Multiple sequence alignment - TraesCS3B01G143700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G143700 chr3B 100.000 3890 0 0 1 3890 132524682 132520793 0.000000e+00 7184.0
1 TraesCS3B01G143700 chr3B 87.166 187 20 3 80 265 665476111 665475928 3.940000e-50 209.0
2 TraesCS3B01G143700 chr3B 79.618 157 28 3 924 1079 133091774 133091621 4.110000e-20 110.0
3 TraesCS3B01G143700 chr3D 94.866 3331 131 14 590 3890 84106979 84110299 0.000000e+00 5168.0
4 TraesCS3B01G143700 chr3D 94.238 3315 143 16 603 3890 84115740 84119033 0.000000e+00 5020.0
5 TraesCS3B01G143700 chr3D 84.466 206 25 3 63 262 496740134 496739930 3.070000e-46 196.0
6 TraesCS3B01G143700 chr3D 84.058 207 24 4 59 258 333287649 333287853 1.430000e-44 191.0
7 TraesCS3B01G143700 chr3A 95.257 2530 103 7 841 3370 100429779 100432291 0.000000e+00 3991.0
8 TraesCS3B01G143700 chr3A 94.487 2594 104 10 1298 3890 100415324 100417879 0.000000e+00 3962.0
9 TraesCS3B01G143700 chr3A 88.177 702 52 7 620 1300 100408614 100409305 0.000000e+00 808.0
10 TraesCS3B01G143700 chr3A 94.503 473 19 1 3425 3890 100432292 100432764 0.000000e+00 723.0
11 TraesCS3B01G143700 chr3A 78.840 293 40 19 603 888 100429510 100429787 1.110000e-40 178.0
12 TraesCS3B01G143700 chr3A 94.366 71 4 0 3775 3845 217820150 217820220 4.110000e-20 110.0
13 TraesCS3B01G143700 chr2A 88.718 195 16 1 59 247 663656582 663656388 2.340000e-57 233.0
14 TraesCS3B01G143700 chr6A 87.143 210 19 3 59 262 108925574 108925781 8.410000e-57 231.0
15 TraesCS3B01G143700 chr7D 87.192 203 19 2 59 255 102965036 102964835 1.410000e-54 224.0
16 TraesCS3B01G143700 chr1D 93.421 152 9 1 80 231 359996512 359996662 1.410000e-54 224.0
17 TraesCS3B01G143700 chr1D 90.000 130 12 1 259 387 336556678 336556807 2.400000e-37 167.0
18 TraesCS3B01G143700 chrUn 89.266 177 18 1 87 262 134378405 134378581 1.820000e-53 220.0
19 TraesCS3B01G143700 chr2B 85.572 201 23 1 55 249 263140601 263140401 5.090000e-49 206.0
20 TraesCS3B01G143700 chr2B 90.551 127 11 1 260 385 622120726 622120600 2.400000e-37 167.0
21 TraesCS3B01G143700 chr2B 90.000 90 9 0 3779 3868 633391676 633391587 2.460000e-22 117.0
22 TraesCS3B01G143700 chr2B 91.463 82 7 0 3775 3856 247368619 247368538 3.180000e-21 113.0
23 TraesCS3B01G143700 chr1A 85.714 196 21 2 59 248 368368668 368368474 2.370000e-47 200.0
24 TraesCS3B01G143700 chr5B 90.625 128 11 1 260 386 560436744 560436871 6.680000e-38 169.0
25 TraesCS3B01G143700 chr5B 90.323 124 11 1 260 382 629432352 629432475 1.120000e-35 161.0
26 TraesCS3B01G143700 chr6B 90.551 127 11 1 260 385 203130296 203130422 2.400000e-37 167.0
27 TraesCS3B01G143700 chr1B 90.476 126 11 1 260 384 198979108 198979233 8.650000e-37 165.0
28 TraesCS3B01G143700 chr1B 88.372 86 9 1 3771 3856 597156804 597156888 6.880000e-18 102.0
29 TraesCS3B01G143700 chr4B 89.764 127 12 1 260 385 199990593 199990719 1.120000e-35 161.0
30 TraesCS3B01G143700 chr4B 89.764 127 12 1 260 385 454565325 454565451 1.120000e-35 161.0
31 TraesCS3B01G143700 chr4B 90.323 124 11 1 260 382 487399833 487399956 1.120000e-35 161.0
32 TraesCS3B01G143700 chr4A 92.683 82 6 0 3775 3856 697388808 697388889 6.830000e-23 119.0
33 TraesCS3B01G143700 chr2D 86.957 92 7 4 3777 3863 73569833 73569924 8.890000e-17 99.0
34 TraesCS3B01G143700 chr5A 80.469 128 22 3 260 385 417902826 417902700 1.150000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G143700 chr3B 132520793 132524682 3889 True 7184.000000 7184 100.000000 1 3890 1 chr3B.!!$R1 3889
1 TraesCS3B01G143700 chr3D 84106979 84110299 3320 False 5168.000000 5168 94.866000 590 3890 1 chr3D.!!$F1 3300
2 TraesCS3B01G143700 chr3D 84115740 84119033 3293 False 5020.000000 5020 94.238000 603 3890 1 chr3D.!!$F2 3287
3 TraesCS3B01G143700 chr3A 100415324 100417879 2555 False 3962.000000 3962 94.487000 1298 3890 1 chr3A.!!$F2 2592
4 TraesCS3B01G143700 chr3A 100429510 100432764 3254 False 1630.666667 3991 89.533333 603 3890 3 chr3A.!!$F4 3287
5 TraesCS3B01G143700 chr3A 100408614 100409305 691 False 808.000000 808 88.177000 620 1300 1 chr3A.!!$F1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 857 0.029433 TCAATCTCGTCGGCTGATCG 59.971 55.0 0.0 4.81 0.00 3.69 F
1197 1264 0.531532 GCTCGCTGGTGCTCATGTAT 60.532 55.0 0.0 0.00 36.97 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2430 2497 1.146263 CCTAAGCCACCGGACATCC 59.854 63.158 9.46 0.0 0.0 3.51 R
3039 3106 1.541588 GGCTTCCATTGGTGTGAGAAC 59.458 52.381 1.86 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.974980 ATGTCATAAAAATAAAACGGTGAAAGT 57.025 25.926 0.00 0.00 0.00 2.66
40 41 9.804758 TGTCATAAAAATAAAACGGTGAAAGTT 57.195 25.926 0.00 0.00 0.00 2.66
42 43 8.756864 TCATAAAAATAAAACGGTGAAAGTTGC 58.243 29.630 0.00 0.00 31.43 4.17
43 44 6.969828 AAAAATAAAACGGTGAAAGTTGCA 57.030 29.167 0.00 0.00 31.43 4.08
44 45 7.546778 AAAAATAAAACGGTGAAAGTTGCAT 57.453 28.000 0.00 0.00 31.43 3.96
45 46 6.523676 AAATAAAACGGTGAAAGTTGCATG 57.476 33.333 0.00 0.00 31.43 4.06
46 47 3.518634 AAAACGGTGAAAGTTGCATGT 57.481 38.095 0.00 0.00 31.43 3.21
47 48 2.774439 AACGGTGAAAGTTGCATGTC 57.226 45.000 0.00 0.00 0.00 3.06
48 49 1.674359 ACGGTGAAAGTTGCATGTCA 58.326 45.000 0.00 0.00 0.00 3.58
49 50 2.020720 ACGGTGAAAGTTGCATGTCAA 58.979 42.857 0.00 0.00 0.00 3.18
50 51 2.622942 ACGGTGAAAGTTGCATGTCAAT 59.377 40.909 5.97 0.00 36.99 2.57
51 52 3.818210 ACGGTGAAAGTTGCATGTCAATA 59.182 39.130 5.97 0.00 36.99 1.90
52 53 4.458989 ACGGTGAAAGTTGCATGTCAATAT 59.541 37.500 5.97 0.00 36.99 1.28
53 54 4.794762 CGGTGAAAGTTGCATGTCAATATG 59.205 41.667 5.97 0.00 36.99 1.78
62 63 3.263602 CATGTCAATATGCTTGCTCCG 57.736 47.619 0.00 0.00 0.00 4.63
63 64 2.401583 TGTCAATATGCTTGCTCCGT 57.598 45.000 0.00 0.00 0.00 4.69
64 65 2.710377 TGTCAATATGCTTGCTCCGTT 58.290 42.857 0.00 0.00 0.00 4.44
65 66 2.677836 TGTCAATATGCTTGCTCCGTTC 59.322 45.455 0.00 0.00 0.00 3.95
