R
2834 2871 1.634225 GCGCGCGCTACTTAATTGA 59.366 52.632 44.38 0.0 38.26 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.834732 AGTTGCATCGACACTACCC 57.165 52.632 0.00 0.00 0.00 3.69
19 20 1.267121 AGTTGCATCGACACTACCCT 58.733 50.000 0.00 0.00 0.00 4.34
20 21 1.066858 AGTTGCATCGACACTACCCTG 60.067 52.381 0.00 0.00 0.00 4.45
21 22 1.067142 GTTGCATCGACACTACCCTGA 60.067 52.381 0.00 0.00 0.00 3.86
22 23 1.262417 TGCATCGACACTACCCTGAA 58.738 50.000 0.00 0.00 0.00 3.02
23 24 1.204704 TGCATCGACACTACCCTGAAG 59.795 52.381 0.00 0.00 0.00 3.02
24 25 1.927895 CATCGACACTACCCTGAAGC 58.072 55.000 0.00 0.00 0.00 3.86
25 26 1.478510 CATCGACACTACCCTGAAGCT 59.521 52.381 0.00 0.00 0.00 3.74
26 27 1.174783 TCGACACTACCCTGAAGCTC 58.825 55.000 0.00 0.00 0.00 4.09
27 28 0.173708 CGACACTACCCTGAAGCTCC 59.826 60.000 0.00 0.00 0.00 4.70
28 29 1.267121 GACACTACCCTGAAGCTCCA 58.733 55.000 0.00 0.00 0.00 3.86
300 301 1.950828 CCTGCCACTGCTATGAAGAG 58.049 55.000 0.00 0.00 38.71 2.85
301 302 1.297664 CTGCCACTGCTATGAAGAGC 58.702 55.000 0.00 0.00 43.16 4.09
302 303 0.107508 TGCCACTGCTATGAAGAGCC 60.108 55.000 0.00 0.00 42.11 4.70
303 304 0.817229 GCCACTGCTATGAAGAGCCC 60.817 60.000 0.00 0.00 42.11 5.19
304 305 0.543277 CCACTGCTATGAAGAGCCCA 59.457 55.000 0.00 0.00 42.11 5.36
305 306 1.474677 CCACTGCTATGAAGAGCCCAG 60.475 57.143 0.00 0.00 42.11 4.45
306 307 0.179936 ACTGCTATGAAGAGCCCAGC 59.820 55.000 0.00 0.00 42.11 4.85
307 308 0.879400 CTGCTATGAAGAGCCCAGCG 60.879 60.000 0.00 0.00 42.11 5.18
308 309 1.596477 GCTATGAAGAGCCCAGCGG 60.596 63.158 0.00 0.00 36.38 5.52
325 326 4.779733 GGAGACGAGGCCCAGGGA 62.780 72.222 10.89 0.00 0.00 4.20
326 327 3.462678 GAGACGAGGCCCAGGGAC 61.463 72.222 10.89 6.38 0.00 4.46
334 335 4.748144 GCCCAGGGACCAGGCAAG 62.748 72.222 10.89 0.00 46.34 4.01
335 336 2.935481 CCCAGGGACCAGGCAAGA 60.935 66.667 0.00 0.00 0.00 3.02
336 337 2.673523 CCAGGGACCAGGCAAGAG 59.326 66.667 0.00 0.00 0.00 2.85
337 338 2.673523 CAGGGACCAGGCAAGAGG 59.326 66.667 0.00 0.00 0.00 3.69
338 339 2.612115 AGGGACCAGGCAAGAGGG 60.612 66.667 0.00 0.00 0.00 4.30
339 340 2.936032 GGGACCAGGCAAGAGGGT 60.936 66.667 0.00 0.00 37.70 4.34
340 341 2.352805 GGACCAGGCAAGAGGGTG 59.647 66.667 0.00 0.00 34.39 4.61
341 342 2.224159 GGACCAGGCAAGAGGGTGA 61.224 63.158 0.00 0.00 34.39 4.02
342 343 1.298014 GACCAGGCAAGAGGGTGAG 59.702 63.158 0.00 0.00 34.39 3.51
343 344 1.152030 ACCAGGCAAGAGGGTGAGA 60.152 57.895 0.00 0.00 32.60 3.27
344 345 0.768221 ACCAGGCAAGAGGGTGAGAA 60.768 55.000 0.00 0.00 32.60 2.87
345 346 0.035630 CCAGGCAAGAGGGTGAGAAG 60.036 60.000 0.00 0.00 0.00 2.85
346 347 0.035630 CAGGCAAGAGGGTGAGAAGG 60.036 60.000 0.00 0.00 0.00 3.46
347 348 1.377856 GGCAAGAGGGTGAGAAGGC 60.378 63.158 0.00 0.00 0.00 4.35
348 349 1.377856 GCAAGAGGGTGAGAAGGCC 60.378 63.158 0.00 0.00 0.00 5.19
349 350 1.301293 CAAGAGGGTGAGAAGGCCC 59.699 63.158 0.00 0.00 45.16 5.80
353 354 4.785453 GGGTGAGAAGGCCCAGCG 62.785 72.222 0.00 0.00 44.23 5.18
354 355 3.706373 GGTGAGAAGGCCCAGCGA 61.706 66.667 0.00 0.00 0.00 4.93
355 356 2.125350 GTGAGAAGGCCCAGCGAG 60.125 66.667 0.00 0.00 0.00 5.03
356 357 4.087892 TGAGAAGGCCCAGCGAGC 62.088 66.667 0.00 0.00 0.00 5.03
370 371 4.840005 GAGCGCTACCCAGCCCAC 62.840 72.222 11.50 0.00 45.64 4.61
372 373 4.715523 GCGCTACCCAGCCCACAA 62.716 66.667 0.00 0.00 45.64 3.33
373 374 2.436646 CGCTACCCAGCCCACAAG 60.437 66.667 0.00 0.00 45.64 3.16
374 375 2.757077 GCTACCCAGCCCACAAGT 59.243 61.111 0.00 0.00 42.37 3.16
375 376 1.675641 GCTACCCAGCCCACAAGTG 60.676 63.158 0.00 0.00 42.37 3.16
396 397 3.919223 GGTGACCTAGGCTACTTATCG 57.081 52.381 9.30 0.00 0.00 2.92
397 398 2.557490 GGTGACCTAGGCTACTTATCGG 59.443 54.545 9.30 0.00 0.00 4.18
398 399 2.557490 GTGACCTAGGCTACTTATCGGG 59.443 54.545 9.30 0.00 0.00 5.14
399 400 2.444388 TGACCTAGGCTACTTATCGGGA 59.556 50.000 9.30 0.00 0.00 5.14
400 401 3.083293 GACCTAGGCTACTTATCGGGAG 58.917 54.545 9.30 0.00 0.00 4.30
401 402 2.225066 ACCTAGGCTACTTATCGGGAGG 60.225 54.545 9.30 0.00 0.00 4.30
402 403 2.041350 CCTAGGCTACTTATCGGGAGGA 59.959 54.545 0.00 0.00 0.00 3.71
403 404 2.296073 AGGCTACTTATCGGGAGGAG 57.704 55.000 0.00 0.00 0.00 3.69
404 405 1.499870 AGGCTACTTATCGGGAGGAGT 59.500 52.381 0.00 0.00 0.00 3.85
405 406 1.887854 GGCTACTTATCGGGAGGAGTC 59.112 57.143 0.00 0.00 0.00 3.36
406 407 2.489437 GGCTACTTATCGGGAGGAGTCT 60.489 54.545 0.00 0.00 26.84 3.24
407 408 2.815503 GCTACTTATCGGGAGGAGTCTC 59.184 54.545 0.00 0.00 39.25 3.36
408 409 3.497227 GCTACTTATCGGGAGGAGTCTCT 60.497 52.174 0.00 0.00 39.86 3.10
409 410 2.938838 ACTTATCGGGAGGAGTCTCTG 58.061 52.381 0.00 0.00 39.86 3.35
410 411 2.235016 CTTATCGGGAGGAGTCTCTGG 58.765 57.143 0.00 0.00 39.86 3.86
411 412 1.519498 TATCGGGAGGAGTCTCTGGA 58.481 55.000 0.00 0.00 39.86 3.86
412 413 0.184933 ATCGGGAGGAGTCTCTGGAG 59.815 60.000 0.00 0.00 39.86 3.86
413 414 1.454847 CGGGAGGAGTCTCTGGAGG 60.455 68.421 0.00 0.00 39.86 4.30
414 415 1.927569 CGGGAGGAGTCTCTGGAGGA 61.928 65.000 0.00 0.00 39.86 3.71
415 416 0.336737 GGGAGGAGTCTCTGGAGGAA 59.663 60.000 0.00 0.00 39.86 3.36
416 417 1.687996 GGGAGGAGTCTCTGGAGGAAG 60.688 61.905 0.00 0.00 39.86 3.46
417 418 1.687996 GGAGGAGTCTCTGGAGGAAGG 60.688 61.905 0.00 0.00 39.86 3.46
418 419 0.325203 AGGAGTCTCTGGAGGAAGGC 60.325 60.000 0.00 0.00 0.00 4.35
419 420 0.616111 GGAGTCTCTGGAGGAAGGCA 60.616 60.000 0.00 0.00 0.00 4.75
420 421 0.823460 GAGTCTCTGGAGGAAGGCAG 59.177 60.000 0.00 0.00 0.00 4.85
421 422 0.617249 AGTCTCTGGAGGAAGGCAGG 60.617 60.000 0.00 0.00 0.00 4.85
422 423 1.992277 TCTCTGGAGGAAGGCAGGC 60.992 63.158 0.00 0.00 0.00 4.85
423 424 2.203983 TCTGGAGGAAGGCAGGCA 60.204 61.111 0.00 0.00 0.00 4.75
424 425 2.254737 CTCTGGAGGAAGGCAGGCAG 62.255 65.000 0.00 0.00 0.00 4.85
425 426 3.333219 TGGAGGAAGGCAGGCAGG 61.333 66.667 0.00 0.00 0.00 4.85
426 427 3.011517 GGAGGAAGGCAGGCAGGA 61.012 66.667 0.00 0.00 0.00 3.86
427 428 2.381941 GGAGGAAGGCAGGCAGGAT 61.382 63.158 0.00 0.00 0.00 3.24
428 429 1.611965 GAGGAAGGCAGGCAGGATT 59.388 57.895 0.00 0.00 0.00 3.01
429 430 0.033699 GAGGAAGGCAGGCAGGATTT 60.034 55.000 0.00 0.00 0.00 2.17
430 431 1.212935 GAGGAAGGCAGGCAGGATTTA 59.787 52.381 0.00 0.00 0.00 1.40
431 432 1.213926 AGGAAGGCAGGCAGGATTTAG 59.786 52.381 0.00 0.00 0.00 1.85
432 433 1.064389 GGAAGGCAGGCAGGATTTAGT 60.064 52.381 0.00 0.00 0.00 2.24
433 434 2.621668 GGAAGGCAGGCAGGATTTAGTT 60.622 50.000 0.00 0.00 0.00 2.24
434 435 2.134789 AGGCAGGCAGGATTTAGTTG 57.865 50.000 0.00 0.00 0.00 3.16
435 436 1.106285 GGCAGGCAGGATTTAGTTGG 58.894 55.000 0.00 0.00 0.00 3.77
436 437 0.457443 GCAGGCAGGATTTAGTTGGC 59.543 55.000 0.00 0.00 37.63 4.52
437 438 1.838112 CAGGCAGGATTTAGTTGGCA 58.162 50.000 0.22 0.00 39.59 4.92
438 439 2.170166 CAGGCAGGATTTAGTTGGCAA 58.830 47.619 0.00 0.00 39.59 4.52
439 440 2.762327 CAGGCAGGATTTAGTTGGCAAT 59.238 45.455 1.92 0.00 39.59 3.56
440 441 3.196254 CAGGCAGGATTTAGTTGGCAATT 59.804 43.478 1.92 0.69 39.59 2.32
