Multiple sequence alignment - TraesCS3B01G139300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G139300 chr3B 100.000 4622 0 0 1 4622 125925936 125930557 0.000000e+00 8536.0
1 TraesCS3B01G139300 chr3B 85.072 489 71 2 323 809 818074925 818075413 8.930000e-137 497.0
2 TraesCS3B01G139300 chr3D 91.165 2026 135 22 2342 4338 79601747 79603757 0.000000e+00 2710.0
3 TraesCS3B01G139300 chr3D 95.430 1466 54 6 813 2276 79600049 79601503 0.000000e+00 2324.0
4 TraesCS3B01G139300 chr3D 81.529 157 25 4 658 812 594526003 594525849 4.850000e-25 126.0
5 TraesCS3B01G139300 chr3A 88.369 1986 187 21 813 2771 93686714 93688682 0.000000e+00 2348.0
6 TraesCS3B01G139300 chr3A 93.810 1357 67 6 845 2200 93589807 93591147 0.000000e+00 2025.0
7 TraesCS3B01G139300 chr3A 84.443 1202 92 30 2773 3921 93688844 93690003 0.000000e+00 1096.0
8 TraesCS3B01G139300 chr3A 91.095 539 41 4 278 812 125402311 125401776 0.000000e+00 723.0
9 TraesCS3B01G139300 chr3A 89.602 327 34 0 13 339 125402519 125402193 2.570000e-112 416.0
10 TraesCS3B01G139300 chr3A 85.036 274 25 7 813 1081 93678910 93679172 9.860000e-67 265.0
11 TraesCS3B01G139300 chr3A 91.852 135 10 1 4205 4338 93697593 93697727 2.200000e-43 187.0
12 TraesCS3B01G139300 chr3A 90.244 123 11 1 3958 4080 93690004 93690125 4.790000e-35 159.0
13 TraesCS3B01G139300 chr4B 91.604 536 41 4 281 812 288179423 288179958 0.000000e+00 737.0
14 TraesCS3B01G139300 chr4B 89.286 336 36 0 4 339 288179203 288179538 5.530000e-114 422.0
15 TraesCS3B01G139300 chr4A 90.130 537 51 1 278 812 418661890 418662426 0.000000e+00 697.0
16 TraesCS3B01G139300 chr4A 90.476 336 32 0 4 339 418661673 418662008 1.180000e-120 444.0
17 TraesCS3B01G139300 chr4A 81.935 155 27 1 658 812 610020973 610021126 3.750000e-26 130.0
18 TraesCS3B01G139300 chr4A 91.667 60 5 0 278 337 610010645 610010704 2.960000e-12 84.2
19 TraesCS3B01G139300 chr4A 86.842 76 7 1 199 271 438294220 438294295 1.070000e-11 82.4
20 TraesCS3B01G139300 chr1A 92.308 247 16 3 4376 4622 497353715 497353958 9.520000e-92 348.0
21 TraesCS3B01G139300 chr2D 87.766 188 22 1 323 509 234353153 234353340 7.790000e-53 219.0
22 TraesCS3B01G139300 chr1D 88.108 185 18 4 335 517 47887246 47887064 2.800000e-52 217.0
23 TraesCS3B01G139300 chr1D 82.051 156 23 4 658 812 413316272 413316121 1.350000e-25 128.0
24 TraesCS3B01G139300 chr5D 87.027 185 20 4 335 517 152775879 152776061 6.060000e-49 206.0
25 TraesCS3B01G139300 chr5B 87.027 185 20 4 335 517 374441309 374441127 6.060000e-49 206.0
26 TraesCS3B01G139300 chr4D 85.714 196 24 4 324 517 311965536 311965729 2.180000e-48 204.0
27 TraesCS3B01G139300 chr7B 86.624 157 19 2 658 812 677335048 677334892 6.150000e-39 172.0
28 TraesCS3B01G139300 chr7B 89.474 57 6 0 2639 2695 688596425 688596369 6.410000e-09 73.1
29 TraesCS3B01G139300 chr7B 92.000 50 4 0 2639 2688 640512972 640513021 2.310000e-08 71.3
30 TraesCS3B01G139300 chr7D 80.612 196 35 3 618 812 274883248 274883055 1.040000e-31 148.0
31 TraesCS3B01G139300 chr7D 89.231 65 7 0 2638 2702 605479356 605479420 1.070000e-11 82.4
32 TraesCS3B01G139300 chr7A 90.164 61 6 0 2642 2702 696947185 696947125 3.830000e-11 80.5
33 TraesCS3B01G139300 chr7A 88.525 61 7 0 2642 2702 696877719 696877659 1.780000e-09 75.0
34 TraesCS3B01G139300 chr7A 92.000 50 4 0 2639 2688 669405470 669405519 2.310000e-08 71.3
35 TraesCS3B01G139300 chrUn 87.500 64 8 0 2639 2702 401645507 401645570 1.780000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G139300 chr3B 125925936 125930557 4621 False 8536.0 8536 100.000000 1 4622 1 chr3B.!!$F1 4621
1 TraesCS3B01G139300 chr3D 79600049 79603757 3708 False 2517.0 2710 93.297500 813 4338 2 chr3D.!!$F1 3525
2 TraesCS3B01G139300 chr3A 93589807 93591147 1340 False 2025.0 2025 93.810000 845 2200 1 chr3A.!!$F1 1355
3 TraesCS3B01G139300 chr3A 93686714 93690125 3411 False 1201.0 2348 87.685333 813 4080 3 chr3A.!!$F4 3267
4 TraesCS3B01G139300 chr3A 125401776 125402519 743 True 569.5 723 90.348500 13 812 2 chr3A.!!$R1 799
5 TraesCS3B01G139300 chr4B 288179203 288179958 755 False 579.5 737 90.445000 4 812 2 chr4B.!!$F1 808
6 TraesCS3B01G139300 chr4A 418661673 418662426 753 False 570.5 697 90.303000 4 812 2 chr4A.!!$F4 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 924 0.179192 CAAATCACCGTGCGTCCATG 60.179 55.0 0.00 0.00 0.00 3.66 F
1546 1579 0.325933 TCCCTGCAGACTTGGTGATG 59.674 55.0 17.39 0.00 0.00 3.07 F
1773 1809 0.034670 GGAAGCTCCTTGTCATGGCT 60.035 55.0 0.00 0.00 32.53 4.75 F
2442 2657 0.322546 GTGGCCGGATTGGATATCCC 60.323 60.0 19.34 3.62 42.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1792 0.034670 GGAGCCATGACAAGGAGCTT 60.035 55.0 0.00 0.00 32.97 3.74 R
3318 3714 0.316204 GATGGCATATGCAACCCAGC 59.684 55.0 28.07 15.83 44.36 4.85 R
3579 3975 0.242825 CCTTCTCGTACAAGCCACGA 59.757 55.0 0.00 0.00 45.51 4.35 R
4426 4856 0.038159 GATGGGTAGATTCCGGCGAG 60.038 60.0 9.30 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.503158 TCGCGTTGACGATGTCGG 60.503 61.111 5.77 0.00 44.95 4.79
68 69 1.778334 TTCTGTCGAACATGTGACGG 58.222 50.000 20.12 17.98 41.77 4.79
112 113 0.746659 ACGCATCATGGACGATCTGA 59.253 50.000 9.39 0.00 0.00 3.27
124 125 0.752009 CGATCTGAAGGACCTCCGGA 60.752 60.000 2.93 2.93 42.08 5.14
134 135 1.536662 ACCTCCGGAGCCTTGAAGT 60.537 57.895 26.87 13.54 0.00 3.01
168 169 0.900182 TCGGTGGAGACTGCAGTGAT 60.900 55.000 27.27 13.01 0.00 3.06
175 176 1.480137 GAGACTGCAGTGATAGTGGCT 59.520 52.381 27.27 12.41 0.00 4.75
268 269 3.443045 GCGGTGCCATGGACCTTG 61.443 66.667 18.40 9.47 0.00 3.61
269 270 2.034066 CGGTGCCATGGACCTTGT 59.966 61.111 18.40 0.00 0.00 3.16
270 271 2.040544 CGGTGCCATGGACCTTGTC 61.041 63.158 18.40 0.00 0.00 3.18
271 272 1.380302 GGTGCCATGGACCTTGTCT 59.620 57.895 18.40 0.00 32.47 3.41
272 273 0.618458 GGTGCCATGGACCTTGTCTA 59.382 55.000 18.40 0.00 32.47 2.59
273 274 1.212935 GGTGCCATGGACCTTGTCTAT 59.787 52.381 18.40 0.00 34.14 1.98
274 275 2.292267 GTGCCATGGACCTTGTCTATG 58.708 52.381 18.40 12.12 46.35 2.23
275 276 1.915489 TGCCATGGACCTTGTCTATGT 59.085 47.619 18.40 0.00 45.69 2.29
276 277 2.308570 TGCCATGGACCTTGTCTATGTT 59.691 45.455 18.40 0.00 45.69 2.71
277 278 2.684881 GCCATGGACCTTGTCTATGTTG 59.315 50.000 18.40 6.27 45.69 3.33
278 279 3.873801 GCCATGGACCTTGTCTATGTTGT 60.874 47.826 18.40 0.00 45.69 3.32
279 280 3.941483 CCATGGACCTTGTCTATGTTGTC 59.059 47.826 5.56 0.00 45.69 3.18
280 281 3.313012 TGGACCTTGTCTATGTTGTCG 57.687 47.619 0.00 0.00 32.47 4.35
281 282 2.894765 TGGACCTTGTCTATGTTGTCGA 59.105 45.455 0.00 0.00 32.47 4.20
282 283 3.251571 GGACCTTGTCTATGTTGTCGAC 58.748 50.000 9.11 9.11 32.47 4.20
283 284 3.251571 GACCTTGTCTATGTTGTCGACC 58.748 50.000 14.12 0.00 0.00 4.79
284 285 2.259618 CCTTGTCTATGTTGTCGACCG 58.740 52.381 14.12 0.00 0.00 4.79
285 286 2.352421 CCTTGTCTATGTTGTCGACCGT 60.352 50.000 14.12 2.26 0.00 4.83
286 287 2.341318 TGTCTATGTTGTCGACCGTG 57.659 50.000 14.12 0.00 0.00 4.94
287 288 1.068125 TGTCTATGTTGTCGACCGTGG 60.068 52.381 14.12 2.05 0.00 4.94
288 289 0.528924 TCTATGTTGTCGACCGTGGG 59.471 55.000 14.12 0.00 0.00 4.61
289 290 1.079681 TATGTTGTCGACCGTGGGC 60.080 57.895 14.12 0.00 0.00 5.36
290 291 1.537814 TATGTTGTCGACCGTGGGCT 61.538 55.000 14.12 0.00 0.00 5.19
291 292 2.737376 GTTGTCGACCGTGGGCTC 60.737 66.667 14.12 0.00 0.00 4.70
292 293 4.351938 TTGTCGACCGTGGGCTCG 62.352 66.667 14.12 0.00 0.00 5.03
294 295 4.477975 GTCGACCGTGGGCTCGAG 62.478 72.222 8.45 8.45 36.52 4.04
297 298 4.436998 GACCGTGGGCTCGAGGTG 62.437 72.222 15.58 0.00 37.07 4.00
300 301 4.436998 CGTGGGCTCGAGGTGGAC 62.437 72.222 15.58 0.00 0.00 4.02
301 302 4.436998 GTGGGCTCGAGGTGGACG 62.437 72.222 15.58 0.00 0.00 4.79
302 303 4.671590 TGGGCTCGAGGTGGACGA 62.672 66.667 15.58 0.00 38.11 4.20
303 304 4.131088 GGGCTCGAGGTGGACGAC 62.131 72.222 15.58 0.00 35.88 4.34
