>input_sequence_30071
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------------------------------------------------------ATGGAGCAGAGCGATGGGCCCAAGCG
ACCGAAGCTCGCCGACGCCGCCGACGGCGACGAGGACCGCCTCAGCGTGCTGCCCGACGACATTCTCATCCACATCCTCG
TCAAGCTCCGCTGCACCCCCATGGCCGCTCGGACCAGCGTCCTCTGCCGCCGCTGGCGTGGCCTCTGGAAGCTCGTCCCG
GAGCTCAACTTTCCCCTCGGCACCGAGCCGCACCG------------------CATACGCTCTGCCCTCACAGCCCACGA
AGCGCCGGTCATCCACTTCCTCGTCGTCGACCTCCAGGACGCCGCAGCGGAGTCGGTGGCGACGTGGATCCCCATCATCG
TGCCCCGCCTCCTCGGCGAACTAGTCATCTTCAATCTCAGGCGGGACTGGGATGGGGAAACAGGCACAGTTGAGCTGCCT
TGCTTCCAGGGTGCCGATTGGATCTCCCTCGACCTAGACAATCTTGGCCTCGCCCTGCCGCCCTCCGGCGTGTTTGCCCG
GCTCACCGATCTCTGTCTGGTAGCCGTTAGGATGCGTGGTCCCTGCAGACTTGGTGATGTTGTCTCCTCGCCACGATGCC
CATCGCTGCGGAAACTCATCCTACGCGACGCCCAGGTCCGGGATGACA---TTGTAATCCACTCAGAGTCTCTCTTACAA
ATAGGGATGGATAATGTGTTACTAGACAACAACGCCTTGGGTCCGGGCATCCTCGACATTTCCTCAGAGTCTGTCCTCCA
AATAGATCTGAAGAATTTAATTGGCGTGCGGAAGCTCCTTGTCATGGCTCCTGCACTCATTTCATTGAAAGAGAAAGACA
CCACCTACATTGCTGATCCTGTGGATCCGAGTCAACCACTTGCCAACATCTCAGCCCCTCGGCTCACGTTTCTTGAGTGG
AATGCTCGTTATGATAGAAGATCCATTCAGCTTGGCAAGATGGCACATCTCCAATGGCTGCACGCCGGTCAATTTCTTGT
ATATGGATCCAATGAGGATTTTGCACACAATCGCATCAGGCTTTTGCAGCGCTTCGAGTTCATCATCTGTCTTGACCTTG
CGCTTAACTATCGGAAGGTGAGTTCCATTCTTTCGTGATTATTTCATCATCATAATATGCTACCAAGTCAATAATAACAA
GGT-AAACATAGGGTTATGATATTTGCTATATTTGAGAAAGCATTACAGAATTCTCACTTGTTTGTCTTTGCTCATGTCT
GTGCAACATGGCTTAGTGCACTCAATCTTTATTCTTTCCCAATACGTTATATAGTTATCCTCTTAGATGGTA--------
---------------------------------------------------------------------------TTGCT
TTGTACCACCTTTGAGTTGTTAGCATTAAAGCTGAACACTAGCATTACTGCACTAGGATT--------------------
---------------------------------------------------------------------------TAGTT
GTTACTGAACTAGGATTTAGTTATTGGATGGGACATGAACTCTCAGGAGTTGAAAAATATGAACACCAGCAGTCCTTGTG
GCCGGATTGGATATCCCCCCACCAGCACACACAGAACCATTTGTAGTAAGAAAAATGAGTTTTGTGTGTCCCTTTTTTCC
AA---CCGTTATATATAATCCTCCTTTGTGACTTTCTATCAACCTGTAGGACATATCTGACCACCAACGCTACTTGATGG
AGGACATGCCAGGGCTCCCACATGTTTTATTCTTGTCCGTAAAAGTTGCCGCGAATGGACATTCCTTTGGAGCCAGCTTA
TTCCATGCTCTCAGGGTGTGTACTGGTGTAAGAAAGCTGACTCTTGCATTTGATGTCAGTTCCAGGCAACTCGAGGTAAA
GTTACATCCTTAATCTGTTTATCTAATA----------------------------------------------------
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----------------------------CTACTTGAGTTACCTGGAAAGTCACAATCTATTTGGTATGTACTTCCATTTT
TATGCACACTTTGGCTTGGGTTGCTAGTTACCTTAC-------------TTGCTCTTCAAACTTTTACAAAGTGGCATAC
TAATTGGGTTTGGTAGCTAGGTAATACTATGTTGCATTTTGTAAGATCCCTGTCTG-TTGAAAATCAGAGAAATTAGGGC
CCTTTACAGCAAAAAACAACAACTGAGCACTTCCTCTTCTCTGCTCTACTTTTTCAGAAAATTTAATATATTATTGAATG
TTATGTATCAGTGGAGGGTCTTTTATAATGGTTCTGTTGTTTGGCTCCCTCTTCCTGAAGAACAACCATATTTTCTGCAA
TA----GGTTGGCCCCAACTAATTTGTAGGTAGTGTGCTTTTGTTACTGTTGTTGGTGGCATATCTCAAAGTATTCAGGT
CATAGTTTGATATTTCCAGTTTCACCTCTCTCTTTTTACTACATCAAATCATACCAGTTATTCACTTATTCTTATTAAGC
CGGCATGTTGTTTCAGGCTCAAACTACATGCTCGCTGGGTTGCATATGCCATCAGCCACCAAACTGGAAAACTGACGAAC
TCCTGCTGAGTCACCTCATAATAATCGAAATCAGTGCCTGGAGAGGAACTGAAAATGAAGTTGCTTTTGTGGAACGGTTG
CTTAATTGGGCAACAGTGCTAAAAGAAATGACCATAACTTTCCATCAGTCAGTTACTGAAAGCAACGCCGAGGATCTCTG
CCAGACATTACTAAGCTTCTCTAGACTGGAAACATGCATGAAATTTTACGTGCATCGTGGCTTGTACGAGAAGGTCCCGT
ATTTTCCTGAAGGCTAA---------------------------------------------------------------
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>chr3B_1_TraesCS3B01G139300
CACCATGGATCGCGTTGACGATGTCGGCGGTGGCGACCTAGTGCGAGCATTCTGTCGAACATGTGACGGGCACCATCTCC