441 442 3.448660 AGGCAGGATTTAGTTGGCAATTC 59.551 43.478 1.92 0.00 39.59 2.17
442 443 3.448660 GGCAGGATTTAGTTGGCAATTCT 59.551 43.478 1.92 0.00 37.35 2.40
443 444 4.081476 GGCAGGATTTAGTTGGCAATTCTT 60.081 41.667 1.92 0.00 37.35 2.52
444 445 5.105063 GCAGGATTTAGTTGGCAATTCTTC 58.895 41.667 1.92 0.00 0.00 2.87
445 446 5.335127 CAGGATTTAGTTGGCAATTCTTCG 58.665 41.667 1.92 0.00 0.00 3.79
446 447 4.399303 AGGATTTAGTTGGCAATTCTTCGG 59.601 41.667 1.92 0.00 0.00 4.30
447 448 3.569250 TTTAGTTGGCAATTCTTCGGC 57.431 42.857 1.92 0.00 0.00 5.54
448 449 1.083489 TAGTTGGCAATTCTTCGGCG 58.917 50.000 1.92 0.00 0.00 6.46
449 450 1.154035 GTTGGCAATTCTTCGGCGG 60.154 57.895 7.21 0.00 0.00 6.13
450 451 2.988688 TTGGCAATTCTTCGGCGGC 61.989 57.895 7.21 0.00 0.00 6.53
451 452 4.536687 GGCAATTCTTCGGCGGCG 62.537 66.667 27.15 27.15 0.00 6.46
452 453 4.536687 GCAATTCTTCGGCGGCGG 62.537 66.667 31.73 16.54 0.00 6.13
453 454 4.536687 CAATTCTTCGGCGGCGGC 62.537 66.667 31.73 24.75 38.90 6.53
468 469 4.491409 GGCGGCTTCCTTCCCCTC 62.491 72.222 0.00 0.00 0.00 4.30
469 470 4.491409 GCGGCTTCCTTCCCCTCC 62.491 72.222 0.00 0.00 0.00 4.30
470 471 3.798511 CGGCTTCCTTCCCCTCCC 61.799 72.222 0.00 0.00 0.00 4.30
471 472 3.421386 GGCTTCCTTCCCCTCCCC 61.421 72.222 0.00 0.00 0.00 4.81
472 473 3.421386 GCTTCCTTCCCCTCCCCC 61.421 72.222 0.00 0.00 0.00 5.40
473 474 2.461637 CTTCCTTCCCCTCCCCCT 59.538 66.667 0.00 0.00 0.00 4.79
474 475 1.694525 CTTCCTTCCCCTCCCCCTC 60.695 68.421 0.00 0.00 0.00 4.30
475 476 2.191846 TTCCTTCCCCTCCCCCTCT 61.192 63.158 0.00 0.00 0.00 3.69
476 477 2.040359 CCTTCCCCTCCCCCTCTC 60.040 72.222 0.00 0.00 0.00 3.20
477 478 2.652113 CCTTCCCCTCCCCCTCTCT 61.652 68.421 0.00 0.00 0.00 3.10
478 479 1.398234 CTTCCCCTCCCCCTCTCTT 59.602 63.158 0.00 0.00 0.00 2.85
479 480 0.253394 CTTCCCCTCCCCCTCTCTTT 60.253 60.000 0.00 0.00 0.00 2.52
480 481 1.009675 CTTCCCCTCCCCCTCTCTTTA 59.990 57.143 0.00 0.00 0.00 1.85
481 482 0.642710 TCCCCTCCCCCTCTCTTTAG 59.357 60.000 0.00 0.00 0.00 1.85
482 483 0.642710 CCCCTCCCCCTCTCTTTAGA 59.357 60.000 0.00 0.00 0.00 2.10
483 484 1.009675 CCCCTCCCCCTCTCTTTAGAA 59.990 57.143 0.00 0.00 0.00 2.10
484 485 2.120312 CCCTCCCCCTCTCTTTAGAAC 58.880 57.143 0.00 0.00 0.00 3.01
485 486 2.120312 CCTCCCCCTCTCTTTAGAACC 58.880 57.143 0.00 0.00 0.00 3.62
486 487 2.120312 CTCCCCCTCTCTTTAGAACCC 58.880 57.143 0.00 0.00 0.00 4.11
487 488 1.728701 TCCCCCTCTCTTTAGAACCCT 59.271 52.381 0.00 0.00 0.00 4.34
488 489 2.937956 TCCCCCTCTCTTTAGAACCCTA 59.062 50.000 0.00 0.00 0.00 3.53
489 490 3.052033 TCCCCCTCTCTTTAGAACCCTAG 60.052 52.174 0.00 0.00 0.00 3.02
490 491 3.310731 CCCCCTCTCTTTAGAACCCTAGT 60.311 52.174 0.00 0.00 0.00 2.57
491 492 4.363573 CCCCTCTCTTTAGAACCCTAGTT 58.636 47.826 0.00 0.00 39.54 2.24
492 493 5.526434 CCCCTCTCTTTAGAACCCTAGTTA 58.474 45.833 0.00 0.00 35.94 2.24
493 494 5.363292 CCCCTCTCTTTAGAACCCTAGTTAC 59.637 48.000 0.00 0.00 35.94 2.50
494 495 6.196434 CCCTCTCTTTAGAACCCTAGTTACT 58.804 44.000 0.00 0.00 35.94 2.24
495 496 6.668718 CCCTCTCTTTAGAACCCTAGTTACTT 59.331 42.308 0.00 0.00 35.94 2.24
496 497 7.147863 CCCTCTCTTTAGAACCCTAGTTACTTC 60.148 44.444 0.00 0.00 35.94 3.01
497 498 7.396623 CCTCTCTTTAGAACCCTAGTTACTTCA 59.603 40.741 0.00 0.00 35.94 3.02
498 499 8.350852 TCTCTTTAGAACCCTAGTTACTTCAG 57.649 38.462 0.00 0.00 35.94 3.02
499 500 8.168725 TCTCTTTAGAACCCTAGTTACTTCAGA 58.831 37.037 0.00 0.00 35.94 3.27
500 501 8.896722 TCTTTAGAACCCTAGTTACTTCAGAT 57.103 34.615 0.00 0.00 35.94 2.90
501 502 9.322769 TCTTTAGAACCCTAGTTACTTCAGATT 57.677 33.333 0.00 0.00 35.94 2.40
502 503 9.945904 CTTTAGAACCCTAGTTACTTCAGATTT 57.054 33.333 0.00 0.00 35.94 2.17
503 504 9.720769 TTTAGAACCCTAGTTACTTCAGATTTG 57.279 33.333 0.00 0.00 35.94 2.32
504 505 6.712276 AGAACCCTAGTTACTTCAGATTTGG 58.288 40.000 0.00 0.00 35.94 3.28
505 506 6.272558 AGAACCCTAGTTACTTCAGATTTGGT 59.727 38.462 0.00 0.00 35.94 3.67
506 507 5.805728 ACCCTAGTTACTTCAGATTTGGTG 58.194 41.667 0.00 0.00 0.00 4.17
507 508 5.309806 ACCCTAGTTACTTCAGATTTGGTGT 59.690 40.000 0.00 0.00 0.00 4.16
508 509 6.499350 ACCCTAGTTACTTCAGATTTGGTGTA 59.501 38.462 0.00 0.00 0.00 2.90
509 510 7.042335 CCCTAGTTACTTCAGATTTGGTGTAG 58.958 42.308 0.00 0.00 0.00 2.74
510 511 7.310485 CCCTAGTTACTTCAGATTTGGTGTAGT 60.310 40.741 0.00 0.00 0.00 2.73
511 512 8.095169 CCTAGTTACTTCAGATTTGGTGTAGTT 58.905 37.037 0.00 0.00 0.00 2.24
512 513 7.964604 AGTTACTTCAGATTTGGTGTAGTTC 57.035 36.000 0.00 0.00 0.00 3.01
513 514 6.935208 AGTTACTTCAGATTTGGTGTAGTTCC 59.065 38.462 0.00 0.00 0.00 3.62
514 515 4.315803 ACTTCAGATTTGGTGTAGTTCCG 58.684 43.478 0.00 0.00 0.00 4.30
515 516 4.039973 ACTTCAGATTTGGTGTAGTTCCGA 59.960 41.667 0.00 0.00 0.00 4.55
516 517 4.188247 TCAGATTTGGTGTAGTTCCGAG 57.812 45.455 0.00 0.00 0.00 4.63
517 518 3.830178 TCAGATTTGGTGTAGTTCCGAGA 59.170 43.478 0.00 0.00 0.00 4.04
518 519 3.927142 CAGATTTGGTGTAGTTCCGAGAC 59.073 47.826 0.00 0.00 0.00 3.36
519 520 3.576982 AGATTTGGTGTAGTTCCGAGACA 59.423 43.478 0.00 0.00 0.00 3.41
520 521 3.823281 TTTGGTGTAGTTCCGAGACAA 57.177 42.857 0.00 0.00 0.00 3.18
521 522 4.345859 TTTGGTGTAGTTCCGAGACAAT 57.654 40.909 0.00 0.00 0.00 2.71
522 523 3.587797 TGGTGTAGTTCCGAGACAATC 57.412 47.619 0.00 0.00 0.00 2.67
523 524 3.162666 TGGTGTAGTTCCGAGACAATCT 58.837 45.455 0.00 0.00 0.00 2.40
524 525 3.576982 TGGTGTAGTTCCGAGACAATCTT 59.423 43.478 0.00 0.00 0.00 2.40
525 526 3.927142 GGTGTAGTTCCGAGACAATCTTG 59.073 47.826 0.00 0.00 0.00 3.02
526 527 4.557205 GTGTAGTTCCGAGACAATCTTGT 58.443 43.478 0.00 0.00 45.65 3.16
527 528 5.336213 GGTGTAGTTCCGAGACAATCTTGTA 60.336 44.000 0.00 0.00 42.43 2.41
528 529 6.331061 GTGTAGTTCCGAGACAATCTTGTAT 58.669 40.000 0.00 0.00 42.43 2.29
529 530 6.812160 GTGTAGTTCCGAGACAATCTTGTATT 59.188 38.462 0.00 0.00 42.43 1.89
530 531 7.972277 GTGTAGTTCCGAGACAATCTTGTATTA 59.028 37.037 0.00 0.00 42.43 0.98
531 532 8.188799 TGTAGTTCCGAGACAATCTTGTATTAG 58.811 37.037 0.00 0.00 42.43 1.73
532 533 7.406031 AGTTCCGAGACAATCTTGTATTAGA 57.594 36.000 0.00 0.00 42.43 2.10
533 534 8.012957 AGTTCCGAGACAATCTTGTATTAGAT 57.987 34.615 0.00 0.00 42.43 1.98
534 535 8.138712 AGTTCCGAGACAATCTTGTATTAGATC 58.861 37.037 0.00 0.00 42.43 2.75
535 536 6.982852 TCCGAGACAATCTTGTATTAGATCC 58.017 40.000 0.00 0.00 42.43 3.36
536 537 6.549736 TCCGAGACAATCTTGTATTAGATCCA 59.450 38.462 0.00 0.00 42.43 3.41
537 538 6.642950 CCGAGACAATCTTGTATTAGATCCAC 59.357 42.308 0.00 0.00 42.43 4.02
538 539 7.429633 CGAGACAATCTTGTATTAGATCCACT 58.570 38.462 0.00 0.00 42.43 4.00
539 540 7.380870 CGAGACAATCTTGTATTAGATCCACTG 59.619 40.741 0.00 0.00 42.43 3.66
540 541 8.311395 AGACAATCTTGTATTAGATCCACTGA 57.689 34.615 0.00 0.00 42.43 3.41
541 542 8.420222 AGACAATCTTGTATTAGATCCACTGAG 58.580 37.037 0.00 0.00 42.43 3.35
542 543 8.311395 ACAATCTTGTATTAGATCCACTGAGA 57.689 34.615 0.00 0.00 40.16 3.27
543 544 8.420222 ACAATCTTGTATTAGATCCACTGAGAG 58.580 37.037 0.00 0.00 40.16 3.20