66 67 2.032178 GTCAATATGCTTGCTCCGTTCC 59.968 50.000 0.00 0.00 0.00 3.62
67 68 2.092968 TCAATATGCTTGCTCCGTTCCT 60.093 45.455 0.00 0.00 0.00 3.36
68 69 3.133901 TCAATATGCTTGCTCCGTTCCTA 59.866 43.478 0.00 0.00 0.00 2.94
69 70 3.838244 ATATGCTTGCTCCGTTCCTAA 57.162 42.857 0.00 0.00 0.00 2.69
70 71 2.489938 ATGCTTGCTCCGTTCCTAAA 57.510 45.000 0.00 0.00 0.00 1.85
71 72 2.489938 TGCTTGCTCCGTTCCTAAAT 57.510 45.000 0.00 0.00 0.00 1.40
72 73 3.620427 TGCTTGCTCCGTTCCTAAATA 57.380 42.857 0.00 0.00 0.00 1.40
73 74 3.267483 TGCTTGCTCCGTTCCTAAATAC 58.733 45.455 0.00 0.00 0.00 1.89
74 75 3.055385 TGCTTGCTCCGTTCCTAAATACT 60.055 43.478 0.00 0.00 0.00 2.12
75 76 3.556365 GCTTGCTCCGTTCCTAAATACTC 59.444 47.826 0.00 0.00 0.00 2.59
76 77 3.814005 TGCTCCGTTCCTAAATACTCC 57.186 47.619 0.00 0.00 0.00 3.85
77 78 2.433239 TGCTCCGTTCCTAAATACTCCC 59.567 50.000 0.00 0.00 0.00 4.30
78 79 2.699321 GCTCCGTTCCTAAATACTCCCT 59.301 50.000 0.00 0.00 0.00 4.20
79 80 3.243805 GCTCCGTTCCTAAATACTCCCTC 60.244 52.174 0.00 0.00 0.00 4.30
80 81 4.216708 CTCCGTTCCTAAATACTCCCTCT 58.783 47.826 0.00 0.00 0.00 3.69
81 82 5.383476 CTCCGTTCCTAAATACTCCCTCTA 58.617 45.833 0.00 0.00 0.00 2.43
82 83 5.769835 TCCGTTCCTAAATACTCCCTCTAA 58.230 41.667 0.00 0.00 0.00 2.10
83 84 6.197168 TCCGTTCCTAAATACTCCCTCTAAA 58.803 40.000 0.00 0.00 0.00 1.85
84 85 6.842807 TCCGTTCCTAAATACTCCCTCTAAAT 59.157 38.462 0.00 0.00 0.00 1.40
85 86 8.006564 TCCGTTCCTAAATACTCCCTCTAAATA 58.993 37.037 0.00 0.00 0.00 1.40
86 87 8.813951 CCGTTCCTAAATACTCCCTCTAAATAT 58.186 37.037 0.00 0.00 0.00 1.28
113 114 9.490379 TTGTCTTCTTAGAGACTTTAAATGGAC 57.510 33.333 6.59 0.00 44.99 4.02
114 115 8.871125 TGTCTTCTTAGAGACTTTAAATGGACT 58.129 33.333 6.59 0.00 44.99 3.85
124 125 8.873215 AGACTTTAAATGGACTATCACATACG 57.127 34.615 0.00 0.00 0.00 3.06
125 126 8.692710 AGACTTTAAATGGACTATCACATACGA 58.307 33.333 0.00 0.00 0.00 3.43
126 127 8.873215 ACTTTAAATGGACTATCACATACGAG 57.127 34.615 0.00 0.00 0.00 4.18
127 128 8.475639 ACTTTAAATGGACTATCACATACGAGT 58.524 33.333 0.00 0.00 0.00 4.18
128 129 8.642908 TTTAAATGGACTATCACATACGAGTG 57.357 34.615 0.00 0.00 40.85 3.51
129 130 5.854010 AATGGACTATCACATACGAGTGT 57.146 39.130 0.00 0.00 40.37 3.55
130 131 6.954487 AATGGACTATCACATACGAGTGTA 57.046 37.500 0.00 0.00 40.37 2.90
131 132 7.526142 AATGGACTATCACATACGAGTGTAT 57.474 36.000 0.00 0.00 42.03 2.29
132 133 8.631480 AATGGACTATCACATACGAGTGTATA 57.369 34.615 0.00 0.00 39.28 1.47
133 134 8.809468 ATGGACTATCACATACGAGTGTATAT 57.191 34.615 0.00 0.00 39.28 0.86
134 135 9.901172 ATGGACTATCACATACGAGTGTATATA 57.099 33.333 0.00 0.00 39.28 0.86
135 136 9.379791 TGGACTATCACATACGAGTGTATATAG 57.620 37.037 15.96 15.96 39.28 1.31
136 137 9.597170 GGACTATCACATACGAGTGTATATAGA 57.403 37.037 20.09 8.02 39.28 1.98
138 139 9.939802 ACTATCACATACGAGTGTATATAGACA 57.060 33.333 12.18 0.00 39.28 3.41
171 172 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
172 173 6.712095 AGTGTAGATTCACTCATTTTGCTTCA 59.288 34.615 0.00 0.00 44.07 3.02
173 174 7.392673 AGTGTAGATTCACTCATTTTGCTTCAT 59.607 33.333 0.00 0.00 44.07 2.57
174 175 8.668353 GTGTAGATTCACTCATTTTGCTTCATA 58.332 33.333 0.00 0.00 35.68 2.15
175 176 9.399797 TGTAGATTCACTCATTTTGCTTCATAT 57.600 29.630 0.00 0.00 0.00 1.78
176 177 9.661187 GTAGATTCACTCATTTTGCTTCATATG 57.339 33.333 0.00 0.00 0.00 1.78
177 178 8.289939 AGATTCACTCATTTTGCTTCATATGT 57.710 30.769 1.90 0.00 0.00 2.29
178 179 9.399797 AGATTCACTCATTTTGCTTCATATGTA 57.600 29.630 1.90 0.00 0.00 2.29
179 180 9.661187 GATTCACTCATTTTGCTTCATATGTAG 57.339 33.333 5.04 5.04 0.00 2.74
180 181 8.565896 TTCACTCATTTTGCTTCATATGTAGT 57.434 30.769 10.61 0.00 0.00 2.73
181 182 8.201554 TCACTCATTTTGCTTCATATGTAGTC 57.798 34.615 10.61 4.54 0.00 2.59
182 183 7.823799 TCACTCATTTTGCTTCATATGTAGTCA 59.176 33.333 10.61 6.75 0.00 3.41
183 184 7.907045 CACTCATTTTGCTTCATATGTAGTCAC 59.093 37.037 10.61 0.00 0.00 3.67
184 185 7.066284 ACTCATTTTGCTTCATATGTAGTCACC 59.934 37.037 10.61 0.00 0.00 4.02
185 186 7.112122 TCATTTTGCTTCATATGTAGTCACCT 58.888 34.615 10.61 0.00 0.00 4.00
186 187 6.741992 TTTTGCTTCATATGTAGTCACCTG 57.258 37.500 10.61 0.00 0.00 4.00
187 188 5.420725 TTGCTTCATATGTAGTCACCTGT 57.579 39.130 10.61 0.00 0.00 4.00
188 189 5.420725 TGCTTCATATGTAGTCACCTGTT 57.579 39.130 10.61 0.00 0.00 3.16
189 190 5.178061 TGCTTCATATGTAGTCACCTGTTG 58.822 41.667 10.61 0.00 0.00 3.33
190 191 5.046663 TGCTTCATATGTAGTCACCTGTTGA 60.047 40.000 10.61 0.00 0.00 3.18
191 192 5.874810 GCTTCATATGTAGTCACCTGTTGAA 59.125 40.000 10.61 0.00 35.39 2.69
192 193 6.371548 GCTTCATATGTAGTCACCTGTTGAAA 59.628 38.462 10.61 0.00 35.39 2.69
193 194 7.066284 GCTTCATATGTAGTCACCTGTTGAAAT 59.934 37.037 10.61 0.00 35.39 2.17
194 195 8.492673 TTCATATGTAGTCACCTGTTGAAATC 57.507 34.615 1.90 0.00 35.39 2.17
195 196 7.851228 TCATATGTAGTCACCTGTTGAAATCT 58.149 34.615 1.90 0.00 35.39 2.40
196 197 7.981789 TCATATGTAGTCACCTGTTGAAATCTC 59.018 37.037 1.90 0.00 35.39 2.75
197 198 5.808366 TGTAGTCACCTGTTGAAATCTCT 57.192 39.130 0.00 0.00 35.39 3.10
198 199 6.911250 TGTAGTCACCTGTTGAAATCTCTA 57.089 37.500 0.00 0.00 35.39 2.43
199 200 7.297936 TGTAGTCACCTGTTGAAATCTCTAA 57.702 36.000 0.00 0.00 35.39 2.10
200 201 7.732025 TGTAGTCACCTGTTGAAATCTCTAAA 58.268 34.615 0.00 0.00 35.39 1.85
201 202 8.208224 TGTAGTCACCTGTTGAAATCTCTAAAA 58.792 33.333 0.00 0.00 35.39 1.52
202 203 9.052759 GTAGTCACCTGTTGAAATCTCTAAAAA 57.947 33.333 0.00 0.00 35.39 1.94
203 204 8.159344 AGTCACCTGTTGAAATCTCTAAAAAG 57.841 34.615 0.00 0.00 35.39 2.27
204 205 7.993183 AGTCACCTGTTGAAATCTCTAAAAAGA 59.007 33.333 0.00 0.00 35.39 2.52
205 206 8.070769 GTCACCTGTTGAAATCTCTAAAAAGAC 58.929 37.037 0.00 0.00 35.39 3.01
206 207 7.773224 TCACCTGTTGAAATCTCTAAAAAGACA 59.227 33.333 0.00 0.00 0.00 3.41