ATGCAATCAGGGGACGCATCATGGACGATCTGAAGGACCTCCGGAGCCTTGAAGTTGGAGAAGGAGACGTCGGTGGAGAC
TGCAGTGATAGTGGCTTCGATGGTGCGGTCGACTGCAAGCTCGACCGCTTGGTGGATGGGGTCGACCGTGGGATCGAGGT
GGACGGCGGTGGCGGTGCCATGGACCTTGTCTATGTTGTCGACCGTGGGCTCGAGGTGGACGACAGAGGCAGCGTCATGG
ACCTTGTTGATGCTGTCGACCGTGGGCTCGAGGTGGACGGCGATGGCGGCGTCATGGACCTCGTCGATGCTGTCGATGGT
GTCGACCTGGGTCGAGCACTCCGTCGAACAGGTGACGGGCACCATCGCAATGCACACCGGGGACGAATCATGGACGAGCT
CGAGGACCGCCGGGGCCTTGGCCGTGGAGGAGGAGACACTGACGGGGTCG---ATGGTGATGTCGGTACTGGGTATGACC
AGGGCCGGTGGTTTTTTAGACGAGGAAACAGTCGAGTCGAGTCGTGCATTAGCAGCAACGAGCTCAGCAGTCATGCCCTC
GATCCTGGAGATGAAGGATGCGAGGTACCATATCGTCTGCTCCTTGGCGGACATGGCATCCCACTCCGGTGGTAAGTCGG
CGGGCATGTCGTCGTCGCCAGTGGAATTA--AGGAATCAAGTGTGGAAGAAAAAATTGGGAAAATCA----AGGGGTGAA
AGGGTGGTGGCCTGGCTCTGACATTTCACCCAAGAATTTCTATCTACCGACTATCGCTGGCCGATCTCCACCAAATCTGC
AAACCCCCCAAACCCTAGCTCCCCCAAATCACCGTGCGTCCATGCCGACCCCTTCTCTCGAGCTCCAATTCACCGCAATG
GCGCAGTGTGATCCGTGCGTGTGAGAGGCGCC-----AAATCCCTCCTCCAACCATGGAGCAGAGCGATGGGCCCAAGCG
ACCGAAGCTCGCCGACGCCGCCGACGGCGACGAGGACCGCCTCAGCGTGCTGCCCGACGACATTCTCATCCACATCCTCG
TCAAGCTCCGCTGCACCCCCATGGCCGCTCGGACCAGCGTCCTCTGCCGCCGCTGGCGTGGCCTCTGGAAGCTCGTCCCG
GAGCTCAACTTTCCCCTCGGCACCGAGCCGCACCG------------------CATACGCTCTGCCCTCACAGCCCACGA
AGCGCCGGTCATCCACTTCCTCGTCGTCGACCTCCAGGACGCCGCAGCGGAGTCGGTGGCGACGTGGATCCCCATCATCG
TGCCCCGCCTCCTCGGCGAACTAGTCATCTTCAATCTCAGGCGGGACTGGGATGGGGAAACAGGCACAGTTGAGCTGCCT
TGCTTCCAGGGTGCCGATTGGATCTCCCTCGACCTAGACAATCTTGGCCTCGCCCTGCCGCCCTCCGGCGTGTTTGCCCG
GCTCACCGATCTCTGTCTGGTAGCCGTTAGGATGCGTGGTCCCTGCAGACTTGGTGATGTTGTCTCCTCGCCACGATGCC
CATCGCTGCGGAAACTCATCCTACGCGACGCCCAGGTCCGGGATGACA---TTGTAATCCACTCAGAGTCTCTCTTACAA
ATAGGGATGGATAATGTGTTACTAGACAACAACGCCTTGGGTCCGGGCATCCTCGACATTTCCTCAGAGTCTGTCCTCCA
AATAGATCTGAAGAATTTAATTGGCGTGCGGAAGCTCCTTGTCATGGCTCCTGCACTCATTTCATTGAAAGAGAAAGACA
CCACCTACATTGCTGATCCTGTGGATCCGAGTCAACCACTTGCCAACATCTCAGCCCCTCGGCTCACGTTTCTTGAGTGG
AATGCTCGTTATGATAGAAGATCCATTCAGCTTGGCAAGATGGCACATCTCCAATGGCTGCACGCCGGTCAATTTCTTGT
ATATGGATCCAATGAGGATTTTGCACACAATCGCATCAGGCTTTTGCAGCGCTTCGAGTTCATCATCTGTCTTGACCTTG
CGCTTAACTATCGGAAGGTGAGTTCCATTCTTTCGTGATTATTTCATCATCATAATATGCTACCAAGTCAATAATAACAA
GGT-AAACATAGGGTTATGATATTTGCTATATTTGAGAAAGCATTACAGAATTCTCACTTGTTTGTCTTTGCTCATGTCT
GTGCAACATGGCTTAGTGCACTCAATCTTTATTCTTTCCCAATACGTTATATAGTTATCCTCTTAGATGGTA--------
---------------------------------------------------------------------------TTGCT
TTGTACCACCTTTGAGTTGTTAGCATTAAAGCTGAACACTAGCATTACTGCACTAGGATT--------------------
---------------------------------------------------------------------------TAGTT
GTTACTGAACTAGGATTTAGTTATTGGATGGGACATGAACTCTCAGGAGTTGAAAAATATGAACACCAGCAGTCCTTGTG
GCCGGATTGGATATCCCCCCACCAGCACACACAGAACCATTTGTAGTAAGAAAAATGAGTTTTGTGTGTCCCTTTTTTCC
AA---CCGTTATATATAATCCTCCTTTGTGACTTTCTATCAACCTGTAGGACATATCTGACCACCAACGCTACTTGATGG
AGGACATGCCAGGGCTCCCACATGTTTTATTCTTGTCCGTAAAAGTTGCCGCGAATGGACATTCCTTTGGAGCCAGCTTA
TTCCATGCTCTCAGGGTGTGTACTGGTGTAAGAAAGCTGACTCTTGCATTTGATGTCAGTTCCAGGCAACTCGAGGTAAA
GTTACATCCTTAATCTGTTTATCTAATA----------------------------------------------------
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----------------------------CTACTTGAGTTACCTGGAAAGTCACAATCTATTTGGTATGTACTTCCATTTT
TATGCACACTTTGGCTTGGGTTGCTAGTTACCTTAC-------------TTGCTCTTCAAACTTTTACAAAGTGGCATAC
TAATTGGGTTTGGTAGCTAGGTAATACTATGTTGCATTTTGTAAGATCCCTGTCTG-TTGAAAATCAGAGAAATTAGGGC
CCTTTACAGCAAAAAACAACAACTGAGCACTTCCTCTTCTCTGCTCTACTTTTTCAGAAAATTTAATATATTATTGAATG