544 545 6.398234 TCTTGTATTAGATCCACTGAGAGC 57.602 41.667 0.00 0.00 0.00 4.09
545 546 4.837896 TGTATTAGATCCACTGAGAGCG 57.162 45.455 0.00 0.00 0.00 5.03
546 547 4.207955 TGTATTAGATCCACTGAGAGCGT 58.792 43.478 0.00 0.00 0.00 5.07
547 548 5.374071 TGTATTAGATCCACTGAGAGCGTA 58.626 41.667 0.00 0.00 0.00 4.42
548 549 5.826208 TGTATTAGATCCACTGAGAGCGTAA 59.174 40.000 0.00 0.00 0.00 3.18
645 646 0.396435 TCCTACTGCACCACCTTGTG 59.604 55.000 0.00 0.00 39.29 3.33
760 763 2.847449 TCCCTCTAGTCTAGTCTGCAGT 59.153 50.000 14.67 0.00 0.00 4.40
1038 1060 3.614092 TGACCTAACCCTAGACTACACG 58.386 50.000 0.00 0.00 0.00 4.49
1043 1065 0.683504 ACCCTAGACTACACGCCCAG 60.684 60.000 0.00 0.00 0.00 4.45
1825 1848 4.295119 GGTGCACCACCGACGTCT 62.295 66.667 31.23 0.00 44.95 4.18
1954 1977 2.513897 GGCGGCGCTCAAGGTATT 60.514 61.111 32.30 0.00 0.00 1.89
1968 1993 2.526432 AGGTATTCACACAGACGTCCT 58.474 47.619 13.01 0.00 0.00 3.85
1974 1999 2.510613 TCACACAGACGTCCTCATGTA 58.489 47.619 13.01 0.00 0.00 2.29
2022 2047 4.707030 TGCATCAAATTAACCTGCTGAG 57.293 40.909 0.00 0.00 34.02 3.35
2043 2068 5.405269 TGAGTCTGAATGAATTACGTGTGTG 59.595 40.000 0.00 0.00 0.00 3.82
2066 2091 6.151817 GTGCCCAAGACAAATTCTAAATCTCT 59.848 38.462 0.00 0.00 32.51 3.10
2114 2139 4.162690 ACCCCGAAGCAGATCCGC 62.163 66.667 0.00 0.00 0.00 5.54
2257 2289 7.128976 GCTGCTGCTTTAATTATGAGTAGAAC 58.871 38.462 8.53 3.58 36.03 3.01
2294 2326 6.940831 TTATATGAACACATGACACATGGG 57.059 37.500 11.69 11.69 0.00 4.00
2416 2453 2.281761 CCGCAGCTGGTGGTTCTT 60.282 61.111 17.12 0.00 42.49 2.52
2476 2513 2.351336 CTGGACCGACCGCCATCTAC 62.351 65.000 0.00 0.00 42.61 2.59
2636 2673 4.063967 CACCTACGCCACCGCAGA 62.064 66.667 0.00 0.00 38.22 4.26
2834 2871 8.204836 AGCAGATCAACTACTAATTAAACGGAT 58.795 33.333 0.00 0.00 0.00 4.18
2835 2872 8.488764 GCAGATCAACTACTAATTAAACGGATC 58.511 37.037 0.00 0.00 0.00 3.36
2851 2888 1.136611 GGATCAATTAAGTAGCGCGCG 60.137 52.381 28.44 28.44 0.00 6.86
2863 2900 3.864686 CGCGCGCACCAATTAGCT 61.865 61.111 32.61 0.00 0.00 3.32
2864 2901 2.521771 CGCGCGCACCAATTAGCTA 61.522 57.895 32.61 0.00 0.00 3.32
2865 2902 1.276844 GCGCGCACCAATTAGCTAG 59.723 57.895 29.10 0.00 0.00 3.42
3026 3077 2.325583 TACGGATGGATTTGTGAGGC 57.674 50.000 0.00 0.00 0.00 4.70
3148 3201 3.243737 GCTTTGTAAACTTGGTTGGAGGG 60.244 47.826 0.00 0.00 0.00 4.30
3149 3202 2.668144 TGTAAACTTGGTTGGAGGGG 57.332 50.000 0.00 0.00 0.00 4.79
3150 3203 2.136863 TGTAAACTTGGTTGGAGGGGA 58.863 47.619 0.00 0.00 0.00 4.81
3152 3205 2.858787 AAACTTGGTTGGAGGGGAAA 57.141 45.000 0.00 0.00 0.00 3.13
3154 3207 3.344535 AACTTGGTTGGAGGGGAAAAT 57.655 42.857 0.00 0.00 0.00 1.82
3155 3208 4.479156 AACTTGGTTGGAGGGGAAAATA 57.521 40.909 0.00 0.00 0.00 1.40
3156 3209 4.479156 ACTTGGTTGGAGGGGAAAATAA 57.521 40.909 0.00 0.00 0.00 1.40
3157 3210 5.023514 ACTTGGTTGGAGGGGAAAATAAT 57.976 39.130 0.00 0.00 0.00 1.28
3158 3211 6.160483 ACTTGGTTGGAGGGGAAAATAATA 57.840 37.500 0.00 0.00 0.00 0.98
3159 3212 5.955959 ACTTGGTTGGAGGGGAAAATAATAC 59.044 40.000 0.00 0.00 0.00 1.89
3160 3213 5.806955 TGGTTGGAGGGGAAAATAATACT 57.193 39.130 0.00 0.00 0.00 2.12
3161 3214 5.762279 TGGTTGGAGGGGAAAATAATACTC 58.238 41.667 0.00 0.00 0.00 2.59
3162 3215 5.138276 GGTTGGAGGGGAAAATAATACTCC 58.862 45.833 0.00 0.00 43.63 3.85
3168 3221 4.701651 GGGAAAATAATACTCCCTCCGT 57.298 45.455 0.00 0.00 44.81 4.69
3169 3222 5.045012 GGGAAAATAATACTCCCTCCGTT 57.955 43.478 0.00 0.00 44.81 4.44
3170 3223 5.061853 GGGAAAATAATACTCCCTCCGTTC 58.938 45.833 0.00 0.00 44.81 3.95
3171 3224 5.061853 GGAAAATAATACTCCCTCCGTTCC 58.938 45.833 0.00 0.00 0.00 3.62
3172 3225 5.163227 GGAAAATAATACTCCCTCCGTTCCT 60.163 44.000 0.00 0.00 0.00 3.36
3173 3226 6.042437 GGAAAATAATACTCCCTCCGTTCCTA 59.958 42.308 0.00 0.00 0.00 2.94
3174 3227 7.419403 GGAAAATAATACTCCCTCCGTTCCTAA 60.419 40.741 0.00 0.00 0.00 2.69
3175 3228 7.441903 AAATAATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
3176 3229 7.628501 AATAATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
3177 3230 8.731591 AATAATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
3178 3231 8.731591 ATAATACTCCCTCCGTTCCTAAATAA 57.268 34.615 0.00 0.00 0.00 1.40
3179 3232 7.628501 AATACTCCCTCCGTTCCTAAATAAT 57.371 36.000 0.00 0.00 0.00 1.28
3180 3233 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
3181 3234 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
3182 3235 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
3183 3236 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
3184 3237 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
3185 3238 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
3186 3239 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
3187 3240 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
3188 3241 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
3189 3242 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
3190 3243 9.947433 TCCGTTCCTAAATAATTGTCTTTCTAA 57.053 29.630 0.00 0.00 0.00 2.10
3205 3258 9.787532 TTGTCTTTCTAAAGATTTCAACAAGTG 57.212 29.630 8.31 0.00 45.83 3.16
3206 3259 9.173021 TGTCTTTCTAAAGATTTCAACAAGTGA 57.827 29.630 8.31 0.00 45.83 3.41
3207 3260 9.439537 GTCTTTCTAAAGATTTCAACAAGTGAC 57.560 33.333 8.31 0.00 45.83 3.67
3208 3261 9.396022 TCTTTCTAAAGATTTCAACAAGTGACT 57.604 29.630 1.00 0.00 39.95 3.41
3211 3264 9.607988 TTCTAAAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
3212 3265 9.778741 TCTAAAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
3215 3268 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
3216 3269 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3217 3270 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3218 3271 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3219 3272 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3220 3273 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3221 3274 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3222 3275 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3223 3276 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3224 3277 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3225 3278 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3226 3279 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3227 3280 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3228 3281 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3229 3282 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3230 3283 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3231 3284 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3232 3285 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3233 3286 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3234 3287 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3235 3288 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3236 3289 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3237 3290 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3238 3291 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3280 3333 9.653287 CATACATCCGTATGTTATAGTCCATTT 57.347 33.333 0.00 0.00 46.70 2.32