304 305 3.371063 GGCTCGAGGTGGACGACA 61.371 66.667 15.58 0.00 35.88 4.35
305 306 2.179517 GCTCGAGGTGGACGACAG 59.820 66.667 15.58 0.00 35.88 3.51
306 307 2.333417 GCTCGAGGTGGACGACAGA 61.333 63.158 15.58 0.00 35.88 3.41
307 308 1.797441 CTCGAGGTGGACGACAGAG 59.203 63.158 3.91 0.00 35.88 3.35
308 309 1.649390 CTCGAGGTGGACGACAGAGG 61.649 65.000 3.91 0.00 35.88 3.69
309 310 2.574399 GAGGTGGACGACAGAGGC 59.426 66.667 0.00 0.00 0.00 4.70
310 311 2.203640 AGGTGGACGACAGAGGCA 60.204 61.111 0.00 0.00 0.00 4.75
311 312 2.219325 GAGGTGGACGACAGAGGCAG 62.219 65.000 0.00 0.00 0.00 4.85
327 328 1.237285 GCAGCGTCATGGACCTTGTT 61.237 55.000 7.22 0.00 0.00 2.83
488 489 3.878519 GGACGAGCTCGAGGACCG 61.879 72.222 40.58 15.28 43.02 4.79
521 522 0.609406 CGTGGAGGAGGAGACACTGA 60.609 60.000 0.00 0.00 0.00 3.41
522 523 0.892063 GTGGAGGAGGAGACACTGAC 59.108 60.000 0.00 0.00 0.00 3.51
537 541 1.676678 CTGACGGGGTCGATGGTGAT 61.677 60.000 0.00 0.00 40.11 3.06
544 548 0.742505 GGTCGATGGTGATGTCGGTA 59.257 55.000 0.00 0.00 38.34 4.02
550 554 0.543410 TGGTGATGTCGGTACTGGGT 60.543 55.000 0.85 0.00 0.00 4.51
564 568 3.873812 GGGTATGACCAGGGCCGG 61.874 72.222 12.04 12.04 41.02 6.13
604 608 1.959738 AGTCGAGTCGAGTCGTGCA 60.960 57.895 34.49 18.43 40.93 4.57
661 665 0.755079 TGGAGATGAAGGATGCGAGG 59.245 55.000 0.00 0.00 0.00 4.63
725 729 2.125269 GTAAGTCGGCGGGCATGT 60.125 61.111 7.21 0.00 0.00 3.21
743 747 2.126071 CGTCGTCGCCAGTGGAAT 60.126 61.111 15.20 0.00 0.00 3.01
744 748 1.736645 CGTCGTCGCCAGTGGAATT 60.737 57.895 15.20 0.00 0.00 2.17
745 749 0.457166 CGTCGTCGCCAGTGGAATTA 60.457 55.000 15.20 0.00 0.00 1.40
789 799 3.558608 ATTGGGAAAATCAAGGGGTGA 57.441 42.857 0.00 0.00 41.67 4.02
817 827 0.322816 TGGCCTGGCTCTGACATTTC 60.323 55.000 19.68 0.00 0.00 2.17
826 836 3.149196 GCTCTGACATTTCACCCAAGAA 58.851 45.455 0.00 0.00 0.00 2.52
828 838 4.219288 GCTCTGACATTTCACCCAAGAATT 59.781 41.667 0.00 0.00 0.00 2.17
837 847 9.178758 ACATTTCACCCAAGAATTTCTATCTAC 57.821 33.333 0.00 0.00 0.00 2.59
874 884 3.426695 CGATCTCCACCAAATCTGCAAAC 60.427 47.826 0.00 0.00 0.00 2.93
908 918 3.439540 CCCCCAAATCACCGTGCG 61.440 66.667 0.00 0.00 0.00 5.34
909 919 2.671619 CCCCAAATCACCGTGCGT 60.672 61.111 0.00 0.00 0.00 5.24
910 920 2.686816 CCCCAAATCACCGTGCGTC 61.687 63.158 0.00 0.00 0.00 5.19
911 921 2.686816 CCCAAATCACCGTGCGTCC 61.687 63.158 0.00 0.00 0.00 4.79
912 922 1.963855 CCAAATCACCGTGCGTCCA 60.964 57.895 0.00 0.00 0.00 4.02
913 923 1.305219 CCAAATCACCGTGCGTCCAT 61.305 55.000 0.00 0.00 0.00 3.41
914 924 0.179192 CAAATCACCGTGCGTCCATG 60.179 55.000 0.00 0.00 0.00 3.66
915 925 1.922135 AAATCACCGTGCGTCCATGC 61.922 55.000 0.00 0.00 0.00 4.06
1180 1195 2.125350 GTGGCCTCTGGAAGCTCG 60.125 66.667 3.32 0.00 0.00 5.03
1328 1361 1.048724 ACGTGGATCCCCATCATCGT 61.049 55.000 9.90 6.00 45.68 3.73
1425 1458 2.826777 CTTGCTTCCAGGGTGCCGAT 62.827 60.000 2.77 0.00 0.00 4.18
1539 1572 2.743718 CGTGGTCCCTGCAGACTT 59.256 61.111 17.39 0.00 36.95 3.01
1545 1578 0.326264 GTCCCTGCAGACTTGGTGAT 59.674 55.000 17.39 0.00 33.79 3.06
1546 1579 0.325933 TCCCTGCAGACTTGGTGATG 59.674 55.000 17.39 0.00 0.00 3.07
1581 1614 3.993614 ATGCCCATCGCTGCGGAAA 62.994 57.895 23.03 2.82 38.78 3.13
1642 1678 6.600032 TGTAATCCACTCAGAGTCTCTCTTAC 59.400 42.308 0.00 5.78 38.99 2.34
1672 1708 6.844388 AGGGATGGATAATGTGTTACTAGACA 59.156 38.462 0.00 0.00 31.45 3.41
1756 1792 2.088423 AGAATTTAATTGGCGTGCGGA 58.912 42.857 0.00 0.00 0.00 5.54
1773 1809 0.034670 GGAAGCTCCTTGTCATGGCT 60.035 55.000 0.00 0.00 32.53 4.75
1843 1879 3.139029 GTGGATCCGAGTCAACCAC 57.861 57.895 7.39 0.00 42.83 4.16
1865 1901 1.153289 CCAACATCTCAGCCCCTCG 60.153 63.158 0.00 0.00 0.00 4.63
1909 1945 6.596309 ATGCTCGTTATGATAGAAGATCCA 57.404 37.500 0.00 0.00 0.00 3.41
1975 2011 6.710295 CGGTCAATTTCTTGTATATGGATCCA 59.290 38.462 18.88 18.88 33.87 3.41
2050 2086 1.343142 TCTGTCTTGACCTTGCGCTTA 59.657 47.619 9.73 0.00 0.00 3.09
2150 2187 9.297037 AGGTAAACATAGGGTTATGATATTTGC 57.703 33.333 1.84 0.00 39.29 3.68
2249 2286 8.893727 ACTCAATCTTTATTCTTTCCCAATACG 58.106 33.333 0.00 0.00 0.00 3.06
2298 2418 3.626930 TGCTTTGTACCACCTTTGAGTT 58.373 40.909 0.00 0.00 0.00 3.01
2308 2428 5.381757 ACCACCTTTGAGTTGTTAGCATTA 58.618 37.500 0.00 0.00 0.00 1.90
2315 2435 6.875948 TTGAGTTGTTAGCATTAAAGCTGA 57.124 33.333 15.21 4.16 46.11 4.26
2318 2438 6.262049 TGAGTTGTTAGCATTAAAGCTGAACA 59.738 34.615 15.21 16.05 46.11 3.18
2323 2443 4.954092 AGCATTAAAGCTGAACACTAGC 57.046 40.909 4.03 0.00 44.66 3.42
2442 2657 0.322546 GTGGCCGGATTGGATATCCC 60.323 60.000 19.34 3.62 42.00 3.85
2459 2674 2.595463 CCCCACCAGCACACACAG 60.595 66.667 0.00 0.00 0.00 3.66
2493 2708 9.781834 TGTAGTAAGAAAAATGAGTTTTGTGTG 57.218 29.630 0.00 0.00 39.60 3.82
2494 2709 9.783256 GTAGTAAGAAAAATGAGTTTTGTGTGT 57.217 29.630 0.00 0.00 39.60 3.72
2495 2710 8.911247 AGTAAGAAAAATGAGTTTTGTGTGTC 57.089 30.769 0.00 0.00 39.60 3.67
2497 2712 5.660460 AGAAAAATGAGTTTTGTGTGTCCC 58.340 37.500 0.00 0.00 39.60 4.46
2500 2715 5.675684 AAATGAGTTTTGTGTGTCCCTTT 57.324 34.783 0.00 0.00 0.00 3.11
2501 2716 5.675684 AATGAGTTTTGTGTGTCCCTTTT 57.324 34.783 0.00 0.00 0.00 2.27
2502 2717 5.675684 ATGAGTTTTGTGTGTCCCTTTTT 57.324 34.783 0.00 0.00 0.00 1.94
2557 2775 7.618117 TGACTTTCTATCAACCTGTAGGACATA 59.382 37.037 4.64 0.00 38.94 2.29
2594 2812 1.064906 ACTTGATGGAGGACATGCCAG 60.065 52.381 8.58 0.00 40.72 4.85
2599 2817 2.191641 GAGGACATGCCAGGGCTC 59.808 66.667 12.19 0.55 42.51 4.70
2603 2821 4.052518 ACATGCCAGGGCTCCCAC 62.053 66.667 12.19 0.00 42.51 4.61
2606 2824 3.369410 ATGCCAGGGCTCCCACATG 62.369 63.158 12.19 0.00 42.51 3.21
2626 2844 7.863375 CCACATGTTTTATTCTTGTCCGTAAAA 59.137 33.333 0.00 0.00 0.00 1.52
2629 2847 9.458374 CATGTTTTATTCTTGTCCGTAAAAGTT 57.542 29.630 0.00 0.00 29.60 2.66
2632 2850 3.974871 TTCTTGTCCGTAAAAGTTGCC 57.025 42.857 0.00 0.00 0.00 4.52
2640 2858 1.613270 GTAAAAGTTGCCGCGAATGG 58.387 50.000 8.23 0.00 0.00 3.16
2670 2888 0.957362 GGAGCCAGCTTATTCCATGC 59.043 55.000 0.00 0.00 0.00 4.06
2678 2896 2.106166 AGCTTATTCCATGCTCTCAGGG 59.894 50.000 0.00 0.00 45.10 4.45
2723 2941 4.823442 TGACTCTTGCATTTGATGTCAGTT 59.177 37.500 0.00 0.00 0.00 3.16
2804 3182 8.164070 AGTTACCTGGAAAGTCACAATCTATTT 58.836 33.333 0.00 0.00 0.00 1.40
2805 3183 6.824305 ACCTGGAAAGTCACAATCTATTTG 57.176 37.500 0.00 0.00 41.36 2.32
2806 3184 5.711976 ACCTGGAAAGTCACAATCTATTTGG 59.288 40.000 0.00 0.00 39.80 3.28
2829 3207 7.767261 TGGTATGTACTTCCATTTTTATGCAC 58.233 34.615 0.00 0.00 0.00 4.57
2847 3225 0.687427 ACACTTTGGCTTGGGTTGCT 60.687 50.000 0.00 0.00 0.00 3.91
2852 3230 2.961531 TTGGCTTGGGTTGCTAGTTA 57.038 45.000 0.00 0.00 0.00 2.24
2856 3234 2.554564 GGCTTGGGTTGCTAGTTACCTT 60.555 50.000 13.05 0.00 34.75 3.50
2875 3266 6.775594 ACCTTACTTGCTCTTCAAACTTTT 57.224 33.333 0.00 0.00 33.65 2.27
2916 3307 5.619132 TGGGTTTGGTAGCTAGGTAATAC 57.381 43.478 2.58 0.00 0.00 1.89
2917 3308 5.282946 TGGGTTTGGTAGCTAGGTAATACT 58.717 41.667 2.58 0.00 0.00 2.12
2918 3309 6.442961 TGGGTTTGGTAGCTAGGTAATACTA 58.557 40.000 2.58 0.00 0.00 1.82
2929 3320 8.980481 AGCTAGGTAATACTATGTTGCATTTT 57.020 30.769 0.00 0.00 0.00 1.82
2931 3322 8.621286 GCTAGGTAATACTATGTTGCATTTTGT 58.379 33.333 0.00 0.00 0.00 2.83
2940 3331 6.891908 ACTATGTTGCATTTTGTAAGATCCCT 59.108 34.615 0.00 0.00 29.66 4.20
2941 3332 5.389859 TGTTGCATTTTGTAAGATCCCTG 57.610 39.130 0.00 0.00 0.00 4.45
2942 3333 4.832266 TGTTGCATTTTGTAAGATCCCTGT 59.168 37.500 0.00 0.00 0.00 4.00
2943 3334 5.048083 TGTTGCATTTTGTAAGATCCCTGTC 60.048 40.000 0.00 0.00 0.00 3.51
2944 3335 4.922206 TGCATTTTGTAAGATCCCTGTCT 58.078 39.130 0.00 0.00 0.00 3.41
2945 3336 4.701651 TGCATTTTGTAAGATCCCTGTCTG 59.298 41.667 0.00 0.00 0.00 3.51
2962 3354 6.208204 CCCTGTCTGTTGAAAATCAGAGAAAT 59.792 38.462 0.00 0.00 40.63 2.17