TTATGTATCAGTGGAGGGTCTTTTATAATGGTTCTGTTGTTTGGCTCCCTCTTCCTGAAGAACAACCATATTTTCTGCAA
TA----GGTTGGCCCCAACTAATTTGTAGGTAGTGTGCTTTTGTTACTGTTGTTGGTGGCATATCTCAAAGTATTCAGGT
CATAGTTTGATATTTCCAGTTTCACCTCTCTCTTTTTACTACATCAAATCATACCAGTTATTCACTTATTCTTATTAAGC
CGGCATGTTGTTTCAGGCTCAAACTACATGCTCGCTGGGTTGCATATGCCATCAGCCACCAAACTGGAAAACTGACGAAC
TCCTGCTGAGTCACCTCATAATAATCGAAATCAGTGCCTGGAGAGGAACTGAAAATGAAGTTGCTTTTGTGGAACGGTTG
CTTAATTGGGCAACAGTGCTAAAAGAAATGACCATAACTTTCCATCAGTCAGTTACTGAAAGCAACGCCGAGGATCTCTG
CCAGACATTACTAAGCTTCTCTAGACTGGAAACATGCATGAAATTTTACGTGCATCGTGGCTTGTACGAGAAGGTCCCGT
ATTTTCCTGAAGGCTAAGGCACCTGCTTGTGTCTTGCACTAGTTGCTATTCT--TTTTGGTGTCAACAGCACTCTATGTA
AAGATCAAAATCTAGTAGAGTGGTCCAAGATGTTACGATATCATCAACCTATTTTGCAAGATGTTCGAACCTGCTTCATG
TTTTGTCTGTTGTACTGCTCACGAATGGAGTTCTCGG-------CGCTGTTTTCGCAAGCCTTTGATGTGTAAGATCCAA
ATG----------------------TTTGCATG--CAGAAGTGGTAGTGAACTCATCAAGTTATGTCATTTTCGTAATGA
TTGTGTTATCTGTGGCACTGACTGAATCCCAAGCATTTAAAAATCTGCAAGAAAGCTGTTCAGTGTGGTTTTGTCTGAAG
AAATCACCAGTTGCATGATGTATTTAGAAGCAAACTAGTTCACTTTCATGCTGTTTGGCAGAGCATATCTCATAAGGAAT
GACACAGCTATTTTCTCTGAGTACATGATCCTAGATTTGAAGGAAAACTAATTTGCAAACAGAGCTATTTTTCCCTTGTG
CTTGTGAAAAAAAGTA-TGTATTTCGGTGGATTTGTTTGTGAGCTTTATCTCTTTTTTTCTTTTATGATGGAAAGGGAAA
AGGAAAAATCAGAGATCTCTGGAAAGGAAAAGATAATGCAGCAAGTCGGTCTAGTCGAAGCTCCTGCCAGAGATTGCCAG
CCGTTTCTTCGATGATCACGTTCGACTTAGAAGTGCAAAATGAAAAGTCCACGCGGACTAAAAAGATCGCACAGGGCTCG
TTGTTTTTTCTCCCCTAAGGCGATAGACATAGGGTTTCGACATCTTCCGGGGGCGCTCGCCGGAATCTACCCATCGCCCG
TCGCCAAAACCCCCTCGACCCCTCGGGGCTAGTACTGCAGGGGGTCCGGACGATCTGCTCCAGCCTGGGTCCCTAGGGCG
CGTGGGAAGAGAAGGAAGGAGAGGAAGTTTTTCTTGTTCGAGATCCGATCAAGCAGCGATGGCTGAAGGAGCGGGATCGC
AGAGGCTGGGG
>chr4B_4
---CATGGACCTCGTTGACGATGCCGATGGTGGCAACCTGGTGCGAGCATTCGGTCGAACATGTGACGTGCACCAACTCC
ATGCAATCAGGGGACGCATCATGGACGATCTGGAGGACCTCCGGGGCCTTGAAGGTGGAGAAGGAGACGTCGGTGGAGAC
TGCAGTGACACTGGTGTCGATGGTGCGGTCGACTACAAGCTCGACCACTTGGTGGATGGGGCTGACCGTGGGATCGAGGT
GGACGGCGGTGGCGG---------------------------------------------------------CGTCATGG
ACCTCGTCAATGCTATCGACCGTGGGCTCGAGGTGGACGGCGGTGGCGGCACCATGGACCTCGTCGATGCTATCGATGGT
GTCGACCTGGGTCGAGCACTCCATCGAACAGGTGACGGGCACCATCGCGATGCACACCGGGGACGAATCATGGACGAGCT
CAAGGACCTCCGGGGCCTTGGCGGTGGAGAAGGAGACACTGCTGGGGTCG---ATGGTGAGGTCGGTGCTGGGCATGACC
AGGGCCGATGGTTTTTTAGACGAGGAAGCAGCCGAGTCGAGTTGTGCGTTAGCAGCAACGAGCTCAGCAGTCATGCCCTC
AATCCTGGAGATGAAGGATGCGAGATACCATATCGTCTGCTCCTTGGCCGACATGGCATCCCACTCCGGTGGTAAGTCAG
CGGGCATGGCGTCGTCGCCGGTAGAACAGAGAGGAATCAAGTGTGGAAGAAAAAATTGGGGAAA--ATTTGAGGGGTGGA
AGGGTGGTGGCCTGGCTCTGA-----------------------------------------------------------
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>chr4A_4
CAC---GGACCTCGTTGACGATGCCGATGGTGGCGACCTGGTGCGAGCATTCTGTTGAACACGTGACGTGCACCATCTCC
ATGCAATCAGGGGATGCATCATGGACGATCTGGAGGACCTCCGGGGCCTTGAAGGTGGAGAAGGAGACGTCGGTGGAGAC
TGCAGTGACAGTGGCGCCGATGGTGCGGTCGACTGCAAGCTCGACCACTTGGTGGATGGGGTCAACCGTGGGATCGAGGT
GGACGGCGGTGACGA---------------------------------------------------------CGTCATGG
ACCTCGTCGATGCTGTCGACCGTGGGCTCGAGATGGACGGCAGTGGCGGCGTCATGGACCTTGTCGATGATGTCGATGGT
GTGGACCTGGGTCGAGCACTCCATCGAACAGGTGACGGGCACCATCGCGATGCACACCGGAGACGAATCATGGACGAGCT
CAAGGACCTCCGGGGCCTTGGCGGTGGAGAAGGAGACACTGGTGGG---GTCGATGGTGAGGTCAGTGCTGGGCGCGACC
AGGGCCGATGGTTTTTTAGACGAGGAAGCAGCCGAGTCGAGTCGTGCGTTAGCAGCAACGAGCTCAGCAGTCATGCCTTC
AATCCTGGAGATGAAGGATGCGAGATACCATATCGTATGCTCCTTGGCAGACATGGCATCCCACTCCGGTGGTAAGTCGG
CGGGCATGGCGTCGTCGCCGGTGGAACG--GAGGAAACAAGTGGGGAAGAAAAAATTGGGGGAA--AATTGAGGGGTGGA