3281 3334 7.962964 ACATCCGTATGTTATAGTCCATTTG 57.037 36.000 0.00 0.00 44.07 2.32
3282 3335 7.732025 ACATCCGTATGTTATAGTCCATTTGA 58.268 34.615 0.00 0.00 44.07 2.69
3283 3336 7.872993 ACATCCGTATGTTATAGTCCATTTGAG 59.127 37.037 0.00 0.00 44.07 3.02
3284 3337 7.591421 TCCGTATGTTATAGTCCATTTGAGA 57.409 36.000 0.00 0.00 0.00 3.27
3285 3338 8.190326 TCCGTATGTTATAGTCCATTTGAGAT 57.810 34.615 0.00 0.00 0.00 2.75
3286 3339 8.088365 TCCGTATGTTATAGTCCATTTGAGATG 58.912 37.037 0.00 0.00 0.00 2.90
3287 3340 7.331934 CCGTATGTTATAGTCCATTTGAGATGG 59.668 40.741 0.00 0.00 40.48 3.51
3288 3341 7.148573 CGTATGTTATAGTCCATTTGAGATGGC 60.149 40.741 0.00 0.00 39.01 4.40
3289 3342 6.252599 TGTTATAGTCCATTTGAGATGGCT 57.747 37.500 0.00 1.24 39.01 4.75
3290 3343 7.373617 TGTTATAGTCCATTTGAGATGGCTA 57.626 36.000 0.00 3.36 39.01 3.93
3291 3344 7.445121 TGTTATAGTCCATTTGAGATGGCTAG 58.555 38.462 0.00 0.00 39.01 3.42
3292 3345 7.290014 TGTTATAGTCCATTTGAGATGGCTAGA 59.710 37.037 0.00 0.00 39.01 2.43
3293 3346 6.753913 ATAGTCCATTTGAGATGGCTAGAA 57.246 37.500 0.00 0.00 39.01 2.10
3294 3347 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
3295 3348 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
3296 3349 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
3297 3350 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
3299 3352 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
3300 3353 6.404074 CCATTTGAGATGGCTAGAAAGACAAC 60.404 42.308 0.00 0.00 46.32 3.32
3301 3354 5.489792 TTGAGATGGCTAGAAAGACAACT 57.510 39.130 0.00 0.00 46.32 3.16
3302 3355 6.605471 TTGAGATGGCTAGAAAGACAACTA 57.395 37.500 0.00 0.00 46.32 2.24
3303 3356 6.798427 TGAGATGGCTAGAAAGACAACTAT 57.202 37.500 0.00 0.00 46.32 2.12
3304 3357 7.187824 TGAGATGGCTAGAAAGACAACTATT 57.812 36.000 0.00 0.00 46.32 1.73
3305 3358 7.624549 TGAGATGGCTAGAAAGACAACTATTT 58.375 34.615 0.00 0.00 46.32 1.40
3306 3359 7.550551 TGAGATGGCTAGAAAGACAACTATTTG 59.449 37.037 0.00 0.00 46.32 2.32
3307 3360 6.825721 AGATGGCTAGAAAGACAACTATTTGG 59.174 38.462 0.00 0.00 46.32 3.28
3308 3361 5.253330 TGGCTAGAAAGACAACTATTTGGG 58.747 41.667 0.00 0.00 38.01 4.12
3309 3362 5.013704 TGGCTAGAAAGACAACTATTTGGGA 59.986 40.000 0.00 0.00 38.01 4.37
3310 3363 5.944007 GGCTAGAAAGACAACTATTTGGGAA 59.056 40.000 0.00 0.00 37.00 3.97
3311 3364 6.127980 GGCTAGAAAGACAACTATTTGGGAAC 60.128 42.308 0.00 0.00 37.00 3.62
3312 3365 5.941948 AGAAAGACAACTATTTGGGAACG 57.058 39.130 0.00 0.00 37.00 3.95
3313 3366 4.760204 AGAAAGACAACTATTTGGGAACGG 59.240 41.667 0.00 0.00 37.00 4.44
3314 3367 4.360951 AAGACAACTATTTGGGAACGGA 57.639 40.909 0.00 0.00 37.00 4.69
3315 3368 3.939066 AGACAACTATTTGGGAACGGAG 58.061 45.455 0.00 0.00 37.00 4.63
3316 3369 3.007635 GACAACTATTTGGGAACGGAGG 58.992 50.000 0.00 0.00 37.00 4.30
3317 3370 2.290705 ACAACTATTTGGGAACGGAGGG 60.291 50.000 0.00 0.00 37.00 4.30
3318 3371 1.961133 ACTATTTGGGAACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
3319 3372 1.838077 ACTATTTGGGAACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
3328 3381 5.218179 TGGGAACGGAGGGAGTAATTATTA 58.782 41.667 0.00 0.00 0.00 0.98
3329 3382 5.666718 TGGGAACGGAGGGAGTAATTATTAA 59.333 40.000 0.00 0.00 0.00 1.40
3336 3389 7.178805 ACGGAGGGAGTAATTATTAAGGAGATC 59.821 40.741 0.00 0.00 0.00 2.75
3337 3390 7.178628 CGGAGGGAGTAATTATTAAGGAGATCA 59.821 40.741 0.00 0.00 0.00 2.92
3383 3442 9.145865 TGTGTTTGTTCCTTGATTTTAAAGTTC 57.854 29.630 0.00 0.00 0.00 3.01
3415 3474 6.546395 GGTGTGAATTGTCAGTAAGCAATAG 58.454 40.000 0.00 0.00 34.61 1.73
3433 3492 6.494835 AGCAATAGTGGAAGACCATTTCTTTT 59.505 34.615 0.00 0.00 45.24 2.27
3434 3493 7.669722 AGCAATAGTGGAAGACCATTTCTTTTA 59.330 33.333 0.00 0.00 45.24 1.52
3435 3494 8.303876 GCAATAGTGGAAGACCATTTCTTTTAA 58.696 33.333 0.00 0.00 45.24 1.52
3436 3495 9.846248 CAATAGTGGAAGACCATTTCTTTTAAG 57.154 33.333 0.00 0.00 45.24 1.85
3437 3496 9.588096 AATAGTGGAAGACCATTTCTTTTAAGT 57.412 29.630 0.00 0.00 45.24 2.24
3438 3497 7.277174 AGTGGAAGACCATTTCTTTTAAGTG 57.723 36.000 0.00 0.00 45.24 3.16
3439 3498 5.920840 GTGGAAGACCATTTCTTTTAAGTGC 59.079 40.000 0.00 0.00 45.24 4.40
3516 3583 2.596776 CCTCTCGGGTGGATGTTCT 58.403 57.895 0.00 0.00 0.00 3.01
3594 3661 6.312426 TGTTTGCACCAAAGTTTACAAAGATG 59.688 34.615 0.00 0.00 33.82 2.90
3666 3733 9.480053 ACAAATTTCTCATCATTTTGTAACTGG 57.520 29.630 0.00 0.00 38.39 4.00
3756 3824 3.632604 TGCAGTTTTTATTCCACGGACAA 59.367 39.130 0.00 0.00 0.00 3.18
3759 3827 5.520649 GCAGTTTTTATTCCACGGACAAAAA 59.479 36.000 11.06 11.06 31.53 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.066858 CAGGGTAGTGTCGATGCAACT 60.067 52.381 0.00 0.00 0.00 3.16
1 2 1.067142 TCAGGGTAGTGTCGATGCAAC 60.067 52.381 0.00 0.00 0.00 4.17
2 3 1.262417 TCAGGGTAGTGTCGATGCAA 58.738 50.000 0.00 0.00 0.00 4.08
3 4 1.204704 CTTCAGGGTAGTGTCGATGCA 59.795 52.381 0.00 0.00 0.00 3.96
4 5 1.927895 CTTCAGGGTAGTGTCGATGC 58.072 55.000 0.00 0.00 0.00 3.91
5 6 1.478510 AGCTTCAGGGTAGTGTCGATG 59.521 52.381 0.00 0.00 0.00 3.84
6 7 1.751924 GAGCTTCAGGGTAGTGTCGAT 59.248 52.381 0.00 0.00 0.00 3.59
7 8 1.174783 GAGCTTCAGGGTAGTGTCGA 58.825 55.000 0.00 0.00 0.00 4.20
8 9 0.173708 GGAGCTTCAGGGTAGTGTCG 59.826 60.000 0.00 0.00 0.00 4.35
9 10 1.267121 TGGAGCTTCAGGGTAGTGTC 58.733 55.000 0.00 0.00 0.00 3.67
10 11 3.475932 TGGAGCTTCAGGGTAGTGT 57.524 52.632 0.00 0.00 0.00 3.55
281 282 1.950828 CTCTTCATAGCAGTGGCAGG 58.049 55.000 0.00 0.00 44.61 4.85
282 283 1.297664 GCTCTTCATAGCAGTGGCAG 58.702 55.000 0.00 0.00 44.61 4.85
283 284 0.107508 GGCTCTTCATAGCAGTGGCA 60.108 55.000 0.00 0.00 44.64 4.92
284 285 0.817229 GGGCTCTTCATAGCAGTGGC 60.817 60.000 0.00 0.00 44.64 5.01
285 286 0.543277 TGGGCTCTTCATAGCAGTGG 59.457 55.000 0.00 0.00 44.64 4.00
286 287 1.950828 CTGGGCTCTTCATAGCAGTG 58.049 55.000 0.00 0.00 44.64 3.66
287 288 0.179936 GCTGGGCTCTTCATAGCAGT 59.820 55.000 0.00 0.00 44.64 4.40
288 289 0.879400 CGCTGGGCTCTTCATAGCAG 60.879 60.000 0.00 0.00 44.64 4.24
289 290 1.144716 CGCTGGGCTCTTCATAGCA 59.855 57.895 0.00 0.00 44.64 3.49
290 291 1.596477 CCGCTGGGCTCTTCATAGC 60.596 63.158 0.00 0.00 41.99 2.97
291 292 1.070445 CCCGCTGGGCTCTTCATAG 59.930 63.158 0.56 0.00 35.35 2.23
292 293 1.382557 TCCCGCTGGGCTCTTCATA 60.383 57.895 8.57 0.00 43.94 2.15
293 294 2.688666 TCCCGCTGGGCTCTTCAT 60.689 61.111 8.57 0.00 43.94 2.57
294 295 3.393970 CTCCCGCTGGGCTCTTCA 61.394 66.667 8.57 0.00 43.94 3.02
295 296 3.077556 TCTCCCGCTGGGCTCTTC 61.078 66.667 8.57 0.00 43.94 2.87
296 297 3.394836 GTCTCCCGCTGGGCTCTT 61.395 66.667 8.57 0.00 43.94 2.85
308 309 4.779733 TCCCTGGGCCTCGTCTCC 62.780 72.222 8.22 0.00 0.00 3.71
309 310 3.462678 GTCCCTGGGCCTCGTCTC 61.463 72.222 8.22 0.00 0.00 3.36