2967 3359 8.239998 GTCTGTTGAAAATCAGAGAAATTAGGG 58.760 37.037 0.00 0.00 40.63 3.53
2968 3360 6.924111 TGTTGAAAATCAGAGAAATTAGGGC 58.076 36.000 0.00 0.00 0.00 5.19
2974 3366 5.994416 ATCAGAGAAATTAGGGCCCTTTA 57.006 39.130 34.04 19.76 0.00 1.85
3021 3413 5.542251 ACTTCCTCTTCTCTGCTCTACTTTT 59.458 40.000 0.00 0.00 0.00 2.27
3066 3458 5.928976 TGAATGTTATGTATCAGTGGAGGG 58.071 41.667 0.00 0.00 0.00 4.30
3087 3479 7.148069 GGAGGGTCTTTTATAATGGTTCTGTTG 60.148 40.741 0.00 0.00 0.00 3.33
3092 3484 9.191995 GTCTTTTATAATGGTTCTGTTGTTTGG 57.808 33.333 0.00 0.00 0.00 3.28
3159 3555 4.638865 GCCCCAACTAATTTGTAGGTAGTG 59.361 45.833 7.79 0.00 32.71 2.74
3171 3567 6.607735 TTGTAGGTAGTGTGCTTTTGTTAC 57.392 37.500 0.00 0.00 0.00 2.50
3183 3579 3.862845 GCTTTTGTTACTGTTGTTGGTGG 59.137 43.478 0.00 0.00 0.00 4.61
3190 3586 3.439857 ACTGTTGTTGGTGGCATATCT 57.560 42.857 0.00 0.00 0.00 1.98
3213 3609 8.777865 TCTCAAAGTATTCAGGTCATAGTTTG 57.222 34.615 11.56 11.56 43.24 2.93
3237 3633 6.441924 TGATATTTCCAGTTTCACCTCTCTCT 59.558 38.462 0.00 0.00 0.00 3.10
3244 3640 6.099845 TCCAGTTTCACCTCTCTCTTTTTACT 59.900 38.462 0.00 0.00 0.00 2.24
3288 3684 6.613755 TTCACTTATTCTTATTAAGCCGGC 57.386 37.500 21.89 21.89 0.00 6.13
3318 3714 1.662629 CAGGCTCAAACTACATGCTCG 59.337 52.381 0.00 0.00 0.00 5.03
3382 3778 2.663566 CTCCTGCTGAGTCACCTCA 58.336 57.895 0.00 0.00 45.44 3.86
3435 3831 6.651755 ACTGAAAATGAAGTTGCTTTTGTG 57.348 33.333 0.00 0.00 0.00 3.33
3549 3945 6.039941 GCCAGACATTACTAAGCTTCTCTAGA 59.960 42.308 0.00 0.00 0.00 2.43
3551 3947 7.284489 CCAGACATTACTAAGCTTCTCTAGACT 59.716 40.741 0.00 0.00 0.00 3.24
3558 3954 5.775701 ACTAAGCTTCTCTAGACTGGAAACA 59.224 40.000 0.00 0.00 39.59 2.83
3577 3973 5.514059 AACATGCATGAAATTTTACGTGC 57.486 34.783 32.75 14.21 45.59 5.34
3607 4003 2.726821 TGTACGAGAAGGTCCCGTATT 58.273 47.619 0.00 0.00 40.26 1.89
3719 4117 3.594603 AGAGTGGTCCAAGATGTTACG 57.405 47.619 0.00 0.00 0.00 3.18
3722 4120 4.954202 AGAGTGGTCCAAGATGTTACGATA 59.046 41.667 0.00 0.00 0.00 2.92
3748 4146 7.315142 TCATCAACCTATTTTGCAAGATGTTC 58.685 34.615 12.50 0.00 34.71 3.18
3753 4151 5.095490 CCTATTTTGCAAGATGTTCGAACC 58.905 41.667 24.78 10.91 0.00 3.62
3766 4164 3.380004 TGTTCGAACCTGCTTCATGTTTT 59.620 39.130 24.78 0.00 0.00 2.43
3767 4165 3.624326 TCGAACCTGCTTCATGTTTTG 57.376 42.857 0.00 0.00 0.00 2.44
3798 4196 1.272781 GCTCACGAATGGAGTTCTCG 58.727 55.000 0.00 0.00 38.53 4.04
3810 4215 1.154654 GTTCTCGGCGCTGTTTTCG 60.155 57.895 17.37 5.54 0.00 3.46
3821 4226 1.535860 GCTGTTTTCGCAAGCCTTTGA 60.536 47.619 0.00 0.00 36.36 2.69
3834 4239 4.574674 AGCCTTTGATGTGTAAGATCCA 57.425 40.909 0.00 0.00 35.39 3.41
3838 4243 6.038356 GCCTTTGATGTGTAAGATCCAAATG 58.962 40.000 0.00 0.00 35.39 2.32
3841 4268 8.090214 CCTTTGATGTGTAAGATCCAAATGTTT 58.910 33.333 0.00 0.00 35.39 2.83
3849 4278 3.857052 AGATCCAAATGTTTGCATGCAG 58.143 40.909 21.50 7.19 36.86 4.41
3887 4316 8.771920 ACTCATCAAGTTATGTCATTTTCGTA 57.228 30.769 0.00 0.00 33.03 3.43
3922 4351 0.036732 GTGGCACTGACTGAATCCCA 59.963 55.000 11.13 0.00 0.00 4.37
3936 4365 7.818930 TGACTGAATCCCAAGCATTTAAAAATC 59.181 33.333 0.00 0.00 0.00 2.17
3998 4427 6.682423 TCACCAGTTGCATGATGTATTTAG 57.318 37.500 0.00 0.00 0.00 1.85
4055 4484 7.384477 CAGAGCATATCTCATAAGGAATGACA 58.616 38.462 0.00 0.00 44.35 3.58
4059 4488 6.128336 GCATATCTCATAAGGAATGACACAGC 60.128 42.308 0.00 0.00 39.77 4.40
4068 4497 6.749923 AAGGAATGACACAGCTATTTTCTC 57.250 37.500 0.00 0.00 0.00 2.87
4080 4509 7.710044 CACAGCTATTTTCTCTGAGTACATGAT 59.290 37.037 0.00 0.00 0.00 2.45
4084 4513 8.580720 GCTATTTTCTCTGAGTACATGATCCTA 58.419 37.037 0.00 0.00 0.00 2.94
4107 4536 9.358872 CCTAGATTTGAAGGAAAACTAATTTGC 57.641 33.333 0.00 0.00 39.45 3.68
4119 4548 7.814587 GGAAAACTAATTTGCAAACAGAGCTAT 59.185 33.333 22.89 5.74 39.03 2.97
4169 4599 7.535139 AGTATGTATTTCGGTGGATTTGTTTG 58.465 34.615 0.00 0.00 0.00 2.93
4213 4643 7.480760 TCTTTTATGATGGAAAGGGAAAAGG 57.519 36.000 0.00 0.00 34.63 3.11
4219 4649 6.762077 TGATGGAAAGGGAAAAGGAAAAAT 57.238 33.333 0.00 0.00 0.00 1.82
4224 4654 6.041979 TGGAAAGGGAAAAGGAAAAATCAGAG 59.958 38.462 0.00 0.00 0.00 3.35
4257 4687 5.573337 AGGAAAAGATAATGCAGCAAGTC 57.427 39.130 0.00 0.00 0.00 3.01
4272 4702 1.469308 CAAGTCGGTCTAGTCGAAGCT 59.531 52.381 11.23 4.72 38.42 3.74
4303 4733 0.605319 TTGCCAGCCGTTTCTTCGAT 60.605 50.000 0.00 0.00 0.00 3.59
4318 4748 2.913777 TCGATGATCACGTTCGACTT 57.086 45.000 14.29 0.00 0.00 3.01
4338 4768 6.912591 CGACTTAGAAGTGCAAAATGAAAAGT 59.087 34.615 0.00 0.00 39.88 2.66
4339 4769 7.112148 CGACTTAGAAGTGCAAAATGAAAAGTC 59.888 37.037 0.00 12.18 39.88 3.01
4340 4770 7.203218 ACTTAGAAGTGCAAAATGAAAAGTCC 58.797 34.615 0.00 0.00 37.98 3.85
4341 4771 5.596836 AGAAGTGCAAAATGAAAAGTCCA 57.403 34.783 0.00 0.00 0.00 4.02
4342 4772 5.351458 AGAAGTGCAAAATGAAAAGTCCAC 58.649 37.500 0.00 0.00 0.00 4.02
4343 4773 3.705604 AGTGCAAAATGAAAAGTCCACG 58.294 40.909 0.00 0.00 0.00 4.94
4344 4774 2.218530 GTGCAAAATGAAAAGTCCACGC 59.781 45.455 0.00 0.00 0.00 5.34
4345 4775 1.451651 GCAAAATGAAAAGTCCACGCG 59.548 47.619 3.53 3.53 0.00 6.01
4346 4776 2.050691 CAAAATGAAAAGTCCACGCGG 58.949 47.619 12.47 0.00 0.00 6.46
4347 4777 1.600023 AAATGAAAAGTCCACGCGGA 58.400 45.000 12.47 0.00 39.79 5.54
4357 4787 2.754946 TCCACGCGGACTAAAAAGAT 57.245 45.000 12.47 0.00 35.91 2.40
4358 4788 2.613691 TCCACGCGGACTAAAAAGATC 58.386 47.619 12.47 0.00 35.91 2.75
4359 4789 1.323534 CCACGCGGACTAAAAAGATCG 59.676 52.381 12.47 0.00 0.00 3.69
4360 4790 0.997196 ACGCGGACTAAAAAGATCGC 59.003 50.000 12.47 0.00 39.79 4.58
4361 4791 0.996462 CGCGGACTAAAAAGATCGCA 59.004 50.000 0.00 0.00 42.75 5.10
4362 4792 1.266891 CGCGGACTAAAAAGATCGCAC 60.267 52.381 0.00 0.00 42.75 5.34
4363 4793 1.730064 GCGGACTAAAAAGATCGCACA 59.270 47.619 0.00 0.00 42.27 4.57
4364 4794 2.222819 GCGGACTAAAAAGATCGCACAG 60.223 50.000 0.00 0.00 42.27 3.66
4365 4795 2.348666 CGGACTAAAAAGATCGCACAGG 59.651 50.000 0.00 0.00 0.00 4.00
4366 4796 2.678336 GGACTAAAAAGATCGCACAGGG 59.322 50.000 0.00 0.00 0.00 4.45
4367 4797 2.084546 ACTAAAAAGATCGCACAGGGC 58.915 47.619 0.00 0.00 39.90 5.19
4368 4798 2.290323 ACTAAAAAGATCGCACAGGGCT 60.290 45.455 0.00 0.00 41.67 5.19
4369 4799 1.168714 AAAAAGATCGCACAGGGCTC 58.831 50.000 0.00 0.00 41.67 4.70
4370 4800 1.021390 AAAAGATCGCACAGGGCTCG 61.021 55.000 0.00 0.00 41.67 5.03
4371 4801 2.172483 AAAGATCGCACAGGGCTCGT 62.172 55.000 0.00 0.00 41.67 4.18
4372 4802 2.125512 GATCGCACAGGGCTCGTT 60.126 61.111 0.00 0.00 41.67 3.85
4373 4803 2.434884 ATCGCACAGGGCTCGTTG 60.435 61.111 0.00 0.00 41.67 4.10
4374 4804 3.240134 ATCGCACAGGGCTCGTTGT 62.240 57.895 0.00 0.00 41.67 3.32
4375 4805 2.731691 ATCGCACAGGGCTCGTTGTT 62.732 55.000 0.00 0.00 41.67 2.83
4376 4806 2.542907 CGCACAGGGCTCGTTGTTT 61.543 57.895 0.00 0.00 41.67 2.83
4377 4807 1.733526 GCACAGGGCTCGTTGTTTT 59.266 52.632 0.00 0.00 40.25 2.43
4378 4808 0.102300 GCACAGGGCTCGTTGTTTTT 59.898 50.000 0.00 0.00 40.25 1.94
4396 4826 4.417426 TTTTTCTCCCCTAAGGCGATAG 57.583 45.455 0.00 0.00 34.51 2.08
4397 4827 3.323774 TTTCTCCCCTAAGGCGATAGA 57.676 47.619 2.45 0.00 39.76 1.98
4410 4840 3.637998 GCGATAGACATAGGGTTTCGA 57.362 47.619 0.00 0.00 39.76 3.71
4411 4841 3.306818 GCGATAGACATAGGGTTTCGAC 58.693 50.000 0.00 0.00 39.76 4.20
4412 4842 3.243301 GCGATAGACATAGGGTTTCGACA 60.243 47.826 0.00 0.00 39.76 4.35
4413 4843 4.558898 GCGATAGACATAGGGTTTCGACAT 60.559 45.833 0.00 0.00 39.76 3.06
4414 4844 5.154932 CGATAGACATAGGGTTTCGACATC 58.845 45.833 0.00 0.00 39.76 3.06
4415 4845 5.048643 CGATAGACATAGGGTTTCGACATCT 60.049 44.000 0.00 0.00 39.76 2.90
4416 4846 6.515200 CGATAGACATAGGGTTTCGACATCTT 60.515 42.308 0.00 0.00 39.76 2.40
4417 4847 5.012328 AGACATAGGGTTTCGACATCTTC 57.988 43.478 0.00 0.00 0.00 2.87