207 208 8.405531 CACCTGTTGAAATCTCTAAAAAGACAA 58.594 33.333 0.00 0.00 0.00 3.18
208 209 8.966868 ACCTGTTGAAATCTCTAAAAAGACAAA 58.033 29.630 0.00 0.00 0.00 2.83
209 210 9.971922 CCTGTTGAAATCTCTAAAAAGACAAAT 57.028 29.630 0.00 0.00 0.00 2.32
272 273 7.935338 TTAATATGAAATACTCCGTTCGTCC 57.065 36.000 0.00 0.00 0.00 4.79
273 274 2.660189 TGAAATACTCCGTTCGTCCC 57.340 50.000 0.00 0.00 0.00 4.46
274 275 1.894466 TGAAATACTCCGTTCGTCCCA 59.106 47.619 0.00 0.00 0.00 4.37
275 276 2.299582 TGAAATACTCCGTTCGTCCCAA 59.700 45.455 0.00 0.00 0.00 4.12
276 277 2.667473 AATACTCCGTTCGTCCCAAG 57.333 50.000 0.00 0.00 0.00 3.61
277 278 1.843368 ATACTCCGTTCGTCCCAAGA 58.157 50.000 0.00 0.00 0.00 3.02
278 279 1.843368 TACTCCGTTCGTCCCAAGAT 58.157 50.000 0.00 0.00 0.00 2.40
279 280 0.974383 ACTCCGTTCGTCCCAAGATT 59.026 50.000 0.00 0.00 0.00 2.40
280 281 1.346722 ACTCCGTTCGTCCCAAGATTT 59.653 47.619 0.00 0.00 0.00 2.17
281 282 2.224450 ACTCCGTTCGTCCCAAGATTTT 60.224 45.455 0.00 0.00 0.00 1.82
282 283 2.812011 CTCCGTTCGTCCCAAGATTTTT 59.188 45.455 0.00 0.00 0.00 1.94
283 284 2.550606 TCCGTTCGTCCCAAGATTTTTG 59.449 45.455 0.00 0.00 0.00 2.44
284 285 2.292292 CCGTTCGTCCCAAGATTTTTGT 59.708 45.455 0.00 0.00 0.00 2.83
285 286 3.551551 CGTTCGTCCCAAGATTTTTGTC 58.448 45.455 0.00 0.00 0.00 3.18
286 287 3.250040 CGTTCGTCCCAAGATTTTTGTCT 59.750 43.478 0.00 0.00 0.00 3.41
287 288 4.261031 CGTTCGTCCCAAGATTTTTGTCTT 60.261 41.667 0.00 0.00 38.95 3.01
288 289 5.049954 CGTTCGTCCCAAGATTTTTGTCTTA 60.050 40.000 0.00 0.00 36.33 2.10
289 290 6.512091 CGTTCGTCCCAAGATTTTTGTCTTAA 60.512 38.462 0.00 0.00 36.33 1.85
290 291 6.945938 TCGTCCCAAGATTTTTGTCTTAAA 57.054 33.333 0.00 0.00 36.33 1.52
291 292 7.519032 TCGTCCCAAGATTTTTGTCTTAAAT 57.481 32.000 0.00 0.00 36.33 1.40
292 293 7.947282 TCGTCCCAAGATTTTTGTCTTAAATT 58.053 30.769 0.00 0.00 36.33 1.82
293 294 8.417884 TCGTCCCAAGATTTTTGTCTTAAATTT 58.582 29.630 0.00 0.00 36.33 1.82
294 295 9.040939 CGTCCCAAGATTTTTGTCTTAAATTTT 57.959 29.630 0.00 0.00 36.33 1.82
340 341 9.819267 AGTTAAGCTTTAGTGTTAGATACATCC 57.181 33.333 3.20 0.00 39.39 3.51
341 342 9.595823 GTTAAGCTTTAGTGTTAGATACATCCA 57.404 33.333 3.20 0.00 39.39 3.41
361 362 9.147732 ACATCCATATCTAGACAATGTAAGACA 57.852 33.333 13.29 0.00 0.00 3.41
362 363 9.987272 CATCCATATCTAGACAATGTAAGACAA 57.013 33.333 13.29 0.00 0.00 3.18
364 365 9.421399 TCCATATCTAGACAATGTAAGACAAGA 57.579 33.333 13.29 2.13 0.00 3.02
371 372 9.831737 CTAGACAATGTAAGACAAGAATTTTGG 57.168 33.333 0.00 0.00 0.00 3.28
372 373 7.661040 AGACAATGTAAGACAAGAATTTTGGG 58.339 34.615 0.00 0.00 0.00 4.12
373 374 7.505585 AGACAATGTAAGACAAGAATTTTGGGA 59.494 33.333 0.00 0.00 0.00 4.37
374 375 7.433680 ACAATGTAAGACAAGAATTTTGGGAC 58.566 34.615 0.00 0.00 0.00 4.46
375 376 6.590234 ATGTAAGACAAGAATTTTGGGACC 57.410 37.500 5.68 0.00 0.00 4.46
376 377 4.517453 TGTAAGACAAGAATTTTGGGACCG 59.483 41.667 5.68 0.00 0.00 4.79
377 378 3.502123 AGACAAGAATTTTGGGACCGA 57.498 42.857 0.00 0.00 0.00 4.69
378 379 3.412386 AGACAAGAATTTTGGGACCGAG 58.588 45.455 0.00 0.00 0.00 4.63
379 380 2.488153 GACAAGAATTTTGGGACCGAGG 59.512 50.000 0.00 0.00 0.00 4.63
380 381 1.818674 CAAGAATTTTGGGACCGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
381 382 1.368374 AGAATTTTGGGACCGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
382 383 1.708551 AGAATTTTGGGACCGAGGGAA 59.291 47.619 0.00 0.00 0.00 3.97
383 384 2.311841 AGAATTTTGGGACCGAGGGAAT 59.688 45.455 0.00 0.00 0.00 3.01
384 385 3.526019 AGAATTTTGGGACCGAGGGAATA 59.474 43.478 0.00 0.00 0.00 1.75
385 386 4.168088 AGAATTTTGGGACCGAGGGAATAT 59.832 41.667 0.00 0.00 0.00 1.28
386 387 5.371472 AGAATTTTGGGACCGAGGGAATATA 59.629 40.000 0.00 0.00 0.00 0.86
387 388 5.860648 ATTTTGGGACCGAGGGAATATAT 57.139 39.130 0.00 0.00 0.00 0.86
388 389 6.963117 ATTTTGGGACCGAGGGAATATATA 57.037 37.500 0.00 0.00 0.00 0.86
389 390 6.963117 TTTTGGGACCGAGGGAATATATAT 57.037 37.500 0.00 0.00 0.00 0.86
390 391 5.950544 TTGGGACCGAGGGAATATATATG 57.049 43.478 0.00 0.00 0.00 1.78
391 392 5.215266 TGGGACCGAGGGAATATATATGA 57.785 43.478 0.00 0.00 0.00 2.15
392 393 5.595770 TGGGACCGAGGGAATATATATGAA 58.404 41.667 0.00 0.00 0.00 2.57
393 394 5.661312 TGGGACCGAGGGAATATATATGAAG 59.339 44.000 0.00 0.00 0.00 3.02
394 395 5.453480 GGGACCGAGGGAATATATATGAAGC 60.453 48.000 0.00 0.00 0.00 3.86
395 396 5.128827 GGACCGAGGGAATATATATGAAGCA 59.871 44.000 0.00 0.00 0.00 3.91
396 397 6.351881 GGACCGAGGGAATATATATGAAGCAA 60.352 42.308 0.00 0.00 0.00 3.91
397 398 7.016153 ACCGAGGGAATATATATGAAGCAAA 57.984 36.000 0.00 0.00 0.00 3.68
398 399 7.458397 ACCGAGGGAATATATATGAAGCAAAA 58.542 34.615 0.00 0.00 0.00 2.44
399 400 8.109634 ACCGAGGGAATATATATGAAGCAAAAT 58.890 33.333 0.00 0.00 0.00 1.82
400 401 8.400947 CCGAGGGAATATATATGAAGCAAAATG 58.599 37.037 0.00 0.00 0.00 2.32
401 402 9.166173 CGAGGGAATATATATGAAGCAAAATGA 57.834 33.333 0.00 0.00 0.00 2.57
415 416 9.932207 TGAAGCAAAATGAATGAATGTAAATCT 57.068 25.926 0.00 0.00 0.00 2.40
437 438 9.661187 AATCTAAACTACGTCTATGTACATTCG 57.339 33.333 14.77 17.44 0.00 3.34
438 439 8.201554 TCTAAACTACGTCTATGTACATTCGT 57.798 34.615 24.82 24.82 35.73 3.85
439 440 9.313118 TCTAAACTACGTCTATGTACATTCGTA 57.687 33.333 24.55 24.55 33.70 3.43
442 443 7.126726 ACTACGTCTATGTACATTCGTATCC 57.873 40.000 25.45 7.63 34.28 2.59
443 444 5.027206 ACGTCTATGTACATTCGTATCCG 57.973 43.478 22.27 14.46 0.00 4.18
444 445 4.512944 ACGTCTATGTACATTCGTATCCGT 59.487 41.667 22.27 14.92 35.01 4.69
445 446 5.696270 ACGTCTATGTACATTCGTATCCGTA 59.304 40.000 22.27 0.95 35.01 4.02
446 447 6.369890 ACGTCTATGTACATTCGTATCCGTAT 59.630 38.462 22.27 5.25 35.01 3.06
447 448 6.681599 CGTCTATGTACATTCGTATCCGTATG 59.318 42.308 14.77 0.00 44.48 2.39
448 449 6.468319 GTCTATGTACATTCGTATCCGTATGC 59.532 42.308 14.77 0.00 43.24 3.14
449 450 4.571372 TGTACATTCGTATCCGTATGCA 57.429 40.909 0.00 0.00 43.24 3.96