317 318 4.748144 CTTGCCTGGTCCCTGGGC 62.748 72.222 8.22 11.44 45.45 5.36
318 319 2.935481 TCTTGCCTGGTCCCTGGG 60.935 66.667 6.33 6.33 35.85 4.45
319 320 2.673523 CTCTTGCCTGGTCCCTGG 59.326 66.667 4.94 4.94 37.98 4.45
320 321 2.673523 CCTCTTGCCTGGTCCCTG 59.326 66.667 0.00 0.00 0.00 4.45
321 322 2.612115 CCCTCTTGCCTGGTCCCT 60.612 66.667 0.00 0.00 0.00 4.20
322 323 2.936032 ACCCTCTTGCCTGGTCCC 60.936 66.667 0.00 0.00 0.00 4.46
323 324 2.190488 CTCACCCTCTTGCCTGGTCC 62.190 65.000 0.00 0.00 0.00 4.46
324 325 1.194781 TCTCACCCTCTTGCCTGGTC 61.195 60.000 0.00 0.00 0.00 4.02
325 326 0.768221 TTCTCACCCTCTTGCCTGGT 60.768 55.000 0.00 0.00 0.00 4.00
326 327 0.035630 CTTCTCACCCTCTTGCCTGG 60.036 60.000 0.00 0.00 0.00 4.45
327 328 0.035630 CCTTCTCACCCTCTTGCCTG 60.036 60.000 0.00 0.00 0.00 4.85
328 329 1.846712 GCCTTCTCACCCTCTTGCCT 61.847 60.000 0.00 0.00 0.00 4.75
329 330 1.377856 GCCTTCTCACCCTCTTGCC 60.378 63.158 0.00 0.00 0.00 4.52
330 331 1.377856 GGCCTTCTCACCCTCTTGC 60.378 63.158 0.00 0.00 0.00 4.01
331 332 1.301293 GGGCCTTCTCACCCTCTTG 59.699 63.158 0.84 0.00 43.36 3.02
332 333 3.827752 GGGCCTTCTCACCCTCTT 58.172 61.111 0.84 0.00 43.36 2.85
337 338 3.672295 CTCGCTGGGCCTTCTCACC 62.672 68.421 4.53 0.00 0.00 4.02
338 339 2.125350 CTCGCTGGGCCTTCTCAC 60.125 66.667 4.53 0.00 0.00 3.51
339 340 4.087892 GCTCGCTGGGCCTTCTCA 62.088 66.667 4.53 0.00 0.00 3.27
358 359 1.002134 CCACTTGTGGGCTGGGTAG 60.002 63.158 11.72 0.00 0.00 3.18
359 360 2.534396 CCCACTTGTGGGCTGGGTA 61.534 63.158 23.90 0.00 42.99 3.69
360 361 3.902112 CCCACTTGTGGGCTGGGT 61.902 66.667 23.90 0.00 42.99 4.51
367 368 0.324943 CCTAGGTCACCCACTTGTGG 59.675 60.000 12.54 12.54 36.87 4.17
368 369 0.321653 GCCTAGGTCACCCACTTGTG 60.322 60.000 11.31 0.00 37.59 3.33
369 370 0.473886 AGCCTAGGTCACCCACTTGT 60.474 55.000 11.31 0.00 0.00 3.16
370 371 1.207329 GTAGCCTAGGTCACCCACTTG 59.793 57.143 11.31 0.00 0.00 3.16
371 372 1.078989 AGTAGCCTAGGTCACCCACTT 59.921 52.381 11.31 0.00 0.00 3.16
372 373 0.711184 AGTAGCCTAGGTCACCCACT 59.289 55.000 11.31 0.00 0.00 4.00
373 374 1.569653 AAGTAGCCTAGGTCACCCAC 58.430 55.000 11.31 0.00 0.00 4.61
374 375 3.573695 GATAAGTAGCCTAGGTCACCCA 58.426 50.000 11.31 0.16 0.00 4.51
375 376 2.557490 CGATAAGTAGCCTAGGTCACCC 59.443 54.545 11.31 0.00 0.00 4.61
376 377 2.557490 CCGATAAGTAGCCTAGGTCACC 59.443 54.545 11.31 0.00 0.00 4.02
377 378 2.557490 CCCGATAAGTAGCCTAGGTCAC 59.443 54.545 11.31 8.65 0.00 3.67
378 379 2.444388 TCCCGATAAGTAGCCTAGGTCA 59.556 50.000 11.31 0.00 0.00 4.02
379 380 3.083293 CTCCCGATAAGTAGCCTAGGTC 58.917 54.545 11.31 2.66 0.00 3.85
380 381 2.225066 CCTCCCGATAAGTAGCCTAGGT 60.225 54.545 11.31 0.00 0.00 3.08
381 382 2.041350 TCCTCCCGATAAGTAGCCTAGG 59.959 54.545 3.67 3.67 0.00 3.02
382 383 3.244981 ACTCCTCCCGATAAGTAGCCTAG 60.245 52.174 0.00 0.00 0.00 3.02
383 384 2.715336 ACTCCTCCCGATAAGTAGCCTA 59.285 50.000 0.00 0.00 0.00 3.93
384 385 1.499870 ACTCCTCCCGATAAGTAGCCT 59.500 52.381 0.00 0.00 0.00 4.58
385 386 1.887854 GACTCCTCCCGATAAGTAGCC 59.112 57.143 0.00 0.00 0.00 3.93
386 387 2.815503 GAGACTCCTCCCGATAAGTAGC 59.184 54.545 0.00 0.00 33.30 3.58
387 388 4.069304 CAGAGACTCCTCCCGATAAGTAG 58.931 52.174 0.00 0.00 40.30 2.57
388 389 3.181442 CCAGAGACTCCTCCCGATAAGTA 60.181 52.174 0.00 0.00 40.30 2.24
389 390 2.423660 CCAGAGACTCCTCCCGATAAGT 60.424 54.545 0.00 0.00 40.30 2.24
390 391 2.158593 TCCAGAGACTCCTCCCGATAAG 60.159 54.545 0.00 0.00 40.30 1.73
391 392 1.850998 TCCAGAGACTCCTCCCGATAA 59.149 52.381 0.00 0.00 40.30 1.75
392 393 1.422024 CTCCAGAGACTCCTCCCGATA 59.578 57.143 0.00 0.00 40.30 2.92
393 394 0.184933 CTCCAGAGACTCCTCCCGAT 59.815 60.000 0.00 0.00 40.30 4.18
394 395 1.610327 CTCCAGAGACTCCTCCCGA 59.390 63.158 0.00 0.00 40.30 5.14
395 396 1.454847 CCTCCAGAGACTCCTCCCG 60.455 68.421 0.00 0.00 40.30 5.14
396 397 0.336737 TTCCTCCAGAGACTCCTCCC 59.663 60.000 0.00 0.00 40.30 4.30
397 398 1.687996 CCTTCCTCCAGAGACTCCTCC 60.688 61.905 0.00 0.00 40.30 4.30
398 399 1.775385 CCTTCCTCCAGAGACTCCTC 58.225 60.000 0.00 0.00 39.72 3.71
399 400 0.325203 GCCTTCCTCCAGAGACTCCT 60.325 60.000 0.00 0.00 0.00 3.69
400 401 0.616111 TGCCTTCCTCCAGAGACTCC 60.616 60.000 0.00 0.00 0.00 3.85
401 402 0.823460 CTGCCTTCCTCCAGAGACTC 59.177 60.000 0.00 0.00 0.00 3.36
402 403 0.617249 CCTGCCTTCCTCCAGAGACT 60.617 60.000 0.00 0.00 0.00 3.24
403 404 1.904032 CCTGCCTTCCTCCAGAGAC 59.096 63.158 0.00 0.00 0.00 3.36
404 405 1.992277 GCCTGCCTTCCTCCAGAGA 60.992 63.158 0.00 0.00 0.00 3.10
405 406 2.254737 CTGCCTGCCTTCCTCCAGAG 62.255 65.000 0.00 0.00 0.00 3.35
406 407 2.203983 TGCCTGCCTTCCTCCAGA 60.204 61.111 0.00 0.00 0.00 3.86
407 408 2.271497 CTGCCTGCCTTCCTCCAG 59.729 66.667 0.00 0.00 0.00 3.86
408 409 3.333219 CCTGCCTGCCTTCCTCCA 61.333 66.667 0.00 0.00 0.00 3.86
409 410 1.931007 AATCCTGCCTGCCTTCCTCC 61.931 60.000 0.00 0.00 0.00 4.30
410 411 0.033699 AAATCCTGCCTGCCTTCCTC 60.034 55.000 0.00 0.00 0.00 3.71
411 412 1.213926 CTAAATCCTGCCTGCCTTCCT 59.786 52.381 0.00 0.00 0.00 3.36
412 413 1.064389 ACTAAATCCTGCCTGCCTTCC 60.064 52.381 0.00 0.00 0.00 3.46
413 414 2.424956 CAACTAAATCCTGCCTGCCTTC 59.575 50.000 0.00 0.00 0.00 3.46
414 415 2.450476 CAACTAAATCCTGCCTGCCTT 58.550 47.619 0.00 0.00 0.00 4.35
415 416 1.341383 CCAACTAAATCCTGCCTGCCT 60.341 52.381 0.00 0.00 0.00 4.75
416 417 1.106285 CCAACTAAATCCTGCCTGCC 58.894 55.000 0.00 0.00 0.00 4.85
417 418 0.457443 GCCAACTAAATCCTGCCTGC 59.543 55.000 0.00 0.00 0.00 4.85
418 419 1.838112 TGCCAACTAAATCCTGCCTG 58.162 50.000 0.00 0.00 0.00 4.85
419 420 2.603075 TTGCCAACTAAATCCTGCCT 57.397 45.000 0.00 0.00 0.00 4.75
420 421 3.448660 AGAATTGCCAACTAAATCCTGCC 59.551 43.478 0.00 0.00 0.00 4.85
421 422 4.725790 AGAATTGCCAACTAAATCCTGC 57.274 40.909 0.00 0.00 0.00 4.85
422 423 5.335127 CGAAGAATTGCCAACTAAATCCTG 58.665 41.667 0.00 0.00 0.00 3.86
423 424 4.399303 CCGAAGAATTGCCAACTAAATCCT 59.601 41.667 0.00 0.00 0.00 3.24
424 425 4.672409 CCGAAGAATTGCCAACTAAATCC 58.328 43.478 0.00 0.00 0.00 3.01
425 426 4.105486 GCCGAAGAATTGCCAACTAAATC 58.895 43.478 0.00 0.00 0.00 2.17
426 427 3.427503 CGCCGAAGAATTGCCAACTAAAT 60.428 43.478 0.00 0.00 0.00 1.40
427 428 2.095466 CGCCGAAGAATTGCCAACTAAA 60.095 45.455 0.00 0.00 0.00 1.85
428 429 1.466950 CGCCGAAGAATTGCCAACTAA 59.533 47.619 0.00 0.00 0.00 2.24
429 430 1.083489 CGCCGAAGAATTGCCAACTA 58.917 50.000 0.00 0.00 0.00 2.24
430 431 1.586154 CCGCCGAAGAATTGCCAACT 61.586 55.000 0.00 0.00 0.00 3.16
431 432 1.154035 CCGCCGAAGAATTGCCAAC 60.154 57.895 0.00 0.00 0.00 3.77
432 433 2.988688 GCCGCCGAAGAATTGCCAA 61.989 57.895 0.00 0.00 0.00 4.52
433 434 3.439540 GCCGCCGAAGAATTGCCA 61.440 61.111 0.00 0.00 0.00 4.92
434 435 4.536687 CGCCGCCGAAGAATTGCC 62.537 66.667 0.00 0.00 36.29 4.52
435 436 4.536687 CCGCCGCCGAAGAATTGC 62.537 66.667 0.00 0.00 36.29 3.56
436 437 4.536687 GCCGCCGCCGAAGAATTG 62.537 66.667 0.00 0.00 36.29 2.32
451 452 4.491409 GAGGGGAAGGAAGCCGCC 62.491 72.222 0.00 0.00 39.01 6.13