4418 4848 4.120589 GACATAGGGTTTCGACATCTTCC 58.879 47.826 0.00 0.00 0.00 3.46
4419 4849 2.953466 TAGGGTTTCGACATCTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
4420 4850 0.249398 AGGGTTTCGACATCTTCCGG 59.751 55.000 0.00 0.00 0.00 5.14
4421 4851 0.743345 GGGTTTCGACATCTTCCGGG 60.743 60.000 0.00 0.00 0.00 5.73
4422 4852 0.743345 GGTTTCGACATCTTCCGGGG 60.743 60.000 0.00 0.00 0.00 5.73
4423 4853 0.743345 GTTTCGACATCTTCCGGGGG 60.743 60.000 0.00 0.00 0.00 5.40
4424 4854 2.530958 TTTCGACATCTTCCGGGGGC 62.531 60.000 0.00 0.00 0.00 5.80
4425 4855 4.891727 CGACATCTTCCGGGGGCG 62.892 72.222 0.00 0.00 0.00 6.13
4428 4858 4.918201 CATCTTCCGGGGGCGCTC 62.918 72.222 7.64 1.18 0.00 5.03
4440 4870 3.030882 GCGCTCGCCGGAATCTAC 61.031 66.667 5.05 0.00 37.44 2.59
4441 4871 2.354773 CGCTCGCCGGAATCTACC 60.355 66.667 5.05 0.00 0.00 3.18
4442 4872 2.029221 GCTCGCCGGAATCTACCC 59.971 66.667 5.05 0.00 0.00 3.69
4443 4873 2.792947 GCTCGCCGGAATCTACCCA 61.793 63.158 5.05 0.00 0.00 4.51
4444 4874 2.050269 CTCGCCGGAATCTACCCAT 58.950 57.895 5.05 0.00 0.00 4.00
4445 4875 0.038159 CTCGCCGGAATCTACCCATC 60.038 60.000 5.05 0.00 0.00 3.51
4446 4876 1.372997 CGCCGGAATCTACCCATCG 60.373 63.158 5.05 0.00 0.00 3.84
4447 4877 1.668151 GCCGGAATCTACCCATCGC 60.668 63.158 5.05 0.00 0.00 4.58
4448 4878 1.004918 CCGGAATCTACCCATCGCC 60.005 63.158 0.00 0.00 0.00 5.54
4449 4879 1.004918 CGGAATCTACCCATCGCCC 60.005 63.158 0.00 0.00 0.00 6.13
4450 4880 1.004918 GGAATCTACCCATCGCCCG 60.005 63.158 0.00 0.00 0.00 6.13
4451 4881 1.746517 GAATCTACCCATCGCCCGT 59.253 57.895 0.00 0.00 0.00 5.28
4452 4882 0.319641 GAATCTACCCATCGCCCGTC 60.320 60.000 0.00 0.00 0.00 4.79
4453 4883 2.083835 AATCTACCCATCGCCCGTCG 62.084 60.000 0.00 0.00 40.15 5.12
4454 4884 4.944372 CTACCCATCGCCCGTCGC 62.944 72.222 0.00 0.00 38.27 5.19
4459 4889 3.427425 CATCGCCCGTCGCCAAAA 61.427 61.111 0.00 0.00 38.27 2.44
4460 4890 3.428282 ATCGCCCGTCGCCAAAAC 61.428 61.111 0.00 0.00 38.27 2.43
4465 4895 4.653888 CCGTCGCCAAAACCCCCT 62.654 66.667 0.00 0.00 0.00 4.79
4466 4896 3.053896 CGTCGCCAAAACCCCCTC 61.054 66.667 0.00 0.00 0.00 4.30
4467 4897 3.053896 GTCGCCAAAACCCCCTCG 61.054 66.667 0.00 0.00 0.00 4.63
4468 4898 3.243053 TCGCCAAAACCCCCTCGA 61.243 61.111 0.00 0.00 0.00 4.04
4469 4899 3.053896 CGCCAAAACCCCCTCGAC 61.054 66.667 0.00 0.00 0.00 4.20
4470 4900 2.675423 GCCAAAACCCCCTCGACC 60.675 66.667 0.00 0.00 0.00 4.79
4471 4901 2.035155 CCAAAACCCCCTCGACCC 59.965 66.667 0.00 0.00 0.00 4.46
4472 4902 2.035155 CAAAACCCCCTCGACCCC 59.965 66.667 0.00 0.00 0.00 4.95
4473 4903 2.121644 AAAACCCCCTCGACCCCT 60.122 61.111 0.00 0.00 0.00 4.79
4474 4904 2.229203 AAAACCCCCTCGACCCCTC 61.229 63.158 0.00 0.00 0.00 4.30
4487 4917 3.857764 CCCTCGGGGCTAGTACTG 58.142 66.667 5.39 0.00 35.35 2.74
4488 4918 2.499827 CCCTCGGGGCTAGTACTGC 61.500 68.421 5.39 7.18 35.35 4.40
4489 4919 1.756950 CCTCGGGGCTAGTACTGCA 60.757 63.158 5.39 0.00 0.00 4.41
4490 4920 1.736586 CTCGGGGCTAGTACTGCAG 59.263 63.158 13.48 13.48 0.00 4.41
4491 4921 1.739338 CTCGGGGCTAGTACTGCAGG 61.739 65.000 19.93 0.00 0.00 4.85
4492 4922 2.797278 CGGGGCTAGTACTGCAGGG 61.797 68.421 19.93 3.75 0.00 4.45
4493 4923 2.444256 GGGGCTAGTACTGCAGGGG 61.444 68.421 19.93 4.10 0.00 4.79
4494 4924 2.444256 GGGCTAGTACTGCAGGGGG 61.444 68.421 19.93 4.47 0.00 5.40
4495 4925 1.689582 GGCTAGTACTGCAGGGGGT 60.690 63.158 19.93 0.00 0.00 4.95
4496 4926 1.687297 GGCTAGTACTGCAGGGGGTC 61.687 65.000 19.93 3.36 0.00 4.46
4497 4927 1.687297 GCTAGTACTGCAGGGGGTCC 61.687 65.000 19.93 0.00 0.00 4.46
4498 4928 1.380785 TAGTACTGCAGGGGGTCCG 60.381 63.158 19.93 0.00 38.33 4.79
4499 4929 2.866523 TAGTACTGCAGGGGGTCCGG 62.867 65.000 19.93 0.00 38.33 5.14
4500 4930 4.000620 TACTGCAGGGGGTCCGGA 62.001 66.667 19.93 0.00 38.33 5.14
4505 4935 3.537874 CAGGGGGTCCGGACGATC 61.538 72.222 27.68 18.63 38.33 3.69
4506 4936 3.752167 AGGGGGTCCGGACGATCT 61.752 66.667 27.68 20.01 38.33 2.75
4507 4937 3.537874 GGGGGTCCGGACGATCTG 61.538 72.222 27.68 0.00 0.00 2.90
4508 4938 4.222847 GGGGTCCGGACGATCTGC 62.223 72.222 27.68 12.83 0.00 4.26
4509 4939 3.148279 GGGTCCGGACGATCTGCT 61.148 66.667 27.68 0.00 0.00 4.24
4510 4940 2.413765 GGTCCGGACGATCTGCTC 59.586 66.667 27.68 7.98 0.00 4.26
4511 4941 2.413765 GTCCGGACGATCTGCTCC 59.586 66.667 20.85 0.00 0.00 4.70
4512 4942 2.044352 TCCGGACGATCTGCTCCA 60.044 61.111 0.00 0.00 0.00 3.86
4513 4943 2.121538 TCCGGACGATCTGCTCCAG 61.122 63.158 0.00 0.00 0.00 3.86
4514 4944 2.279120 CGGACGATCTGCTCCAGC 60.279 66.667 0.00 0.00 42.50 4.85
4515 4945 2.107953 GGACGATCTGCTCCAGCC 59.892 66.667 0.00 0.00 41.18 4.85
4516 4946 2.430610 GGACGATCTGCTCCAGCCT 61.431 63.158 0.00 0.00 41.18 4.58
4517 4947 1.227205 GACGATCTGCTCCAGCCTG 60.227 63.158 0.00 0.00 41.18 4.85
4518 4948 2.108566 CGATCTGCTCCAGCCTGG 59.891 66.667 3.69 3.69 41.18 4.45
4519 4949 2.509916 GATCTGCTCCAGCCTGGG 59.490 66.667 11.68 2.71 38.32 4.45
4520 4950 2.285969 ATCTGCTCCAGCCTGGGT 60.286 61.111 11.68 0.00 38.32 4.51
4521 4951 2.322638 GATCTGCTCCAGCCTGGGTC 62.323 65.000 11.68 3.52 38.32 4.46
4522 4952 4.106925 CTGCTCCAGCCTGGGTCC 62.107 72.222 11.68 0.00 38.32 4.46
4525 4955 2.368594 CTCCAGCCTGGGTCCCTA 59.631 66.667 11.68 0.00 38.32 3.53
4526 4956 1.764054 CTCCAGCCTGGGTCCCTAG 60.764 68.421 11.68 4.96 38.32 3.02
4527 4957 2.770048 CCAGCCTGGGTCCCTAGG 60.770 72.222 17.76 17.76 37.14 3.02
4528 4958 2.770048 CAGCCTGGGTCCCTAGGG 60.770 72.222 23.22 23.22 34.58 3.53
4529 4959 4.825679 AGCCTGGGTCCCTAGGGC 62.826 72.222 24.42 23.63 42.74 5.19
4539 4969 4.530857 CCTAGGGCGCGTGGGAAG 62.531 72.222 8.43 0.00 0.00 3.46
4540 4970 3.458163 CTAGGGCGCGTGGGAAGA 61.458 66.667 8.43 0.00 0.00 2.87
4541 4971 3.432051 CTAGGGCGCGTGGGAAGAG 62.432 68.421 8.43 0.00 0.00 2.85
4542 4972 3.949885 TAGGGCGCGTGGGAAGAGA 62.950 63.158 8.43 0.00 0.00 3.10
4543 4973 4.388499 GGGCGCGTGGGAAGAGAA 62.388 66.667 8.43 0.00 0.00 2.87
4544 4974 2.815647 GGCGCGTGGGAAGAGAAG 60.816 66.667 8.43 0.00 0.00 2.85
4545 4975 2.815647 GCGCGTGGGAAGAGAAGG 60.816 66.667 8.43 0.00 0.00 3.46
4546 4976 2.970639 CGCGTGGGAAGAGAAGGA 59.029 61.111 0.00 0.00 0.00 3.36
4547 4977 1.292223 CGCGTGGGAAGAGAAGGAA 59.708 57.895 0.00 0.00 0.00 3.36
4548 4978 0.737715 CGCGTGGGAAGAGAAGGAAG 60.738 60.000 0.00 0.00 0.00 3.46
4549 4979 0.391793 GCGTGGGAAGAGAAGGAAGG 60.392 60.000 0.00 0.00 0.00 3.46
4550 4980 1.267121 CGTGGGAAGAGAAGGAAGGA 58.733 55.000 0.00 0.00 0.00 3.36
4551 4981 1.205893 CGTGGGAAGAGAAGGAAGGAG 59.794 57.143 0.00 0.00 0.00 3.69
4552 4982 2.541466 GTGGGAAGAGAAGGAAGGAGA 58.459 52.381 0.00 0.00 0.00 3.71
4553 4983 2.499693 GTGGGAAGAGAAGGAAGGAGAG 59.500 54.545 0.00 0.00 0.00 3.20
4554 4984 2.115427 GGGAAGAGAAGGAAGGAGAGG 58.885 57.143 0.00 0.00 0.00 3.69
4555 4985 2.292587 GGGAAGAGAAGGAAGGAGAGGA 60.293 54.545 0.00 0.00 0.00 3.71
4556 4986 3.445987 GGAAGAGAAGGAAGGAGAGGAA 58.554 50.000 0.00 0.00 0.00 3.36
4557 4987 3.450817 GGAAGAGAAGGAAGGAGAGGAAG 59.549 52.174 0.00 0.00 0.00 3.46
4558 4988 3.845109 AGAGAAGGAAGGAGAGGAAGT 57.155 47.619 0.00 0.00 0.00 3.01
4559 4989 4.140575 AGAGAAGGAAGGAGAGGAAGTT 57.859 45.455 0.00 0.00 0.00 2.66
4560 4990 4.498493 AGAGAAGGAAGGAGAGGAAGTTT 58.502 43.478 0.00 0.00 0.00 2.66
4561 4991 4.910913 AGAGAAGGAAGGAGAGGAAGTTTT 59.089 41.667 0.00 0.00 0.00 2.43
4562 4992 5.371176 AGAGAAGGAAGGAGAGGAAGTTTTT 59.629 40.000 0.00 0.00 0.00 1.94
4563 4993 5.626142 AGAAGGAAGGAGAGGAAGTTTTTC 58.374 41.667 0.00 0.00 0.00 2.29
4564 4994 5.371176 AGAAGGAAGGAGAGGAAGTTTTTCT 59.629 40.000 0.00 0.00 33.68 2.52
4565 4995 5.654901 AGGAAGGAGAGGAAGTTTTTCTT 57.345 39.130 0.00 0.00 39.32 2.52
4566 4996 5.380900 AGGAAGGAGAGGAAGTTTTTCTTG 58.619 41.667 0.00 0.00 36.40 3.02
4567 4997 5.103898 AGGAAGGAGAGGAAGTTTTTCTTGT 60.104 40.000 0.00 0.00 36.40 3.16
4568 4998 5.594725 GGAAGGAGAGGAAGTTTTTCTTGTT 59.405 40.000 0.00 0.00 36.40 2.83