AGGGTGGTGGCCTGACTCTGA-----------------------------------------------------------
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>chr3A_13
------------CGTTGACGATGTCAATGGTGGCGACCTGGTGCGAGCATTCCGTCGAACATGTGATGTACACCATCTCC
ATGCAATCAGGGGACGCATCATGGACGATCTGGAGGACCTCCGGGGCCTTGAAGGTGGAGAAGGAGACATTAGAGGAGAC
TGCAGTGACCGTGGCGTCGATGGTGCGGTCGACTGCAAGCTCGACTGCTTGGTGGATGGGGTCGACCGTGGGATCGAGGT
GGATGGCGGTGGCGG---------------------------------------------------------CGTCATGG
ACCTTGTCGATGCTGTCGACCGTGGGCTCGAGGTGGACGGCGGTGGCGGCATCATCGACCTCATCGATGCCGTCGATGGT
GTCGACCTGGGTCGAGCACTCCGTCGAACAGGTGACGGGCACCATCGCGCTGCACACCGGGGACGAATCATGGACGAGCT
CGAGGACCTCCGGGGCCTTGGCGGTGGAGGAGGAGACACTGGTGGG---G---ATTGTGAGGTCGGTGCTGGGCACGACC
AGGGCCGATGGTTTTTTAGACGAGGAAGCAGCCGAGTCAAGTCGTGCGTTAGCAGCAACGAGCTCAGCAGTCATGCCCTC
AATCCTGGAGATGAAGGATGCGAGATACCATATCGTCTGCTCCTTGGCGGACATGGCATCCCACTCCGGTGGTAAGTCGG
CGGCCATGGCGTCGTCGCCGGTGGAAC--AGAGGAATCAAGTGTGGAAGAAAAAAAATTGAGAAACAATTGAGGGGTGGA
AGGGTGGTGGCCTAGCTCTGA-----------------------------------------------------------
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>chr3D_813
CATTTCACCCA---------------------------------------------------------------------
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------------------------------CAAGAGTCTCCATCTATCGACTATCGCTGGCCCATCTCCACCAAATCTGC
AAA-CCCCCAAACCCTGGCTCCCCCAAATCACCGTGC--------CGACCGCTTCTCCCGAGCTCCAATTCACCGCAATG
GCGCAGTGTGATCCGTGCGTGTGAGAGGCGCC-----AAATCCCTCCTCCAACCATGGAGCAGAGCGATGGGCCCAAGCG
ACCGAAGCTCGCCGACGCCGCCGACGGCGACGAGGACCGCCTCAGCGTGCTGCCCGACGACATTCTCATCCACATCCTCG
TCAAGCTCCGCGGCACCCCCATGGCCGCTCGGACCAGCGTCCTCTGCCGCCGCTGGCGTGACCTCTGGAAACTCCTCCCG
GAGCTCAACTTTCCCCTCGGCACCGAGCCGCACCG------------------CATACGCTCCGCCCTCACAGCCCACGA
AGCGCCGGTCATCCACTTCCTCGTCGTCGACCTCCAGGACGCCGCAGCGGAGTCGGTGGCGACGTGGGTCCCCATCATCG
CGCCCCGCCTCTTCGGCGAACTATTCATCTTCAATCTCAGGCGGGACTGGGATGGGGAAACAGGCACGGTTGAGCTGCCT
TGCTTCCAGGGTGCCGACTGGATCTCCCTCGACCTAGACAATCTTGGCCTCGCCTTGCCGCCCTCCGGCGTGTTTGCCTG
GCTCACCGATCTCTGTCTGGTAGCCGTTAGGATGCGTGGTTCCTGCAGACTCGGTGACATTGTCTCCTCGCCACGGTGCC
CATCGCTGCGGAAGCTCATCCTACGCGACGCCCAGGTCCGGGCTGACA---TTGTAATCCACTCAGAGTCTCTCTTAGAA
ATAGGGATGGATAATGTGTTACTAGACCATAACGCCTTGGGTCCGGGCATCCTCGCCATTTCCTCAGAGTCTGTCCTCCA
AATAGATCTGAAGAATTTAATTGGCGTGCGGCAGCTCCTTGTCATGGCGCCTGCACTCATTTCATTGAAAGAGAAAGACA
CCACCTACATTGCTGATCCTGTGGATCCGAGTCAACCAGTTGCCAACATCTCAGCCCCTCAGCTCACGTTGCTTGAGTGG
AATGCTCGTTATGATAGAAGATCCGTTCAGCTTGGCAAGATGGCACATCTCCAATGGCTGCACGCCGGTCAATTTCTTGT
ATATGGATCCGATGAGGATTTTGCACACAATCGCATCAGGCTTTTGCAGCGCTTCGAGTTCATCATCTGTCTTGACCTTG
CGCTTTACTACCGAAAGGTGGGTTCCATTCTTATGTGATATTC-CATCATCATAATATGCTACCAAGTCAATAATAACAA
GGC-AAATATGGGGTTATGCTATTTGGTATATTTGAGTAAGCATTACAAAATTCTCATTTGTTTGTCTTTGCTCATGTCT
GTGCAACATGGCTTAGTGCACTCAATCTTTATTCTTTCCCAATAC-TTATATAGTTATCCTCTTAGATGGTACTCCCTCC
GTAAAGAATATAAGAGCATTTAGATGACTACTTTAGTGATCTAAACGCTCTTATATTTATTTACAGAGGGAGTACTTGCT
TTGTACCACCTTTGAATAGTTAGCATTGAAGCTGCACGCTAGTATTACTACACTAGGATTTACTCCCTCCGTTTCAAAAT
AGATGACCCAACTTTGTACTAACTTTGTACTAAAGTTAGTACAAAGTTGGGTCATCTATTTTAGAACGGAGGGAGTAGTT
ATTACTGAACTAGGATTTAGTTATTGAATGGGACATGAGCTCTCAGGAGTGGAGAAACATGAACACCAGCAGTCCTTGTG
GCCGGATTGGATATCCTCCCACCAGCACACACAAAACCATTTGTAGTAAGAAAAATGAGTATGTCTGTGTCTTTC--TCC
AACCGCCATTATATATAATCCTCCTTTATGACTTTCTATCAACCCGTAGGACATGTCTGACCACCAACGCTACTTGATGG
AGGACATGCCAAGGCTGCCATATATTTTATTCTTGTCCATAAATGTGGCGGCGAATGAACATTCCTTTGGAGCCAGCTTA
TTCCATGTTCTCAGGCTGTGTACTGGTGTAAGAAAGCTGACTCTTGCATTTGATGTCAGTACCAGGCAACTAGAGGTAAA