452 453 4.491409 GGAGGGGAAGGAAGCCGC 62.491 72.222 0.00 0.00 38.53 6.53
453 454 3.798511 GGGAGGGGAAGGAAGCCG 61.799 72.222 0.00 0.00 0.00 5.52
454 455 3.421386 GGGGAGGGGAAGGAAGCC 61.421 72.222 0.00 0.00 0.00 4.35
455 456 3.421386 GGGGGAGGGGAAGGAAGC 61.421 72.222 0.00 0.00 0.00 3.86
456 457 1.694525 GAGGGGGAGGGGAAGGAAG 60.695 68.421 0.00 0.00 0.00 3.46
457 458 2.191846 AGAGGGGGAGGGGAAGGAA 61.192 63.158 0.00 0.00 0.00 3.36
458 459 2.543637 AGAGGGGGAGGGGAAGGA 60.544 66.667 0.00 0.00 0.00 3.36
459 460 2.040359 GAGAGGGGGAGGGGAAGG 60.040 72.222 0.00 0.00 0.00 3.46
460 461 0.253394 AAAGAGAGGGGGAGGGGAAG 60.253 60.000 0.00 0.00 0.00 3.46
461 462 1.009675 CTAAAGAGAGGGGGAGGGGAA 59.990 57.143 0.00 0.00 0.00 3.97
462 463 0.642710 CTAAAGAGAGGGGGAGGGGA 59.357 60.000 0.00 0.00 0.00 4.81
463 464 0.642710 TCTAAAGAGAGGGGGAGGGG 59.357 60.000 0.00 0.00 0.00 4.79
464 465 2.120312 GTTCTAAAGAGAGGGGGAGGG 58.880 57.143 0.00 0.00 31.77 4.30
465 466 2.120312 GGTTCTAAAGAGAGGGGGAGG 58.880 57.143 0.00 0.00 31.77 4.30
466 467 2.120312 GGGTTCTAAAGAGAGGGGGAG 58.880 57.143 0.00 0.00 31.77 4.30
467 468 1.728701 AGGGTTCTAAAGAGAGGGGGA 59.271 52.381 0.00 0.00 31.77 4.81
468 469 2.272074 AGGGTTCTAAAGAGAGGGGG 57.728 55.000 0.00 0.00 31.77 5.40
469 470 3.996957 ACTAGGGTTCTAAAGAGAGGGG 58.003 50.000 0.00 0.00 31.77 4.79
470 471 6.196434 AGTAACTAGGGTTCTAAAGAGAGGG 58.804 44.000 0.00 0.00 36.92 4.30
471 472 7.396623 TGAAGTAACTAGGGTTCTAAAGAGAGG 59.603 40.741 0.00 0.00 36.92 3.69
472 473 8.350852 TGAAGTAACTAGGGTTCTAAAGAGAG 57.649 38.462 0.00 0.00 36.92 3.20
473 474 8.168725 TCTGAAGTAACTAGGGTTCTAAAGAGA 58.831 37.037 0.00 0.00 36.92 3.10
474 475 8.350852 TCTGAAGTAACTAGGGTTCTAAAGAG 57.649 38.462 0.00 0.00 36.92 2.85
475 476 8.896722 ATCTGAAGTAACTAGGGTTCTAAAGA 57.103 34.615 0.00 0.00 36.92 2.52
476 477 9.945904 AAATCTGAAGTAACTAGGGTTCTAAAG 57.054 33.333 0.00 0.00 36.92 1.85
477 478 9.720769 CAAATCTGAAGTAACTAGGGTTCTAAA 57.279 33.333 0.00 0.00 36.92 1.85
478 479 8.319146 CCAAATCTGAAGTAACTAGGGTTCTAA 58.681 37.037 0.00 0.00 36.92 2.10
479 480 7.456902 ACCAAATCTGAAGTAACTAGGGTTCTA 59.543 37.037 0.00 0.00 36.92 2.10
480 481 6.272558 ACCAAATCTGAAGTAACTAGGGTTCT 59.727 38.462 0.00 0.00 36.92 3.01
481 482 6.371825 CACCAAATCTGAAGTAACTAGGGTTC 59.628 42.308 0.00 0.00 36.92 3.62
482 483 6.183361 ACACCAAATCTGAAGTAACTAGGGTT 60.183 38.462 0.00 0.00 39.26 4.11
483 484 5.309806 ACACCAAATCTGAAGTAACTAGGGT 59.690 40.000 0.00 0.00 0.00 4.34
484 485 5.805728 ACACCAAATCTGAAGTAACTAGGG 58.194 41.667 0.00 0.00 0.00 3.53
485 486 7.612677 ACTACACCAAATCTGAAGTAACTAGG 58.387 38.462 0.00 0.00 0.00 3.02
486 487 9.141400 GAACTACACCAAATCTGAAGTAACTAG 57.859 37.037 0.00 0.00 0.00 2.57
487 488 8.092687 GGAACTACACCAAATCTGAAGTAACTA 58.907 37.037 0.00 0.00 0.00 2.24
488 489 6.935208 GGAACTACACCAAATCTGAAGTAACT 59.065 38.462 0.00 0.00 0.00 2.24
489 490 6.128634 CGGAACTACACCAAATCTGAAGTAAC 60.129 42.308 0.00 0.00 0.00 2.50
490 491 5.929992 CGGAACTACACCAAATCTGAAGTAA 59.070 40.000 0.00 0.00 0.00 2.24
491 492 5.244402 TCGGAACTACACCAAATCTGAAGTA 59.756 40.000 0.00 0.00 0.00 2.24
492 493 4.039973 TCGGAACTACACCAAATCTGAAGT 59.960 41.667 0.00 0.00 0.00 3.01
493 494 4.566004 TCGGAACTACACCAAATCTGAAG 58.434 43.478 0.00 0.00 0.00 3.02
494 495 4.282449 TCTCGGAACTACACCAAATCTGAA 59.718 41.667 0.00 0.00 0.00 3.02
495 496 3.830178 TCTCGGAACTACACCAAATCTGA 59.170 43.478 0.00 0.00 0.00 3.27
496 497 3.927142 GTCTCGGAACTACACCAAATCTG 59.073 47.826 0.00 0.00 0.00 2.90
497 498 3.576982 TGTCTCGGAACTACACCAAATCT 59.423 43.478 0.00 0.00 0.00 2.40
498 499 3.921677 TGTCTCGGAACTACACCAAATC 58.078 45.455 0.00 0.00 0.00 2.17
499 500 4.345859 TTGTCTCGGAACTACACCAAAT 57.654 40.909 0.00 0.00 0.00 2.32
500 501 3.823281 TTGTCTCGGAACTACACCAAA 57.177 42.857 0.00 0.00 0.00 3.28
501 502 3.576982 AGATTGTCTCGGAACTACACCAA 59.423 43.478 0.00 0.00 0.00 3.67
502 503 3.162666 AGATTGTCTCGGAACTACACCA 58.837 45.455 0.00 0.00 0.00 4.17
503 504 3.870633 AGATTGTCTCGGAACTACACC 57.129 47.619 0.00 0.00 0.00 4.16
504 505 4.557205 ACAAGATTGTCTCGGAACTACAC 58.443 43.478 0.00 0.00 36.50 2.90
505 506 4.866508 ACAAGATTGTCTCGGAACTACA 57.133 40.909 0.00 0.00 36.50 2.74
506 507 8.404000 TCTAATACAAGATTGTCTCGGAACTAC 58.596 37.037 0.59 0.00 42.35 2.73
507 508 8.515695 TCTAATACAAGATTGTCTCGGAACTA 57.484 34.615 0.59 0.00 42.35 2.24
508 509 7.406031 TCTAATACAAGATTGTCTCGGAACT 57.594 36.000 0.59 0.00 42.35 3.01
509 510 7.382759 GGATCTAATACAAGATTGTCTCGGAAC 59.617 40.741 0.59 0.00 42.35 3.62
510 511 7.069455 TGGATCTAATACAAGATTGTCTCGGAA 59.931 37.037 0.59 0.00 42.35 4.30
511 512 6.549736 TGGATCTAATACAAGATTGTCTCGGA 59.450 38.462 0.59 0.00 42.35 4.55
512 513 6.642950 GTGGATCTAATACAAGATTGTCTCGG 59.357 42.308 0.59 0.00 42.35 4.63
513 514 7.380870 CAGTGGATCTAATACAAGATTGTCTCG 59.619 40.741 0.59 0.00 42.35 4.04
514 515 8.417106 TCAGTGGATCTAATACAAGATTGTCTC 58.583 37.037 0.59 0.00 42.35 3.36
515 516 8.311395 TCAGTGGATCTAATACAAGATTGTCT 57.689 34.615 0.59 0.00 42.35 3.41
516 517 8.417106 TCTCAGTGGATCTAATACAAGATTGTC 58.583 37.037 0.59 0.00 42.35 3.18
517 518 8.311395 TCTCAGTGGATCTAATACAAGATTGT 57.689 34.615 3.37 3.37 44.86 2.71
518 519 7.384660 GCTCTCAGTGGATCTAATACAAGATTG 59.615 40.741 0.00 0.00 36.33 2.67
519 520 7.441017 GCTCTCAGTGGATCTAATACAAGATT 58.559 38.462 0.00 0.00 36.33 2.40
520 521 6.294453 CGCTCTCAGTGGATCTAATACAAGAT 60.294 42.308 0.00 0.00 38.95 2.40
521 522 5.009110 CGCTCTCAGTGGATCTAATACAAGA 59.991 44.000 0.00 0.00 0.00 3.02
522 523 5.218885 CGCTCTCAGTGGATCTAATACAAG 58.781 45.833 0.00 0.00 0.00 3.16
523 524 4.645136 ACGCTCTCAGTGGATCTAATACAA 59.355 41.667 0.00 0.00 0.00 2.41
524 525 4.207955 ACGCTCTCAGTGGATCTAATACA 58.792 43.478 0.00 0.00 0.00 2.29
525 526 4.839668 ACGCTCTCAGTGGATCTAATAC 57.160 45.455 0.00 0.00 0.00 1.89
526 527 5.826208 TGTTACGCTCTCAGTGGATCTAATA 59.174 40.000 0.00 0.00 0.00 0.98
527 528 4.645136 TGTTACGCTCTCAGTGGATCTAAT 59.355 41.667 0.00 0.00 0.00 1.73
528 529 4.014406 TGTTACGCTCTCAGTGGATCTAA 58.986 43.478 0.00 0.00 0.00 2.10
529 530 3.377485 GTGTTACGCTCTCAGTGGATCTA 59.623 47.826 0.00 0.00 0.00 1.98
530 531 2.164624 GTGTTACGCTCTCAGTGGATCT 59.835 50.000 0.00 0.00 0.00 2.75
531 532 2.164624 AGTGTTACGCTCTCAGTGGATC 59.835 50.000 0.00 0.00 0.00 3.36
532 533 2.094494 CAGTGTTACGCTCTCAGTGGAT 60.094 50.000 0.00 0.00 0.00 3.41
533 534 1.269723 CAGTGTTACGCTCTCAGTGGA 59.730 52.381 0.00 0.00 0.00 4.02
534 535 1.000163 ACAGTGTTACGCTCTCAGTGG 60.000 52.381 0.00 0.00 36.99 4.00
535 536 2.423926 ACAGTGTTACGCTCTCAGTG 57.576 50.000 0.00 0.00 38.16 3.66
536 537 2.882761 TGTACAGTGTTACGCTCTCAGT 59.117 45.455 0.00 0.00 0.00 3.41
537 538 3.554259 TGTACAGTGTTACGCTCTCAG 57.446 47.619 0.00 0.00 0.00 3.35
538 539 4.456566 TGTATGTACAGTGTTACGCTCTCA 59.543 41.667 0.00 0.00 0.00 3.27
539 540 4.978186 TGTATGTACAGTGTTACGCTCTC 58.022 43.478 0.00 0.00 0.00 3.20