4569 4999 6.238786 GGAAGGAGAGGAAGTTTTTCTTGTTC 60.239 42.308 0.00 0.00 36.40 3.18
4570 5000 4.816925 AGGAGAGGAAGTTTTTCTTGTTCG 59.183 41.667 0.00 0.00 36.40 3.95
4571 5001 4.814771 GGAGAGGAAGTTTTTCTTGTTCGA 59.185 41.667 0.00 0.00 36.40 3.71
4572 5002 5.050023 GGAGAGGAAGTTTTTCTTGTTCGAG 60.050 44.000 0.00 0.00 36.40 4.04
4573 5003 5.671493 AGAGGAAGTTTTTCTTGTTCGAGA 58.329 37.500 0.00 0.00 36.40 4.04
4574 5004 6.292150 AGAGGAAGTTTTTCTTGTTCGAGAT 58.708 36.000 0.00 0.00 36.40 2.75
4575 5005 6.425417 AGAGGAAGTTTTTCTTGTTCGAGATC 59.575 38.462 0.00 0.00 36.40 2.75
4576 5006 5.470437 AGGAAGTTTTTCTTGTTCGAGATCC 59.530 40.000 0.00 0.00 36.40 3.36
4577 5007 4.992381 AGTTTTTCTTGTTCGAGATCCG 57.008 40.909 0.00 0.00 40.25 4.18
4578 5008 4.628074 AGTTTTTCTTGTTCGAGATCCGA 58.372 39.130 2.65 2.65 46.94 4.55
4579 5009 5.701290 AAGTTTTTCTTGTTCGAGATCCGAT 59.299 36.000 7.05 0.00 39.96 4.18
4580 5010 6.128526 AAGTTTTTCTTGTTCGAGATCCGATC 60.129 38.462 7.05 0.00 39.96 3.69
4581 5011 8.429607 AAGTTTTTCTTGTTCGAGATCCGATCA 61.430 37.037 11.01 11.10 43.01 2.92
4584 5014 2.540515 TTGTTCGAGATCCGATCAAGC 58.459 47.619 18.18 0.00 46.12 4.01
4585 5015 2.094234 TTGTTCGAGATCCGATCAAGCA 60.094 45.455 18.18 1.85 46.12 3.91
4586 5016 3.980564 TTGTTCGAGATCCGATCAAGCAG 60.981 47.826 18.18 0.00 46.12 4.24
4587 5017 0.031314 TCGAGATCCGATCAAGCAGC 59.969 55.000 11.01 0.00 43.23 5.25
4588 5018 1.274126 CGAGATCCGATCAAGCAGCG 61.274 60.000 11.01 1.40 41.76 5.18
4589 5019 0.031314 GAGATCCGATCAAGCAGCGA 59.969 55.000 11.01 0.00 0.00 4.93
4590 5020 0.678395 AGATCCGATCAAGCAGCGAT 59.322 50.000 11.01 0.00 0.00 4.58
4591 5021 0.788995 GATCCGATCAAGCAGCGATG 59.211 55.000 0.00 0.00 0.00 3.84
4592 5022 0.602106 ATCCGATCAAGCAGCGATGG 60.602 55.000 1.46 0.00 0.00 3.51
4593 5023 2.630317 CGATCAAGCAGCGATGGC 59.370 61.111 1.46 0.00 40.37 4.40
4609 5039 2.279784 GCTGAAGGAGCGGGATCG 60.280 66.667 0.00 0.00 38.15 3.69
4619 5049 4.598894 CGGGATCGCAGAGGCTGG 62.599 72.222 10.70 0.00 43.63 4.85
4620 5050 4.247380 GGGATCGCAGAGGCTGGG 62.247 72.222 4.64 5.26 43.63 4.45
4621 5051 4.247380 GGATCGCAGAGGCTGGGG 62.247 72.222 10.91 0.00 43.63 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.503158 CCGACATCGTCAACGCGA 60.503 61.111 15.93 0.00 45.32 5.87
11 12 4.191485 CGCCGACATCGTCAACGC 62.191 66.667 0.00 0.00 39.60 4.84
39 40 0.038251 TTCGACAGAATGCTCGCACT 60.038 50.000 0.00 0.00 42.53 4.40
68 69 0.672342 GATTGCATGGAGATGGTGCC 59.328 55.000 0.00 0.00 38.06 5.01
124 125 2.039613 CTCCTTCTCCAACTTCAAGGCT 59.960 50.000 0.00 0.00 36.16 4.58
134 135 0.538977 ACCGACGTCTCCTTCTCCAA 60.539 55.000 14.70 0.00 0.00 3.53
168 169 1.153647 CGCACCATCGAAGCCACTA 60.154 57.895 0.00 0.00 0.00 2.74
255 256 1.915489 ACATAGACAAGGTCCATGGCA 59.085 47.619 6.96 0.00 36.33 4.92
256 257 2.684881 CAACATAGACAAGGTCCATGGC 59.315 50.000 6.96 1.78 36.33 4.40
257 258 3.941483 GACAACATAGACAAGGTCCATGG 59.059 47.826 4.97 4.97 36.33 3.66
258 259 3.618594 CGACAACATAGACAAGGTCCATG 59.381 47.826 3.74 3.74 37.60 3.66
259 260 3.513912 TCGACAACATAGACAAGGTCCAT 59.486 43.478 0.00 0.00 32.18 3.41
260 261 2.894765 TCGACAACATAGACAAGGTCCA 59.105 45.455 0.00 0.00 32.18 4.02
261 262 3.251571 GTCGACAACATAGACAAGGTCC 58.748 50.000 11.55 0.00 33.39 4.46
262 263 3.251571 GGTCGACAACATAGACAAGGTC 58.748 50.000 18.91 0.00 34.78 3.85
263 264 2.352421 CGGTCGACAACATAGACAAGGT 60.352 50.000 18.91 0.00 34.78 3.50
264 265 2.259618 CGGTCGACAACATAGACAAGG 58.740 52.381 18.91 0.00 34.78 3.61
265 266 2.661675 CACGGTCGACAACATAGACAAG 59.338 50.000 18.91 0.00 34.78 3.16
266 267 2.608506 CCACGGTCGACAACATAGACAA 60.609 50.000 18.91 0.00 34.78 3.18
267 268 1.068125 CCACGGTCGACAACATAGACA 60.068 52.381 18.91 0.00 34.78 3.41
268 269 1.625616 CCACGGTCGACAACATAGAC 58.374 55.000 18.91 0.00 32.44 2.59
269 270 0.528924 CCCACGGTCGACAACATAGA 59.471 55.000 18.91 0.00 0.00 1.98
270 271 1.082117 GCCCACGGTCGACAACATAG 61.082 60.000 18.91 2.13 0.00 2.23
271 272 1.079681 GCCCACGGTCGACAACATA 60.080 57.895 18.91 0.00 0.00 2.29
272 273 2.358247 GCCCACGGTCGACAACAT 60.358 61.111 18.91 0.00 0.00 2.71
273 274 3.509137 GAGCCCACGGTCGACAACA 62.509 63.158 18.91 0.00 0.00 3.33
274 275 2.737376 GAGCCCACGGTCGACAAC 60.737 66.667 18.91 0.00 0.00 3.32
280 281 4.436998 CACCTCGAGCCCACGGTC 62.437 72.222 6.99 0.00 0.00 4.79
283 284 4.436998 GTCCACCTCGAGCCCACG 62.437 72.222 6.99 0.00 0.00 4.94
284 285 4.436998 CGTCCACCTCGAGCCCAC 62.437 72.222 6.99 0.00 0.00 4.61
285 286 4.671590 TCGTCCACCTCGAGCCCA 62.672 66.667 6.99 0.00 33.38 5.36
286 287 4.131088 GTCGTCCACCTCGAGCCC 62.131 72.222 6.99 0.00 37.99 5.19
287 288 3.343788 CTGTCGTCCACCTCGAGCC 62.344 68.421 6.99 0.00 37.99 4.70
288 289 2.179517 CTGTCGTCCACCTCGAGC 59.820 66.667 6.99 0.00 37.99 5.03
289 290 1.649390 CCTCTGTCGTCCACCTCGAG 61.649 65.000 5.13 5.13 37.99 4.04
290 291 1.674651 CCTCTGTCGTCCACCTCGA 60.675 63.158 0.00 0.00 34.91 4.04
291 292 2.878429 CCTCTGTCGTCCACCTCG 59.122 66.667 0.00 0.00 0.00 4.63
292 293 2.219325 CTGCCTCTGTCGTCCACCTC 62.219 65.000 0.00 0.00 0.00 3.85
293 294 2.203640 TGCCTCTGTCGTCCACCT 60.204 61.111 0.00 0.00 0.00 4.00
294 295 2.262915 CTGCCTCTGTCGTCCACC 59.737 66.667 0.00 0.00 0.00 4.61
295 296 2.433318 GCTGCCTCTGTCGTCCAC 60.433 66.667 0.00 0.00 0.00 4.02
296 297 4.056125 CGCTGCCTCTGTCGTCCA 62.056 66.667 0.00 0.00 0.00 4.02
297 298 3.973267 GACGCTGCCTCTGTCGTCC 62.973 68.421 2.61 0.00 43.67 4.79
298 299 2.505118 GACGCTGCCTCTGTCGTC 60.505 66.667 0.00 0.00 43.23 4.20
299 300 2.640302 ATGACGCTGCCTCTGTCGT 61.640 57.895 0.00 0.00 37.92 4.34
300 301 2.163390 CATGACGCTGCCTCTGTCG 61.163 63.158 0.00 0.00 35.40 4.35
301 302 1.812922 CCATGACGCTGCCTCTGTC 60.813 63.158 0.00 0.00 0.00 3.51
302 303 2.267006 CCATGACGCTGCCTCTGT 59.733 61.111 0.00 0.00 0.00 3.41
303 304 1.812922 GTCCATGACGCTGCCTCTG 60.813 63.158 0.00 0.00 0.00 3.35
304 305 2.581354 GTCCATGACGCTGCCTCT 59.419 61.111 0.00 0.00 0.00 3.69
305 306 2.512515 GGTCCATGACGCTGCCTC 60.513 66.667 0.00 0.00 32.65 4.70
306 307 2.596851 AAGGTCCATGACGCTGCCT 61.597 57.895 0.00 0.00 32.65 4.75
307 308 2.045926 AAGGTCCATGACGCTGCC 60.046 61.111 0.00 0.00 32.65 4.85
308 309 1.237285 AACAAGGTCCATGACGCTGC 61.237 55.000 0.00 0.00 32.65 5.25
309 310 0.518636 CAACAAGGTCCATGACGCTG 59.481 55.000 0.00 0.00 32.65 5.18
310 311 0.396435 TCAACAAGGTCCATGACGCT 59.604 50.000 0.00 0.00 32.65 5.07
311 312 1.131126 CATCAACAAGGTCCATGACGC 59.869 52.381 0.00 0.00 32.65 5.19
327 328 2.261361 CCACGGTCGACAGCATCA 59.739 61.111 18.91 0.00 0.00 3.07
362 363 4.856801 GGTCCATGACGCCGCCAT 62.857 66.667 0.00 0.00 32.65 4.40
448 449 2.478335 ATTCGTCCCCGGTGTGCATT 62.478 55.000 0.00 0.00 33.95 3.56
502 503 0.609406 TCAGTGTCTCCTCCTCCACG 60.609 60.000 0.00 0.00 33.14 4.94
521 522 1.956629 GACATCACCATCGACCCCGT 61.957 60.000 0.00 0.00 37.05 5.28
522 523 1.227263 GACATCACCATCGACCCCG 60.227 63.158 0.00 0.00 37.07 5.73
537 541 1.272592 TGGTCATACCCAGTACCGACA 60.273 52.381 0.00 0.00 37.50 4.35
550 554 3.087253 CCACCGGCCCTGGTCATA 61.087 66.667 0.00 0.00 41.38 2.15
584 588 1.860759 CACGACTCGACTCGACTGT 59.139 57.895 19.23 0.00 37.11 3.55
588 592 1.062148 CTAATGCACGACTCGACTCGA 59.938 52.381 19.23 0.29 37.11 4.04
637 641 2.612471 CGCATCCTTCATCTCCAGGATC 60.612 54.545 0.00 0.00 45.40 3.36
661 665 3.553096 CCAAGGAGCAGACGATATGGTAC 60.553 52.174 0.00 0.00 0.00 3.34
725 729 2.149803 AATTCCACTGGCGACGACGA 62.150 55.000 12.29 0.00 42.66 4.20
736 740 5.711976 CCACACTTGATTCCTTAATTCCACT 59.288 40.000 0.00 0.00 0.00 4.00
743 747 7.889873 TTTTCTTCCACACTTGATTCCTTAA 57.110 32.000 0.00 0.00 0.00 1.85
744 748 7.889873 TTTTTCTTCCACACTTGATTCCTTA 57.110 32.000 0.00 0.00 0.00 2.69
745 749 6.790232 TTTTTCTTCCACACTTGATTCCTT 57.210 33.333 0.00 0.00 0.00 3.36
779 785 0.996762 ACCACCCTTTCACCCCTTGA 60.997 55.000 0.00 0.00 0.00 3.02