450 451 4.542735 TGTACATTCGTATCCGTATGCAG 58.457 43.478 0.00 0.00 43.24 4.41
451 452 3.728076 ACATTCGTATCCGTATGCAGT 57.272 42.857 0.00 0.00 43.24 4.40
452 453 3.381045 ACATTCGTATCCGTATGCAGTG 58.619 45.455 0.00 0.00 43.24 3.66
453 454 3.181479 ACATTCGTATCCGTATGCAGTGT 60.181 43.478 0.00 0.00 43.24 3.55
454 455 4.037089 ACATTCGTATCCGTATGCAGTGTA 59.963 41.667 0.00 0.00 43.24 2.90
455 456 4.635833 TTCGTATCCGTATGCAGTGTAA 57.364 40.909 0.00 0.00 35.01 2.41
456 457 4.635833 TCGTATCCGTATGCAGTGTAAA 57.364 40.909 0.00 0.00 35.01 2.01
457 458 5.190992 TCGTATCCGTATGCAGTGTAAAT 57.809 39.130 0.00 0.00 35.01 1.40
458 459 5.593968 TCGTATCCGTATGCAGTGTAAATT 58.406 37.500 0.00 0.00 35.01 1.82
459 460 5.460748 TCGTATCCGTATGCAGTGTAAATTG 59.539 40.000 0.00 0.00 35.01 2.32
460 461 5.333035 CGTATCCGTATGCAGTGTAAATTGG 60.333 44.000 0.00 0.00 0.00 3.16
461 462 4.209307 TCCGTATGCAGTGTAAATTGGA 57.791 40.909 0.00 0.00 0.00 3.53
462 463 4.580868 TCCGTATGCAGTGTAAATTGGAA 58.419 39.130 0.00 0.00 0.00 3.53
463 464 5.189928 TCCGTATGCAGTGTAAATTGGAAT 58.810 37.500 0.00 0.00 0.00 3.01
464 465 5.065859 TCCGTATGCAGTGTAAATTGGAATG 59.934 40.000 0.00 0.00 0.00 2.67
465 466 5.065859 CCGTATGCAGTGTAAATTGGAATGA 59.934 40.000 0.00 0.00 0.00 2.57
466 467 5.965334 CGTATGCAGTGTAAATTGGAATGAC 59.035 40.000 0.00 0.00 0.00 3.06
467 468 6.183360 CGTATGCAGTGTAAATTGGAATGACT 60.183 38.462 0.00 0.00 0.00 3.41
468 469 7.011016 CGTATGCAGTGTAAATTGGAATGACTA 59.989 37.037 0.00 0.00 0.00 2.59
469 470 7.701539 ATGCAGTGTAAATTGGAATGACTAA 57.298 32.000 0.00 0.00 0.00 2.24
470 471 7.517614 TGCAGTGTAAATTGGAATGACTAAA 57.482 32.000 0.00 0.00 0.00 1.85
471 472 7.946207 TGCAGTGTAAATTGGAATGACTAAAA 58.054 30.769 0.00 0.00 0.00 1.52
472 473 8.417106 TGCAGTGTAAATTGGAATGACTAAAAA 58.583 29.630 0.00 0.00 0.00 1.94
473 474 8.915654 GCAGTGTAAATTGGAATGACTAAAAAG 58.084 33.333 0.00 0.00 0.00 2.27
476 477 9.959749 GTGTAAATTGGAATGACTAAAAAGACA 57.040 29.630 0.00 0.00 0.00 3.41
524 525 4.821589 GGTGGCGAGGAAGGCGAG 62.822 72.222 0.00 0.00 39.82 5.03
525 526 4.821589 GTGGCGAGGAAGGCGAGG 62.822 72.222 0.00 0.00 39.82 4.63
558 559 2.472934 CGTGTACGCGAAAAGGGC 59.527 61.111 23.95 0.00 36.05 5.19
559 560 2.025418 CGTGTACGCGAAAAGGGCT 61.025 57.895 23.95 0.00 36.05 5.19
560 561 0.733566 CGTGTACGCGAAAAGGGCTA 60.734 55.000 23.95 0.00 36.05 3.93
561 562 1.431496 GTGTACGCGAAAAGGGCTAA 58.569 50.000 15.93 0.00 36.05 3.09
562 563 1.392510 GTGTACGCGAAAAGGGCTAAG 59.607 52.381 15.93 0.00 36.05 2.18
563 564 0.372679 GTACGCGAAAAGGGCTAAGC 59.627 55.000 15.93 0.00 36.05 3.09
564 565 2.399611 CGCGAAAAGGGCTAAGCG 59.600 61.111 0.00 0.00 41.56 4.68
565 566 3.884900 GCGAAAAGGGCTAAGCGA 58.115 55.556 0.00 0.00 0.00 4.93
566 567 2.168054 GCGAAAAGGGCTAAGCGAA 58.832 52.632 0.00 0.00 0.00 4.70
567 568 0.097150 GCGAAAAGGGCTAAGCGAAG 59.903 55.000 0.00 0.00 0.00 3.79
568 569 1.439679 CGAAAAGGGCTAAGCGAAGT 58.560 50.000 0.00 0.00 0.00 3.01
569 570 1.393883 CGAAAAGGGCTAAGCGAAGTC 59.606 52.381 0.00 0.00 0.00 3.01
570 571 2.701107 GAAAAGGGCTAAGCGAAGTCT 58.299 47.619 0.00 0.00 0.00 3.24
571 572 2.861147 AAAGGGCTAAGCGAAGTCTT 57.139 45.000 0.00 0.00 0.00 3.01
572 573 2.388310 AAGGGCTAAGCGAAGTCTTC 57.612 50.000 2.18 2.18 0.00 2.87
573 574 1.267121 AGGGCTAAGCGAAGTCTTCA 58.733 50.000 12.99 0.00 0.00 3.02
574 575 1.623811 AGGGCTAAGCGAAGTCTTCAA 59.376 47.619 12.99 0.00 0.00 2.69
575 576 2.237392 AGGGCTAAGCGAAGTCTTCAAT 59.763 45.455 12.99 0.87 0.00 2.57
576 577 2.609916 GGGCTAAGCGAAGTCTTCAATC 59.390 50.000 12.99 1.54 0.00 2.67
577 578 2.609916 GGCTAAGCGAAGTCTTCAATCC 59.390 50.000 12.99 1.47 0.00 3.01
578 579 2.609916 GCTAAGCGAAGTCTTCAATCCC 59.390 50.000 12.99 0.00 0.00 3.85
579 580 1.726853 AAGCGAAGTCTTCAATCCCG 58.273 50.000 12.99 0.00 0.00 5.14
580 581 0.108138 AGCGAAGTCTTCAATCCCGG 60.108 55.000 12.99 0.00 0.00 5.73
581 582 0.108329 GCGAAGTCTTCAATCCCGGA 60.108 55.000 12.99 0.00 0.00 5.14
582 583 1.473434 GCGAAGTCTTCAATCCCGGAT 60.473 52.381 12.99 0.00 0.00 4.18
583 584 2.223971 GCGAAGTCTTCAATCCCGGATA 60.224 50.000 12.99 0.00 0.00 2.59
584 585 3.740141 GCGAAGTCTTCAATCCCGGATAA 60.740 47.826 12.99 0.00 0.00 1.75
585 586 4.051922 CGAAGTCTTCAATCCCGGATAAG 58.948 47.826 12.99 1.99 0.00 1.73
586 587 4.202121 CGAAGTCTTCAATCCCGGATAAGA 60.202 45.833 12.99 8.13 0.00 2.10
587 588 5.671493 GAAGTCTTCAATCCCGGATAAGAA 58.329 41.667 12.43 12.38 0.00 2.52
588 589 5.693769 AGTCTTCAATCCCGGATAAGAAA 57.306 39.130 12.43 4.69 0.00 2.52
593 594 6.598064 TCTTCAATCCCGGATAAGAAAAAGTC 59.402 38.462 0.73 0.00 0.00 3.01
597 598 5.492855 TCCCGGATAAGAAAAAGTCTTCA 57.507 39.130 0.73 0.00 43.49 3.02
700 701 4.039357 CGACCACGTCCAGCGACT 62.039 66.667 0.00 0.00 44.77 4.18
791 816 4.735132 GTAGACCAGGCGTGCGCA 62.735 66.667 18.36 5.66 44.11 6.09
812 840 3.569210 CCACCCCCAGTGCAGTCA 61.569 66.667 0.00 0.00 45.83 3.41
829 857 0.029433 TCAATCTCGTCGGCTGATCG 59.971 55.000 0.00 4.81 0.00 3.69
881 909 4.060658 CGGTTAACGCGACGATGA 57.939 55.556 15.93 0.00 34.82 2.92
897 964 4.357947 GACGCGGTGAGGAGTGCA 62.358 66.667 12.47 0.00 0.00 4.57
898 965 3.858868 GACGCGGTGAGGAGTGCAA 62.859 63.158 12.47 0.00 0.00 4.08
1020 1087 4.132441 CCCTTGCGGGCGTACGTA 62.132 66.667 17.90 0.00 45.33 3.57
1059 1126 2.989824 AGGCCTGACGCGTACACT 60.990 61.111 13.97 3.38 38.94 3.55
1130 1197 2.685017 TGCCGGAGATGCTGTCCT 60.685 61.111 5.05 0.00 31.14 3.85
1197 1264 0.531532 GCTCGCTGGTGCTCATGTAT 60.532 55.000 0.00 0.00 36.97 2.29
1200 1267 1.091197 CGCTGGTGCTCATGTATGCA 61.091 55.000 0.00 0.00 36.97 3.96
1247 1314 1.153489 CGCTACTGGATGTGCAGCT 60.153 57.895 1.14 0.00 30.25 4.24
1287 1354 1.154413 CGTTGTGTGGAATGCGCTC 60.154 57.895 9.73 0.00 0.00 5.03
1340 1407 1.817357 CTGTCATGCTGCTCTTTCCA 58.183 50.000 0.00 0.00 0.00 3.53
1533 1600 1.078848 GTGTGGCGAGATGGAAGCT 60.079 57.895 0.00 0.00 30.44 3.74