540 541 4.982999 CTGTATGTACAGTGTTACGCTCT 58.017 43.478 0.00 0.00 46.51 4.09
574 575 0.188342 AGCTGGGGTCATGTGGTTTT 59.812 50.000 0.00 0.00 0.00 2.43
645 646 2.489938 TGCAGGAGGTTTCATGTACC 57.510 50.000 10.56 10.56 37.43 3.34
760 763 3.537795 AGGTACTGTAGACCACCAGAA 57.462 47.619 2.79 0.00 39.65 3.02
1417 1440 0.738975 TCAGCGGTATGAACTCCTCG 59.261 55.000 0.00 0.00 0.00 4.63
1954 1977 1.328279 ACATGAGGACGTCTGTGTGA 58.672 50.000 16.46 0.00 0.00 3.58
1981 2006 8.700973 TGATGCATCCAAATAGTTACTACAGTA 58.299 33.333 23.67 0.00 0.00 2.74
1982 2007 7.564793 TGATGCATCCAAATAGTTACTACAGT 58.435 34.615 23.67 0.00 0.00 3.55
1983 2008 8.437360 TTGATGCATCCAAATAGTTACTACAG 57.563 34.615 23.67 0.00 0.00 2.74
1984 2009 8.800370 TTTGATGCATCCAAATAGTTACTACA 57.200 30.769 23.67 0.00 0.00 2.74
2022 2047 4.394795 GCACACACGTAATTCATTCAGAC 58.605 43.478 0.00 0.00 0.00 3.51
2043 2068 6.765915 AGAGATTTAGAATTTGTCTTGGGC 57.234 37.500 0.00 0.00 37.84 5.36
2114 2139 1.579698 CATCCACCTTCATGAGCTCG 58.420 55.000 9.64 0.00 0.00 5.03
2294 2326 6.165659 ACTTCAATTTAGATACACACGCAC 57.834 37.500 0.00 0.00 0.00 5.34
2297 2329 9.445786 ACAAAAACTTCAATTTAGATACACACG 57.554 29.630 0.00 0.00 0.00 4.49
2458 2495 2.043752 TAGATGGCGGTCGGTCCA 60.044 61.111 0.00 0.00 36.70 4.02
2469 2506 4.910585 GGTGCGCCCCGTAGATGG 62.911 72.222 4.45 0.00 0.00 3.51
2636 2673 2.590114 GGTCCACCTTGTAGGCGGT 61.590 63.158 0.05 0.00 38.71 5.68
2834 2871 1.634225 GCGCGCGCTACTTAATTGA 59.366 52.632 44.38 0.00 38.26 2.57
2835 2872 4.173659 GCGCGCGCTACTTAATTG 57.826 55.556 44.38 11.16 38.26 2.32
2851 2888 2.495084 GGGCTACTAGCTAATTGGTGC 58.505 52.381 7.99 0.00 41.99 5.01
2853 2890 3.061909 AGGGGCTACTAGCTAATTGGT 57.938 47.619 7.99 0.00 41.99 3.67
2854 2891 5.763876 ATTAGGGGCTACTAGCTAATTGG 57.236 43.478 7.99 0.00 41.99 3.16
2855 2892 8.594550 TCTTAATTAGGGGCTACTAGCTAATTG 58.405 37.037 16.71 7.51 41.99 2.32
2856 2893 8.737601 TCTTAATTAGGGGCTACTAGCTAATT 57.262 34.615 7.99 11.70 41.99 1.40
2857 2894 8.737601 TTCTTAATTAGGGGCTACTAGCTAAT 57.262 34.615 7.99 2.36 41.99 1.73
2858 2895 7.788385 ACTTCTTAATTAGGGGCTACTAGCTAA 59.212 37.037 7.99 0.13 41.99 3.09
2859 2896 7.303713 ACTTCTTAATTAGGGGCTACTAGCTA 58.696 38.462 7.99 0.00 41.99 3.32
2860 2897 6.144625 ACTTCTTAATTAGGGGCTACTAGCT 58.855 40.000 7.99 0.00 41.99 3.32
2861 2898 6.422344 ACTTCTTAATTAGGGGCTACTAGC 57.578 41.667 0.00 0.00 41.46 3.42
2862 2899 7.147532 ACCAACTTCTTAATTAGGGGCTACTAG 60.148 40.741 0.00 0.00 0.00 2.57
2863 2900 6.675303 ACCAACTTCTTAATTAGGGGCTACTA 59.325 38.462 0.00 0.00 0.00 1.82
2864 2901 5.491439 ACCAACTTCTTAATTAGGGGCTACT 59.509 40.000 0.00 0.00 0.00 2.57
2865 2902 5.752650 ACCAACTTCTTAATTAGGGGCTAC 58.247 41.667 0.00 0.00 0.00 3.58
3059 3111 3.439825 AGCACAAAAACAAAGCCCAAAAG 59.560 39.130 0.00 0.00 0.00 2.27
3060 3112 3.416156 AGCACAAAAACAAAGCCCAAAA 58.584 36.364 0.00 0.00 0.00 2.44
3119 3171 6.016276 CCAACCAAGTTTACAAAGCTAGTCAT 60.016 38.462 0.00 0.00 0.00 3.06
3120 3172 5.298276 CCAACCAAGTTTACAAAGCTAGTCA 59.702 40.000 0.00 0.00 0.00 3.41
3131 3183 2.963599 TCCCCTCCAACCAAGTTTAC 57.036 50.000 0.00 0.00 0.00 2.01
3132 3184 3.975479 TTTCCCCTCCAACCAAGTTTA 57.025 42.857 0.00 0.00 0.00 2.01
3133 3185 2.858787 TTTCCCCTCCAACCAAGTTT 57.141 45.000 0.00 0.00 0.00 2.66
3135 3187 4.479156 TTATTTTCCCCTCCAACCAAGT 57.521 40.909 0.00 0.00 0.00 3.16
3136 3188 6.194967 AGTATTATTTTCCCCTCCAACCAAG 58.805 40.000 0.00 0.00 0.00 3.61
3137 3189 6.160483 AGTATTATTTTCCCCTCCAACCAA 57.840 37.500 0.00 0.00 0.00 3.67
3139 3191 5.138276 GGAGTATTATTTTCCCCTCCAACC 58.862 45.833 0.00 0.00 38.65 3.77
3148 3201 5.061853 GGAACGGAGGGAGTATTATTTTCC 58.938 45.833 0.00 0.00 0.00 3.13
3149 3202 5.926663 AGGAACGGAGGGAGTATTATTTTC 58.073 41.667 0.00 0.00 0.00 2.29
3150 3203 5.970501 AGGAACGGAGGGAGTATTATTTT 57.029 39.130 0.00 0.00 0.00 1.82
3152 3205 7.628501 ATTTAGGAACGGAGGGAGTATTATT 57.371 36.000 0.00 0.00 0.00 1.40
3154 3207 8.731591 ATTATTTAGGAACGGAGGGAGTATTA 57.268 34.615 0.00 0.00 0.00 0.98
3155 3208 7.628501 ATTATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
3156 3209 7.072076 ACAATTATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
3157 3210 6.384886 ACAATTATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3158 3211 5.191124 ACAATTATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3159 3212 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3160 3213 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3161 3214 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3162 3215 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3163 3216 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3164 3217 9.947433 TTAGAAAGACAATTATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
3179 3232 9.787532 CACTTGTTGAAATCTTTAGAAAGACAA 57.212 29.630 6.85 4.98 46.80 3.18
3180 3233 9.173021 TCACTTGTTGAAATCTTTAGAAAGACA 57.827 29.630 6.85 0.00 46.80 3.41
3181 3234 9.439537 GTCACTTGTTGAAATCTTTAGAAAGAC 57.560 33.333 6.85 0.00 40.95 3.01
3182 3235 9.396022 AGTCACTTGTTGAAATCTTTAGAAAGA 57.604 29.630 7.15 7.15 41.72 2.52
3185 3238 9.607988 TGTAGTCACTTGTTGAAATCTTTAGAA 57.392 29.630 0.00 0.00 35.39 2.10
3186 3239 9.778741 ATGTAGTCACTTGTTGAAATCTTTAGA 57.221 29.630 0.00 0.00 35.39 2.10
3189 3242 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
3190 3243 7.117812 CCGTATGTAGTCACTTGTTGAAATCTT 59.882 37.037 0.00 0.00 35.39 2.40
3191 3244 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3192 3245 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3193 3246 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3194 3247 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3195 3248 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3196 3249 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3197 3250 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3198 3251 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3199 3252 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3200 3253 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3201 3254 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3202 3255 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3203 3256 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3204 3257 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3205 3258 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3206 3259 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3207 3260 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3208 3261 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3209 3262 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3210 3263 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3211 3264 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3212 3265 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3213 3266 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3214 3267 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3215 3268 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3216 3269 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3255 3308 9.653287 CAAATGGACTATAACATACGGATGTAT 57.347 33.333 15.10 10.34 45.93 2.29