789 799 4.621087 GCCAGGCCACCACCCTTT 62.621 66.667 5.01 0.00 0.00 3.11
817 827 5.753921 GTCGGTAGATAGAAATTCTTGGGTG 59.246 44.000 0.00 0.00 0.00 4.61
837 847 2.804368 GATCGGCCAGCGATAGTCGG 62.804 65.000 2.24 0.00 40.84 4.79
908 918 2.124695 GAAGGGGTCGGCATGGAC 60.125 66.667 0.00 0.00 36.18 4.02
909 919 2.285368 AGAAGGGGTCGGCATGGA 60.285 61.111 0.00 0.00 0.00 3.41
910 920 2.190578 GAGAAGGGGTCGGCATGG 59.809 66.667 0.00 0.00 0.00 3.66
911 921 1.144936 GAGAGAAGGGGTCGGCATG 59.855 63.158 0.00 0.00 0.00 4.06
912 922 2.427245 CGAGAGAAGGGGTCGGCAT 61.427 63.158 0.00 0.00 0.00 4.40
913 923 3.068691 CGAGAGAAGGGGTCGGCA 61.069 66.667 0.00 0.00 0.00 5.69
914 924 2.754658 TCGAGAGAAGGGGTCGGC 60.755 66.667 0.00 0.00 37.03 5.54
915 925 2.776913 GCTCGAGAGAAGGGGTCGG 61.777 68.421 18.75 0.00 41.32 4.79
1180 1195 0.673956 GGAAAGTTGAGCTCCGGGAC 60.674 60.000 12.15 4.95 0.00 4.46
1315 1348 2.833913 GGGGCACGATGATGGGGAT 61.834 63.158 0.00 0.00 0.00 3.85
1339 1372 2.097629 TGAAGATGACTAGTTCGCCGAG 59.902 50.000 0.00 0.00 0.00 4.63
1351 1384 2.208431 CCGCCTGAGATTGAAGATGAC 58.792 52.381 0.00 0.00 0.00 3.06
1425 1458 1.850998 TCTAGGTCGAGGGAGATCCAA 59.149 52.381 0.47 0.00 38.24 3.53
1539 1572 0.037326 GCGAGGAGACAACATCACCA 60.037 55.000 0.00 0.00 40.41 4.17
1545 1578 1.532604 ATCGTGGCGAGGAGACAACA 61.533 55.000 0.00 0.00 41.33 3.33
1546 1579 1.078759 CATCGTGGCGAGGAGACAAC 61.079 60.000 0.00 0.00 41.33 3.32
1581 1614 2.408022 GCGTCGCGTAGGATGAGT 59.592 61.111 5.77 0.00 0.00 3.41
1642 1678 8.924511 AGTAACACATTATCCATCCCTATTTG 57.075 34.615 0.00 0.00 0.00 2.32
1672 1708 2.593436 CGGACCCAAGGCGTTGTT 60.593 61.111 17.23 4.45 30.95 2.83
1756 1792 0.034670 GGAGCCATGACAAGGAGCTT 60.035 55.000 0.00 0.00 32.97 3.74
1773 1809 5.072055 TCTTTCAATGAAATGAGTGCAGGA 58.928 37.500 9.02 0.00 30.85 3.86
1843 1879 1.318158 GGGGCTGAGATGTTGGCAAG 61.318 60.000 0.00 0.00 0.00 4.01
1865 1901 0.868406 CCACTCAAGAAACGTGAGCC 59.132 55.000 12.81 0.00 45.35 4.70
1909 1945 0.822164 GCCATCTTGCCAAGCTGAAT 59.178 50.000 9.76 0.00 0.00 2.57
1975 2011 4.487948 CGATTGTGTGCAAAATCCTCATT 58.512 39.130 8.92 0.00 38.21 2.57
2050 2086 3.170717 TGGAACTCACCTTCCGATAGTT 58.829 45.455 0.00 0.00 42.57 2.24
2298 2418 6.128282 GCTAGTGTTCAGCTTTAATGCTAACA 60.128 38.462 21.06 21.06 41.98 2.41
2308 2428 4.154918 GCAGTAATGCTAGTGTTCAGCTTT 59.845 41.667 8.13 0.00 39.83 3.51
2315 2435 4.466370 TCCTAGTGCAGTAATGCTAGTGTT 59.534 41.667 17.03 0.00 35.49 3.32
2318 2438 5.878406 AATCCTAGTGCAGTAATGCTAGT 57.122 39.130 17.03 8.22 35.49 2.57
2323 2443 7.849804 ACAACTAAATCCTAGTGCAGTAATG 57.150 36.000 2.26 0.00 0.00 1.90
2372 2587 2.768527 TCCTGAGAGTTCATGTCCCATC 59.231 50.000 0.00 0.00 31.68 3.51
2396 2611 5.048083 GGACTGCTGGTGTTCATATTTTTCA 60.048 40.000 0.00 0.00 0.00 2.69
2403 2618 2.371841 ACAAGGACTGCTGGTGTTCATA 59.628 45.455 0.00 0.00 0.00 2.15
2442 2657 2.595463 CTGTGTGTGCTGGTGGGG 60.595 66.667 0.00 0.00 0.00 4.96
2500 2715 9.729281 GGAGGATTATATATAACGGTTGGAAAA 57.271 33.333 7.34 0.00 0.00 2.29
2501 2716 9.108111 AGGAGGATTATATATAACGGTTGGAAA 57.892 33.333 7.34 0.00 0.00 3.13
2502 2717 8.674925 AGGAGGATTATATATAACGGTTGGAA 57.325 34.615 7.34 0.00 0.00 3.53
2557 2775 1.267121 AGTAGCGTTGGTGGTCAGAT 58.733 50.000 0.00 0.00 0.00 2.90
2594 2812 3.365472 AGAATAAAACATGTGGGAGCCC 58.635 45.455 0.00 0.00 0.00 5.19
2599 2817 4.217550 ACGGACAAGAATAAAACATGTGGG 59.782 41.667 0.00 0.00 0.00 4.61
2603 2821 9.458374 AACTTTTACGGACAAGAATAAAACATG 57.542 29.630 0.00 0.00 0.00 3.21
2606 2824 7.096353 GGCAACTTTTACGGACAAGAATAAAAC 60.096 37.037 0.00 0.00 0.00 2.43
2626 2844 0.960364 AATGTCCATTCGCGGCAACT 60.960 50.000 6.13 0.00 0.00 3.16
2629 2847 2.112198 GGAATGTCCATTCGCGGCA 61.112 57.895 6.13 0.00 46.11 5.69
2632 2850 1.202177 CCAAAGGAATGTCCATTCGCG 60.202 52.381 12.51 0.00 46.11 5.87
2640 2858 0.813821 GCTGGCTCCAAAGGAATGTC 59.186 55.000 0.00 0.00 0.00 3.06
2670 2888 1.273606 CACCAGTACACACCCTGAGAG 59.726 57.143 0.00 0.00 0.00 3.20
2678 2896 4.211374 CAGCTTTCTTACACCAGTACACAC 59.789 45.833 0.00 0.00 0.00 3.82
2723 2941 1.275291 CTTTACCTCGAGTTGCCTGGA 59.725 52.381 12.31 0.00 0.00 3.86
2734 2952 7.980099 ACAGATTAAGGATGTAACTTTACCTCG 59.020 37.037 0.00 0.00 31.58 4.63
2804 3182 7.394641 TGTGCATAAAAATGGAAGTACATACCA 59.605 33.333 7.84 7.84 38.09 3.25
2805 3183 7.700656 GTGTGCATAAAAATGGAAGTACATACC 59.299 37.037 0.00 0.00 0.00 2.73
2806 3184 8.458843 AGTGTGCATAAAAATGGAAGTACATAC 58.541 33.333 0.00 0.00 0.00 2.39
2829 3207 1.270550 CTAGCAACCCAAGCCAAAGTG 59.729 52.381 0.00 0.00 0.00 3.16
2847 3225 7.732996 AGTTTGAAGAGCAAGTAAGGTAACTA 58.267 34.615 0.00 0.00 42.24 2.24
2852 3230 6.775594 AAAAGTTTGAAGAGCAAGTAAGGT 57.224 33.333 0.00 0.00 37.87 3.50
2856 3234 8.736244 ACTTTGTAAAAGTTTGAAGAGCAAGTA 58.264 29.630 0.00 0.00 37.87 2.24
2875 3266 5.822204 ACCCAATTAGTATGCCACTTTGTA 58.178 37.500 0.00 0.00 38.80 2.41
2916 3307 7.148018 ACAGGGATCTTACAAAATGCAACATAG 60.148 37.037 0.00 0.00 0.00 2.23
2917 3308 6.663093 ACAGGGATCTTACAAAATGCAACATA 59.337 34.615 0.00 0.00 0.00 2.29
2918 3309 5.481473 ACAGGGATCTTACAAAATGCAACAT 59.519 36.000 0.00 0.00 0.00 2.71
2929 3320 5.560722 TTTCAACAGACAGGGATCTTACA 57.439 39.130 0.00 0.00 0.00 2.41
2931 3322 6.778821 TGATTTTCAACAGACAGGGATCTTA 58.221 36.000 0.00 0.00 0.00 2.10
2938 3329 6.624352 TTTCTCTGATTTTCAACAGACAGG 57.376 37.500 0.00 0.00 38.08 4.00
2940 3331 8.786898 CCTAATTTCTCTGATTTTCAACAGACA 58.213 33.333 0.00 0.00 38.08 3.41
2941 3332 8.239998 CCCTAATTTCTCTGATTTTCAACAGAC 58.760 37.037 0.00 0.00 38.08 3.51
2942 3333 7.094205 GCCCTAATTTCTCTGATTTTCAACAGA 60.094 37.037 0.00 0.00 40.22 3.41
2943 3334 7.031975 GCCCTAATTTCTCTGATTTTCAACAG 58.968 38.462 0.00 0.00 35.72 3.16
2944 3335 6.071391 GGCCCTAATTTCTCTGATTTTCAACA 60.071 38.462 0.00 0.00 0.00 3.33
2945 3336 6.333416 GGCCCTAATTTCTCTGATTTTCAAC 58.667 40.000 0.00 0.00 0.00 3.18
2962 3354 2.982339 TTTGCTGTAAAGGGCCCTAA 57.018 45.000 28.96 14.59 0.00 2.69
2985 3377 2.843701 AGAGGAAGTGCTCAGTTGTTG 58.156 47.619 2.51 0.00 0.00 3.33
2987 3379 2.703007 AGAAGAGGAAGTGCTCAGTTGT 59.297 45.455 2.51 0.00 0.00 3.32
2988 3380 3.006752 AGAGAAGAGGAAGTGCTCAGTTG 59.993 47.826 2.51 0.00 0.00 3.16
2992 3384 1.274728 GCAGAGAAGAGGAAGTGCTCA 59.725 52.381 2.51 0.00 0.00 4.26
2993 3385 1.550072 AGCAGAGAAGAGGAAGTGCTC 59.450 52.381 0.00 0.00 36.55 4.26
2994 3386 1.550072 GAGCAGAGAAGAGGAAGTGCT 59.450 52.381 0.00 0.00 43.78 4.40
2995 3387 1.550072 AGAGCAGAGAAGAGGAAGTGC 59.450 52.381 0.00 0.00 0.00 4.40
2997 3389 4.316025 AGTAGAGCAGAGAAGAGGAAGT 57.684 45.455 0.00 0.00 0.00 3.01
3053 3445 7.661847 CCATTATAAAAGACCCTCCACTGATAC 59.338 40.741 0.00 0.00 0.00 2.24
3056 3448 5.491078 ACCATTATAAAAGACCCTCCACTGA 59.509 40.000 0.00 0.00 0.00 3.41
3058 3450 6.217693 AGAACCATTATAAAAGACCCTCCACT 59.782 38.462 0.00 0.00 0.00 4.00
3059 3451 6.318900 CAGAACCATTATAAAAGACCCTCCAC 59.681 42.308 0.00 0.00 0.00 4.02
3066 3458 9.191995 CCAAACAACAGAACCATTATAAAAGAC 57.808 33.333 0.00 0.00 0.00 3.01
3087 3479 0.693049 TCAGGAAGAGGGAGCCAAAC 59.307 55.000 0.00 0.00 0.00 2.93
3092 3484 1.625818 TGTTCTTCAGGAAGAGGGAGC 59.374 52.381 11.22 3.38 46.80 4.70
3150 3546 5.756833 ACAGTAACAAAAGCACACTACCTAC 59.243 40.000 0.00 0.00 0.00 3.18
3159 3555 4.326009 CACCAACAACAGTAACAAAAGCAC 59.674 41.667 0.00 0.00 0.00 4.40
3171 3567 3.346315 TGAGATATGCCACCAACAACAG 58.654 45.455 0.00 0.00 0.00 3.16
3183 3579 7.976135 ATGACCTGAATACTTTGAGATATGC 57.024 36.000 0.00 0.00 0.00 3.14
3213 3609 6.883744 AGAGAGAGGTGAAACTGGAAATATC 58.116 40.000 0.00 0.00 36.74 1.63
3287 3683 2.796593 GTTTGAGCCTGAAACAACATGC 59.203 45.455 1.69 0.00 34.13 4.06
3288 3684 4.311816 AGTTTGAGCCTGAAACAACATG 57.688 40.909 9.44 0.00 36.03 3.21
3318 3714 0.316204 GATGGCATATGCAACCCAGC 59.684 55.000 28.07 15.83 44.36 4.85