1617 1684 4.903049 TCTGGGTTTGTAAGACTAGGTCAA 59.097 41.667 0.00 0.00 34.60 3.18
1631 1698 1.347707 AGGTCAAGTTGATCGAGCCAA 59.652 47.619 9.18 0.00 31.44 4.52
1842 1909 0.761802 CAGGGGAGTGGGCTAGAATC 59.238 60.000 0.00 0.00 0.00 2.52
1866 1933 4.627611 CATGAACAGACATGGGATCAAC 57.372 45.455 0.00 0.00 42.45 3.18
1911 1978 5.584251 TGCGCTCATAGACATGTATTCAAAA 59.416 36.000 9.73 0.00 33.57 2.44
1983 2050 5.123936 AGAGATAAATTTACTTGGACCGCC 58.876 41.667 0.00 0.00 0.00 6.13
2124 2191 1.250328 CTCATGCTGGCTTGGTTGAA 58.750 50.000 8.26 0.00 0.00 2.69
2313 2380 1.303643 GCTGGCAGCTTGTAGGGTT 60.304 57.895 31.37 0.00 38.45 4.11
2351 2418 0.961019 GGTGAATTGGCAGCAGAACA 59.039 50.000 0.00 0.00 36.35 3.18
2430 2497 6.947733 TGTATGCAAAATCTAATAGATGGGGG 59.052 38.462 3.20 0.00 34.65 5.40
2731 2798 5.532557 CATTACTCGTATCAGAATCCAGCA 58.467 41.667 0.00 0.00 0.00 4.41
2806 2873 6.147492 TGCAATTAAATTGATCACCAAGTTGC 59.853 34.615 17.28 17.28 42.27 4.17
2894 2961 7.837863 TCTTGTAAGGACTATTGGTAACTCAG 58.162 38.462 0.00 0.00 37.61 3.35
3110 3177 5.269554 TCCCCAAACATCTTGGTCTAATT 57.730 39.130 3.00 0.00 37.88 1.40
3165 3232 3.058224 ACAGTTTGGCGCAACTTCTATTC 60.058 43.478 10.83 0.00 0.00 1.75
3173 3240 5.048083 TGGCGCAACTTCTATTCAAAGAAAT 60.048 36.000 10.83 0.00 35.14 2.17
3252 3319 0.607112 TTGCTCTGCTCCTCTGAGTG 59.393 55.000 3.66 0.00 41.28 3.51
3294 3361 7.725844 ACTGTTATTTGAGAGAGGTTCCAATTT 59.274 33.333 0.00 0.00 0.00 1.82
3451 3519 2.573369 GCCTGAAGCTGATGATCATGT 58.427 47.619 14.30 0.00 38.99 3.21
3686 3768 5.990408 AGTTGCTCAGTAAATCTTGAAACG 58.010 37.500 0.00 0.00 0.00 3.60
3736 3819 7.530010 AGACGCATTTATTTATATCATGGCAC 58.470 34.615 0.00 0.00 0.00 5.01
3753 3836 3.505680 TGGCACAAGTTATTCACACATCC 59.494 43.478 0.00 0.00 31.92 3.51
3820 3906 4.957372 CGTTTTTGCAGTTCAAATTGAAGC 59.043 37.500 8.88 10.44 43.53 3.86
3847 3933 9.562583 GCAAAAACGTCTTATATTTTGGTATGA 57.437 29.630 17.78 0.00 41.02 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.974980 ACTTTCACCGTTTTATTTTTATGACAT 57.025 25.926 0.00 0.00 0.00 3.06
14 15 9.804758 AACTTTCACCGTTTTATTTTTATGACA 57.195 25.926 0.00 0.00 0.00 3.58
16 17 8.756864 GCAACTTTCACCGTTTTATTTTTATGA 58.243 29.630 0.00 0.00 0.00 2.15
17 18 8.543774 TGCAACTTTCACCGTTTTATTTTTATG 58.456 29.630 0.00 0.00 0.00 1.90
18 19 8.649973 TGCAACTTTCACCGTTTTATTTTTAT 57.350 26.923 0.00 0.00 0.00 1.40
19 20 8.543774 CATGCAACTTTCACCGTTTTATTTTTA 58.456 29.630 0.00 0.00 0.00 1.52
20 21 6.969828 TGCAACTTTCACCGTTTTATTTTT 57.030 29.167 0.00 0.00 0.00 1.94
21 22 6.536941 ACATGCAACTTTCACCGTTTTATTTT 59.463 30.769 0.00 0.00 0.00 1.82
22 23 6.045955 ACATGCAACTTTCACCGTTTTATTT 58.954 32.000 0.00 0.00 0.00 1.40
23 24 5.596845 ACATGCAACTTTCACCGTTTTATT 58.403 33.333 0.00 0.00 0.00 1.40
24 25 5.195001 ACATGCAACTTTCACCGTTTTAT 57.805 34.783 0.00 0.00 0.00 1.40
25 26 4.096532 TGACATGCAACTTTCACCGTTTTA 59.903 37.500 0.00 0.00 0.00 1.52
26 27 3.119316 TGACATGCAACTTTCACCGTTTT 60.119 39.130 0.00 0.00 0.00 2.43
27 28 2.425312 TGACATGCAACTTTCACCGTTT 59.575 40.909 0.00 0.00 0.00 3.60
28 29 2.020720 TGACATGCAACTTTCACCGTT 58.979 42.857 0.00 0.00 0.00 4.44
29 30 1.674359 TGACATGCAACTTTCACCGT 58.326 45.000 0.00 0.00 0.00 4.83
30 31 2.772568 TTGACATGCAACTTTCACCG 57.227 45.000 0.00 0.00 0.00 4.94
42 43 2.615447 ACGGAGCAAGCATATTGACATG 59.385 45.455 0.00 0.00 0.00 3.21
43 44 2.923121 ACGGAGCAAGCATATTGACAT 58.077 42.857 0.00 0.00 0.00 3.06
44 45 2.401583 ACGGAGCAAGCATATTGACA 57.598 45.000 0.00 0.00 0.00 3.58
45 46 2.032178 GGAACGGAGCAAGCATATTGAC 59.968 50.000 0.00 0.00 0.00 3.18
46 47 2.092968 AGGAACGGAGCAAGCATATTGA 60.093 45.455 0.00 0.00 0.00 2.57
47 48 2.292267 AGGAACGGAGCAAGCATATTG 58.708 47.619 0.00 0.00 0.00 1.90
48 49 2.717639 AGGAACGGAGCAAGCATATT 57.282 45.000 0.00 0.00 0.00 1.28
49 50 3.838244 TTAGGAACGGAGCAAGCATAT 57.162 42.857 0.00 0.00 0.00 1.78
50 51 3.620427 TTTAGGAACGGAGCAAGCATA 57.380 42.857 0.00 0.00 0.00 3.14
51 52 2.489938 TTTAGGAACGGAGCAAGCAT 57.510 45.000 0.00 0.00 0.00 3.79
52 53 2.489938 ATTTAGGAACGGAGCAAGCA 57.510 45.000 0.00 0.00 0.00 3.91
53 54 3.532542 AGTATTTAGGAACGGAGCAAGC 58.467 45.455 0.00 0.00 0.00 4.01
54 55 4.120589 GGAGTATTTAGGAACGGAGCAAG 58.879 47.826 0.00 0.00 0.00 4.01
55 56 3.118519 GGGAGTATTTAGGAACGGAGCAA 60.119 47.826 0.00 0.00 0.00 3.91
56 57 2.433239 GGGAGTATTTAGGAACGGAGCA 59.567 50.000 0.00 0.00 0.00 4.26
57 58 2.699321 AGGGAGTATTTAGGAACGGAGC 59.301 50.000 0.00 0.00 0.00 4.70
58 59 4.216708 AGAGGGAGTATTTAGGAACGGAG 58.783 47.826 0.00 0.00 0.00 4.63
59 60 4.261411 AGAGGGAGTATTTAGGAACGGA 57.739 45.455 0.00 0.00 0.00 4.69
60 61 6.475596 TTTAGAGGGAGTATTTAGGAACGG 57.524 41.667 0.00 0.00 0.00 4.44
87 88 9.490379 GTCCATTTAAAGTCTCTAAGAAGACAA 57.510 33.333 6.79 0.00 46.65 3.18
88 89 8.871125 AGTCCATTTAAAGTCTCTAAGAAGACA 58.129 33.333 6.79 0.00 46.65 3.41
98 99 8.969267 CGTATGTGATAGTCCATTTAAAGTCTC 58.031 37.037 0.00 0.00 0.00 3.36
99 100 8.692710 TCGTATGTGATAGTCCATTTAAAGTCT 58.307 33.333 0.00 0.00 0.00 3.24
100 101 8.867112 TCGTATGTGATAGTCCATTTAAAGTC 57.133 34.615 0.00 0.00 0.00 3.01
101 102 8.475639 ACTCGTATGTGATAGTCCATTTAAAGT 58.524 33.333 0.00 0.00 0.00 2.66
102 103 8.755941 CACTCGTATGTGATAGTCCATTTAAAG 58.244 37.037 0.00 0.00 40.12 1.85
103 104 8.255206 ACACTCGTATGTGATAGTCCATTTAAA 58.745 33.333 11.46 0.00 40.12 1.52
104 105 7.778083 ACACTCGTATGTGATAGTCCATTTAA 58.222 34.615 11.46 0.00 40.12 1.52
105 106 7.342769 ACACTCGTATGTGATAGTCCATTTA 57.657 36.000 11.46 0.00 40.12 1.40
106 107 6.222038 ACACTCGTATGTGATAGTCCATTT 57.778 37.500 11.46 0.00 40.12 2.32
107 108 5.854010 ACACTCGTATGTGATAGTCCATT 57.146 39.130 11.46 0.00 40.12 3.16
108 109 8.809468 ATATACACTCGTATGTGATAGTCCAT 57.191 34.615 11.46 0.00 38.79 3.41
109 110 9.379791 CTATATACACTCGTATGTGATAGTCCA 57.620 37.037 11.46 0.00 38.79 4.02