ATTACATCCTTAATCTGTTTATCTAATA----------------------------------------------------
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----------------------------GTACTTGAGTTACCTGGAAAGTCACAATCTATTCAATATGTACTTCCATTTT
TATGCATACTTTGGCTTGGGTTGCCAGTTGCCTCACTCTAGGTGTTGGTTTGCTCTTCAAACTTTGACAAAGTGGCATAC
TAATTGGGTTTGCTAGCTAGGTAATA---TGTTGCATTTCGAAAGATCATCTGTCTATTGAAAATCAGAGAAACTAGGAA
CCTTTCCAGCAAAAAAAATTGACGCTTC-CTTCCTCTTGTCTGCTCTACTTTCTCAGAAAATTTAATATCTTATTGAATG
TTATTTACCGATGGAGGATCTTTTATAATGGTTCTGTCATTTGACTCCCTCTTCCTGAAGAACAACCATATTTTCTGCAA
TATATAGGTTGGCCCCAACTAATTTCTAGGTAGTATACTTTTGTTAATGTTGTT-GTGTCATACCCCAAAGTATTCAGGT
CATAGTTTCATATTTCCAGTTTCACCTCTCTCATTTTACAACATCAAATCATACCAGTTATTCACTTATTCTTATTAAGC
CGATATGTTGTTTCAGGCTCAAACTACATGCTCACTGGGTTGCATATGCCATCAGCCACCAAACTGGAAAACTGACGAAC
TCCTGCTGAGTCACCTCGTAATAATCGAAATCAGTGCCTGGAGAGGAACTGAAAATGAAGTTGCTTTTGTTGAACGGTTG
CTTAATTGGGCAACAGTGCTAAAAGAAATGATGATAACTTTCCATCAGTCAGTTACTGAAAGCAACGCCGAGGATCTCTG
CCAGACATTACTAAGCTTCTCTAGGCCAGAAACTTGCATGAAATTTTACGTGTACCGTGGCTTGTACGCGAAGGTCCCAT
ATGTTCCTGAAGGCTAAGGCACCTGCTTGTGTCTTGCACTAGTTGCTAATACTCTTTCGGTGTCAACAGCACTCTATGTA
AAGATCAAAATCTAGTAGAGCGGTCCAAGATGTTACAATGTCATCAACCTATTTTGCAAGATGTTAGAACTTGCTTCATG
TTTCATCTGTTGTACTGCTCACGAATGGAGTTCTCAG-------AGCTGCTTTCACAAGCCTTTGGTGTGTACAATTCGA
ATC----------------------TTGGCATGCTCAAAAGTTGTAGTGAATTCATCAAGTTATGTCATTTTGGTTATGA
TTGTGTTATCTGTGGCACTGACTGAATCCCGAGCATTTAAAAATTTGCAAGAAA-CTGTTCAGTGTGGTTTTGTCTGAAG
AAATGACCAGTTGCATGATGTATTTACAAGCAAACTAGTTCGCTTTCATGCTGTTTGGCAGAGCATATCTCATAAGGAAT
GACGAAGATACTTTCT-TGAGTACATGAGCCTTGATTTGAAGGAAAACTAATTTGGAAACAGAGCTA-TTTTCCCTTGTG
CTTGTGAAAAAAAGTAATGTATTTCGGTAGATTTGTTTCTGAGCTTTATCTCTTTTT--CTTTTATGATGGATAGGGAAA
AGAAAAAAGCAGATATCTCTGAAAAGGAAAAGATAATGCAGCAAGTTGGTCTAGTCGAAGCACCTGCCAGAGATTGCCAG
CCGTTTCTTCGACGATCACGTTCGACTCAGAAGTGCAAAATGAAAAG---------------------------------
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>chr3A_813
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---------------------CATTTTACCCAAGAGTCTCTATCTATCGACTATCGTTGGCCGGTCTCCCCCAAATCTGC
GAA-CCCCCAAACCCTAGCTCCCCCAAATCACCGAGC--------CAACCCCTTCTCCCGAGCTCCACC-CACCGCATTG
GCGCGGTGTGATCTGTGAGTGTGTGAGGCGCCAAATAAAATCCCTCATCCAACCATGGAGCAGAGCGATGGGCCGAAGCG
GCCGAAGCTCGTTGATGCTGCCGACGGCGACGAGGACCGCCTCAGCGTGCTGCCCGACGACATTCTCATTGACATCCTCG
CCAAGCTCCACCGCACCACCATGGACGCTCGGACCAGCGTCCTCTCCCGCCGCTGGCGGGGCCTCTGGAAGCTCCTCCCG
GTGCTCAACTTCCCACTCGGCACCGAGCCGCCCCTCGGCATAGAACCGAAGCACATAGTCTCCGCCCTCACATCCCACGA
AGCGCCGGTCATCCGCCACCTCATCGTTAGCCTCCGGGAGGCCGCTGCGGAGTCGGTGGCGATGTGGCTCCCCATCATCG
CGCCCCGCCTCTTCGGCGAACTATCCATCTTCAATCTCAGGTGGGACCGGGACAGGGAAATAGGCACCGTTGAGCTGCCT
TGCTTCCAGAGTGCCGACCGGATCTGCCTCAACCTAGACGATCATGGCCTCGCCCTGCCGCCCTCCGGCGTGTTTGCCCG
GCTCACCTATCTCCGTATGATATCCATTAGGATGCGTGGTCCCTGCAGACTCGGTGACATTGTCTCCTCGCCACGGTGCC
CATTGCTGCAAAAGCTCTTCCTACGTGACTCCTATGTCCAGGATGACGTTGTTGTAATCCACTCAGAGTCTCTCTTAGAA
ATAGGGATAGATAATGTGTTACTACACCACGACGCCTTGGGTCTGCGCATCCTCGCCATTTGCTCAGAGTCTGTCCTCCA
AATAGATCTGAAGAATTTAGCCT---TGCGGCAGCTCCTTGTCGTGGCGCCCGCACTCATTTCGTTGAAAGAGAAAGGCA
CCCACTACATTGCTGATGCTGTGGATCTGAGTCAACCAGTTGTCAACATCTCAGCCCCTCAGCTCATGTTGCTTGAATGG
AATGCTAGTTATGATCGAAGTTCCGTTCAGTTTGGCAAGATGGCACATCTCCAATGGCTGCACGCTGGTCAATTTCTTGT
ATATGGATCAGATGAGGATTTTGCACACAATCATATCAGGCTTTTGTAGTGCTTTGAGTTCATCGCCTGTCTTAACCTTG
CGCTTTACTATTGGAAGGTGAGTTCCATTCTTTCGTGATATTC-CATCATCATAATATGCTACCAAGTCAATAATAACAA