3435 3831 1.403647 GCCCAATTAAGCAACCGTTCC 60.404 52.381 0.00 0.00 0.00 3.62
3549 3945 6.365789 CGTAAAATTTCATGCATGTTTCCAGT 59.634 34.615 25.43 9.94 0.00 4.00
3551 3947 6.145209 CACGTAAAATTTCATGCATGTTTCCA 59.855 34.615 25.43 3.60 0.00 3.53
3577 3973 1.920574 CTTCTCGTACAAGCCACGATG 59.079 52.381 0.00 0.00 46.38 3.84
3579 3975 0.242825 CCTTCTCGTACAAGCCACGA 59.757 55.000 0.00 0.00 45.51 4.35
3593 3989 3.178865 TCAGGAAAATACGGGACCTTCT 58.821 45.455 0.00 0.00 0.00 2.85
3607 4003 1.271926 GGTGCCTTAGCCTTCAGGAAA 60.272 52.381 0.00 0.00 38.69 3.13
3653 4049 3.509575 AGTGCTGTTGACACCAAAAAGAA 59.490 39.130 0.00 0.00 38.87 2.52
3655 4051 3.129287 AGAGTGCTGTTGACACCAAAAAG 59.871 43.478 0.00 0.00 38.87 2.27
3656 4052 3.088532 AGAGTGCTGTTGACACCAAAAA 58.911 40.909 0.00 0.00 38.87 1.94
3703 4101 5.862678 TGATATCGTAACATCTTGGACCA 57.137 39.130 0.00 0.00 0.00 4.02
3719 4117 9.622004 CATCTTGCAAAATAGGTTGATGATATC 57.378 33.333 13.06 0.00 33.92 1.63
3722 4120 7.414222 ACATCTTGCAAAATAGGTTGATGAT 57.586 32.000 21.12 5.98 35.45 2.45
3748 4146 3.003689 AGACAAAACATGAAGCAGGTTCG 59.996 43.478 0.00 0.00 37.38 3.95
3753 4151 4.675510 ACAACAGACAAAACATGAAGCAG 58.324 39.130 0.00 0.00 0.00 4.24
3766 4164 1.679153 TCGTGAGCAGTACAACAGACA 59.321 47.619 0.00 0.00 0.00 3.41
3767 4165 2.417339 TCGTGAGCAGTACAACAGAC 57.583 50.000 0.00 0.00 0.00 3.51
3810 4215 4.439289 GGATCTTACACATCAAAGGCTTGC 60.439 45.833 0.00 0.00 32.14 4.01
3821 4226 6.343716 TGCAAACATTTGGATCTTACACAT 57.656 33.333 6.49 0.00 38.57 3.21
3834 4239 3.181463 ACCACTTCTGCATGCAAACATTT 60.181 39.130 22.88 0.98 32.87 2.32
3838 4243 2.554032 ACTACCACTTCTGCATGCAAAC 59.446 45.455 22.88 0.00 0.00 2.93
3841 4268 1.347378 TCACTACCACTTCTGCATGCA 59.653 47.619 21.29 21.29 0.00 3.96
3849 4278 5.542779 ACTTGATGAGTTCACTACCACTTC 58.457 41.667 0.00 0.00 33.92 3.01
3884 4313 5.064579 TGCCACAGATAACACAATCATTACG 59.935 40.000 0.00 0.00 0.00 3.18
3887 4316 5.012239 AGTGCCACAGATAACACAATCATT 58.988 37.500 0.00 0.00 35.47 2.57
3922 4351 7.443272 AGCTTTCTTGCAGATTTTTAAATGCTT 59.557 29.630 11.62 0.00 34.99 3.91
3936 4365 2.357009 ACACTGAACAGCTTTCTTGCAG 59.643 45.455 1.46 0.00 34.99 4.41
3946 4375 2.423538 AGACAAAACCACACTGAACAGC 59.576 45.455 1.46 0.00 0.00 4.40
3998 4427 5.626955 GCATGAAAGTGAACTAGTTTGCTTC 59.373 40.000 19.21 15.05 32.13 3.86
4055 4484 7.175347 TCATGTACTCAGAGAAAATAGCTGT 57.825 36.000 3.79 0.00 0.00 4.40
4068 4497 7.871973 CCTTCAAATCTAGGATCATGTACTCAG 59.128 40.741 0.00 0.00 33.13 3.35
4084 4513 9.612066 TTTGCAAATTAGTTTTCCTTCAAATCT 57.388 25.926 8.05 0.00 0.00 2.40
4107 4536 5.922544 CACAAGGGAAAAATAGCTCTGTTTG 59.077 40.000 0.00 0.00 0.00 2.93
4119 4548 4.543590 TTTCACAAGCACAAGGGAAAAA 57.456 36.364 0.00 0.00 0.00 1.94
4159 4589 7.150783 AGAGATAAAGCTCACAAACAAATCC 57.849 36.000 0.00 0.00 37.37 3.01
4188 4618 7.732593 TCCTTTTCCCTTTCCATCATAAAAGAA 59.267 33.333 0.00 0.00 35.50 2.52
4189 4619 7.245292 TCCTTTTCCCTTTCCATCATAAAAGA 58.755 34.615 0.00 0.00 35.50 2.52
4203 4633 7.244558 AGATCTCTGATTTTTCCTTTTCCCTT 58.755 34.615 0.00 0.00 0.00 3.95
4224 4654 7.284034 TGCATTATCTTTTCCTTTCCAGAGATC 59.716 37.037 0.00 0.00 0.00 2.75
4232 4662 6.393171 ACTTGCTGCATTATCTTTTCCTTTC 58.607 36.000 1.84 0.00 0.00 2.62
4257 4687 0.378962 CAGGAGCTTCGACTAGACCG 59.621 60.000 0.00 0.00 0.00 4.79
4303 4733 4.473199 CACTTCTAAGTCGAACGTGATCA 58.527 43.478 0.00 0.00 37.08 2.92
4318 4748 6.503524 GTGGACTTTTCATTTTGCACTTCTA 58.496 36.000 0.00 0.00 0.00 2.10
4338 4768 2.613691 GATCTTTTTAGTCCGCGTGGA 58.386 47.619 15.21 15.21 43.88 4.02
4339 4769 1.323534 CGATCTTTTTAGTCCGCGTGG 59.676 52.381 9.28 9.28 0.00 4.94
4340 4770 1.266891 GCGATCTTTTTAGTCCGCGTG 60.267 52.381 4.92 0.00 33.42 5.34
4341 4771 0.997196 GCGATCTTTTTAGTCCGCGT 59.003 50.000 4.92 0.00 33.42 6.01
4342 4772 0.996462 TGCGATCTTTTTAGTCCGCG 59.004 50.000 0.00 0.00 44.76 6.46
4343 4773 1.730064 TGTGCGATCTTTTTAGTCCGC 59.270 47.619 0.00 0.00 42.52 5.54
4344 4774 2.348666 CCTGTGCGATCTTTTTAGTCCG 59.651 50.000 0.00 0.00 0.00 4.79
4345 4775 2.678336 CCCTGTGCGATCTTTTTAGTCC 59.322 50.000 0.00 0.00 0.00 3.85
4346 4776 2.096013 GCCCTGTGCGATCTTTTTAGTC 59.904 50.000 0.00 0.00 0.00 2.59
4347 4777 2.084546 GCCCTGTGCGATCTTTTTAGT 58.915 47.619 0.00 0.00 0.00 2.24
4348 4778 2.832672 GCCCTGTGCGATCTTTTTAG 57.167 50.000 0.00 0.00 0.00 1.85
4359 4789 0.102300 AAAAACAACGAGCCCTGTGC 59.898 50.000 0.00 0.00 41.71 4.57
4382 4812 2.761208 CCTATGTCTATCGCCTTAGGGG 59.239 54.545 9.22 9.22 36.96 4.79
4383 4813 2.761208 CCCTATGTCTATCGCCTTAGGG 59.239 54.545 0.00 0.00 40.33 3.53
4384 4814 3.432378 ACCCTATGTCTATCGCCTTAGG 58.568 50.000 0.00 0.00 0.00 2.69
4385 4815 5.470047 AAACCCTATGTCTATCGCCTTAG 57.530 43.478 0.00 0.00 0.00 2.18
4386 4816 4.022589 CGAAACCCTATGTCTATCGCCTTA 60.023 45.833 0.00 0.00 0.00 2.69
4387 4817 3.243771 CGAAACCCTATGTCTATCGCCTT 60.244 47.826 0.00 0.00 0.00 4.35
4388 4818 2.296471 CGAAACCCTATGTCTATCGCCT 59.704 50.000 0.00 0.00 0.00 5.52
4389 4819 2.295349 TCGAAACCCTATGTCTATCGCC 59.705 50.000 0.00 0.00 31.44 5.54
4390 4820 3.243301 TGTCGAAACCCTATGTCTATCGC 60.243 47.826 0.00 0.00 31.44 4.58
4391 4821 4.563337 TGTCGAAACCCTATGTCTATCG 57.437 45.455 0.00 0.00 0.00 2.92
4392 4822 6.334102 AGATGTCGAAACCCTATGTCTATC 57.666 41.667 0.00 0.00 0.00 2.08
4393 4823 6.239345 GGAAGATGTCGAAACCCTATGTCTAT 60.239 42.308 0.00 0.00 0.00 1.98
4394 4824 5.068723 GGAAGATGTCGAAACCCTATGTCTA 59.931 44.000 0.00 0.00 0.00 2.59
4395 4825 4.141914 GGAAGATGTCGAAACCCTATGTCT 60.142 45.833 0.00 0.00 0.00 3.41
4396 4826 4.120589 GGAAGATGTCGAAACCCTATGTC 58.879 47.826 0.00 0.00 0.00 3.06
4397 4827 3.430374 CGGAAGATGTCGAAACCCTATGT 60.430 47.826 0.00 0.00 0.00 2.29
4398 4828 3.123804 CGGAAGATGTCGAAACCCTATG 58.876 50.000 0.00 0.00 0.00 2.23
4399 4829 2.102588 CCGGAAGATGTCGAAACCCTAT 59.897 50.000 0.00 0.00 0.00 2.57
4400 4830 1.479323 CCGGAAGATGTCGAAACCCTA 59.521 52.381 0.00 0.00 0.00 3.53
4401 4831 0.249398 CCGGAAGATGTCGAAACCCT 59.751 55.000 0.00 0.00 0.00 4.34
4402 4832 0.743345 CCCGGAAGATGTCGAAACCC 60.743 60.000 0.73 0.00 0.00 4.11
4403 4833 0.743345 CCCCGGAAGATGTCGAAACC 60.743 60.000 0.73 0.00 0.00 3.27
4404 4834 0.743345 CCCCCGGAAGATGTCGAAAC 60.743 60.000 0.73 0.00 0.00 2.78
4405 4835 1.600107 CCCCCGGAAGATGTCGAAA 59.400 57.895 0.73 0.00 0.00 3.46
4406 4836 3.026431 GCCCCCGGAAGATGTCGAA 62.026 63.158 0.73 0.00 0.00 3.71
4407 4837 3.467226 GCCCCCGGAAGATGTCGA 61.467 66.667 0.73 0.00 0.00 4.20
4408 4838 4.891727 CGCCCCCGGAAGATGTCG 62.892 72.222 0.73 0.00 0.00 4.35
4411 4841 4.918201 GAGCGCCCCCGGAAGATG 62.918 72.222 0.73 0.00 34.32 2.90
4423 4853 3.030882 GTAGATTCCGGCGAGCGC 61.031 66.667 9.30 6.27 41.06 5.92
4424 4854 2.354773 GGTAGATTCCGGCGAGCG 60.355 66.667 9.30 0.00 0.00 5.03
4425 4855 2.029221 GGGTAGATTCCGGCGAGC 59.971 66.667 9.30 0.00 0.00 5.03
4426 4856 0.038159 GATGGGTAGATTCCGGCGAG 60.038 60.000 9.30 0.00 0.00 5.03
4427 4857 1.802337 CGATGGGTAGATTCCGGCGA 61.802 60.000 9.30 0.00 0.00 5.54
4428 4858 1.372997 CGATGGGTAGATTCCGGCG 60.373 63.158 0.00 0.00 0.00 6.46
4429 4859 1.668151 GCGATGGGTAGATTCCGGC 60.668 63.158 0.00 0.00 0.00 6.13
4430 4860 1.004918 GGCGATGGGTAGATTCCGG 60.005 63.158 0.00 0.00 0.00 5.14
4431 4861 1.004918 GGGCGATGGGTAGATTCCG 60.005 63.158 0.00 0.00 0.00 4.30
4432 4862 1.004918 CGGGCGATGGGTAGATTCC 60.005 63.158 0.00 0.00 0.00 3.01
4433 4863 0.319641 GACGGGCGATGGGTAGATTC 60.320 60.000 0.00 0.00 0.00 2.52
4434 4864 1.746517 GACGGGCGATGGGTAGATT 59.253 57.895 0.00 0.00 0.00 2.40
4435 4865 2.561956 CGACGGGCGATGGGTAGAT 61.562 63.158 0.00 0.00 44.57 1.98
4436 4866 3.214123 CGACGGGCGATGGGTAGA 61.214 66.667 0.00 0.00 44.57 2.59
4437 4867 4.944372 GCGACGGGCGATGGGTAG 62.944 72.222 7.81 0.00 44.57 3.18
4442 4872 3.427425 TTTTGGCGACGGGCGATG 61.427 61.111 7.81 0.00 44.92 3.84