110 111 9.597170 TCTATATACACTCGTATGTGATAGTCC 57.403 37.037 11.46 0.00 38.79 3.85
112 113 9.939802 TGTCTATATACACTCGTATGTGATAGT 57.060 33.333 11.46 0.00 38.79 2.12
148 149 6.902341 TGAAGCAAAATGAGTGAATCTACAC 58.098 36.000 0.00 0.00 40.60 2.90
149 150 7.692460 ATGAAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
150 151 9.661187 CATATGAAGCAAAATGAGTGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
151 152 9.399797 ACATATGAAGCAAAATGAGTGAATCTA 57.600 29.630 10.38 0.00 0.00 1.98
152 153 8.289939 ACATATGAAGCAAAATGAGTGAATCT 57.710 30.769 10.38 0.00 0.00 2.40
153 154 9.661187 CTACATATGAAGCAAAATGAGTGAATC 57.339 33.333 10.38 0.00 0.00 2.52
154 155 9.182214 ACTACATATGAAGCAAAATGAGTGAAT 57.818 29.630 10.38 0.00 0.00 2.57
155 156 8.565896 ACTACATATGAAGCAAAATGAGTGAA 57.434 30.769 10.38 0.00 0.00 3.18
156 157 7.823799 TGACTACATATGAAGCAAAATGAGTGA 59.176 33.333 10.38 0.00 0.00 3.41
157 158 7.907045 GTGACTACATATGAAGCAAAATGAGTG 59.093 37.037 10.38 0.00 0.00 3.51
158 159 7.066284 GGTGACTACATATGAAGCAAAATGAGT 59.934 37.037 10.38 0.00 0.00 3.41
159 160 7.281774 AGGTGACTACATATGAAGCAAAATGAG 59.718 37.037 10.38 0.00 40.61 2.90
160 161 7.066163 CAGGTGACTACATATGAAGCAAAATGA 59.934 37.037 10.38 0.00 40.21 2.57
161 162 7.148188 ACAGGTGACTACATATGAAGCAAAATG 60.148 37.037 10.38 2.81 40.21 2.32
162 163 6.886459 ACAGGTGACTACATATGAAGCAAAAT 59.114 34.615 10.38 0.00 40.21 1.82
163 164 6.237901 ACAGGTGACTACATATGAAGCAAAA 58.762 36.000 10.38 0.00 40.21 2.44
164 165 5.804639 ACAGGTGACTACATATGAAGCAAA 58.195 37.500 10.38 0.00 40.21 3.68
165 166 5.420725 ACAGGTGACTACATATGAAGCAA 57.579 39.130 10.38 0.00 40.21 3.91
166 167 5.046663 TCAACAGGTGACTACATATGAAGCA 60.047 40.000 10.38 0.00 40.21 3.91
167 168 5.419542 TCAACAGGTGACTACATATGAAGC 58.580 41.667 10.38 0.00 40.21 3.86
168 169 7.905604 TTTCAACAGGTGACTACATATGAAG 57.094 36.000 10.38 0.00 40.21 3.02
169 170 8.321353 AGATTTCAACAGGTGACTACATATGAA 58.679 33.333 10.38 0.00 40.21 2.57
170 171 7.851228 AGATTTCAACAGGTGACTACATATGA 58.149 34.615 10.38 0.00 40.21 2.15
171 172 7.984050 AGAGATTTCAACAGGTGACTACATATG 59.016 37.037 0.00 0.00 40.21 1.78
172 173 8.083828 AGAGATTTCAACAGGTGACTACATAT 57.916 34.615 0.00 0.00 40.21 1.78
173 174 7.482169 AGAGATTTCAACAGGTGACTACATA 57.518 36.000 0.00 0.00 40.21 2.29
174 175 6.365970 AGAGATTTCAACAGGTGACTACAT 57.634 37.500 0.00 0.00 40.21 2.29
175 176 5.808366 AGAGATTTCAACAGGTGACTACA 57.192 39.130 0.00 0.00 40.21 2.74
176 177 8.603242 TTTTAGAGATTTCAACAGGTGACTAC 57.397 34.615 0.00 0.00 40.21 2.73
177 178 9.273016 CTTTTTAGAGATTTCAACAGGTGACTA 57.727 33.333 0.00 0.00 40.21 2.59
178 179 7.993183 TCTTTTTAGAGATTTCAACAGGTGACT 59.007 33.333 0.00 0.00 46.44 3.41
179 180 8.070769 GTCTTTTTAGAGATTTCAACAGGTGAC 58.929 37.037 0.00 0.00 35.39 3.67
180 181 7.773224 TGTCTTTTTAGAGATTTCAACAGGTGA 59.227 33.333 0.00 0.00 0.00 4.02
181 182 7.930217 TGTCTTTTTAGAGATTTCAACAGGTG 58.070 34.615 0.00 0.00 0.00 4.00
182 183 8.519799 TTGTCTTTTTAGAGATTTCAACAGGT 57.480 30.769 0.00 0.00 0.00 4.00
183 184 9.971922 ATTTGTCTTTTTAGAGATTTCAACAGG 57.028 29.630 0.00 0.00 0.00 4.00
246 247 8.819974 GGACGAACGGAGTATTTCATATTAAAA 58.180 33.333 0.00 0.00 45.00 1.52
247 248 7.439056 GGGACGAACGGAGTATTTCATATTAAA 59.561 37.037 0.00 0.00 45.00 1.52
248 249 6.925165 GGGACGAACGGAGTATTTCATATTAA 59.075 38.462 0.00 0.00 45.00 1.40
249 250 6.040729 TGGGACGAACGGAGTATTTCATATTA 59.959 38.462 0.00 0.00 45.00 0.98
250 251 5.163385 TGGGACGAACGGAGTATTTCATATT 60.163 40.000 0.00 0.00 45.00 1.28
251 252 4.342951 TGGGACGAACGGAGTATTTCATAT 59.657 41.667 0.00 0.00 45.00 1.78
252 253 3.700539 TGGGACGAACGGAGTATTTCATA 59.299 43.478 0.00 0.00 45.00 2.15
253 254 2.498481 TGGGACGAACGGAGTATTTCAT 59.502 45.455 0.00 0.00 45.00 2.57
254 255 1.894466 TGGGACGAACGGAGTATTTCA 59.106 47.619 0.00 0.00 45.00 2.69
255 256 2.660189 TGGGACGAACGGAGTATTTC 57.340 50.000 0.00 0.00 45.00 2.17
256 257 2.564062 TCTTGGGACGAACGGAGTATTT 59.436 45.455 0.00 0.00 45.00 1.40
257 258 2.173519 TCTTGGGACGAACGGAGTATT 58.826 47.619 0.00 0.00 45.00 1.89
258 259 1.843368 TCTTGGGACGAACGGAGTAT 58.157 50.000 0.00 0.00 45.00 2.12
259 260 1.843368 ATCTTGGGACGAACGGAGTA 58.157 50.000 0.00 0.00 45.00 2.59
261 262 2.094762 AAATCTTGGGACGAACGGAG 57.905 50.000 0.00 0.00 0.00 4.63
262 263 2.550606 CAAAAATCTTGGGACGAACGGA 59.449 45.455 0.00 0.00 0.00 4.69
263 264 2.292292 ACAAAAATCTTGGGACGAACGG 59.708 45.455 0.00 0.00 0.00 4.44
264 265 3.250040 AGACAAAAATCTTGGGACGAACG 59.750 43.478 0.00 0.00 0.00 3.95
265 266 4.830826 AGACAAAAATCTTGGGACGAAC 57.169 40.909 0.00 0.00 0.00 3.95
266 267 6.945938 TTAAGACAAAAATCTTGGGACGAA 57.054 33.333 0.00 0.00 39.33 3.85
267 268 6.945938 TTTAAGACAAAAATCTTGGGACGA 57.054 33.333 0.00 0.00 39.33 4.20
268 269 8.587952 AAATTTAAGACAAAAATCTTGGGACG 57.412 30.769 0.00 0.00 39.33 4.79
314 315 9.819267 GGATGTATCTAACACTAAAGCTTAACT 57.181 33.333 0.00 0.00 42.09 2.24
315 316 9.595823 TGGATGTATCTAACACTAAAGCTTAAC 57.404 33.333 0.00 0.00 42.09 2.01
335 336 9.147732 TGTCTTACATTGTCTAGATATGGATGT 57.852 33.333 17.23 13.49 0.00 3.06
336 337 9.987272 TTGTCTTACATTGTCTAGATATGGATG 57.013 33.333 17.23 12.78 0.00 3.51
338 339 9.421399 TCTTGTCTTACATTGTCTAGATATGGA 57.579 33.333 17.23 9.62 0.00 3.41
345 346 9.831737 CCAAAATTCTTGTCTTACATTGTCTAG 57.168 33.333 0.00 0.00 0.00 2.43
346 347 8.792633 CCCAAAATTCTTGTCTTACATTGTCTA 58.207 33.333 0.00 0.00 0.00 2.59
347 348 7.505585 TCCCAAAATTCTTGTCTTACATTGTCT 59.494 33.333 0.00 0.00 0.00 3.41
348 349 7.595130 GTCCCAAAATTCTTGTCTTACATTGTC 59.405 37.037 0.00 0.00 0.00 3.18
349 350 7.433680 GTCCCAAAATTCTTGTCTTACATTGT 58.566 34.615 0.00 0.00 0.00 2.71
350 351 6.868339 GGTCCCAAAATTCTTGTCTTACATTG 59.132 38.462 0.00 0.00 0.00 2.82
351 352 6.294508 CGGTCCCAAAATTCTTGTCTTACATT 60.295 38.462 0.00 0.00 0.00 2.71
352 353 5.183140 CGGTCCCAAAATTCTTGTCTTACAT 59.817 40.000 0.00 0.00 0.00 2.29