GGC-AAATATGGGGTTATGATATTTGGTATATTTGAGTAAGCATTACATAATTCTCACTTGTTTGTCTTTCCTCATGTCT
GTGCAACATGGCTTAGTGCACTCAATATTTATTCTTTCCCAATAC-TTGTATAGTTATCCTCTTAGATG-----------
-----------------------------------------------------------------------GTACTTGCT
TTGTACCACCTTTGAGTAGTTAGCATTGAAGCTGCACGCTAGTATTACTGCACTAGGATT--------------------
---------------------------------------------------------------------------TAGTT
ATTACTGAACTAGAATTTAGTTATTGAATGGGACATCAGCTCTCAGGAGTGGAAAAACGTGAACACCAGCAGTCCTTGTG
GCCGGATTGGATATCCTCCCACCAACACACACAAAACCACTTGTAGTTAGAAATATGAGTATGTCTCTGTCTTTC--TCC
AA---CCGTTATATATAATCCTCCTTTGTGACTTTCTATCAACCTGTAGGACATGTCTGAGCACCAATGCTACTTGATGG
AGGACATGCCAAGGCTTCCATATATTTTATTCTTGTCCGTAAATGTGGCGGCGAATGAACATTCCTTTGGAGCCAGCTTA
TTCCATGTTCTCAGGCTGTGTTCTAGTGTAAGAAAGCTGACTATTGCATTTGATGTCAGTACCAGGCAACTAGAGGTAAA
GTTACATCCTTAATCTGTTTATCTAATATTCCCTCCGTTCCTAAATATTTGTCTTTTTAGAGATTTCAAATAGACTACCA
CATACGGATGTATATAGACATACTTTAGAGTGTAGATTCACTCATTTTGTTCCGTATGTAGTCACTTGTTGAAATCTCTA
GAAAGACAAATATTTAGAAACGGAGGGGGTATTTGAGTTACCTGGAAAGTCACTATCTATTCAATATGTACTTCCATTTT
TATGCATACTTTGGCTTGGGTTGCCAGTTGGCTCATTCTAGGTGTTGGTTTGCTCTTCAAACTTTGACAAAGTGGCATAC
TAATTGTGTTTGGTAGCTAGGTAATA---TGTTGCATTTCAAAAGATCACCTGTCTATTGAAAATCAGAGAAACTAGGAA
CCTTTCCAGCAAAAAAATTGAGCACTTC-CTTCCTCTTCTCTGCTCTACTTTCTCAGAAAAATTAATATATCATTGAATG
TTATTTACCGATGGAAGATCTTTTATAATGGTTCTGTTATTTGA----CTCTTCCTGAAGAACAACCATATTTTCTGCCA
TATATAGGTTGGCCCCAACTAATTTCTAGGTAGTATGCTTTTGTTAATGTAGTTGATGTCATATCCCAAAGTATTCAGGT
CATAGTTTCATATTTCCAGTTTCACCTCTCTCATTTTACAACATCAAATCATCCCAGTTATTCACTTGTTCTTATTAAGC
TGATATGATGTTTCAGGCTCAAACTACATGCTCACTGGGTTGCATATGCCATCAGCCACCAAACTGGAAAACTGACGAAC
TCCTGCTGGGTCACCTTGTAATAATGAAAATCGATGCCTAGAGAGGAACTGAAAATGAAGTTGCTTTTGTTGAGCGGTTT
CTTAATTGGGCAACAGTGCTAAAAGAAATGACGATAACTTTCCATCAGTCAGTTACTGAAAGCAACGCCGAGGATCTCTG
CCAGACATTACTAAGCTTCTCAAGGCCGGAAACTTGCATGAAATTTTACATGTACCGTGGCTTGTACGCGAAGGTCCCGT
ATGTTCCTGAAGGCTAAGGCACCTGCTTGTGTCTT---------------------TTGGTGTCAACAACACTCTATGTA
AAGATCAAAATCTAGTAGAGCGGTCCAAGATGTTACAATGTCATCAACCTATTTTG-----------AACTTGCTTCATG
TTTCATCAGTTGTACTGCTCGTGAATGGAGTTCTCAAGTGTCAACGTTGTTTTCACAAGCCTTTGGTGTGTAAGTTCTGT
GCCTTTGGTGTGTAAGTTCTGATTGTTGGCATGCTCAAAAGTGGTAGTGAACTCATCAAGTTATGTCATCTTGGTTATGA
TTGTGTTATCTGCGGTGCCGACTGAATCC------------------------------------TGGTTTTGTCTGAAG
AAAACATCAGTTGCATGATGTATTTACAAGTGAACTAGTTCAATTTCATGCTGTTTGGCAGAGCATATCTCATAAGGAAT
GACGCAGACATTTGCT-TGAGTACGTGA----------------------------------------------------
--------------------------------------------------------------------------------
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-----------
>chr3A_845
--------------------------------------------------------------------------------
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-----------------------------------------------------TCGCTGGCCGATCTCCGCCAAATCTGC
AAA-CCCCCAAACCCTAGCTCCCCCAAATCACCGTGC--------CAACC-CTTCTCTAGAGCTCCAATTCACCGCAATG
GCGCAATGTGA------AGTGTGAGAGGCGCC-----AAATCCCTCCTCCAACCATGGAGCAGAGCGATGGGCCCAAGCG
ACCGAAGCTCGCCGACGCCGCCGACGGCGACGAGGACCGCCTCAGCTGGCTGCCCGACGACATTCTTATCCACATTCCCG
TCAAGCTCCGCTGCACCCCCATGGCCGCTCGGACCAGCATCCTCTGCCGCCGCTGGCGGGGCCTCTGGAAGCTCCTCCCA
GAGCTCAACTTTCCCCTCGGCACCGAGCCGCACTG------------------CATATGCTCTTCCCTCACAGCCCACGA
AGCGTCGATCATCTGCTTCCTCGTCGTCGACCTCCAGGACGCCGCAGAGGAGTCGGTGGTGACGTGGCTCCCCATCATCG
CGCCCCTCCTCTTCGGCGAACTATTCATCTTCAATCTCAGGTGGGACTGGGATGGGGAAACTGGCACAGTTGAGCTGCCT