3256 3309 8.862085 TCAAATGGACTATAACATACGGATGTA 58.138 33.333 15.10 3.00 45.93 2.29
3258 3311 8.088365 TCTCAAATGGACTATAACATACGGATG 58.912 37.037 5.94 5.94 39.16 3.51
3259 3312 8.190326 TCTCAAATGGACTATAACATACGGAT 57.810 34.615 0.00 0.00 0.00 4.18
3260 3313 7.591421 TCTCAAATGGACTATAACATACGGA 57.409 36.000 0.00 0.00 0.00 4.69
3261 3314 7.331934 CCATCTCAAATGGACTATAACATACGG 59.668 40.741 0.00 0.00 41.64 4.02
3262 3315 7.148573 GCCATCTCAAATGGACTATAACATACG 60.149 40.741 8.23 0.00 41.64 3.06
3263 3316 7.880195 AGCCATCTCAAATGGACTATAACATAC 59.120 37.037 8.23 0.00 41.64 2.39
3264 3317 7.977818 AGCCATCTCAAATGGACTATAACATA 58.022 34.615 8.23 0.00 41.64 2.29
3265 3318 6.845908 AGCCATCTCAAATGGACTATAACAT 58.154 36.000 8.23 0.00 41.64 2.71
3266 3319 6.252599 AGCCATCTCAAATGGACTATAACA 57.747 37.500 8.23 0.00 41.64 2.41
3267 3320 7.671302 TCTAGCCATCTCAAATGGACTATAAC 58.329 38.462 8.23 0.00 41.64 1.89
3268 3321 7.855784 TCTAGCCATCTCAAATGGACTATAA 57.144 36.000 8.23 0.00 41.64 0.98
3269 3322 7.855784 TTCTAGCCATCTCAAATGGACTATA 57.144 36.000 8.23 0.55 41.64 1.31
3270 3323 6.753913 TTCTAGCCATCTCAAATGGACTAT 57.246 37.500 8.23 0.00 41.64 2.12
3271 3324 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
3272 3325 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
3273 3326 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
3274 3327 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
3275 3328 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
3276 3329 6.373774 AGTTGTCTTTCTAGCCATCTCAAATG 59.626 38.462 0.00 0.00 0.00 2.32
3277 3330 6.479884 AGTTGTCTTTCTAGCCATCTCAAAT 58.520 36.000 0.00 0.00 0.00 2.32
3278 3331 5.869579 AGTTGTCTTTCTAGCCATCTCAAA 58.130 37.500 0.00 0.00 0.00 2.69
3279 3332 5.489792 AGTTGTCTTTCTAGCCATCTCAA 57.510 39.130 0.00 0.00 0.00 3.02
3280 3333 6.798427 ATAGTTGTCTTTCTAGCCATCTCA 57.202 37.500 0.00 0.00 0.00 3.27
3281 3334 7.011857 CCAAATAGTTGTCTTTCTAGCCATCTC 59.988 40.741 1.80 0.00 32.40 2.75
3282 3335 6.825721 CCAAATAGTTGTCTTTCTAGCCATCT 59.174 38.462 1.80 0.00 32.40 2.90
3283 3336 6.038714 CCCAAATAGTTGTCTTTCTAGCCATC 59.961 42.308 1.80 0.00 32.40 3.51
3284 3337 5.888161 CCCAAATAGTTGTCTTTCTAGCCAT 59.112 40.000 1.80 0.00 32.40 4.40
3285 3338 5.013704 TCCCAAATAGTTGTCTTTCTAGCCA 59.986 40.000 1.80 0.00 32.40 4.75
3286 3339 5.497474 TCCCAAATAGTTGTCTTTCTAGCC 58.503 41.667 1.80 0.00 32.40 3.93
3287 3340 6.402226 CGTTCCCAAATAGTTGTCTTTCTAGC 60.402 42.308 1.80 0.00 32.40 3.42
3288 3341 6.092259 CCGTTCCCAAATAGTTGTCTTTCTAG 59.908 42.308 1.80 0.00 32.40 2.43
3289 3342 5.935789 CCGTTCCCAAATAGTTGTCTTTCTA 59.064 40.000 1.80 0.00 32.40 2.10
3290 3343 4.760204 CCGTTCCCAAATAGTTGTCTTTCT 59.240 41.667 1.80 0.00 32.40 2.52
3291 3344 4.758165 TCCGTTCCCAAATAGTTGTCTTTC 59.242 41.667 1.80 0.00 32.40 2.62
3292 3345 4.721132 TCCGTTCCCAAATAGTTGTCTTT 58.279 39.130 1.80 0.00 32.40 2.52
3293 3346 4.324267 CTCCGTTCCCAAATAGTTGTCTT 58.676 43.478 1.80 0.00 32.40 3.01
3294 3347 3.307480 CCTCCGTTCCCAAATAGTTGTCT 60.307 47.826 1.80 0.00 32.40 3.41
3295 3348 3.007635 CCTCCGTTCCCAAATAGTTGTC 58.992 50.000 1.80 0.00 32.40 3.18
3296 3349 2.290705 CCCTCCGTTCCCAAATAGTTGT 60.291 50.000 1.80 0.00 32.40 3.32
3297 3350 2.026636 TCCCTCCGTTCCCAAATAGTTG 60.027 50.000 0.00 0.00 34.25 3.16
3298 3351 2.238898 CTCCCTCCGTTCCCAAATAGTT 59.761 50.000 0.00 0.00 0.00 2.24
3299 3352 1.838077 CTCCCTCCGTTCCCAAATAGT 59.162 52.381 0.00 0.00 0.00 2.12
3300 3353 1.838077 ACTCCCTCCGTTCCCAAATAG 59.162 52.381 0.00 0.00 0.00 1.73
3301 3354 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3302 3355 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
3303 3356 1.732117 TTACTCCCTCCGTTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
3304 3357 1.961133 ATTACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
3305 3358 1.961133 AATTACTCCCTCCGTTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
3306 3359 4.701651 AATAATTACTCCCTCCGTTCCC 57.298 45.455 0.00 0.00 0.00 3.97
3307 3360 6.042437 TCCTTAATAATTACTCCCTCCGTTCC 59.958 42.308 0.00 0.00 0.00 3.62
3308 3361 7.015001 TCTCCTTAATAATTACTCCCTCCGTTC 59.985 40.741 0.00 0.00 0.00 3.95
3309 3362 6.842807 TCTCCTTAATAATTACTCCCTCCGTT 59.157 38.462 0.00 0.00 0.00 4.44
3310 3363 6.379579 TCTCCTTAATAATTACTCCCTCCGT 58.620 40.000 0.00 0.00 0.00 4.69
3311 3364 6.912951 TCTCCTTAATAATTACTCCCTCCG 57.087 41.667 0.00 0.00 0.00 4.63
3312 3365 8.437274 TGATCTCCTTAATAATTACTCCCTCC 57.563 38.462 0.00 0.00 0.00 4.30
3313 3366 9.095700 ACTGATCTCCTTAATAATTACTCCCTC 57.904 37.037 0.00 0.00 0.00 4.30
3314 3367 8.875168 CACTGATCTCCTTAATAATTACTCCCT 58.125 37.037 0.00 0.00 0.00 4.20
3315 3368 8.652290 ACACTGATCTCCTTAATAATTACTCCC 58.348 37.037 0.00 0.00 0.00 4.30
3336 3389 2.234908 AGCCCTAAAGCTCAGTACACTG 59.765 50.000 2.84 2.84 39.48 3.66
3337 3390 2.234908 CAGCCCTAAAGCTCAGTACACT 59.765 50.000 0.00 0.00 42.61 3.55
3383 3442 5.757886 ACTGACAATTCACACCGTTTATTG 58.242 37.500 0.00 0.00 33.55 1.90
3415 3474 5.920840 GCACTTAAAAGAAATGGTCTTCCAC 59.079 40.000 0.00 0.00 46.36 4.02
3433 3492 8.806429 TTCTGGAATCAATTATTCAGCACTTA 57.194 30.769 0.00 0.00 45.05 2.24
3434 3493 7.707624 TTCTGGAATCAATTATTCAGCACTT 57.292 32.000 0.00 0.00 45.05 3.16
3435 3494 7.893124 ATTCTGGAATCAATTATTCAGCACT 57.107 32.000 0.00 0.00 45.05 4.40
3436 3495 8.937634 AAATTCTGGAATCAATTATTCAGCAC 57.062 30.769 0.00 0.00 45.05 4.40
3437 3496 8.974238 AGAAATTCTGGAATCAATTATTCAGCA 58.026 29.630 0.00 0.00 45.05 4.41
3438 3497 9.460906 GAGAAATTCTGGAATCAATTATTCAGC 57.539 33.333 0.00 0.00 45.05 4.26
3467 3526 8.773404 ATACTGAGACAGGTTATTACACAAAC 57.227 34.615 0.00 0.00 35.51 2.93
3475 3534 9.668497 GAGGTAAAAATACTGAGACAGGTTATT 57.332 33.333 0.00 0.00 35.51 1.40
3516 3583 6.581388 AGGAATTCACTTTGGATATCAGGA 57.419 37.500 7.93 0.00 0.00 3.86
3553 3620 6.238759 GGTGCAAACAGAGTAAAAGTTCATCT 60.239 38.462 0.00 0.00 0.00 2.90
3554 3621 5.915196 GGTGCAAACAGAGTAAAAGTTCATC 59.085 40.000 0.00 0.00 0.00 2.92
3555 3622 5.359576 TGGTGCAAACAGAGTAAAAGTTCAT 59.640 36.000 0.00 0.00 0.00 2.57
3556 3623 4.702612 TGGTGCAAACAGAGTAAAAGTTCA 59.297 37.500 0.00 0.00 0.00 3.18
3557 3624 5.243426 TGGTGCAAACAGAGTAAAAGTTC 57.757 39.130 0.00 0.00 0.00 3.01
3558 3625 5.652994 TTGGTGCAAACAGAGTAAAAGTT 57.347 34.783 0.00 0.00 0.00 2.66
3559 3626 5.185056 ACTTTGGTGCAAACAGAGTAAAAGT 59.815 36.000 12.40 6.67 32.28 2.66
3560 3627 5.650543 ACTTTGGTGCAAACAGAGTAAAAG 58.349 37.500 12.40 6.17 32.28 2.27
3570 3637 6.238076 CCATCTTTGTAAACTTTGGTGCAAAC 60.238 38.462 0.00 0.00 0.00 2.93
3649 3716 9.072375 TGTACATTTCCAGTTACAAAATGATGA 57.928 29.630 18.02 6.44 40.97 2.92
3720 3788 0.038709 ACTGCAGACACTTCTCTCGC 60.039 55.000 23.35 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.