353 354 4.517453 CGGTCCCAAAATTCTTGTCTTACA 59.483 41.667 0.00 0.00 0.00 2.41
354 355 4.758165 TCGGTCCCAAAATTCTTGTCTTAC 59.242 41.667 0.00 0.00 0.00 2.34
355 356 4.975631 TCGGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
356 357 3.821033 CTCGGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
357 358 3.412386 CTCGGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
358 359 2.488153 CCTCGGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
359 360 2.514803 CCTCGGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
360 361 1.818674 CCCTCGGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
361 362 1.708551 TCCCTCGGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
362 363 1.368374 TCCCTCGGTCCCAAAATTCT 58.632 50.000 0.00 0.00 0.00 2.40
363 364 2.209690 TTCCCTCGGTCCCAAAATTC 57.790 50.000 0.00 0.00 0.00 2.17
364 365 2.919772 ATTCCCTCGGTCCCAAAATT 57.080 45.000 0.00 0.00 0.00 1.82
365 366 5.860648 ATATATTCCCTCGGTCCCAAAAT 57.139 39.130 0.00 0.00 0.00 1.82
366 367 6.502510 TCATATATATTCCCTCGGTCCCAAAA 59.497 38.462 0.00 0.00 0.00 2.44
367 368 6.026834 TCATATATATTCCCTCGGTCCCAAA 58.973 40.000 0.00 0.00 0.00 3.28
368 369 5.595770 TCATATATATTCCCTCGGTCCCAA 58.404 41.667 0.00 0.00 0.00 4.12
369 370 5.215266 TCATATATATTCCCTCGGTCCCA 57.785 43.478 0.00 0.00 0.00 4.37
370 371 5.453480 GCTTCATATATATTCCCTCGGTCCC 60.453 48.000 0.00 0.00 0.00 4.46
371 372 5.128827 TGCTTCATATATATTCCCTCGGTCC 59.871 44.000 0.00 0.00 0.00 4.46
372 373 6.222038 TGCTTCATATATATTCCCTCGGTC 57.778 41.667 0.00 0.00 0.00 4.79
373 374 6.620877 TTGCTTCATATATATTCCCTCGGT 57.379 37.500 0.00 0.00 0.00 4.69
374 375 7.921786 TTTTGCTTCATATATATTCCCTCGG 57.078 36.000 0.00 0.00 0.00 4.63
375 376 9.166173 TCATTTTGCTTCATATATATTCCCTCG 57.834 33.333 0.00 0.00 0.00 4.63
389 390 9.932207 AGATTTACATTCATTCATTTTGCTTCA 57.068 25.926 0.00 0.00 0.00 3.02
416 417 8.072567 GGATACGAATGTACATAGACGTAGTTT 58.927 37.037 28.45 20.22 39.02 2.66
417 418 7.579726 GGATACGAATGTACATAGACGTAGTT 58.420 38.462 28.45 20.65 39.02 2.24
418 419 7.126726 GGATACGAATGTACATAGACGTAGT 57.873 40.000 28.45 21.73 39.02 2.73
437 438 5.756347 TCCAATTTACACTGCATACGGATAC 59.244 40.000 0.00 0.00 0.00 2.24
438 439 5.919755 TCCAATTTACACTGCATACGGATA 58.080 37.500 0.00 0.00 0.00 2.59
439 440 4.776349 TCCAATTTACACTGCATACGGAT 58.224 39.130 0.00 0.00 0.00 4.18
440 441 4.209307 TCCAATTTACACTGCATACGGA 57.791 40.909 0.00 0.00 0.00 4.69
441 442 4.955925 TTCCAATTTACACTGCATACGG 57.044 40.909 0.00 0.00 0.00 4.02
442 443 5.965334 GTCATTCCAATTTACACTGCATACG 59.035 40.000 0.00 0.00 0.00 3.06
443 444 7.088589 AGTCATTCCAATTTACACTGCATAC 57.911 36.000 0.00 0.00 0.00 2.39
444 445 8.800370 TTAGTCATTCCAATTTACACTGCATA 57.200 30.769 0.00 0.00 0.00 3.14
445 446 7.701539 TTAGTCATTCCAATTTACACTGCAT 57.298 32.000 0.00 0.00 0.00 3.96
446 447 7.517614 TTTAGTCATTCCAATTTACACTGCA 57.482 32.000 0.00 0.00 0.00 4.41
447 448 8.810652 TTTTTAGTCATTCCAATTTACACTGC 57.189 30.769 0.00 0.00 0.00 4.40
450 451 9.959749 TGTCTTTTTAGTCATTCCAATTTACAC 57.040 29.630 0.00 0.00 0.00 2.90
478 479 9.903682 CGTTCCGATATACTCCTTTCTAAATAA 57.096 33.333 0.00 0.00 0.00 1.40
479 480 8.025445 GCGTTCCGATATACTCCTTTCTAAATA 58.975 37.037 0.00 0.00 0.00 1.40
480 481 6.867293 GCGTTCCGATATACTCCTTTCTAAAT 59.133 38.462 0.00 0.00 0.00 1.40
481 482 6.183360 TGCGTTCCGATATACTCCTTTCTAAA 60.183 38.462 0.00 0.00 0.00 1.85
482 483 5.300034 TGCGTTCCGATATACTCCTTTCTAA 59.700 40.000 0.00 0.00 0.00 2.10
483 484 4.823442 TGCGTTCCGATATACTCCTTTCTA 59.177 41.667 0.00 0.00 0.00 2.10
484 485 3.635373 TGCGTTCCGATATACTCCTTTCT 59.365 43.478 0.00 0.00 0.00 2.52
485 486 3.973657 TGCGTTCCGATATACTCCTTTC 58.026 45.455 0.00 0.00 0.00 2.62
486 487 3.243771 CCTGCGTTCCGATATACTCCTTT 60.244 47.826 0.00 0.00 0.00 3.11
487 488 2.296471 CCTGCGTTCCGATATACTCCTT 59.704 50.000 0.00 0.00 0.00 3.36
488 489 1.887198 CCTGCGTTCCGATATACTCCT 59.113 52.381 0.00 0.00 0.00 3.69
489 490 1.612463 ACCTGCGTTCCGATATACTCC 59.388 52.381 0.00 0.00 0.00 3.85
490 491 2.607282 CCACCTGCGTTCCGATATACTC 60.607 54.545 0.00 0.00 0.00 2.59
491 492 1.340248 CCACCTGCGTTCCGATATACT 59.660 52.381 0.00 0.00 0.00 2.12
492 493 1.779569 CCACCTGCGTTCCGATATAC 58.220 55.000 0.00 0.00 0.00 1.47
493 494 0.032952 GCCACCTGCGTTCCGATATA 59.967 55.000 0.00 0.00 0.00 0.86
494 495 1.227556 GCCACCTGCGTTCCGATAT 60.228 57.895 0.00 0.00 0.00 1.63
495 496 2.185867 GCCACCTGCGTTCCGATA 59.814 61.111 0.00 0.00 0.00 2.92
507 508 4.821589 CTCGCCTTCCTCGCCACC 62.822 72.222 0.00 0.00 0.00 4.61
508 509 4.821589 CCTCGCCTTCCTCGCCAC 62.822 72.222 0.00 0.00 0.00 5.01
512 513 3.775654 AAGCCCTCGCCTTCCTCG 61.776 66.667 0.00 0.00 34.57 4.63
513 514 2.124942 CAAGCCCTCGCCTTCCTC 60.125 66.667 0.00 0.00 34.57 3.71
514 515 3.721706 CCAAGCCCTCGCCTTCCT 61.722 66.667 0.00 0.00 34.57 3.36
541 542 0.733566 TAGCCCTTTTCGCGTACACG 60.734 55.000 5.77 0.00 43.27 4.49
542 543 1.392510 CTTAGCCCTTTTCGCGTACAC 59.607 52.381 5.77 0.00 0.00 2.90
543 544 1.717194 CTTAGCCCTTTTCGCGTACA 58.283 50.000 5.77 0.00 0.00 2.90
544 545 0.372679 GCTTAGCCCTTTTCGCGTAC 59.627 55.000 5.77 0.00 0.00 3.67
545 546 1.079875 CGCTTAGCCCTTTTCGCGTA 61.080 55.000 5.77 0.00 36.28 4.42
546 547 2.388232 CGCTTAGCCCTTTTCGCGT 61.388 57.895 5.77 0.00 36.28 6.01
547 548 1.632046 TTCGCTTAGCCCTTTTCGCG 61.632 55.000 0.00 0.00 41.69 5.87
548 549 0.097150 CTTCGCTTAGCCCTTTTCGC 59.903 55.000 0.00 0.00 0.00 4.70
549 550 1.393883 GACTTCGCTTAGCCCTTTTCG 59.606 52.381 0.00 0.00 0.00 3.46
550 551 2.701107 AGACTTCGCTTAGCCCTTTTC 58.299 47.619 0.00 0.00 0.00 2.29
551 552 2.861147 AGACTTCGCTTAGCCCTTTT 57.139 45.000 0.00 0.00 0.00 2.27
552 553 2.038557 TGAAGACTTCGCTTAGCCCTTT 59.961 45.455 10.56 0.00 0.00 3.11
553 554 1.623811 TGAAGACTTCGCTTAGCCCTT 59.376 47.619 10.56 0.00 0.00 3.95