TGCTTCCAGGGTGCCGACTGGATGTCCCTCGACCTAGACAATCTTGGCCTCGCCTTGCCGCCCTCTGGCGTGTTTGCCCG
GCTCACCGATCTCTGTCTGGTAGCCGTTAGGATGCGTGGTCCCTGCAGACTCGGTGGCATTGTCTCCTCGCCACGATGCC
CATCGCTGCGGAAGCTCATCCTACGCGACGCCCAGGTTCGGGATGACATTG---TAATCCACTCAGAGTCTCTCTTAGAA
ATAGGGATGGATAATGTGTTACTAGACCACAACGTCTTGGGTCCGGGCATCCTCGACATTTCCTCAGAGTCTGTCCTCCA
AATAGATCTGAAGAATCTAATTGGCGTGTGGCAGCTCCTTGTCGTGGCGCCTGCACTCATTTCATTGAAAGAGAAAGACA
CCACCTACATTGCTGATCCTGTGGATCCGAGTCAACCAGTCGCCAACATCTCAGCCCCTCAGCTCATGTTTCTTGAGTGG
AATGCTCATTATGATTGAAGATCCGTTCAGCTTGGCAAGATGGCACATCTCCAATGGCTGCACGCTAGTCAATTTCTTGT
ATATGGATCCGATGAGGATTTTGCACACAATCACATCAGGCTTTTGCAGCGCTTTGAGTTCATCGTCTGTCTTGACCTTG
CGCTTTACTATTGGAAGGTGAGTTCCATTCTTACGGGATTATTTCATCATCATAATATGCTACCAAGTCAATAATAACAA
GGTAAAACATGGGGTTATGATATTTGGTATATTTGAGAAAGCATTACAGAATTCTCACTTGTTTTTCTTTGCTCAT----
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-----------
>SNPs
---------S-S--------------SS-----------S----------------------------S-----------
--------------------------------S-----------S---------S-------------------------
--------S------S----------------------------------------------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-------S----------------------------------S-------------------------------------
------------------------------------------------S-------------------------------
--------S-------------S------------------SS-----------------S------S-----S------
-------S-------------------S---S---------------S--------------------------------
S-----------------------S-------------------------------------------------------
--------S----------S------SSS-----------------------------------S-------------S-
--------------------------S--------S-S--------S---------------------------------
---S---------------------------------SSSSSSSS-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
S----------S-----------S--------------------------------------------------------
-----------------S--------------------------------------------------------------
---------------------------------------------------S-----SS---------------------
-------------S---------------------------------------------------------------S--
---------------------------S----------------------------------------------------
-------------------------------S----------------S-------------------------------
--------------------------------------S---------------------S-------------------
------------------------S-------------------------------------------------------
----------S---------------------------------------------------------------------
-----S--------------------------------------------------------------------------
----------S---------------S-----------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-----------------S---------S------S--S----S-------------------------------------
--------------------------------------------------------------------------------
S-------------------------S-----------S-----------S------S----------------------
----------------S----------------S--------------------------S-SSSSSSSS-S--SSS---
------------------------------------------------------S-------------------------
-----------S----S---S--S-------------------S--S--S-------S----------------------
-------S-------S--------------------------------------------S----------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S--------------------------------SSS----------------