4443 4873 3.428282 GTTTTGGCGACGGGCGAT 61.428 61.111 7.81 0.00 44.92 4.58
4448 4878 4.653888 AGGGGGTTTTGGCGACGG 62.654 66.667 0.00 0.00 0.00 4.79
4449 4879 3.053896 GAGGGGGTTTTGGCGACG 61.054 66.667 0.00 0.00 0.00 5.12
4450 4880 3.053896 CGAGGGGGTTTTGGCGAC 61.054 66.667 0.00 0.00 0.00 5.19
4451 4881 3.243053 TCGAGGGGGTTTTGGCGA 61.243 61.111 0.00 0.00 0.00 5.54
4452 4882 3.053896 GTCGAGGGGGTTTTGGCG 61.054 66.667 0.00 0.00 0.00 5.69
4453 4883 2.675423 GGTCGAGGGGGTTTTGGC 60.675 66.667 0.00 0.00 0.00 4.52
4454 4884 2.035155 GGGTCGAGGGGGTTTTGG 59.965 66.667 0.00 0.00 0.00 3.28
4455 4885 2.035155 GGGGTCGAGGGGGTTTTG 59.965 66.667 0.00 0.00 0.00 2.44
4456 4886 2.121644 AGGGGTCGAGGGGGTTTT 60.122 61.111 0.00 0.00 0.00 2.43
4457 4887 2.609921 GAGGGGTCGAGGGGGTTT 60.610 66.667 0.00 0.00 0.00 3.27
4471 4901 1.739338 CTGCAGTACTAGCCCCGAGG 61.739 65.000 5.25 0.00 0.00 4.63
4472 4902 1.736586 CTGCAGTACTAGCCCCGAG 59.263 63.158 5.25 2.81 0.00 4.63
4473 4903 1.756950 CCTGCAGTACTAGCCCCGA 60.757 63.158 13.81 0.00 0.00 5.14
4474 4904 2.797278 CCCTGCAGTACTAGCCCCG 61.797 68.421 13.81 0.00 0.00 5.73
4475 4905 2.444256 CCCCTGCAGTACTAGCCCC 61.444 68.421 13.81 0.00 0.00 5.80
4476 4906 2.444256 CCCCCTGCAGTACTAGCCC 61.444 68.421 13.81 0.00 0.00 5.19
4477 4907 1.687297 GACCCCCTGCAGTACTAGCC 61.687 65.000 13.81 0.00 0.00 3.93
4478 4908 1.687297 GGACCCCCTGCAGTACTAGC 61.687 65.000 13.81 2.56 0.00 3.42
4479 4909 1.392710 CGGACCCCCTGCAGTACTAG 61.393 65.000 13.81 0.00 0.00 2.57
4480 4910 1.380785 CGGACCCCCTGCAGTACTA 60.381 63.158 13.81 0.00 0.00 1.82
4481 4911 2.683933 CGGACCCCCTGCAGTACT 60.684 66.667 13.81 0.00 0.00 2.73
4482 4912 3.782443 CCGGACCCCCTGCAGTAC 61.782 72.222 13.81 0.00 0.00 2.73
4483 4913 4.000620 TCCGGACCCCCTGCAGTA 62.001 66.667 13.81 0.00 0.00 2.74
4488 4918 3.537874 GATCGTCCGGACCCCCTG 61.538 72.222 28.52 14.29 0.00 4.45
4489 4919 3.752167 AGATCGTCCGGACCCCCT 61.752 66.667 28.52 18.50 0.00 4.79
4490 4920 3.537874 CAGATCGTCCGGACCCCC 61.538 72.222 28.52 16.58 0.00 5.40
4491 4921 4.222847 GCAGATCGTCCGGACCCC 62.223 72.222 28.52 16.93 0.00 4.95
4492 4922 3.140225 GAGCAGATCGTCCGGACCC 62.140 68.421 28.52 17.28 0.00 4.46
4493 4923 2.413765 GAGCAGATCGTCCGGACC 59.586 66.667 28.52 14.89 0.00 4.46
4494 4924 2.343163 CTGGAGCAGATCGTCCGGAC 62.343 65.000 25.28 25.28 41.23 4.79
4495 4925 2.044352 TGGAGCAGATCGTCCGGA 60.044 61.111 0.00 0.00 35.37 5.14
4496 4926 2.415010 CTGGAGCAGATCGTCCGG 59.585 66.667 0.00 0.00 35.37 5.14
4497 4927 2.279120 GCTGGAGCAGATCGTCCG 60.279 66.667 7.16 4.30 41.59 4.79
4498 4928 2.107953 GGCTGGAGCAGATCGTCC 59.892 66.667 0.20 5.17 44.36 4.79
4499 4929 1.227205 CAGGCTGGAGCAGATCGTC 60.227 63.158 6.61 0.00 44.36 4.20
4500 4930 2.729479 CCAGGCTGGAGCAGATCGT 61.729 63.158 29.96 0.00 40.96 3.73
4501 4931 2.108566 CCAGGCTGGAGCAGATCG 59.891 66.667 29.96 0.00 40.96 3.69
4502 4932 2.322638 GACCCAGGCTGGAGCAGATC 62.323 65.000 34.84 16.64 40.96 2.75
4503 4933 2.285969 ACCCAGGCTGGAGCAGAT 60.286 61.111 34.84 9.62 40.96 2.90
4504 4934 3.005539 GACCCAGGCTGGAGCAGA 61.006 66.667 34.84 0.00 40.96 4.26
4505 4935 4.106925 GGACCCAGGCTGGAGCAG 62.107 72.222 34.84 19.77 40.96 4.24
4508 4938 1.764054 CTAGGGACCCAGGCTGGAG 60.764 68.421 34.84 24.97 40.96 3.86
4509 4939 2.368594 CTAGGGACCCAGGCTGGA 59.631 66.667 34.84 12.73 40.96 3.86
4510 4940 2.770048 CCTAGGGACCCAGGCTGG 60.770 72.222 27.04 27.04 37.25 4.85
4511 4941 2.770048 CCCTAGGGACCCAGGCTG 60.770 72.222 24.99 7.75 37.50 4.85
4512 4942 4.825679 GCCCTAGGGACCCAGGCT 62.826 72.222 33.21 3.82 40.57 4.58
4522 4952 4.530857 CTTCCCACGCGCCCTAGG 62.531 72.222 5.73 0.06 0.00 3.02
4523 4953 3.432051 CTCTTCCCACGCGCCCTAG 62.432 68.421 5.73 0.00 0.00 3.02
4524 4954 3.458163 CTCTTCCCACGCGCCCTA 61.458 66.667 5.73 0.00 0.00 3.53
4526 4956 4.388499 TTCTCTTCCCACGCGCCC 62.388 66.667 5.73 0.00 0.00 6.13
4527 4957 2.815647 CTTCTCTTCCCACGCGCC 60.816 66.667 5.73 0.00 0.00 6.53
4528 4958 2.781595 TTCCTTCTCTTCCCACGCGC 62.782 60.000 5.73 0.00 0.00 6.86
4529 4959 0.737715 CTTCCTTCTCTTCCCACGCG 60.738 60.000 3.53 3.53 0.00 6.01
4530 4960 0.391793 CCTTCCTTCTCTTCCCACGC 60.392 60.000 0.00 0.00 0.00 5.34
4531 4961 1.205893 CTCCTTCCTTCTCTTCCCACG 59.794 57.143 0.00 0.00 0.00 4.94
4532 4962 2.499693 CTCTCCTTCCTTCTCTTCCCAC 59.500 54.545 0.00 0.00 0.00 4.61
4533 4963 2.560841 CCTCTCCTTCCTTCTCTTCCCA 60.561 54.545 0.00 0.00 0.00 4.37
4534 4964 2.115427 CCTCTCCTTCCTTCTCTTCCC 58.885 57.143 0.00 0.00 0.00 3.97
4535 4965 3.108847 TCCTCTCCTTCCTTCTCTTCC 57.891 52.381 0.00 0.00 0.00 3.46
4536 4966 4.093743 ACTTCCTCTCCTTCCTTCTCTTC 58.906 47.826 0.00 0.00 0.00 2.87
4537 4967 4.140575 ACTTCCTCTCCTTCCTTCTCTT 57.859 45.455 0.00 0.00 0.00 2.85
4538 4968 3.845109 ACTTCCTCTCCTTCCTTCTCT 57.155 47.619 0.00 0.00 0.00 3.10
4539 4969 4.901197 AAACTTCCTCTCCTTCCTTCTC 57.099 45.455 0.00 0.00 0.00 2.87
4540 4970 5.371176 AGAAAAACTTCCTCTCCTTCCTTCT 59.629 40.000 0.00 0.00 0.00 2.85
4541 4971 5.626142 AGAAAAACTTCCTCTCCTTCCTTC 58.374 41.667 0.00 0.00 0.00 3.46
4542 4972 5.654901 AGAAAAACTTCCTCTCCTTCCTT 57.345 39.130 0.00 0.00 0.00 3.36
4543 4973 5.103898 ACAAGAAAAACTTCCTCTCCTTCCT 60.104 40.000 0.00 0.00 36.61 3.36
4544 4974 5.133941 ACAAGAAAAACTTCCTCTCCTTCC 58.866 41.667 0.00 0.00 36.61 3.46
4545 4975 6.511929 CGAACAAGAAAAACTTCCTCTCCTTC 60.512 42.308 0.00 0.00 36.61 3.46
4546 4976 5.297029 CGAACAAGAAAAACTTCCTCTCCTT 59.703 40.000 0.00 0.00 36.61 3.36
4547 4977 4.816925 CGAACAAGAAAAACTTCCTCTCCT 59.183 41.667 0.00 0.00 36.61 3.69
4548 4978 4.814771 TCGAACAAGAAAAACTTCCTCTCC 59.185 41.667 0.00 0.00 36.61 3.71
4549 4979 5.753921 TCTCGAACAAGAAAAACTTCCTCTC 59.246 40.000 0.00 0.00 36.61 3.20
4550 4980 5.671493 TCTCGAACAAGAAAAACTTCCTCT 58.329 37.500 0.00 0.00 36.61 3.69
4551 4981 5.986004 TCTCGAACAAGAAAAACTTCCTC 57.014 39.130 0.00 0.00 36.61 3.71
4552 4982 5.470437 GGATCTCGAACAAGAAAAACTTCCT 59.530 40.000 0.00 0.00 36.61 3.36
4553 4983 5.614887 CGGATCTCGAACAAGAAAAACTTCC 60.615 44.000 0.00 0.00 42.43 3.46
4554 4984 5.176958 TCGGATCTCGAACAAGAAAAACTTC 59.823 40.000 4.13 0.00 45.86 3.01
4555 4985 5.054477 TCGGATCTCGAACAAGAAAAACTT 58.946 37.500 4.13 0.00 45.86 2.66
4556 4986 4.628074 TCGGATCTCGAACAAGAAAAACT 58.372 39.130 4.13 0.00 45.86 2.66
4557 4987 4.985044 TCGGATCTCGAACAAGAAAAAC 57.015 40.909 4.13 0.00 45.86 2.43
4569 4999 1.274126 CGCTGCTTGATCGGATCTCG 61.274 60.000 18.16 10.31 40.90 4.04
4570 5000 0.031314 TCGCTGCTTGATCGGATCTC 59.969 55.000 18.16 8.56 0.00 2.75
4571 5001 0.678395 ATCGCTGCTTGATCGGATCT 59.322 50.000 18.16 0.00 0.00 2.75
4572 5002 0.788995 CATCGCTGCTTGATCGGATC 59.211 55.000 11.07 11.07 0.00 3.36
4573 5003 0.602106 CCATCGCTGCTTGATCGGAT 60.602 55.000 0.00 0.00 0.00 4.18
4574 5004 1.227350 CCATCGCTGCTTGATCGGA 60.227 57.895 0.00 0.00 0.00 4.55
4575 5005 2.890109 GCCATCGCTGCTTGATCGG 61.890 63.158 0.00 0.84 0.00 4.18
4576 5006 1.886313 AGCCATCGCTGCTTGATCG 60.886 57.895 0.00 0.00 46.19 3.69
4577 5007 4.137879 AGCCATCGCTGCTTGATC 57.862 55.556 0.00 0.00 46.19 2.92
4586 5016 3.267860 CGCTCCTTCAGCCATCGC 61.268 66.667 0.00 0.00 46.74 4.58
4587 5017 2.587194 CCGCTCCTTCAGCCATCG 60.587 66.667 0.00 0.00 46.74 3.84
4588 5018 2.049627 ATCCCGCTCCTTCAGCCATC 62.050 60.000 0.00 0.00 46.74 3.51
4589 5019 2.049627 GATCCCGCTCCTTCAGCCAT 62.050 60.000 0.00 0.00 46.74 4.40
4590 5020 2.688666 ATCCCGCTCCTTCAGCCA 60.689 61.111 0.00 0.00 46.74 4.75
4591 5021 2.110006 GATCCCGCTCCTTCAGCC 59.890 66.667 0.00 0.00 46.74 4.85
4592 5022 2.279784 CGATCCCGCTCCTTCAGC 60.280 66.667 0.00 0.00 45.85 4.26
4602 5032 4.598894 CCAGCCTCTGCGATCCCG 62.599 72.222 0.00 0.00 44.33 5.14
4603 5033 4.247380 CCCAGCCTCTGCGATCCC 62.247 72.222 0.00 0.00 44.33 3.85
4604 5034 4.247380 CCCCAGCCTCTGCGATCC 62.247 72.222 0.00 0.00 44.33 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.