554 555 1.267121 TGAAGACTTCGCTTAGCCCT 58.733 50.000 10.56 0.00 0.00 5.19
555 556 2.094762 TTGAAGACTTCGCTTAGCCC 57.905 50.000 10.56 0.00 0.00 5.19
556 557 2.609916 GGATTGAAGACTTCGCTTAGCC 59.390 50.000 10.56 4.70 0.00 3.93
557 558 2.609916 GGGATTGAAGACTTCGCTTAGC 59.390 50.000 10.56 0.00 0.00 3.09
558 559 2.860735 CGGGATTGAAGACTTCGCTTAG 59.139 50.000 10.56 0.00 0.00 2.18
559 560 2.418197 CCGGGATTGAAGACTTCGCTTA 60.418 50.000 10.56 0.00 0.00 3.09
560 561 1.676014 CCGGGATTGAAGACTTCGCTT 60.676 52.381 10.56 0.00 0.00 4.68
561 562 0.108138 CCGGGATTGAAGACTTCGCT 60.108 55.000 10.56 0.08 0.00 4.93
562 563 0.108329 TCCGGGATTGAAGACTTCGC 60.108 55.000 10.56 2.83 0.00 4.70
563 564 2.604046 ATCCGGGATTGAAGACTTCG 57.396 50.000 2.97 0.00 0.00 3.79
564 565 5.277857 TCTTATCCGGGATTGAAGACTTC 57.722 43.478 15.98 8.34 0.00 3.01
565 566 5.693769 TTCTTATCCGGGATTGAAGACTT 57.306 39.130 15.98 0.00 0.00 3.01
566 567 5.693769 TTTCTTATCCGGGATTGAAGACT 57.306 39.130 15.98 0.00 0.00 3.24
567 568 6.374613 ACTTTTTCTTATCCGGGATTGAAGAC 59.625 38.462 15.98 0.00 0.00 3.01
568 569 6.481643 ACTTTTTCTTATCCGGGATTGAAGA 58.518 36.000 15.98 15.53 0.00 2.87
569 570 6.599638 AGACTTTTTCTTATCCGGGATTGAAG 59.400 38.462 15.98 13.43 0.00 3.02
570 571 6.481643 AGACTTTTTCTTATCCGGGATTGAA 58.518 36.000 15.98 16.12 0.00 2.69
571 572 6.062258 AGACTTTTTCTTATCCGGGATTGA 57.938 37.500 15.98 11.15 0.00 2.57
572 573 6.374333 TGAAGACTTTTTCTTATCCGGGATTG 59.626 38.462 15.98 8.94 45.24 2.67
573 574 6.481643 TGAAGACTTTTTCTTATCCGGGATT 58.518 36.000 15.98 0.00 45.24 3.01
574 575 6.062258 TGAAGACTTTTTCTTATCCGGGAT 57.938 37.500 15.04 15.04 45.24 3.85
575 576 5.492855 TGAAGACTTTTTCTTATCCGGGA 57.507 39.130 0.00 0.00 45.24 5.14
576 577 6.183360 GGAATGAAGACTTTTTCTTATCCGGG 60.183 42.308 0.00 0.00 45.24 5.73
577 578 6.183360 GGGAATGAAGACTTTTTCTTATCCGG 60.183 42.308 0.00 0.00 45.24 5.14
578 579 6.183360 GGGGAATGAAGACTTTTTCTTATCCG 60.183 42.308 10.09 0.00 45.24 4.18
579 580 6.183360 CGGGGAATGAAGACTTTTTCTTATCC 60.183 42.308 10.09 0.00 45.24 2.59
580 581 6.678164 GCGGGGAATGAAGACTTTTTCTTATC 60.678 42.308 10.09 0.00 45.24 1.75
581 582 5.125578 GCGGGGAATGAAGACTTTTTCTTAT 59.874 40.000 10.09 0.00 45.24 1.73
582 583 4.457949 GCGGGGAATGAAGACTTTTTCTTA 59.542 41.667 10.09 0.00 45.24 2.10
584 585 2.820197 GCGGGGAATGAAGACTTTTTCT 59.180 45.455 10.09 0.00 35.32 2.52
585 586 2.820197 AGCGGGGAATGAAGACTTTTTC 59.180 45.455 0.00 0.00 0.00 2.29
586 587 2.558359 CAGCGGGGAATGAAGACTTTTT 59.442 45.455 0.00 0.00 0.00 1.94
587 588 2.162681 CAGCGGGGAATGAAGACTTTT 58.837 47.619 0.00 0.00 0.00 2.27
588 589 1.073923 ACAGCGGGGAATGAAGACTTT 59.926 47.619 0.00 0.00 0.00 2.66
593 594 1.452108 GGGACAGCGGGGAATGAAG 60.452 63.158 0.00 0.00 0.00 3.02
700 701 1.156095 TGGAGCAGGAGTGGAGTCA 59.844 57.895 0.00 0.00 0.00 3.41
767 768 1.513586 CGCCTGGTCTACGAACGAC 60.514 63.158 0.14 0.00 0.00 4.34
812 840 0.456221 AACGATCAGCCGACGAGATT 59.544 50.000 0.00 0.00 0.00 2.40
881 909 3.923864 TTGCACTCCTCACCGCGT 61.924 61.111 4.92 0.00 0.00 6.01
1113 1180 2.685017 AGGACAGCATCTCCGGCA 60.685 61.111 0.00 0.00 32.45 5.69
1122 1189 4.377708 ACATGCGCGAGGACAGCA 62.378 61.111 12.10 0.00 45.46 4.41
1130 1197 1.069568 CAAACTTAACCACATGCGCGA 60.070 47.619 12.10 0.00 0.00 5.87
1233 1300 2.435586 GCGAGCTGCACATCCAGT 60.436 61.111 1.02 0.00 45.45 4.00
1287 1354 2.341257 CTTCTCTTGTGACCGGACATG 58.659 52.381 9.46 5.57 0.00 3.21
1340 1407 1.422161 GCCAGCCCTCACCATATCCT 61.422 60.000 0.00 0.00 0.00 3.24
1533 1600 1.969923 CCCTCAAACAAATCCCAAGCA 59.030 47.619 0.00 0.00 0.00 3.91
1617 1684 3.006967 ACAGTACTTTGGCTCGATCAACT 59.993 43.478 0.00 0.00 0.00 3.16
1631 1698 4.870426 CAGGCATACGATCAAACAGTACTT 59.130 41.667 0.00 0.00 0.00 2.24
1842 1909 5.027293 TGATCCCATGTCTGTTCATGTAG 57.973 43.478 11.86 0.00 42.29 2.74
1866 1933 4.498009 GCATTCCCGACAAAAGTATCCATG 60.498 45.833 0.00 0.00 0.00 3.66
1911 1978 2.107750 CGCTCGATGCTCCCACAT 59.892 61.111 5.53 0.00 40.11 3.21
1983 2050 4.242475 TCACTGCAAGACCAAGTATAACG 58.758 43.478 0.00 0.00 37.43 3.18
2124 2191 5.277857 TGAGAAAGAAGTCTCGTCCTTTT 57.722 39.130 0.00 0.00 46.00 2.27
2313 2380 5.766590 TCACCTATCTCTGAGTTACCATGA 58.233 41.667 4.32 1.15 0.00 3.07
2351 2418 3.710677 CTCTGGATCCAACTCAAGGAGAT 59.289 47.826 17.00 0.00 38.83 2.75
2430 2497 1.146263 CCTAAGCCACCGGACATCC 59.854 63.158 9.46 0.00 0.00 3.51
2731 2798 7.687941 AGTTTTTCACGATCCTTATTGTCAT 57.312 32.000 0.00 0.00 0.00 3.06
2806 2873 5.990386 CCCTCACAACAATCTCTCTCATATG 59.010 44.000 0.00 0.00 0.00 1.78
2894 2961 4.600032 TGTTTTACATCATCGATGCATGC 58.400 39.130 25.02 11.82 43.15 4.06
3025 3092 9.522804 TTGGTGTGAGAACATTGTTTTAATTAC 57.477 29.630 3.08 0.45 0.00 1.89
3033 3100 4.214310 TCCATTGGTGTGAGAACATTGTT 58.786 39.130 0.63 0.63 0.00 2.83
3039 3106 1.541588 GGCTTCCATTGGTGTGAGAAC 59.458 52.381 1.86 0.00 0.00 3.01
3110 3177 3.673902 TCATCATTCGGCAACAGAGAAA 58.326 40.909 0.00 0.00 0.00 2.52
3165 3232 6.183360 GGCATGCAATAACTCACATTTCTTTG 60.183 38.462 21.36 0.00 0.00 2.77
3173 3240 3.786516 CATGGCATGCAATAACTCACA 57.213 42.857 21.36 4.91 0.00 3.58
3331 3398 8.744652 TGTTGGTGAAAGAAAATTAAGAAGACA 58.255 29.630 0.00 0.00 0.00 3.41
3423 3491 1.644509 TCAGCTTCAGGCCAGAAGTA 58.355 50.000 31.43 18.56 45.28 2.24
3451 3519 1.454572 ATGGCAGAACGCTGTTGCAA 61.455 50.000 0.00 0.00 44.17 4.08
3728 3811 4.140536 TGTGTGAATAACTTGTGCCATGA 58.859 39.130 0.00 0.00 0.00 3.07
3734 3817 6.317789 ACAAGGATGTGTGAATAACTTGTG 57.682 37.500 0.00 0.00 43.56 3.33
3753 3836 2.571212 TCTAACAACTGTGGGCACAAG 58.429 47.619 0.00 0.00 41.33 3.16
3820 3906 6.921332 ACCAAAATATAAGACGTTTTTGCG 57.079 33.333 13.03 9.88 37.60 4.85
3847 3933 9.252962 CGGATAAAAGTATGTATTTACTCCGTT 57.747 33.333 14.17 0.00 38.14 4.44
3849 3935 9.467258 TTCGGATAAAAGTATGTATTTACTCCG 57.533 33.333 15.22 15.22 41.01 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.