------S-----------------S----S---S-------------------------------S--------------
--------------------------SSS----------S-S------S-SSSSSS-----------------S----SS
-----S----------S-SS---SSSS-S-----------------------S---------------------------
----S--S-SS------S--------------------S----S------------------------------------
-------------------------S--------S-----------S-----------S------S--------------
--------S-----------------------S------S----------------------------------------
--SS-----------------------------S----------------------------------------------
-----------------S----------------------------------------------------S---------
--------------------------------S-----------------------------------------------
------------------------S-S------S------------------S-S-------------S-----------
--S---------------------------------------------S-SS----------------------------
--------------------S---------------S--S-------------------------S----S---------
---SS------------------------------S------------------S----------S------------S-
--S------------------------S---------S----------------------------------S--S----
------------------------------S-------------S---------S-------------------------
--------------------------S-----------------------------------------------------
---S---S--------S-----------S---S----------------------S-----------S------------
----------------------------S---------S------------------SS-------------S-------
--S-----S----S-------S------------------------S--------------S------------------
------------S--------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_924
--------------------------------------------------------------------------------
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------------------------CAAATCACCGTGCGTCCATG------------------------------------
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>reverse_1792
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------AAGCTCCTTGTCATGGCTCC-----------------------------
--------------------------------------------------------------------------------
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>forward_1579
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---------------------------------------TCCCTGCAGACTTGGTGATG---------------------
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>reverse_3714
--------------------------------------------------------------------------------
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---------------------------------GCTGGGTTGCATATGCCATC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_1809
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------GGAAGCTCCTTGTCATGGCT-------------------------------
--------------------------------------------------------------------------------
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>reverse_3975
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------------------------------------------------------TCGTGGCTTGTACGAGAAGG------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------
>forward_2657
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------GTG
GCCGGATTGGATATCCC---------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4856
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-------------------------------------------------------CTCGCCGGAATCTACCCATC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
